<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-20 08:36:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599425" ref_strand="-" ref_description="SGN-E599425 [52413]">
      <seq>tccgttgccgaaaaccgattgattgctcgagggacctgcttggtgatgactattacatgtgcagatttcagaaacctggggaagtggaagaggagtttgcttcaattgatactgcaaaactgatgataggatttcttacttcacgtgatacacgtccaccttgcattcccaaagagattggctttcatcaggcctttgctcagttaccagcaacattaccttcttggctaacacaagaagatgtcaattattatgttgagaaattaaacaaaacaggctttactggaggattgaactactatagaaatatggacaaaaactgggagctcacagccccatttagtggatgcaaaattcaagtcccgactaagtttgtggtaggtgagttggacctgacatatcatattcctggaatcaaggagtatatacacaatggtggattcaagaaagaagttccaagtttggaggaagttgttgtaatggagggagcagctcacttcatcaaccaagaaaagcctgatgaaataaatgcccacatttatgattttattcagaagttttaaccaaccaattggtagtatctattattaattattggagtttttggcataatttgagatgtacttgttgaagtttgtgacaaaataagatgcctaaacagatttatgttcctgaattttgaaatttgattgatgaaggaatatgtatttgccattctgtttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="10892" stop="6915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10592" g_stop="10523" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10522" i_stop="8429" i_length="2094">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8428" g_stop="8184" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="316" r_length="245" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8183" i_stop="7564" i_length="620">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7563" g_stop="7157" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="726" r_length="410" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E599425" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599425" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10592" e_stop="10523"/>
          <exon e_start="8428" e_stop="8184"/>
          <exon e_start="7563" e_stop="7157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTG-CGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAGGTATTTTTTTCTCTACTGTTCAAGTATATTTACCAGATATTTTTCGAAATTGAATTAGATCTAATATTCATTTGTTTCGCTTTTTTTTCTTAAAAAACTCCGAGATAGTTCTCTTTCCATTCATTTTTTTTTTTGGGTATATGAATGAAAATAAGGATGAAATTTTGATAGCTGGTATTCTTTGAGCCGATCAAAAATTGTTTCGGATTGAGCTATAAGGATGTGGATGGTAGGGAGGAAGGTGTTTTTTTTTTTTTTTTAATTTGGTTTATGGAAACGTAAGACATCCTAAACTAGTATAATCGTAACTATTGTTAAACGAATTGGTAAATTTTTAAAAATAAATATACAAAATACATGATTTTAAAACTCGTCAACAAAGTATATTTAGTCCAATAGCAATTATGAGCCTTTTAACATTATTGCCTCTTGGGCGATTTTACTCTTTATCTTTTAGAGAGTAAGATAGAGATTGTCTTTTTCAAATATTTTCTATTCTATTATTCTTTGCTTTCCAAATACTCTAAATATTATATTATTATTTTGTAATTCACATATTAATTTTCATATAAGGATATTAATAAAATTTCTAATATTCATAATTTTTAAAAAATATAATATAATATCCTTAAGAATATATTATTTAATATATAATACATCCTAAATTAATAATATTTAAGATATTTTTTTTCAATTTTCGTCACTTCAAGTGAATATGATTTGATGAATTTTCGTTATGAAAGATCCACAAAATTCAAATTTAAAAATATAACACATAACTTAATAATTTAAATTCAATATAACAATACATTACATAACACCATAATTTTAAAATTACAACAACAACAATAATAATAATAATTTAATAATCAGGTAGGTCCTTTACAAATTTAACAATATTCGGAAAAGATTAATGTATGATCTAAAGAAGTGGTGATTGTAATTGCAGTTTATCTTATTGGTTGTTTTTTACAATTATTTGAAATTGTTCTTTAAAAATTCAGAATAAAATGTAAATCTATATTAGATAAAGAATTTGAAAAGAATAAACTCTATATTACATGAAAATTATATAGGGTGATTAATTGGAAAAAAAATAAAGAATAGATTTAAGTAACGATATAATATTGAGGTGAGATAATAAGATTCTTTTTTAGAAAAGTAAAATAGAGATTTGAATTGGAGTTGATTGTTTGGAGAATTAGTGAAGTCTATATTTGAAAGTAAAATAGAGGATAAGGATGAATATGTCTATGAATAAAAATCTACAAACTTCAAATTTTGAATATTCATTTGACTTTTCTTATAAAAGTAGAGAAAACCTCCGATTTTCTCCATAAAATAGAGAAAATAAGTTTTACGAGCAACATTTCACATGATAACGTTTTTTTCCATGCTCCCACACACCTCATCTTTACCTCACACCCTCATAGCCCTCATCCCACTCTTACTCCCATAAGTATTTATCAAAATTAGCTATGCTAATATTTTTTACTTACGTATCAAACATAAAAAAATAAATAACAAACTCACTAATTTTTTTAAAAAAAACATTTTTTAAGAAAATATCTTCATTCAAACAAAACACCCCAAAGAAATATCTTATATTAAGTAAATTTCTTAAATTCTTGTTTGTTCGTTTTTATGAGCTCTCACTTTCAAGTTTGTGCTCACTTAGTTTCCTCCAATGAAGAGAGCAAACGGTTTAATGACATGTCGTTCATTTCTACTTATTAAACATTAATTAAATTTCTGTTTTTACTTATTATTTTTATAAATTAATATTAAATTAATTTATTTATGTTAAATTAATGTCTTTTTAAACAAATAGCGAGTAAATACAGAAGCATATTCTTGAAATAAAAGCACTGAAATAAACACTCTAGCTGGATTCAGACTCAGATTTCACAATTCTCCACCTTGTATCGGCATCACAATAACACTCTTATACTTCTCATGGGGCACTATTAATTACATCCTTATTTCTGTCAGTTTCTCCAAATAAATATATGTATATATTAGACATAATTTTTTTTTCGAAATTAACAGATACTACATATTTTTGTGATTTTCTAATAGTATGCTATTATTTAGAAACCTGGGGAAGTGGAAGAGGAATTTGCTTCAATTGATACTGCAAAACTCATCATAGGATTTCTTTCTTCACGTGATACACGTCCACCTTGCATTCCCAAAGAGATTGGCTTTCATCAGGCCTTTGCTCAGTTACCAGCAGCATTACCTTCATGGCTAACACAAGAAGATGTCAATTATTATGCTGAAAAATTAAACAAAACTGGCTTTACTGGAGGATTGAACTACTATAGAAACATGGACAAGTATGTATACCCCCAATATACTTTATACGTTTTAATTTGTCTGTCTAATTCTTGATTTGATACAGTTTTAGAAAAAAGTAGAGAAAGCTTTTGAATGTTATATAATTTTAAACGAAAAAATCTATGAAATATATCACTTTTCAATTTTCCTAAAATTAACGTTTAATTTGTTTATGAAATTATGAATAGAATTTAAACTTTAATTTCAAATCATGATTTAAAGTTTCATATTTTCTTTGAAGAATAATAGGATTTAAAATTTCTAAGTTGTGATTTCAATATATATATTTTAAAAATATAATAAGTTTCTATTTTGTGAAAAAAGATCTATTGTTTTAAATTCTACAATAAAAACTCATGCTTAATGTAAATAGATTATTTTTACCATGTGGAATAATCTTACTAGAGAATATTAGTTATTACTACTATGGTTGATATTTTGAACGTTTATAATAACATATGATCATAAATATTATCTTATTAAAGATTGTATAAGAGTGAATTCGATAGTTTTCACATATTGTTGAATTTTCATGTTTACGAGAATAAAATATAATAAAAAATTTAATTACATATTCAAATAAAAATTTCAACTTCAAATTAATCTGATTTCGATGCAGAAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAAGGAGTATATACACAATGGTGGATTCAAGAAAGAAGTTCCAAGTTTAGAGGAAGTTGTTGTAATGGAGGGAGCAGCTCACTTCATCAACCAAGAAAAGCCAGATGAAATAAATGCCCACATTTATGATTTTATTCAAAAGTTTTAATCAACCAATTGGTAGTATCTTTAATTAA-T-TTGGGGTTTTTGGCATAATTTGAAATGTACTTTGTTGAAGTTTGTGAC-AAATAAGATGCCTAAACAGATTTAT-CAGCTGAAATTTGAAATTTGATTAATGGATGAATAAGTATTTGCCACTTAGTTAATAA</genome_strand>
        <mrna_strand>TCCGTTGCCGAAAACCGATTGATTGCTCGAGGGACCTGCTTGGTGATGACTATTACATGTGCAGATTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTGGGGAAGTGGAAGAGGAGTTTGCTTCAATTGATACTGCAAAACTGATGATAGGATTTCTTACTTCACGTGATACACGTCCACCTTGCATTCCCAAAGAGATTGGCTTTCATCAGGCCTTTGCTCAGTTACCAGCAACATTACCTTCTTGGCTAACACAAGAAGATGTCAATTATTATGTTGAGAAATTAAACAAAACAGGCTTTACTGGAGGATTGAACTACTATAGAAATATGGACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTCACAGCCCCATTTAGTGGATGCAAAATTCAAGTCCCGACTAAGTTTGTGGTAGGTGAGTTGGACCTGACATATCATATTCCTGGAATCAAGGAGTATATACACAATGGTGGATTCAAGAAAGAAGTTCCAAGTTTGGAGGAAGTTGTTGTAATGGAGGGAGCAGCTCACTTCATCAACCAAGAAAAGCCTGATGAAATAAATGCCCACATTTATGATTTTATTCAGAAGTTTTAACCAACCAATTGGTAGTATCTATTATTAATTATTGGAGTTTTTGGCATAATTTGAGATGTAC-TTGTTGAAGTTTGTGACAAAATAAGATGCCTAAACAGATTTATGTTCCTGAATTTTGAAATTTGATTGATGAAGGAATATGTATTTGCCATTCTGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292436" ref_strand="+" ref_description="SGN-E292436 [cLET-1-H10]">
      <seq>taaaaaaaaaaaacagaggaaaatggagaaaatacagcacaaaactgtctccgctaatggaatcaaaatgcacgtagctgaaatcggtgaaggtccagcagttctatttctacatggcttccctgagttatggtattcatggcgccaccaattgctttacttttcaaacaaaggttacagagctattgcgcctgatcttcgtggttacggagacactgaaattccatcggaaatcagtagttatactgcttttcacattgttggtgatttgatttctctgttagatattctggatctagaaaaagtgttcttaattgggcatgattggggtgctctaattgcttggtttttctgtttgtttcgtcctgatcggattaaagctttggtgaatctgagttgtgagttacggcccagaaatccgttgcgaaaaccgattgattgcttgagggaattgcttggtgatgactattacatgtgcagatttcagaaactgggagctcacagccctatttagtggatgcaaaattcaagtcccaactaantttgtggtgggtgagttggacttgacatataatattcctggaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="11307" stop="7162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11009" g_stop="10523" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10522" i_stop="7564" i_length="2959">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7563" g_stop="7462" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="589" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E292436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11009" e_stop="10523"/>
          <exon e_start="7563" e_stop="7462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAGGTATTTTTTTCTCTACTGTTCAAGTATATTTACCAGATATTTTTCGAAATTGAATTAGATCTAATATTCATTTGTTTCGCTTTTTTTTCTTAAAAAACTCCGAGATAGTTCTCTTTCCATTCATTTTTTTTTTTGGGTATATGAATGAAAATAAGGATGAAATTTTGATAGCTGGTATTCTTTGAGCCGATCAAAAATTGTTTCGGATTGAGCTATAAGGATGTGGATGGTAGGGAGGAAGGTGTTTTTTTTTTTTTTTTAATTTGGTTTATGGAAACGTAAGACATCCTAAACTAGTATAATCGTAACTATTGTTAAACGAATTGGTAAATTTTTAAAAATAAATATACAAAATACATGATTTTAAAACTCGTCAACAAAGTATATTTAGTCCAATAGCAATTATGAGCCTTTTAACATTATTGCCTCTTGGGCGATTTTACTCTTTATCTTTTAGAGAGTAAGATAGAGATTGTCTTTTTCAAATATTTTCTATTCTATTATTCTTTGCTTTCCAAATACTCTAAATATTATATTATTATTTTGTAATTCACATATTAATTTTCATATAAGGATATTAATAAAATTTCTAATATTCATAATTTTTAAAAAATATAATATAATATCCTTAAGAATATATTATTTAATATATAATACATCCTAAATTAATAATATTTAAGATATTTTTTTTCAATTTTCGTCACTTCAAGTGAATATGATTTGATGAATTTTCGTTATGAAAGATCCACAAAATTCAAATTTAAAAATATAACACATAACTTAATAATTTAAATTCAATATAACAATACATTACATAACACCATAATTTTAAAATTACAACAACAACAATAATAATAATAATTTAATAATCAGGTAGGTCCTTTACAAATTTAACAATATTCGGAAAAGATTAATGTATGATCTAAAGAAGTGGTGATTGTAATTGCAGTTTATCTTATTGGTTGTTTTTTACAATTATTTGAAATTGTTCTTTAAAAATTCAGAATAAAATGTAAATCTATATTAGATAAAGAATTTGAAAAGAATAAACTCTATATTACATGAAAATTATATAGGGTGATTAATTGGAAAAAAAATAAAGAATAGATTTAAGTAACGATATAATATTGAGGTGAGATAATAAGATTCTTTTTTAGAAAAGTAAAATAGAGATTTGAATTGGAGTTGATTGTTTGGAGAATTAGTGAAGTCTATATTTGAAAGTAAAATAGAGGATAAGGATGAATATGTCTATGAATAAAAATCTACAAACTTCAAATTTTGAATATTCATTTGACTTTTCTTATAAAAGTAGAGAAAACCTCCGATTTTCTCCATAAAATAGAGAAAATAAGTTTTACGAGCAACATTTCACATGATAACGTTTTTTTCCATGCTCCCACACACCTCATCTTTACCTCACACCCTCATAGCCCTCATCCCACTCTTACTCCCATAAGTATTTATCAAAATTAGCTATGCTAATATTTTTTACTTACGTATCAAACATAAAAAAATAAATAACAAACTCACTAATTTTTTTAAAAAAAACATTTTTTAAGAAAATATCTTCATTCAAACAAAACACCCCAAAGAAATATCTTATATTAAGTAAATTTCTTAAATTCTTGTTTGTTCGTTTTTATGAGCTCTCACTTTCAAGTTTGTGCTCACTTAGTTTCCTCCAATGAAGAGAGCAAACGGTTTAATGACATGTCGTTCATTTCTACTTATTAAACATTAATTAAATTTCTGTTTTTACTTATTATTTTTATAAATTAATATTAAATTAATTTATTTATGTTAAATTAATGTCTTTTTAAACAAATAGCGAGTAAATACAGAAGCATATTCTTGAAATAAAAGCACTGAAATAAACACTCTAGCTGGATTCAGACTCAGATTTCACAATTCTCCACCTTGTATCGGCATCACAATAACACTCTTATACTTCTCATGGGGCACTATTAATTACATCCTTATTTCTGTCAGTTTCTCCAAATAAATATATGTATATATTAGACATAATTTTTTTTTCGAAATTAACAGATACTACATATTTTTGTGATTTTCTAATAGTATGCTATTATTTAGAAACCTGGGGAAGTGGAAGAGGAATTTGCTTCAATTGATACTGCAAAACTCATCATAGGATTTCTTTCTTCACGTGATACACGTCCACCTTGCATTCCCAAAGAGATTGGCTTTCATCAGGCCTTTGCTCAGTTACCAGCAGCATTACCTTCATGGCTAACACAAGAAGATGTCAATTATTATGCTGAAAAATTAAACAAAACTGGCTTTACTGGAGGATTGAACTACTATAGAAACATGGACAAGTATGTATACCCCCAATATACTTTATACGTTTTAATTTGTCTGTCTAATTCTTGATTTGATACAGTTTTAGAAAAAAGTAGAGAAAGCTTTTGAATGTTATATAATTTTAAACGAAAAAATCTATGAAATATATCACTTTTCAATTTTCCTAAAATTAACGTTTAATTTGTTTATGAAATTATGAATAGAATTTAAACTTTAATTTCAAATCATGATTTAAAGTTTCATATTTTCTTTGAAGAATAATAGGATTTAAAATTTCTAAGTTGTGATTTCAATATATATATTTTAAAAATATAATAAGTTTCTATTTTGTGAAAAAAGATCTATTGTTTTAAATTCTACAATAAAAACTCATGCTTAATGTAAATAGATTATTTTTACCATGTGGAATAATCTTACTAGAGAATATTAGTTATTACTACTATGGTTGATATTTTGAACGTTTATAATAACATATGATCATAAATATTATCTTATTAAAGATTGTATAAGAGTGAATTCGATAGTTTTCACATATTGTTGAATTTTCATGTTTACGAGAATAAAATATAATAAAAAATTTAATTACATATTCAAATAAAAATTTCAACTTCAAATTAATCTGATTTCGATGCAGAAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAA</genome_strand>
        <mrna_strand>TAAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAANTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445774" ref_strand="+" ref_description="SGN-E445774 [cSTA-18-F3]">
      <seq>gaaaatacagcacaaaaatgtcaccgttaatggaatcaaaatgcacgtagcagaaattggcgaaggtccagcagttctatttctacatggcttccctgagttatggtactcatggcgccatcaattgttgtacttttctaacaaaggttacagagctattgcacctgatcttcgtggttacggagacactgaaattccatcggaaatcagtagctatactgcattccatattgttggtgacttgattgctctgttagatattctagatctagaaaaagtgttcttagttggacatgattggggtgctctaattgcttggtttttctgtttgtttcgtcctgatcgaattaaagctttggtgaatctgagttgtgagttacggcccagaaatccgttgcgaaaaccgattgattgcttgagggaattgcttggtgatgactattacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="11282" stop="10236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10982" g_stop="10536" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E445774" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10982" e_stop="10536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACAT</genome_strand>
        <mrna_strand>GAAAATACAGCACAAAAATGTCACCGTTAATGGAATCAAAATGCACGTAGCAGAAATTGGCGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTACTCATGGCGCCATCAATTGTTGTACTTTTCTAACAAAGGTTACAGAGCTATTGCACCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGCTATACTGCATTCCATATTGTTGGTGACTTGATTGCTCTGTTAGATATTCTAGATCTAGAAAAAGTGTTCTTAGTTGGACATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGAATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445780" ref_strand="+" ref_description="SGN-E445780 [cSTA-18-F15]">
      <seq>ggatcccccgggctgcaggagaaaatacagcacaataatgtcaccgttaatggaatcaaaatgcacgtagcagaaatgggcgaaggtccagcagttctatttctacatggcttccctgagttatggtactcatggcgccatcaattgttgtacttttctaacaaaggttacagagctattgcacctgatcttcgtggttacggagacactgaaattccatcggaaatcagtagctatactgcattccatattgttggtgacttgattgctctgttagatattctagatctagaaaaagtgttcttagttggacatgattggggtgctctaattgcttggtttttctgtttgtttcgtcctgatcgaattaaagctttggtgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="11285" stop="10316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10981" g_stop="10616" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="387" r_length="366" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E445780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10981" e_stop="10616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTG</genome_strand>
        <mrna_strand>AAAATACAGCACAATAATGTCACCGTTAATGGAATCAAAATGCACGTAGCAGAAATGGGCGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTACTCATGGCGCCATCAATTGTTGTACTTTTCTAACAAAGGTTACAGAGCTATTGCACCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGCTATACTGCATTCCATATTGTTGGTGACTTGATTGCTCTGTTAGATATTCTAGATCTAGAAAAAGTGTTCTTAGTTGGACATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGAATTAAAGCTTTGGTGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="12489" stop="11270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12048" g_stop="11570" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12048" e_stop="11570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGTTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCT-AATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="12490" stop="11513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12049" g_stop="11811" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12049" e_stop="11811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCT-AATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="12879" stop="11877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12580" g_stop="12176" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12580" e_stop="12176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTTTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGAAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAATATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCAAGAACAGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAA-ATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353915" ref_strand="+" ref_description="SGN-E353915 [cTOS-10-L11]">
      <seq>gccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcttggtaatttattttgttttatactaattcctcttaatacatttttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="19494" stop="18506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19194" g_stop="18798" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E353915" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19194" e_stop="18798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</genome_strand>
        <mrna_strand>GCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554014" ref_strand="+" ref_description="SGN-E554014 [cTSC-2-P12]">
      <seq>ggggcgctctgactgtggatcccccgggctgcagggaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcttggtaatttattttgtttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21396" stop="18529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="97" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="187" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="316" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="499" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18825" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="901" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E554014" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCC</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTG-TTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203155" ref_strand="+" ref_description="SGN-E203155 [cLEB-3-D22](-)">
      <seq>tgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcatgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcctgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcttggtaatttattttgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="19465" stop="18529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19165" g_stop="18836" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="349"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E203155" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19165" e_stop="18836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTT</genome_strand>
        <mrna_strand>TGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCATGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCCTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357098" ref_strand="+" ref_description="SGN-E357098 [cTOS-22-L21]">
      <seq>aacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaggttatgcnttggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="19527" stop="18549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19459" g_stop="19454" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19227" g_stop="18853" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="381" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="394"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E357098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19459" e_stop="19454"/>
          <exon e_start="19227" e_stop="18853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTG</genome_strand>
        <mrna_strand>AACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCNTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746767" ref_strand="+" ref_description="SGN-E746767 [GI|47104515]">
      <seq>aaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaattaatctctatttagagactgaatctttacaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21387" stop="18564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21087" g_stop="21028" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="150" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="279" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="462" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18863" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="827" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="828" polyA_stop="839"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E746767" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21087" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAG</genome_strand>
        <mrna_strand>AAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733908" ref_strand="+" ref_description="SGN-E733908 [LB11BB01]">
      <seq>atcttcagcaggcagcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctcctttgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacactattttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctgatgtttgaatgcacattgatagagtttccattagaagtatttgccaacctacttttaccattagtagtatcttgttggattttcttatttcaactttgtttctattacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcgaaattaatctctatttagagactgaatcttttaacatttacaacaaagattatgcttggtaattcatttggtttttatactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21380" stop="18568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21080" g_stop="21028" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="143" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="272" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="455" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18863" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="819" r_length="364" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="863" polyA_stop="872"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733908" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21080" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAG</genome_strand>
        <mrna_strand>ATCTTCAGCAGGCAGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCTTTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................ATTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGATGTTTGAATGCACATTGATAGAGTTTCCATTAGAAGTATTTGCCAACCTACTTTTACCATTAGTAGTATCTTGTTGGATTTTCTTATTTCAACTTTGTTTCTATTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCGAAATTAATCTCTATTTAGAGACTGAATCTTT-TAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549082" ref_strand="+" ref_description="SGN-E549082 [TUS-67-C5](-)">
      <seq>gaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccgagcatcatattgctgatttttgaatgtgttatctgtttgcaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21389" stop="18595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21089" g_stop="21028" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="152" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20660" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="260" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095">
            <donor d_prob="0.525" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19564" g_stop="19454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="371" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18891" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="708" r_length="337" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E549082" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21089" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20660"/>
          <exon e_start="19564" e_stop="19454"/>
          <exon e_start="19227" e_stop="18891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCC-AGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTC</genome_strand>
        <mrna_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCGAGCATCATATTGCTGATTTTTGAATGTGTTATCTG-TTTGCAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544679" ref_strand="+" ref_description="SGN-E544679 [TUS-67-C5]">
      <seq>gaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21389" stop="18595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21089" g_stop="21028" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="152" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20660" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="260" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095">
            <donor d_prob="0.525" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19564" g_stop="19454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="371" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18892" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="707" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E544679" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21089" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20660"/>
          <exon e_start="19564" e_stop="19454"/>
          <exon e_start="19227" e_stop="18892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCT</genome_strand>
        <mrna_strand>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281030" ref_strand="-" ref_description="SGN-E281030 [cLER-7-D22]">
      <seq>cgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagctttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattttcttatttcaactctgtttttcttacccactccagcatcatattgctgatttttgaatgtgttatctgttttgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="19891" stop="18595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19591" g_stop="19454" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19227" g_stop="18894" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="472" r_length="334" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E281030" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19591" e_stop="19454"/>
          <exon e_start="19227" e_stop="18894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAAT</genome_strand>
        <mrna_strand>CGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCTTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTTTCTTACCCACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305444" ref_strand="+" ref_description="SGN-E305444 [cLEX-15-B15]">
      <seq>aaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttatgggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttctcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggcttgaggaagtgctggtgtttgaatgcacattgatagagtttctattagaagtatttgccaacctacttttaccattaatagtatcttgttggattatcttatttcaactctgtttctcttacacactccagcatcatattgctgatttttgaatgtgttatctggtttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21191" stop="18600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20891" g_stop="20855" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="166" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="349" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19227" g_stop="18900" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="677" r_length="328" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E305444" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20891" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAA</genome_strand>
        <mrna_strand>AAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTATGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCTCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTATCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGGTTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617625" ref_strand="+" ref_description="SGN-E617625 [66477]">
      <seq>gcggcggcggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctggtattggtgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacacggttttacttaggggtccaaagaactcgagggaggctgttaagcactttggtaaagcacctggtgtcccgcacagccacacgaagccttatgtncgtgccaagggaaggaagtttgagcgagcaagaggacaagagaaatagcaggaggcttacaaggtttgagcgacgtgcagatgtttgaatacccattcatagaggtttctaattaagaagtatttcccaacctactttttaccattatagttccatgttggattttcttattttcaactttgtttctctttacacaactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21366" stop="18643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21025" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="132" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="261" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="444" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18943" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="739" r_length="295" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E617625" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21025"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGA-AAGAGAAATAGCA-GAGGC-TACAAGGCTTGAG-GAAGTGCTGGTGTTTGAATGCACATTGATAGA-GTTTCT-ATT-AGAAGTATTTGCCAACCTAC-TTTTACCATTAATAGTATCTTGTTGGATTTTCTTA-TTTCAACTCTGTTTCTC-TTACAC-ACTCCA</genome_strand>
        <mrna_strand>GCGGCGGCGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGGTATTGGTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACG..................................................................................................................................................................................................................................GTTTTACTTAGGGGTCCAAAGAACTCGAGGGAGGCTGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCGCACAGCCACACGAAGCCTTATGTNCGTGCCAAGGGAAGGAAGTTTGAGCGAGCAAGAGGACAAGAGAAATAGCAGGAGGCTTACAAGGTTTGAGCGACGTGCAGATGTTTGAATACCCATTCATAGAGGTTTCTAATTAAGAAGTATTTCCCAACCTACTTTTTACCATT-ATAGTTCCATGTTGGATTTTCTTATTTTCAACTTTGTTTCTCTTTACACAACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570344" ref_strand="+" ref_description="SGN-E570344 [14913]">
      <seq>gcggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctgttattgttgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacacggttttacttaggggtccaaagaactcgagggaggctgttaagcactttggtaaagcacctggtgtcccgcacaggcacacgaagccttatgttcgtgccaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggctacaaggtttgaggaagtgcagatgtttgaatacacattcatagagtttctattagaagtatttcccaanctacttttaccattatagtttcatgttggattttcttatttcaactttgtttctcttacacactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21360" stop="18643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21060" g_stop="21025" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="126" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="255" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="438" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="18943" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="722" r_length="284" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E570344" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21060" e_stop="21025"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="18943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCA</genome_strand>
        <mrna_strand>GCGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTATTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACG..................................................................................................................................................................................................................................GTTTTACTTAGGGGTCCAAAGAACTCGAGGGAGGCTGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCGCACAGGCACACGAAGCCTTATGTTCGTGCCAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGTTTGAGGAAGTGCAGATGTTTGAATACACATTCATAGAGTTTCTATTAGAAGTATTTCCCAANCTACTTTTACCATT-ATAGTTTCATGTTGGATTTTCTTATTTCAACTTTGTTTCTCTTACACACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401903" ref_strand="+" ref_description="SGN-E401903 [PPC-5-P5]">
      <seq>ggcggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctgttattgtcgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacacggttttacttaggggtccaaagaactcgagggaggctgttaagcactttggtaaagcacctggtgtcccgcacagccacacgaagccttatgttcgtgccaagggaaggaagtttgagcgagcaagaggaaagagaaatagcagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21361" stop="18781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21061" g_stop="21025" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="127" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="256" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="439" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19081" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="586" r_length="147" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E401903" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21061" e_stop="21025"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGC</genome_strand>
        <mrna_strand>GGCGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTATTGTCGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACG..................................................................................................................................................................................................................................GTTTTACTTAGGGGTCCAAAGAACTCGAGGGAGGCTGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCGCACAGCCACACGAAGCCTTATGTTCGTGCCAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462884" ref_strand="+" ref_description="SGN-E462884 [cPRO-13-A17]">
      <seq>atctatcagcagcaggcggcggcggaggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctgttattgtcgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacacggttttacttaggggtccaaagaactcaagggaggctgttaagcactttggtaaagcacctggtgtcccgcacagccacacgaagccttatgttcgtgcaaagggaagggagtttgagcgagcaagaggaaagagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21384" stop="18790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21084" g_stop="21025" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="150" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="279" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="462" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19090" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="600" r_length="138" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E462884" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21084" e_stop="21025"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAAT</genome_strand>
        <mrna_strand>ATCTATCAGCAGCAGGCGGCGGCGGAGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTATTGTCGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACG..................................................................................................................................................................................................................................GTTTTACTTAGGGGTCCAAAGAACTCAAGGGAGGCTGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCGCACAGCCACACGAAGCCTTATGTTCGTGCAAAGGGAAGGGAGTTTGAGCGAGCAAGAGGAAAGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339508" ref_strand="+" ref_description="SGN-E339508 [cTOE-16-I17]">
      <seq>agcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgagcaagaggaaagagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21377" stop="18790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21077" g_stop="21028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="140" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="269" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="452" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19090" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="590" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E339508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21077" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAAT</genome_strand>
        <mrna_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305139" ref_strand="+" ref_description="SGN-E305139 [cLEY-18-A1]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20660" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="259" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095">
            <donor d_prob="0.525" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19564" g_stop="19454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="370" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19107" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="491" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E305139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20660"/>
          <exon e_start="19564" e_stop="19454"/>
          <exon e_start="19227" e_stop="19107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307542" ref_strand="+" ref_description="SGN-E307542 [cLEY-24-G17]">
      <seq>atgcggagcatcatgggtatcgatctagttgccggatgtaagtccaaaaagactaatcgcgttgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaatatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgatgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21248" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21042" g_stop="21028" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="105" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="234" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="417" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19107" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="538" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E307542" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21042" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</genome_strand>
        <mrna_strand>ATGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGATGTAAGTCCAAAAAGACTAATCGCGTTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAATATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGATGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257615" ref_strand="+" ref_description="SGN-E257615 [cLEG-45-D8]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaaggaagtttgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="18809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19109" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="582" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E257615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203154" ref_strand="+" ref_description="SGN-E203154 [cLEB-3-D22]">
      <seq>gcacgagggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaagggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcgcaaagggaatgaagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21360" stop="18811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21028" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="257" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="440" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19111" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="557" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E203154" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAG</genome_strand>
        <mrna_strand>GCA-CGAGGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAAGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAATGAAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270303" ref_strand="+" ref_description="SGN-E270303 [cLEM-1-P19]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="18831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19131" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="560" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E270303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337829" ref_strand="+" ref_description="SGN-E337829 [cTOE-17-P16]">
      <seq>agcagcatgcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaaaggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaagccttatgttcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21377" stop="18831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21077" g_stop="21028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="140" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="269" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="452" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19131" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="549" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E337829" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21077" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</genome_strand>
        <mrna_strand>AGCAGCATGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAAGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257380" ref_strand="+" ref_description="SGN-E257380 [cLEG-45-C8]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctatagctaggattgagaaagctggaggagaatgtttgacctttgatcagcttgctctcacagcccctcttgggcagaacactgttttgcttatgggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtgccacacagccacacaaagccttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="18835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19135" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="556" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E257380" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTT</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTATAGCTAGGATTGAGAAAGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCACAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTATGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTGCCACACAGCCACACAAAGCCTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291468" ref_strand="+" ref_description="SGN-E291468 [cLET-2-H9]">
      <seq>aacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaggggtccaaagaactcaagggaggccgttaagcactttggtaaagcacctggtgtcccacacagccacacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21385" stop="18844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21085" g_stop="21028" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="148" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="277" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="460" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19144" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="544" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E291468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21085" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAG</genome_strand>
        <mrna_strand>AACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343275" ref_strand="+" ref_description="SGN-E343275 [cTOF-17-D15]">
      <seq>cgagttttttttttttccattctccgaacagaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgtacggaacttctctctctcatcagtttgcatttttatgccttttctttcatcaatcaagtgaataattagagaatatgctgtagtgctcttcactagtatataataacaaaccgaggtgtttttagaattgtggtttgaatctcgtcctgcataggaaatgattatgtattcatggtagaggtaacattggctagtcatttgttttgtaatgctttcttgatcaggttttgcttaggggtccaaagaactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21410" stop="18899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21108" g_stop="21028" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="92" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="182" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="311" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19199" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="749" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E343275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21108" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAG</genome_strand>
        <mrna_strand>TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437017" ref_strand="+" ref_description="SGN-E437017 [cSTA-2-M13]">
      <seq>cggcggcggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctgttattgtcgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacacggttttacttaggggtccaaagaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21365" stop="18902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21065" g_stop="21025" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="131" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="260" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="443" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19201" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="470" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E437017" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21065" e_stop="21025"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCA</genome_strand>
        <mrna_strand>CGGCGGCGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTATTGTCGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACG..................................................................................................................................................................................................................................GTTTTACTTAGGGGTCCAAAGAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564453" ref_strand="+" ref_description="SGN-E564453 [2702]">
      <seq>cggcggcggaggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctgttattgtcgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggattgagcaaggctggaggagaatgtttgacctttgatcagctcgctctcagagcccctcttgggcagaacacggttttactttagggggtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21368" stop="19152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21068" g_stop="21025" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80">
            <donor d_prob="0.000" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="134" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="263" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="447" r_length="184" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19209" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="468" r_length="21" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E564453" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21068" e_stop="21025"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAG-AAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGC-TTA-GGGGTCCAA</genome_strand>
        <mrna_strand>CGGCGGCGGAGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTATTGTCGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTGAGCAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTCGCTCTCAGAGCCCCTCTTGGGCAGAACACG..................................................................................................................................................................................................................................GTTTTACTTTAGGGGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257387" ref_strand="+" ref_description="SGN-E257387 [cLEG-45-E8]">
      <seq>aaaaacctatcagcagcaggcggcggctggaggaaagtacaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcgataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgatgttgggactgttaccgatgatgttcgagcttatgaaatccccaaaatcaacgctactgccttgagattcacggaaacatctatagctaggattgataaagctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgcttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="19152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="152" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="281" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="464" r_length="183" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19215" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="477" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E257387" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGC-GGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGG</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCTGGAGGAAAGTACAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCGATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGATGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAATCCCCAAAATCAACGCTACTGCCTTGAGATTCACGGAAACATCTATAGCTAGGATTGATAAAGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGCTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257448" ref_strand="+" ref_description="SGN-E257448 [cLEG-45-D7]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaagtaagtccaaaaagactaaacgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacctgactggaaaggaggacaatattgctgctgttggtgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcaccgaaacagctagagctaggattgaaaatgctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="19152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="463" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19227" g_stop="19221" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="470" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E257448" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
          <exon e_start="19227" e_stop="19221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGC</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAAGTAAGTCCAAAAAGACTAAACGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACCTGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGCTGTTGGTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACCGAAACAGCTAGAGCTAGGATTGAAAATGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT..................................................................................................................................................................................................................................GTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317277" ref_strand="+" ref_description="SGN-E317277 [cTOA-28-B6]">
      <seq>agcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacactgtacggaacttctctctctcatcagtttgcatttttatgccttttctttcatcaatcaagtgaataattagagaatatgctgtagtgctcttcactagtatataataacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21377" stop="19040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21077" g_stop="21028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="140" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="269" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19340" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="566" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E317277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21077" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACC</genome_strand>
        <mrna_strand>AGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233460" ref_strand="+" ref_description="SGN-E233460 [cLED-9-D8]">
      <seq>ggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21367" stop="19154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21067" g_stop="21028" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="130" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="259" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19454" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="442" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E233460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21067" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT</genome_strand>
        <mrna_strand>GGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268277" ref_strand="+" ref_description="SGN-E268277 [cLEM-3-A14]">
      <seq>cgaacagaaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21395" stop="19155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21095" g_stop="21028" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="158" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="287" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19455" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="469" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E268277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21095" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACAC</genome_strand>
        <mrna_strand>CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313284" ref_strand="+" ref_description="SGN-E313284 [cTOA-13-C3]">
      <seq>gcggagcatcatgggtatcgatctagttgccggaggtgagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggcagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21248" stop="19156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21040" g_stop="21028" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="103" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="232" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19456" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="413" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E313284" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21040" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACA</genome_strand>
        <mrna_strand>GCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTGAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281970" ref_strand="+" ref_description="SGN-E281970 [cLES-2-E4]">
      <seq>agcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagcttgctctcagagcccctcttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21374" stop="19161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21074" g_stop="21028" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="266" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19461" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="442" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E281970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21074" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCA</genome_strand>
        <mrna_strand>AGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465145" ref_strand="+" ref_description="SGN-E465145 [cPRO-20-A8]">
      <seq>agcaggcggcggcggagagtagaagcagcaggcggagcatcatcatgggtatcgatctagtggccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttcttgcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgaccggaaaggaggacaatattgctgttattgtcgggactgttaccgatgatgttcgagcttatgaagtccctaaaatcaaggttactgcattgagattcactgaaacagctagagctaggatttgagaaggctgggagagaaatgttgaccttttgatcagctcgctctcagagcccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21369" stop="19167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21074" g_stop="21028" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.787"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.79"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="266" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19467" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="438" r_length="172" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E465145" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21074" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGA-TTGAGAAGGCTGGAGGAGAATGTTTGACC-TTTGATCAGCTTGCTCTCAGAGCCCCTCT</genome_strand>
        <mrna_strand>AGCAGGCGGCGGCGGAGAGTAGAAGCAGCAGGCGGAGCATCATCATG...................................................................................GGTATCGATCTAGTGGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTTGCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACCGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTATTGTCGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCTAAAATCAAGGTTACTGCATTGAGATTCACTGAAACAGCTAGAGCTAGGATTTGAGAAGGCTGGGAGAGAAATGTTGACCTTTTGATCAGCTCGCTCTCAGAGCCCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293713" ref_strand="+" ref_description="SGN-E293713 [cLET-21-J6]">
      <seq>aaaaacctatcagcagcaggcggcggcggaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattgagaaggctggaggagaatgtttgacctttgatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21388" stop="19186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21088" g_stop="21028" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="151" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="280" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19486" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="431" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E293713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21088" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGC</genome_strand>
        <mrna_strand>AAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313408" ref_strand="+" ref_description="SGN-E313408 [cTOA-13-C4]">
      <seq>ggcggcggaggaaagtagaagcatcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggatacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcaccgaaacagctagagctaggattgagaaggctggaggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21367" stop="19204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21067" g_stop="21028" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="130" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="259" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19504" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="392" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E313408" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21067" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAAT</genome_strand>
        <mrna_strand>GGCGGCGGAGGAAAGTAGAAGCATCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGATACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACCGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282111" ref_strand="+" ref_description="SGN-E282111 [cLES-4-I3]">
      <seq>agcatgcggcggcggaggtaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagctaggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21374" stop="19222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21074" g_stop="21028" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="138" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="267" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19522" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="382" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E282111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21074" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGCGGCGGCGGAGG-AAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTG</genome_strand>
        <mrna_strand>AGCATGCGGCGGCGGAGGTAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279151" ref_strand="-" ref_description="SGN-E279151 [cLEL-4-L5](-)">
      <seq>gcacgagaggaaagtagaagcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcacggaaacagctagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21362" stop="19229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21028" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="129" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="258" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19529" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="366" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E279151" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279151" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCT</genome_strand>
        <mrna_strand>GCACGAGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247942" ref_strand="+" ref_description="SGN-E247942 [cLEF-47-H6]">
      <seq>agcagcaggcggagcatcatgggtatcgatctagttgccggaggtaagtccaaaaagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggactgttaccgatgatgttcgagcttatgaagtcccaaaaatcaaggttactgcattgagattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21348" stop="19245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21048" g_stop="21028" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="111" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="240" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19545" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="332" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21048" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCAC</genome_strand>
        <mrna_strand>AGCAGCAGGCGGAGCATCATG...................................................................................GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277272" ref_strand="-" ref_description="SGN-E277272 [cLEL-3-M24](-)">
      <seq>gcacgagggaaagtagaagctgcaggcggagcatcatgggtatcgaggtagttgccggaggtaagtccaaacagactaagcgcattgcaccaaaatccgacgatgtttatctcaagcttctcgtcaagttgtaccgatttctatcacggaggactggtagtaagttcaatgctgtgatactgaagagactcttcatgagcaagatcaataaagctccattgtctctatcacgtttggttacttacatgactggaaaggaggacaatattgctgttgttgttgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="21360" stop="19307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21066" g_stop="21028" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20944" g_stop="20855" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20767" g_stop="20639" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="257" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19636" g_stop="19607" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="287" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E277272" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277272" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21066" e_stop="21028"/>
          <exon e_start="20944" e_stop="20855"/>
          <exon e_start="20767" e_stop="20639"/>
          <exon e_start="19636" e_stop="19607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTGAATATTTTTTTTTAGAATATTCCTGCATTTGTTTTCACGGACGCCATAGCTTGATTTTGTTATTTTGATTTTCTATTTAGGGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAGGTATTTTATTTCACTATTGTCTTTATAGATTTAGTGCATTTTTGGTTACTATACTGAGAATTGGATGTTTAATTGTGTGAATAATAGTTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAGGTATTTTATTCATTCATTTTAGCTTTGTTTCACCTTACACTGTTTGGATAGTTTCATAATGTTGTATTGATTGTATCATTTTATGTCGTTGTGTAATATTATGATCAATAATTTGAATTATAAACTTACAAGTAAATAGCATACAGTGTAGAGCTAGACCTATCTAATGTGCCTTTATTTAGTGTTACCATACAATAAAATTTGTATAACAATCAAACTAACAGTTAATTTATCCAACAACACAATGAAATACAATGTAACAACCATCCAAACATGCCTGCTAGTGATCTTTGATTGGACACATCTACAGCGAGCAGTTATCAAAATATTCTTGCTTTATACTAGCATCGTTAAATTGTTAATGGTATTAACGACGTCCTGAGTAGCATTTATGTGAATGAAATTGCTAAAAAGTAGTAATATGCAGCGATTAGGACTAAAGGAGTGAGGAATTCACATATCAGAGTGTACAATATAGCTTAACACTTGGGGGCCATTTATATGCCGGACAGGAATATAGATAGTCTTGTGATAGAAATTAACTACTGCGTATTTCCTTTTTTGGTTACTTATCCTAGGATGACTTATATTCGCTGTGATAAGTTATCCATTCTAGTGGATGGATTAATACAAGTATCAGGATTACTATGAAAATGGAAAAAATACTCCCAAGGTTGCTCAAAACACTTTTTCTATTGAAGAAGGTGGAGGGTTATCTTTGTATACAACTTTTCCGAATGTCCCTTTTTTTATTTCTTATCCTACATTGTATAAAGTGATGCATAATTTTGCATATACAGCAAAGTTATGTCCCATGATTATTTATGCAATGCATAATCTATTCCTCAACCATGCAGAGATTTATATTAGAATTGAAATGTTAGATCTGTAATCAGAGTATGTTCCAGGATTGTTTGTTCTTGTACAGCAAAGTAAATAACCCTTGATATTACTGAAGTACTATACAGTTTATCTGAATTGGCTTGTGTATGATGATGATAGGAGGACAATATTGCTGTTGTTGTTGGGACT</genome_strand>
        <mrna_strand>GCA-CGAGGGAAAGTAGAAGCTGCAGGCGGAGCATCATG...................................................................................GGTATCGAGGTAGTTGCCGGAGGTAAGTCCAAACAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG.......................................................................................TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACAATATTGCTGTTGTTGTTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451997" ref_strand="+" ref_description="SGN-E451997 [cSTS-15-E22]">
      <seq>taacggccccgtcagtctaagcagttactctttttaacggtgaccggagatacactgctggcgatgaacacgtcgaagatgcgccggaaagttgttccggcggtagaaaacggagactccgccgacaaatttgaccaagtcctcttatccgccgccatctgcaacggtgaagatgttgggccttttgtgcgcaagggttttgcttccggtaagccggagacagtacttcttcatctccgtcactttgcgcgatccaaggaatctgaaattgaggatgtatgtagagcacactacgaggactttatcaccgccgttgacgatctccgatctctgctctccgatgttgattctcttaaatcgtctctgtcaaactcgaacagtcaacttcagtccgtcgctgtgcctttgcttaccactcttgactcattcgttgaagctcgaaacaaatgcaaaaacataactcttgctatccaatcgcttcggacttgcgttcagctagtcgagctttgctcccgagccaatcgtcatctttcagagaacaatttttacatggcgttgaagtgtgtggactcgattgagagagagttcatgaacaaaacaccgtctactactctccggcgaatgcttgaaaagcagatccctgcgattcgttcacatattgaacggagaatcaccaaagagtttggtgattggcttgtcgagatccgtgtagttagccgaaatttagggcaactagctatcggacaagcatcagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="23672" stop="25028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23972" g_stop="24728" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E451997" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23972" e_stop="24728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGGCCCCGTCGTTCT-AGCAGTTACTCTTTTTAACGGTGACAGTAGATACACAGCTGGCGATGAACACGTCGAAGATGCGCCGGAAAGTTGTTCCGGCGGTAGAAAACGGAGACTCCGCCGACAAACTTGACCAGGTCCTCCTATCCGCCGCCATCTGCAACGGTGAAGATGTTGGGCCTTTCGTGCGTAAGGGTTTTGCTTCCGGTAAGCCGGAGACAGTACTTCTTCATCTCCGTCACTTTGCTCGATCGAAGGAATCTGAAATTGAAGATGTATGTAGAGCACACTACGAGGACTTCATCACCGCCGTTGACGATCTCCGATCTCTGCTCTCCGATGTTGATTCTCTTAAATCGTCCCTGTCAAACTCGAACAGTCAACTTCAGTCCGTTGCTGTGCCTTTGCTAACCACTCTTGACTCATTCGTTGAAGCTCGAAACAAATGCAAAAACATTACTCTTGCTATTCAATCGCTTCGGACTTGCGTTCAGCTTGTCGAGCTTTGCTCCCGAGCCAATCGTCATCTTTCAGAGAATAATTTTTACATGGCGTTGAAGTGTGTGGACTCGATTGAGAGAGAGTTTATGAACAAAACACCATCTACTACTCTCAGGCGAATGCTTGAGAAGCAGATCCCTGCGATTCGTTCACATATTGAACGGAGAATCACCAAAGAGTTTGGTGATTGGCTTGTCGAGATCCGTGTAGTTAGCCGAAATTTAGGGCAACTAGCTATCGGACAAGCATCAGCATC</genome_strand>
        <mrna_strand>TAACGGCCCCGTCAGTCTAAGCAGTTACTCTTTTTAACGGTGACCGGAGATACACTGCTGGCGATGAACACGTCGAAGATGCGCCGGAAAGTTGTTCCGGCGGTAGAAAACGGAGACTCCGCCGACAAATTTGACCAAGTCCTCTTATCCGCCGCCATCTGCAACGGTGAAGATGTTGGGCCTTTTGTGCGCAAGGGTTTTGCTTCCGGTAAGCCGGAGACAGTACTTCTTCATCTCCGTCACTTTGCGCGATCCAAGGAATCTGAAATTGAGGATGTATGTAGAGCACACTACGAGGACTTTATCACCGCCGTTGACGATCTCCGATCTCTGCTCTCCGATGTTGATTCTCTTAAATCGTCTCTGTCAAACTCGAACAGTCAACTTCAGTCCGTCGCTGTGCCTTTGCTTACCACTCTTGACTCATTCGTTGAAGCTCGAAACAAATGCAAAAACATAACTCTTGCTATCCAATCGCTTCGGACTTGCGTTCAGCTAGTCGAGCTTTGCTCCCGAGCCAATCGTCATCTTTCAGAGAACAATTTTTACATGGCGTTGAAGTGTGTGGACTCGATTGAGAGAGAGTTCATGAACAAAACACCGTCTACTACTCTCCGGCGAATGCTTGAAAAGCAGATCCCTGCGATTCGTTCACATATTGAACGGAGAATCACCAAAGAGTTTGGTGATTGGCTTGTCGAGATCCGTGTAGTTAGCCGAAATTTAGGGCAACTAGCTATCGGACAAGCATCAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278802" ref_strand="+" ref_description="SGN-E278802 [cLER-2-H3]">
      <seq>tccagttacagacgtcaaatattatgcctgcatttccttatgttgcaccgttttcgtgtacggtgcctgattgctgtagaatagtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattcatacgtctatcggtggtgttacccaagcaatgcagatggcagctaacatggctgtgtttgaacgcgcttgtgattttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25145" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25445" g_stop="25830" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E278802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25445" e_stop="25830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCT</genome_strand>
        <mrna_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585518" ref_strand="+" ref_description="SGN-E585518 [67979]">
      <seq>atattatgcctgcatttccttatgttgcaccgttttcgtgtacggtgcctgattgctgtagaattgtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattaatacgtctatcggtggtgttacccaagcaatgcagatggcggctaatatggctgtgtttgaacgtgcttgcgactttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgtgatgctgctgaagagatgctttcgggtctgcttaagcaaaaggttgatggtttccttttgttgattgagaatgtgaattggatggccgatgagcctctgcagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcagatactgcctgttcaagttcttaagagagttttgcaagatgttctgtttcatatatcagagatgattgttggggctttactaggggaatcagttaacaaggttcaacgtgaatgctgttatggctcttaatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25163" stop="26469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25463" g_stop="26170" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E585518" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25463" e_stop="26170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAA-AAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCC</genome_strand>
        <mrna_strand>ATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATTGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTAATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCGGCTAATATGGCTGTGTTTGAACGTGCTTGCGACTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGTGATGCTGCTGAAGAGATGCTTTCGGGTCTGCTTAAGCAAAAGGTTGATGGTTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGAGCCTCTGCAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAGATACTGCCTGTTCAAGTTCTTAAGAGAGTTTTGCAAGATGTTCTGTTTCATATATCAGAGATGATTGTTGGGGCTTTACTAGGGGAATCAGTTAACAAGGTTCAACGTGAATGCTGTTATGGCTCTTAATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205095" ref_strand="+" ref_description="SGN-E205095 [cLEC-16-G3]">
      <seq>agaatagtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattcatacgtctatcggtggtgttacccaagcaatgcagatggcagctaacatggctgtgtttgaacgcgcttgtgattttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25222" stop="26272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25522" g_stop="25972" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E205095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25522" e_stop="25972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACAC</genome_strand>
        <mrna_strand>AGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413487" ref_strand="+" ref_description="SGN-E413487 [STM-18-A1]">
      <seq>gatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattaatacgtctatcggtggtgttacccaagcaatgcagatggcggctaatatggctgtgtttgaacgtgcttgcgactttatctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgtgatgctgctgaagagatgctttcgggtctgcttaagcaaaaggttgatggtttccttttgttgattgagaatgtgaattggatggccgatgagcctctgcagagtggaaatgaatatgtgcatgagttgattatttttcttgaaacactaacttctactgcccagcagatactgcctgttcaagttcttaagagagttttgcaagatgttctgtttcatatatcagagatgattgttggggctttactaggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctcttatctgaagtagatgctagtcagctgaaagcagcattggccgagtccaggcagttggttaatctactcttgagcaatcatccagaaaatttcctgaatccagttattagagaaagaagttataatgctttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25291" stop="26604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25591" g_stop="26304" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E413487" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25591" e_stop="26304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGAC</genome_strand>
        <mrna_strand>GATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTAATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCGGCTAATATGGCTGTGTTTGAACGTGCTTGCGACTTTATCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGTGATGCTGCTGAAGAGATGCTTTCGGGTCTGCTTAAGCAAAAGGTTGATGGTTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGAGCCTCTGCAGAGTGGAAATGAATATGTGCATGAGTTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAGATACTGCCTGTTCAAGTTCTTAAGAGAGTTTTGCAAGATGTTCTGTTTCATATATCAGAGATGATTGTTGGGGCTTTACTAGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCTTATCTGAAGTAGATGCTAGTCAGCTGAAAGCAGCATTGGCCGAGTCCAGGCAGTTGGTTAATCTACTCTTGAGCAATCATCCAGAAAATTTCCTGAATCCAGTTATTAGAGAAAGAAGTTATAATGCTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472279" ref_strand="+" ref_description="SGN-E472279 [cSTB-28-O5]">
      <seq>gatgtggtggaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattaatacgtctatcggtggtgttacccaagcaatgcagatggcggctaatatggctgtgtttgaacgtgcttgcgactttatctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgtgatgctgctgaagagatgctttcgggtctgcttaagcaaaaggttgatggtttccttttgttgattgagaatgtgaattggatggccgatgagcctctgcagagtggaaatgaatatgtgcatgagttgattatttttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25291" stop="26266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25591" g_stop="25966" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E472279" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25591" e_stop="25966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGGTG-AAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTG</genome_strand>
        <mrna_strand>GATGTGGTGGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTAATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCGGCTAATATGGCTGTGTTTGAACGTGCTTGCGACTTTATCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGTGATGCTGCTGAAGAGATGCTTTCGGGTCTGCTTAAGCAAAAGGTTGATGGTTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGAGCCTCTGCAGAGTGGAAATGAATATGTGCATGAGTTGATTATTTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458258" ref_strand="+" ref_description="SGN-E458258 [cPRO-5-M3]">
      <seq>ttatctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgtgatgctgctgaagagatgctttcgggtctgcttaagcaaaaggttgatggtttccttttgttgattgagaatgtgaattggatggccgatgagcctctgcagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcagatactgcctgttcaagttcttaagagagttttgcaagatgttctgtttcatatatcagagatgattgttggggctttactaggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttaatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctcttatctgaagtagatgctagtcagctgaaagcagcattggccgagtccaggcagttggttaatctactcttgagcaatcatccagaaaatttcctgaatccagttattagagaaagaagttataatgctttggactaccgcaaagttgttactatctcagaaaagatgaaggatcaaacagacaggctttttgggtcctttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattnattaaaagattgaanggatgtcactgagtctgcaaatctctgtatgttatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25437" stop="26775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25736" g_stop="26475" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E458258" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25736" e_stop="26475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAA-GGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTC</genome_strand>
        <mrna_strand>TTATCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGTGATGCTGCTGAAGAGATGCTTTCGGGTCTGCTTAAGCAAAAGGTTGATGGTTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGAGCCTCTGCAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAGATACTGCCTGTTCAAGTTCTTAAGAGAGTTTTGCAAGATGTTCTGTTTCATATATCAGAGATGATTGTTGGGGCTTTACTAGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTAATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCTTATCTGAAGTAGATGCTAGTCAGCTGAAAGCAGCATTGGCCGAGTCCAGGCAGTTGGTTAATCTACTCTTGAGCAATCATCCAGAAAATTTCCTGAATCCAGTTATTAGAGAAAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCAGAAAAGATGAAGGATCAAACAGACAGGCTTTTTGGGTCCTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTNATTAAAAGATTGAANGGATGTC-ACTGAGTCTGCAAATCTCTGTATGTTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372915" ref_strand="+" ref_description="SGN-E372915 [TUS-32-H21]">
      <seq>agctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcaaatattgcctgttcaagttctgaagagagttttgcaagatgttctgtgtcatatatcagagatgattgttggggctttactgggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgttgatatccgtatgttggaatcatttgctgaaaaccaagctcctctcctatctgaagcagatgctagtcagctgaaagcagcattgggcgagtccaggcagttggttaatctactcttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcacagttgttactatctcggaaaagatgaaggatcaaagtgacagactttttgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25457" stop="26666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25757" g_stop="26366" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E372915" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25757" e_stop="26366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTC</genome_strand>
        <mrna_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCACAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292818" ref_strand="+" ref_description="SGN-E292818 [cLET-11-M3]">
      <seq>agctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25457" stop="26281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25757" g_stop="25981" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E292818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25757" e_stop="25981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTA</genome_strand>
        <mrna_strand>AGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460863" ref_strand="+" ref_description="SGN-E460863 [cPRO-33-J15]">
      <seq>ctgcagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcagatactgcctgttcaagttcttaagagagttttgcaagatgttctgtttcatatatcagagatgattgttggggctttactaggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttaatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctcttatctgaagtagatgctagtcagctgaaagcagcattggccgagtccaggcagttggttaatctactcttgagcaatcatccagaaaatttcctgaatccagttattagagaaagaagttataatgctttggactaccgcaaagttgttactatctcagaaaagatgaaggatcaaacagacaggctttttgggtcctttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggatgtcaactgagtctgcaaatctctgtatgttatgttcctagggagatctccatattgtagttgtgttgattacttgctgatttcatatctagcttccttttctgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25621" stop="26844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25921" g_stop="26553" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E460863" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25921" e_stop="26553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTG</genome_strand>
        <mrna_strand>CTGCAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAGATACTGCCTGTTCAAGTTCTTAAGAGAGTTTTGCAAGATGTTCTGTTTCATATATCAGAGATGATTGTTGGGGCTTTACTAGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTAATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCTTATCTGAAGTAGATGCTAGTCAGCTGAAAGCAGCATTGGCCGAGTCCAGGCAGTTGGTTAATCTACTCTTGAGCAATCATCCAGAAAATTTCCTGAATCCAGTTATTAGAGAAAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCAGAAAAGATGAAGGATCAAACAGACAGGCTTTTTGGGTCCTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGATGTCAACTGAGTCTGCAAATCTCTGTATGTTATGTTCC-TAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTCTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372914" ref_strand="+" ref_description="SGN-E372914 [TUS-32-H21](-)">
      <seq>tgcctgttcaagttctgaagagagttttgcaagatgttctgtgtcatatatcagagatgattgttggggctttactgggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgttgatatccgtatgttggaatcatttgctgaaaaccaagctcctctcctatttgaagcagatgctagtcagctgaaagcagcattgggcgagtccaggcagttggttaatctacttttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcaaagttgttactatttcggaaaagatgaaggatcaaagtgacagactttttgggtcttttggcacaaggggagctaagcagaacactaaaaagaaattttttgatgcattaattaaaagattgaaggacgtcaactgagtttgcgaatctttgtatgttatgttccttagggagatttccatattgtagttgtgttgattacttgctgatttcatatctagcttcctttttttttgcaaattgcctaccattttacgtaattttttcctcccctagttccacattgattgctgtattatttttcagagcatacatatttttttgcaactcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25697" stop="26947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25997" g_stop="26623" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E372914" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25997" e_stop="26623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATAC</genome_strand>
        <mrna_strand>TGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATTTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTTTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATTTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATTTTTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTTTGCGAATCTTTGTATGTTATGTTCCTTAGGGAGATTTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTTTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTTTTCAGAGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607169" ref_strand="+" ref_description="SGN-E607169 [23128]">
      <seq>agggcaagatgtctgttcatatatcagagatgattgttggggctttactaggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttaatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctcttagctgaagcagatgctagtcagctgaaagcagcattggccgagtccaggcagttggttaatctactcttgagcaatcatccagaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcaaagttgttactatctcagaaaagatgaaggatcaaacagacaggctttttgggtcctttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggatgtcaactgagtctgcaaatctctgtatgttatgttcctagggagatctcatattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25725" stop="26798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26022" g_stop="26498" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E607169" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26022" e_stop="26498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTA</genome_strand>
        <mrna_strand>AGGGCAAGATG-TCTGT-TCATATATCAGAGATGATTGTTGGGGCTTTACTAGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTAATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCTTAGCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGCCGAGTCCAGGCAGTTGGTTAATCTACTCTTGAGCAATCATCCAGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCAGAAAAGATGAAGGATCAAACAGACAGGCTTTTTGGGTCCTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGATGTCAACTGAGTCTGCAAATCTCTGTATGTTATGTTCC-TAGGGAGATCT-CATATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413488" ref_strand="-" ref_description="SGN-E413488 [STM-18-A1]">
      <seq>tatatcagagatgattgtgggggctttactaggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctcttatctgaagtagatgctagtcagctgaaagcagcattggccgagtccaggcagttggttaatctactcttgagcaatcatccagaaaatttcctgaatccagttattagagaaagaagttataatgctttggactaccgcaaagttgttactatctcagaaaagatgaaggatcaaacagacaggctttttgggtcctttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggatgtcaactgagtctgcaaatctctgtatgttatgttcctagggagatctccatattgtagttgtgttgattacttgctgatttcatatctagcttccttttctgcaaattgcctaccatttacgtatttttttcctcccgtagttccacattgattgctgtattgttcttcagagcatattcttttctattttgtggtcaaattcttttgcaactcagaaaaaaaaaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25743" stop="26947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26043" g_stop="26623" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="624"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E413488" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413488" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26043" e_stop="26623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATAC</genome_strand>
        <mrna_strand>TATATCAGAGATGATTGTGGGGGCTTTACTAGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCTTATCTGAAGTAGATGCTAGTCAGCTGAAAGCAGCATTGGCCGAGTCCAGGCAGTTGGTTAATCTACTCTTGAGCAATCATCCAGAAAATTTCCTGAATCCAGTTATTAGAGAAAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCAGAAAAGATGAAGGATCAAACAGACAGGCTTTTTGGGTCCTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGATGTCAACTGAGTCTGCAAATCTCTGTATGTTATGTTCC-TAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCC---TTTTCTGCAAATTGCCTACCA-TTTACGTATTTTTTTCCTCCCGTAGTTCCACATTGATTGCTGTATTGTTCTTCAGAGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356588" ref_strand="+" ref_description="SGN-E356588 [cTOS-21-D9]">
      <seq>agttggttaatctactcttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcaaagttgttactatctcggaaaagatgaaggatcaaagtgacagactttttgggtcttttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggacgtcaactgagtctgcgaatctctgtatgttatgttccttagggagatctccatattgtagttgtgttgattacttgctgatttcatatctagcttcctttttttctgcaaattgcctaccattttacgtaattttttcctcccctagttccacattgattgctgtattattcttcagagcatacatattcttttgcaactcagatatagtctttttatctcatgaaactagtctcttctcgtttggcttctttttccgtagaataattacatcttctcttcgatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25922" stop="27026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26222" g_stop="26728" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E356588" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26222" e_stop="26728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTATT</genome_strand>
        <mrna_strand>AGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313277" ref_strand="+" ref_description="SGN-E313277 [cTOA-18-N19]">
      <seq>ccttataaaaaaaaaacggtgaactttggaacaacgaaaaacatcaatgttcacagaaatgtcaatagcttcaacaagaagtattttttacctctttctcttcttttttgccactgcagtttcaagaaatgagaagctatcagcttatgaagagctacagcgttatgatttcccaatggggattcttccaaaaggagtaaaagactacaaattaaaccccaaaacaggtgaattctcagcttatcttaattctacctgcagcttcaaattggagaactcatatcaactgaattacaagcctgttataaaaggagttatatctaaaggcaggcttaggaaactgtgtggtgttagtgtaaaggtggtgttgctatggcttaacattgttgaagttaacagaaaaggtaagaatcttgagttttcagttggactcgcttcggcgaattttccggttgagaattttgaggaatgtccacagtgtggacgtggattgaattgtgttgatgaagatgacaatgttgtgtcttccttttaactactttgattgaaatctagttgtttttttttttttgttttctggtggtggaaatgatgtgtttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="26955" stop="28157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27255" g_stop="27857" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E313277" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27255" e_stop="27857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAT-AAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTG</genome_strand>
        <mrna_strand>CCTTATAAAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713155" ref_strand="+" ref_description="SGN-E713155 [FB06DE04]">
      <seq>gttcacagaaatgtcaatagcttcaacaagaagtattttttacctctttctcttcttttttgccactgcagtttcaagaaatgagaagctatcagcttacgaagagctacagcgttatgatttcccaatggggattcttccaaaaggagtaaaagactacaaattaaaccccaaaacaggtgaattctcagcttatcttaattctacctgcagcttcaaattggagaactcatatcaactgaattacaagcctgttataaaaggagttatatctaaaggcaggcttaggaaactgtgtggtgttagtgtaaaggtggtgttgctatggcttaacattgttgaagttaacagaaaaggtaagaatcttgagttttcagttggactcgcttcggcgaattttccggttgagaattttgaggaatgtccacagtgtggacgtggattgaattgtgttgatgaagatgacaatgttgtgtcttccttttaactactttgattgaaatctagttgttgtttttttttttgttttctggggggggaaatgatgtgtttttttgaatagctatggtatttagggctatttgatcacgaaatatgtatcttatgcaacgaaaattctggatttgaactttgtgtaaataatattgttaacgagtttatggttcattacgttaatcactcgagttnnccnnnnnannaaaaaaaaaaaaaaaaaaaaaanncccccgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="27002" stop="28288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27302" g_stop="27985" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="721"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E713155" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27302" e_stop="27985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTT-TTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTGAATAGCTATGGTATTTAGGGCTATTTGATCACGAAATATGTATCTTATGCAACGAAGATTTTGGATTTGAACTTTGTGTATAGATAATATTGTTAACGAGTTTATGGTTCATTACGTTAATCACTCGA</genome_strand>
        <mrna_strand>GTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTACGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTGTTTTTTTTTTTGTTTTCTGGGGGGGGAAATGATGTGTTTTTTTGAATAGCTATGGTATTTAGGGCTATTTGATCACGAAATATGTATCTTATGCAACGAAAATTCTGGATTTGAACTTTGTGTA-A-ATAATATTGTTAACGAGTTTATGGTTCATTACGTTAATCACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338920" ref_strand="+" ref_description="SGN-E338920 [cTOE-21-B6]">
      <seq>agcttctccggtcatcggcgatgaggattctcagtccccgacggcatacgagattctacaggaatacgatattccggcagggatacttccgaaaggcgtaacaaggtacgaactcgacaaaacaacgggcaatttcgccgtttactttaacaaatcgtgcagtttcagcataagcggctatgatctcaagtatatgagtaaaattactggtaaaatctctaaggatcggcttgcgaaactgaaaggcgtacaggtgaaactgctttttttttttgtcaatattgtgggagttactcgtgacggcgatgatctcggtttctccgtcggtgtttcttctgttgattttgcaattgagtacttctatgaaccgccagagtgtggatgtggatttgattgtgtcaattctggagaaaacgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="32877" stop="33897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33177" g_stop="33597" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E338920" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33177" e_stop="33597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACAGGAATACGATATTCCGGCAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAACTTGAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGACGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTTCTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGTACT</genome_strand>
        <mrna_strand>AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACAGGAATACGATATTCCGGCAGGGATACTTCCGAAAGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAAACTGAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGACGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTTCTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="35431" stop="36326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35731" g_stop="36052" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35731" e_stop="36052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ACTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAAATA-AAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="35431" stop="36326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35731" g_stop="36016" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35731" e_stop="36016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ACTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="35432" stop="36478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35732" g_stop="36178" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35732" e_stop="36178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ACTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAAATA-AAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGAGGAGAGACG-CTGGCAAATTTTAGCTAATGTTTACTATGGAGCACAATTAAATCAAACCCTAGTTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347597" ref_strand="+" ref_description="SGN-E347597 [cTOF-26-B3]">
      <seq>ggtaactacgaacaagatatgccttctgtagcccttcccttatgcatcctcctactcctactccaactctctgcagcttcaccggtcgtcggcgatgaggattctcagtccccgacggcgtatgagattcttcaggaatacgactttccggtagggatacttccgaagggcgtaacaaggtacgaactcgacaaaacaacgggcaatttcgccgtttactttaacaaatcgtgcagtttcagcataagcggctataatctcaagtatatgagtaaaattactggtaaaatctctaaggatcgacttgcgaacttgaaaggcgtacaggtgaaagtgcttttgttttggattaatattgtcgaagttactcgtgacggcgacgatctcgatttctccgtcggtattgcttctgctgattttgcaattgataacttctatgaatcgccacagtgtggatgtggatttgattgtgtcaattctggagaaaatggcacaggtaagttcgatttgaagctgcttatcacttcgtcttgaatcgtaaattttcagaaatcgactgtagattaagatgttttaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="45096" stop="46275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45396" g_stop="45975" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E347597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45396" e_stop="45975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGAT</genome_strand>
        <mrna_strand>GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709800" ref_strand="+" ref_description="SGN-E709800 [FA53AG12]">
      <seq>ccccgttacaagatatgccttctgtagcccttcccttatgcatcctcctcctcctcctcctactctctgcagcttcaccggtcgtcggcgatgaggattctcagtccccgacggcgtatgagattcttccggaatacgactttccggtagggatacttccgaagggcgtaacaaggtacgaactcgacaaaacaacgggcaatttcgccgtttactttaacaaatcgtgcagtttccgcataagcggctataatctcaagtatatgagtaaaattactggtaaaatctctaaggatcgacttgcgaacttgaaaggcgtaccaggcgaaagtgcttttgttttggattaatattgtcgaagttactcgtgacggcgacgatctcgatttctcccgtcggtattgcttctgctgattttgcaattgataacttctatgaatcgccacagtgtggatgtggatttgattgtgtccattctggagaaaatggcaccggtaagttcgatttgaagctgcttatcacttcgtcttgaatcgtaaattttcacaaatcgactgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="45107" stop="46258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45401" g_stop="45958" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E709800" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45401" e_stop="45958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACG-AACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTA-CAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCT-CCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGA</genome_strand>
        <mrna_strand>CCCCGTTACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTCCTCCTCCTCCTACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCCGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCCGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACCAGGCGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCCATTCTGGAGAAAATGGCACCGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCACAAATCGACTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471397" ref_strand="+" ref_description="SGN-E471397 [cSTB-23-J24]">
      <seq>caagatatgccttctgtagcccttcccttatgcatcttcctcttcctcctactctctgcagcttctccggtcatcggcgacgaggattctcagtgcccgacggtatacgagattctacaggaatacgattttccggtagggatacttccgaagggcgtaacaaagtacgaactcaacaaaacgacgggcaatttcgctgtttactttaacaaatcgtgcagtttcagcataagcggctataatctcaagtatatgagtaagattactggtaaaatttctaaggatcgacttgcgaacttgacaggcgtacaggtgaaactgcttttgttttggatcaatattgtggaagttactcgtgacggcgacgatctagatttctccgtcggtattgcttctgctgattttgcaattgataacttctatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="45108" stop="46137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45408" g_stop="45837" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E471397" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45408" e_stop="45837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAAT</genome_strand>
        <mrna_strand>CAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCTTCCT-CT--TCCTCCTACTCTCTGCAGCTTCTCCGGTCATCGGCGACGAGGATTCTCAGTGCCCGACGGTATACGAGATTCTACAGGAATACGATTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAAGTACGAACTCAACAAAACGACGGGCAATTTCGCTGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAGATTACTGGTAAAATTTCTAAGGATCGACTTGCGAACTTGACAGGCGTACAGGTGAAACTGCTTTTGTTTTGGATCAATATTGTGGAAGTTACTCGTGACGGCGACGATCTAGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693071" ref_strand="+" ref_description="SGN-E693071 [LH_Ea10F21]">
      <seq>cttctgtagcccttcccttatgcatcctcctcctcctactactctctgcagcttcaccggtcgtcggcgatgaggattctcagtccccgacggcgtatgagattcttcaggaatacgactttccggtagggatacttccgaagggcgtaacaaggtacgaactcgacaaaacaacgggcaaattcgccgtttactttaacaaatcgtgcagtttcagcataagcggctataatctcaagtatatgagtaagattactggtaaaatctctaaggatcgacttgcgaacttgaaaggcgtacaggtgaaactgcttttgttttggattaatattgtcgaagttactcgtgacggcgacgatctcgatttctccgtcggtattgcttctgctgattttgcaattgataacttctatgaatcgccacagtgtggatgtggatttgattgtgtcaattctggagaaaacggcaccggtaagttcgatttgaagctgcttatcacttcgtcttgaatcgttaactgaaaattttcagaaatcgactgtaaattaagatgttttaggatgaaattaagataaaaatgtatggtccattttggaattagggtaagttcgtatttcagaatcccacggaactggaagcatatgtttttttatgctgaatatgtattttgtcatatatcttctgtggagtttcatctatgtagtagtagtgctactttttctacttgtggagtttgaaataaaaatttctgtttaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="45141" stop="46484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45418" g_stop="46191" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E693071" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45418" e_stop="46191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCG-----T--AAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGATGAAAATTAAGAT-GAAATGTATGGTCCATTTTGGAATTAGGGTAAGTTCGTATTTTCAGAATCCCACGGAACTGGAAGCATATGTTTTTTTATGCTCCTTTGGAATGAATATGTATTTTGTCATGTATCTTCTGTGGAGCTTCATCTATGCAGTAGTAGTGCTACTTTTTCTACTTGTGGAGTTTGAAATAAAAATTTCTGTTAAGCACATTGACGA</genome_strand>
        <mrna_strand>CTTCTGTAGCCCTTCCCTTATGCATCCTCCTCCTCCTACT---ACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAAATTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAGATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAACTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGCACCGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTTAACTGAAAATTTTCAGAAATCGACTGTAAATTAAGATGTTTTAGGATG-AAATTAAGATAAAAATGTATGGTCCATTTTGGAATTAGGGTAAGTTCGTA-TTTCAGAATCCCACGGAACTGGAAGCATATGTTTTTTTATG---C-------TGAATATGTATTTTGTCATATATCTTCTGTGGAGTTTCATCTATGTAGTAGTAGTGCTACTTTTTCTACTTGTGGAGTTTGAAATAAAAATTTCTGTTTACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745406" ref_strand="+" ref_description="SGN-E745406 [GI|47105672]">
      <seq>ggaaaccggtgggaataaatattatgcaatgcaagataccaacgtcgaaataattttttttctgtcatcttctgcaataattgaaacttccccaaagtcaattatacatatcgtcggcgcatcatcggagtaatcgcatctgaatatccatttgatacgaaaatcatcacaaaaaacggtagcctcaatgttttctccacgtcagatcgccgttaccctcgcttttcctctcttaatcctcttccttacaactctaccgccgttagtcaccgccgctgcagctaccggcgacgccgacgccgtaaacggtggcacttccctcactgcttacgacttactcgtaagctacggcttccccgtcggaattcttccacagggtgctattgggtacgatctcgataaggacaccggaaaattcagtgtacatcttagtgggtcttgcagtttcgcattagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcctgagtttactgaaagagatacttgcaactcatggaaaagatcaggtgacatggttgcagtgtacagaaagcctgaaatggtcattctcctccttcctcctcatcatagttgcaatacaaaaagtcgaaaactcatgtgttcatttacattatcgttatgttatctacaatttcgtctttgctctgtcatggatacaaaatattcttgaaattgctgtttataacgagattcttttccatcacgcgtattgcattaagctctctatagcttgtactcggaaatctgttaaatcagaagccaaaatgtgaaacaaaaagaattgagaagctaaggaacagatgatgacatgcactacagttctcatataaatatgcaatgcatcacctatatttatgactttttgtgaagaatttgtgcatctcatggttcacatttcattattttactttcatgctctgatcgttgtatttgacgttgtgattcgaccttttaaccccctctttgggagctcctacctttgttgtatttgacgtagtgatttgacttttctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46572" stop="51758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46871" g_stop="47651" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51458" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="1316" r_length="535" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1317" polyA_stop="1330"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E745406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1316</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46871" e_stop="47651"/>
          <exon e_start="50924" e_stop="51458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACCGGTGGGAATAAATATTATGCAATGCAAGATACCAACGTCGAAATAATTTTTTTTCTGTCATCTTCTGCAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGCGTATTGCATTAAGCTCTCTATAGCTTGTACTCGGAAATCTGTTAAATCAGAAGCCAAAATGTGAAACAAAAAGAATTGAGAAGCTAAGGAACAGATGATGACATGCACTACAGTTCTCATATAAATATGCAATGCATCACCTATATTTATGACTTTTTGTGAAGAATTTGTGCATCTCATGGTTCACATTTCATTATTTTACTTTCATGCTCTGATCGTTGTATTTGACGTTGTGATTCGACCTTTTAACCCCCTCTTTGGGAGCTCCTACCTTTGTTGTATTTGACGTAGTGATTTGACTTTTTTAA</genome_strand>
        <mrna_strand>GGAAACCGGTGGGAATAAATATTATGCAATGCAAGATACCAACGTCGAAATAATTTTTTTTCTGTCATCTTCTGCAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGCGTATTGCATTAAGCTCTCTATAGCTTGTACTCGGAAATCTGTTAAATCAGAAGCCAAAATGTGAAACAAAAAGAATTGAGAAGCTAAGGAACAGATGATGACATGCACTACAGTTCTCATATAAATATGCAATGCATCACCTATATTTATGACTTTTTGTGAAGAATTTGTGCATCTCATGGTTCACATTTCATTATTTTACTTTCATGCTCTGATCGTTGTATTTGACGTTGTGATTCGACCTTTTAACCCCCTCTTTGGGAGCTCCTACCTTTGTTGTATTTGACGTAGTGATTTGACTTTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458230" ref_strand="+" ref_description="SGN-E458230 [cPRO-5-E19]">
      <seq>atgcaatgcaagacaccaacgtcgaactaatttttttctgtcatcttctgcaataattgaatcttccccaaagtcaattatacatatcgccggcgcatcatcggagtaattgcatctgaatatccatttgatacgaatatcatcacaaaatacgacagcatcgatgtttcctccacgtcagatcgccgttaccctcgcgtttccgctcttaatcatcttcctcacaactctaccgccgttaatcaccgccgccgccgactccgccgccggaaatggtgacacttccctcactgcttacgacttgctcgtaagctacggcttccctgtcggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttctgtggctcaatattgtggaggttgttaagaatggtgacaatcttngattctctgttggaattgcttcggctagctttccatttacaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46594" stop="47817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46894" g_stop="47517" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E458230" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46894" e_stop="47517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAATGCAAGATACCAACGTCGAAATAATTTTTTTTCTGTCATCTTCTGCAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCT</genome_strand>
        <mrna_strand>ATGCAATGCAAGACACCAACGTCGAACTAA-TTTTTTTCTGTCATCTTCTGCAATAATTGAATCTTCCCCAAAGTCAATTATACATATCGCCGGCGCATCATCGGAGTAATTGCATCTGAATATCCATTTGATACGAATATCATCACAAAATACGACAGCATCGATGTTTCCTCCACGTCAGATCGCCGTTACCCTCGCGTTTCCGCTCTTAATCATCTTCCTCACAACTCTACCGCCGTTAATCACCGCCGC--C-G----C--CGACTCCGCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTGCTCGTAAGCTACGGCTTCCCTGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTCTGTGGCTCAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTNGATTCTCTGTTGGAATTGCTTCGGCTAGCTTT-CCATTTACAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484805" ref_strand="+" ref_description="SGN-E484805 [cSTE-15-G24]">
      <seq>ccaacgtcgaactaatttttttctgtcatcttctgcaataattgaatcttccccaaagtcaattatacatattgccggcgaatcatcggagtaattgcatctgaatatccatttgatacgaatattatcacaaaatacggcagcatcgatgtttcctccacgtcagatcgccgttaccctcgcgtttccgctcttaatcaccttcctcacaactctaccgccgttaatcaccgccgccgccgactccgccgccggaaatggtgacacttccctcactgcttacgacttactcgtaagctacggcttccctgttggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttctgtggctcaatattgtggaggttgttaagaatggtgacaatcttgaattctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaatcttgtctcttcggtttagctgcacacagaaggatgatggggttttgagtttgctgacagagatacttgcaactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46609" stop="47961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46909" g_stop="47651" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E484805" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46909" e_stop="47651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACGTCGAAATAATTTTTTTTCTGTCATCTTCTGCAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAG-CCTGAGTTTACTGAAAGAG</genome_strand>
        <mrna_strand>CCAACGTCGAACTAA-TTTTTTTCTGTCATCTTCTGCAATAATTGAATCTTCCCCAAAGTCAATTATACATATTGCCGGCGAATCATCGGAGTAATTGCATCTGAATATCCATTTGATACGAATATTATCACAAAATACGGCAGCATCGATGTTTCCTCCACGTCAGATCGCCGTTACCCTCGCGTTTCCGCTCTTAATCACCTTCCTCACAACTCTACCGCCGTTAATCACCGCCGC--C-G----C--CGACTCCGCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCTGTTGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTCTGTGGCTCAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAATTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAATCTTGTCTCTTCGGTTTAGCTGCACACAGAAGGATGATGGGGTTTTGAGTTTGCTGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604054" ref_strand="+" ref_description="SGN-E604054 [67245]">
      <seq>ccaacgtcgaactaatttttttctgtcatcttctgcaataattgaatcttccccaaagtcaattatacatatcgccggcgcatcatcggagtaattgcatctgaatatccatttgatacgaatatcatcacaaaatacgacagcatcgatgtttcctccacgtcagatcgccgttaccctcgcgtttccgctcttaatcatcttcctcacaactctaccaccgttaatcaccgccgccgccgactccgccgccggaaatggtgacacttccctcactgcttacgacttactcgtaagctacggcttccctgtcggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttttgtggctcaatattgtggaggttgttaagaatggtgacaatcttgaattctctgttggaattgcttcggctagctttcccatttacaatttcttggtttgtccacaatgtggatgtggattgacttgcatagcaatggacatattcttaaagattcgaaaacagtaatcttgtctcttcggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46609" stop="47907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46909" g_stop="47607" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E604054" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46909" e_stop="47607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACGTCGAAATAATTTTTTTTCTGTCATCTTCTGCAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTC-TAAAGATTCG-AAACAGTAACCTTGTCTCTTCTGTTT</genome_strand>
        <mrna_strand>CCAACGTCGAACTAA-TTTTTTTCTGTCATCTTCTGCAATAATTGAATCTTCCCCAAAGTCAATTATACATATCGCCGGCGCATCATCGGAGTAATTGCATCTGAATATCCATTTGATACGAATATCATCACAAAATACGACAGCATCGATGTTTCCTCCACGTCAGATCGCCGTTACCCTCGCGTTTCCGCTCTTAATCATCTTCCTCACAACTCTACCACCGTTAATCACCGCCGC--C-G----C--CGACTCCGCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCTGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTTTGTGGCTCAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAATTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCATTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGACTTGC-ATAGCAATGGACATATTCTTAAAGATTCGAAAACAGTAATCTTGTCTCTTCGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700621" ref_strand="+" ref_description="SGN-E700621 [FA13CF09]">
      <seq>cactaattgaaacttccccaaagtcaattatacatatcgtcggcgcatcatcggagtaatcgcatctgaatatccatttgatacgaaaatcatcacaaaaaacggtagcctcaatgttttctccacgtcagatcgccgttaccctcgcttttcctctcttaatcctcttccttacaactctaccgccgttagtcaccgccgctgcagctaccggcgacgccgacgccgtaaacggtggcacttccctcactgcttacgacttactcgtaagctacggcttccccgtcggaattcttccacagggtgctattgggtacgatctcgataaggacaccggaaaattcagtgtacatcttaatgggtcttgcagtttcgcattagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcctgagtttactgaaagagatacttgcaactcatggaaaagatcaagtgacatggttgcagtgtacagaaagcctgaaatggtcattctcctccttcctcctcatcatagttgcaatacaaaaagtcgaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46645" stop="51339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46945" g_stop="47651" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51039" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="823" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E700621" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46945" e_stop="47651"/>
          <exon e_start="50924" e_stop="51039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTC</genome_strand>
        <mrna_strand>CACTAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAATGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAAGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731145" ref_strand="+" ref_description="SGN-E731145 [LA26BB03]">
      <seq>caataattgaaacttccccaaagtcaattatacatatcgtcggcgcatcatcggagtaatcgcatctgaatatccatttgatacgaaaatcatcacaaaaaacggtagcctcaatgttttctccacgtcagatcgccgttaccctcgcttttcctctcttaatcctcttccttacaactctaccgccgttagtcaccgccgctgcagctaccggcgacgccgacgccgtaaacggtggcacttccctcactgcttacgacttactcgtaagctacggcttccccgtcggaattcttccacagggtgctattgggtacgatctcgataaggacaccggaaaattcagtgtacatcttaatgggtcttgcagtttcgcattagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcctgagttttactgaagagatacttgcaactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46645" stop="47961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46945" g_stop="47651" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E731145" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46945" e_stop="47651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAG-TTTACTGAAAGAG</genome_strand>
        <mrna_strand>CAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAATGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTTACTG-AAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402434" ref_strand="+" ref_description="SGN-E402434 [PPC-7-P23]">
      <seq>gagtaattgcatctgaatatccatttgatacgaatattatcacaaaatacggcagcatcgatgtttcctccacgtcagatcgccgttaccctcgcgtttccgctcttaatcaccttcctcacaactctaccgccgttaatcaccgccgccgccgactccgccgccggaaatggtgacacttccctcactgcttacgacttactcgtaagctacggcttccctgttggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttctgtggctcaatattgtggaggttgttaagaatggtgacaatcttgaattctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaatcttgtctcttcggtttagctgcacacagaaggatgatggggtttgagtttgctgacagagatacttgcaactcatggaaaagatcaggtgacattgttgcagtgtacagaaatcccgaaatggtcattctcctcccttcctcctcatcatagttacaatacaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46698" stop="51327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46998" g_stop="47651" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51028" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="751" r_length="106" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E402434" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46998" e_stop="47651"/>
          <exon e_start="50924" e_stop="51028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCT-CCTTCCTCCTCATCATAGTTGCAATACAAAAA</genome_strand>
        <mrna_strand>GAGTAATTGCATCTGAATATCCATTTGATACGAATATTATCACAAAATACGGCAGCATCGATGTTTCCTCCACGTCAGATCGCCGTTACCCTCGCGTTTCCGCTCTTAATCACCTTCCTCACAACTCTACCGCCGTTAATCACCGCCGC--C-G----C--CGACTCCGCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCTGTTGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTCTGTGGCTCAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAATTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAATCTTGTCTCTTCGGTTTAGCTGCACACAGAAGGATGATGGGGTTTGAGTTTGCTGACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATTGTTGCAGTGTACAGAAATCCCGAAATGGTCATTCTCCTCCCTTCCTCCTCATCATAGTTACAATACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401345" ref_strand="+" ref_description="SGN-E401345 [PPC-3-L2]">
      <seq>gagtaattgcatctgaatatccatttgatacgaatattatcacaaaatacggcagcatcgatgtttcctccacgtcagatcgccgttaccctcgcgtttccgctcttaatcaccttcctcacaactctaccgccgttaatcaccgccgccgccgactccgccgccggaaatggtgacacttccctcactgcttacgacttactcgtaagctacggcttccctgttggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttctgtggctcaatattgtggaggttgttaagaatggtgacaatcttgaattctctgttggaattgcttcggctagctttcccacttacaatttcttgggttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46698" stop="47874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46998" g_stop="47574" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E401345" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46998" e_stop="47574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAA</genome_strand>
        <mrna_strand>GAGTAATTGCATCTGAATATCCATTTGATACGAATATTATCACAAAATACGGCAGCATCGATGTTTCCTCCACGTCAGATCGCCGTTACCCTCGCGTTTCCGCTCTTAATCACCTTCCTCACAACTCTACCGCCGTTAATCACCGCCGC--C-G----C--CGACTCCGCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCTGTTGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTCTGTGGCTCAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAATTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGGTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728941" ref_strand="+" ref_description="SGN-E728941 [LA19BH01]">
      <seq>catctgaatatccatttgatacgaaaatcatcacaaaaaacggtagcctcaatgttttcctccacgtcagatcgccgttaccctcgcttttcctctcttaatcctcttccttacaactctaccgccgttagtcaccgccgctgcagctaccggcgacgccgacgccgtaaacggtggcacttccctcactgcttacgacttactcgtaagctacggcttccccgtcggaattcttccacagggtgctattgggtacgatctcgataaggacaccggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46707" stop="47585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47007" g_stop="47285" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E728941" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47007" e_stop="47285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTT-CTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAA</genome_strand>
        <mrna_strand>CATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712230" ref_strand="+" ref_description="SGN-E712230 [FB04BB02]">
      <seq>ccgccgttagtcaccgccgctgcagctaccggcgacgccgacgccgtaaacggtggcacttccctcactgcttacgacttactcgtaagctacggcttccccgtcggaattcttccacagggtgctattgggtacgatctcgataaggacaccggaaaattcagtgtacatcttaatgggtcttgcagtttcgcattagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcctgagtttactgaaagagatacttgcaactcatggaaaagatcaggtgacatggttgcagtgtacagaaagcctgaaatggtcattctcctccttcctcctcatcatagttgcaatacaaaaagtcgaaaactcatgtgttcatttacattatcgttatgttatctacaatttcgtctttgctctgtcatggatacaaaatattcttgaaattgctgtttataacgagattcttttccatcanaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46827" stop="51447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47127" g_stop="47651" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51150" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="752" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="768"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E712230" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47127" e_stop="47651"/>
          <exon e_start="50924" e_stop="51150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGC</genome_strand>
        <mrna_strand>CCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAATGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421373" ref_strand="+" ref_description="SGN-E421373 [STM-32-D12]">
      <seq>tcccttttttcagaagattgtgtattcatgactgagtcaagacgcgatagtagaaaacataaagacaatgtaaatgaacacatgagttttcgactttcagttttgtagtaactatgatgaggaggagggaggagaatgaccatttcgggctttctgtacacttcaacaatgtcacctgatcttttccatgagttgcaagtatctctttcagcaaactcaaaccccaccatccttctgtgtgcagctaaaccgaagagacaagattactgtttcgaatctttagaatatgtccactgctattgcaattcaatccacatccacattgtggacaaaccaagaaattgtaagtgggaaagctagccgaagcaattccaacagagaattcaagattgtcaccattcttaataacctccacaatattgagccacagaaacagaattttcacactaaccccatataggcttgacagcctatttttagctatgtacccaccgaatgtcgatttatacctaagctgataggacccttctagtgcgaaactgcaagacccattaaggtggacactgaattttccggtgttcttatcgagatcgtacccaatagcaccctgtggaagaattccgacagggaagccgtagcttacgagcaagtcgtaagcagtggagggaagtgtcaccattttccggcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="51416" stop="46866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51122" g_stop="50922" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.836"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50921" i_stop="47948" i_length="2974">
            <donor d_prob="0.552" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47947" g_stop="47942" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="211" r_length="7" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47941" i_stop="47643" i_length="299">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.542" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47642" g_stop="47163" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="690" r_length="479" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E421373" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51122" e_stop="50922"/>
          <exon e_start="47947" e_stop="47942"/>
          <exon e_start="47642" e_stop="47163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTTCAAGAATATTTTGTATCCATGACAGAGCAAAGACGAAATTGTAGATAACATAACGATAATGTAAATGAACACATGAGTTTTCGACTTT---TTGTATTGCAACTATGATGAGGAGGAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCTGCAAGCACTCAACAAATAGAGTCATGTATTAGATATCTTCCTTCTAATTTTCGAGGCAATGCAGAAGTCAAATACACTATAAAGTGCCATAGGTTGCTACAGAAGAGAAAGAGAAAGGGCAGAGGAAATAAGCAGATCTTGTGGCTGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTTATAGGTTTATATTTCTTACTTATTGCAATTTTAGTGAATTATTACACACGAATTTATTCGCTGCCTCGAAAGGATTTCAGCCTCAGTTTACTGTTTGATCAAACAGAGCCTCTCAGCATATACAAACTCTTATTTTCCTATTCATACATATCGCTTCAATGGTTTTTGTTGTCCTACATGGAATTCATATGTGTATGACACCATAACTCAACCCCAGAATGTCTGCAACAATCCATTTTCTCAACCAATGTGGGACAATTACCACACCTGCACCAATGCATGTACAATATAACACAAGGAACCAACATCGGGAAACCGAGAACAAGAATAGATCAAGCTCTGGTATTATGTGAAGAAAGTGGGTCTTGGGTCTAATTTACACCCAGTGTAAGCTCATGAGATGAGGATCTCTCAAGATTATATAAAGAGAGAACAACCCATTTATTCAACCAATGTAGGATAGTTAATAGTGTCAACCATTAGCAAGCTTGGGTACATACAATTCCAGCAACCCCCCCCCTCACTTGATGGCCATGATATTCTTATTAACATTTCATGCAAAAGATTAGCCAACTACATTAACCTCAACTGCTTGATGGCACTAGTAAACTAATAGCAAGCTTCTTATTCTCTTGTTTTCAAACAAAGAACCTTCAGGAAGAAATAGAGATCCCTGTACTCATGCTTTCAGCAAAAAATCATGGTCCAGACTCTGGTGAGTTGGTAGTTACCAGATTTGTAATGGCAGCATCTCGTACAGTTGTGAATTGTGATTTTGAAAAATGGCACCACAGTAGTATGTACGAGTCATATTGTTGAAGCATCAGTTACCGTCGTGGTGAACCAACAGCAGAAATGTGTTCTAACTAGGATGTAAAAACAGGGAAAGCTCTTGCAAACTTCAACTATTAACTAGAAGCACCAAAGAGGGGAGAACACAAAATTGAAAAGCAGTCTATCGAGAGTCTAGTGCTGATCAATGCTTTATTGCATGTCTCAGAATAAAGATCCATTTGGCCCTCGGGAAAGATGCGTAAAGTATGGATGCTTAAGCTTGTATAACTCTTCCCCTTCCATGACAAAGAGAGAGGCTAGAGGGTGGGGCGTAACGAGCTCAATAGAACTTTCTACGCCTAACAACGGAAAAAGAAGCTTTTTTATTGTTTCACTCTCTAAGAAGAATGAAAAAAAGAAAAGCTAACATAAATTGAGGGGAGGGTTCCATTGCTTCAAACTTTCATATTAACGAAGAACGAAAATTAACCTAGAAACTCTTATATGCATGTACCATATGGCAAGTTCTCGGTATAAGATTTAGGACTACATTTATTCAGTGTTTGGCTGCATGCATTAGCTGATACAATATAAATTTTGTACATAATTGACTTAATACATAGTCAGCCCCTTACACTTGCCAAGATACTTTATTTAGATACTCAAACTAAGTCTCTTCCAATTGAACACCTCAACTCCTTATAAAGAGTTCCCATTAGACACTTTCGGTTTAAATTTTGAACTTAATTTGACATTCTCTATCGTTTATTAGGTAGATACATTAACCACATAAAATATGTCATTTACTTTAATTATATACACTTGCCTCAAAAAGTCATAAACCTCAGGCGTTTCCTACTTGAGGTTGATGCATATAATTAAAGGAAATAATATATATTATGTGGTTAAGTTAACTACCTAAATAGACAAATGAAAACATGCGTTAAGTTTTTCCGAAATTTAAAAGGAAGTGTCTAATTGGGACATCTTATTTGGAGTTGGGCTGTTCAATTGGAATATGACTCCGTTCGAGTGTCTAAATGGAATATTCTGACAAGTATAAGGGGTTATCTATATATTAAGCCTAATATTATTCCGTACCATAAGGGATGTGGGATTATAATCCGAAGATAACTTGCTCCAAACCAATCGACCCTTGGGTGTTTGAGCAATATACCTCAGGGCTTTGATCTTACGGTGAGAGAGCATCCTATCTAAAATCCTTGAATCATTGAATAAGGGGATATAGACGCAGCCCATGCTTTATTTGATCAACTAAGATAAGGTCTAGGACCATATGTTCTTTTCCAAATAATAGCACATGATATGTCTGAGTTATTATGCACAAGTTTGAACCCTCTCAAAAGCCTTAAGCCTTGTAATTAAGTTGAGAGAAGTAGAAAGGTGGCTTTACTGATAATATGGACTCACAAACAAAATAATTCAATAGAAAGAACTCTAGCAAATCTGGCCCAATGTTCTAACATAAAAATTCTTGTAGCATCCTCTTGATAAAAAAATCACCACAAAGGGAAGACTACTTTCTCTTGACCCGTTAAATTTTTTAAACATGGTTAAATACATATACATGGTCTCTTCTTGTAGTTTCACATGTAAGGTCAATGTAGAGATGATTTCACTTCGCTTTTAGTCCTTTTCAAAGTTGTCATTCACTTCTCCTTACCCCGTCCCCTTTTTAACTGTTTGTTTCTCTCCACCAGTTAAAATGTAACCTACTTCCATACTAAAATATCTTAAACATGAACGAGAATAATACATCAGAATACAATTTGACCATGTTTTCTCTAAAAAATCACATAATTGTAACTCTCTTATTATTCAAAATGTGTCTTGTTAAACAAAGATGGGCATGTATTGTGGATTTTCTGTCATCAAAGATAGGTCTTAGATCAAGCTCTTCTTCTGGTTCTTTTTCCTTATCTTTATTCTATTATGTTGAATTCTTTCATTTAG-TTTCAGGCCGCGAAATTTAAGAGCGATAACTAATAGACTGCGAACTTATCAGATGTTTAATACTTTTCTTGATAAGTGACAGTTTTATTTATTTGATTAAGATGCAAAGCTTCAAGAATATTCTCCAACTGTTAACAATGTCAACCTAAACCATACACATACTCATGAAATTTGTAATGCTTCACCACAAATTGAAGAATTAAACATCTGATAAATTCATAAATTGAATCAAGTATAAGTCAGTGAGCAACCAAGTAGTAGCATATATTCAGAAATATTCAAAAACTGGAACTAACCTCTTTCAGTAAACTCAGGCTCCATCATCCTTCTGTGTGCAGCTAAACAGAAGAGACAAGGTTACTGTTTCGAATCTTTAGAATATGTCCATTGCTATTGCAATTCAATCCACATCCACATTGTGGACAAACCAAGAAATTGTAAGTGGGAAAGCTAGCCGAAGCAATTCCAACAGAGAACTCAAGATTGTCACCATTCTTAACAACCTCCACAATATTCAGCCACAGAAACAGAATTTTTACACTAACCCCATGTAGGCTTGACAGCCTATTTTTAGCTATGTACCCACCGAATCTCGATTGATACCTAAGCTGATAAGACCCTTCTAATGCGAAACTGCAAGACCCACTAAGATGTACACTGAATTTTCCGGTGTCCTTATCGAGATCGTACCCAATAGCACCCTGTGGAAGAATTCCGACGGGGAAGCCGTAGCTTACGAGTAAGTCGTAAGCAGT-GAGGGAAGTGCCACCGTTTACGGCGTCGGC</genome_strand>
        <mrna_strand>TCCCTTTTTTCAGAAGATTGTGTATTCATGACTGAGTCAAGACGCGATAGTAGAAAACATAAAGACAATGTAAATGAACACATGAGTTTTCGACTTTCAGTTTTGTAGTAACTATGATGAGGAGGAGGGAGGAGAATGACCATTTCGGGCTTTCTGTACACTTCAACAATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCAG...........................................................................................................................................................................................................................................................................................................CAAACTCAAACCCCACCATCCTTCTGTGTGCAGCTAAACCGAAGAGACAAGATTACTGTTTCGAATCTTTAGAATATGTCCACTGCTATTGCAATTCAATCCACATCCACATTGTGGACAAACCAAGAAATTGTAAGTGGGAAAGCTAGCCGAAGCAATTCCAACAGAGAATTCAAGATTGTCACCATTCTTAATAACCTCCACAATATTGAGCCACAGAAACAGAATTTTCACACTAACCCCATATAGGCTTGACAGCCTATTTTTAGCTATGTACCCACCGAATGTCGATTTATACCTAAGCTGATAGGACCCTTCTAGTGCGAAACTGCAAGACCCATTAAGGTGGACACTGAATTTTCCGGTGTTCTTATCGAGATCGTACCCAATAGCACCCTGTGGAAGAATTCCGACAGGGAAGCCGTAGCTTACGAGCAAGTCGTAAGCAGTGGAGGGAAGTGTCACCATTTTC--CGGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407749" ref_strand="+" ref_description="SGN-E407749 [PPI-8-K20]">
      <seq>gccgccggaaatggtgacacttccctcactgcttacgacttgctcgtaagctacggcttccctgtcggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttctgtggctcaatattgtggaggttattaagaatggtgacaatcttgaattctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcagtggacatattctaaagattcgaaacagtaatcttgtctcttcggtttagctgcacacagaaggatggtggggtttgagtttgctgaaagagatacttgcaactcatggaaaagatcaggtgacattgttgaagtgtacagaaagcccgaaatggtcattctcctncctnctcctcatcatagttactacaaaactgaaagtcgaaaactcatgtgttcatttacattgnctttatgttttctactatcgcgtcttgactctgtcatgaatacacaatcttcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46866" stop="51416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47166" g_stop="47651" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51104" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="670" r_length="184" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E407749" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47166" e_stop="47651"/>
          <exon e_start="50924" e_stop="51104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAG-T--TGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAA</genome_strand>
        <mrna_strand>GCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTGCTCGTAAGCTACGGCTTCCCTGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTCTGTGGCTCAATATTGTGGAGGTTATTAAGAATGGTGACAATCTTGAATTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAGTGGACATATTCTAAAGATTCGAAACAGTAATCTTGTCTCTTCGGTTTAGCTGCACACAGAAGGATGGTGGGGTTTGAGTTTGCTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATTGTTGAAGTGTACAGAAAGCCCGAAATGGTCATTCTCCTNCCTNCTCCTCATCATAGTTACTACAAAACTGAAAGTCGAAAACTCATGTGTTCATTTACATTGNCTTTATGTTTTCTACTATCGCGTCTTGACTCTGTCATGAATACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421372" ref_strand="+" ref_description="SGN-E421372 [STM-32-D12]">
      <seq>gccgccggaaatggtgacacttccctcactgcttacgacttgctcgtaagctacggcttccctgtcggaattcttccacagggtgctattgggtacgatctcgataagaacaccggaaaattcagtgtccaccttaatgggtcttgcagtttcgcactagaagggtcctatcagcttaggtataaatcgacattcggtgggtacatagctaaaaataggctgtcaagcctatatggggttagtgtgaaaattctgtttctgtggctcaatattgtggaggttattaagaatggtgacaatcttgaattctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcagtggacatattctaaagattcgaaacagtaatcttgtctcttcggtttagctgcacacagaaggatggtggggtttgagtttgctgaaagagatacttgcaactcatggaaaagatcaggtgacattgttgaagtgtacagaaagcccgaaatggtcattctcctccctnctnctcatcatagttactacaaaactgaaagtcgaaaactcatgtgttcatttacattggctttatgttttctactatcgcgtcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46866" stop="51384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47166" g_stop="47651" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51087" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="653" r_length="167" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E421372" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47166" e_stop="47651"/>
          <exon e_start="50924" e_stop="51087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAG-T--TGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGC</genome_strand>
        <mrna_strand>GCCGCCGGAAATGGTGACACTTCCCTCACTGCTTACGACTTGCTCGTAAGCTACGGCTTCCCTGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGAACACCGGAAAATTCAGTGTCCACCTTAATGGGTCTTGCAGTTTCGCACTAGAAGGGTCCTATCAGCTTAGGTATAAATCGACATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTATATGGGGTTAGTGTGAAAATTCTGTTTCTGTGGCTCAATATTGTGGAGGTTATTAAGAATGGTGACAATCTTGAATTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAGTGGACATATTCTAAAGATTCGAAACAGTAATCTTGTCTCTTCGGTTTAGCTGCACACAGAAGGATGGTGGGGTTTGAGTTTGCTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATTGTTGAAGTGTACAGAAAGCCCGAAATGGTCATTCTCCTCCCTNCTNCTCATCATAGTTACTACAAAACTGAAAGTCGAAAACTCATGTGTTCATTTACATTGGCTTTATGTTTTCTACTATCGCGTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308953" ref_strand="+" ref_description="SGN-E308953 [cLEY-23-M23]">
      <seq>tcgataaggacaccggaaaattcagtgtacatcttagtgggtcttgcagtttcgcattagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcctgagtttactgaaagagatacttgcaactcatggaaaagatcaggtgacatggttgcagtgtacagaaagcctgaaatggtcattctcctccttcctcctcatcatagttgcaatacaaaaagtcgaaaactcatgtgttcatttacattatcgttatgttatctacaatttcgtctttgctctgtcatggatacaaaatattcttgaaattgctgtttataacgagattcttttccatcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="46966" stop="51447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47266" g_stop="47651" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50924" g_stop="51150" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="613" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E308953" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47266" e_stop="47651"/>
          <exon e_start="50924" e_stop="51150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAGGTTAGTTCCAGTTTTTGAATATTTCTGAATATATGCTACTACTTGGTTGCTCACTGACTTATACTTGATTCAATTTATGAATTTATCAGATGTTTAATTCTTCAATTTGTGGTGAAGCATTACAAATTTCATGAGTATGTGTATGGTTTAGGTTGACATTGTTAACAGTTGGAGAATATTCTTGAAGCTTTGCATCTTAATCAAATAAATAAAACTGTCACTTATCAAGAAAAGTATTAAACATCTGATAAGTTCGCAGTCTATTAGTTATCGCTCTTAAATTTCGCGGCCTGAAACTAAATGAAAGAATTCAACATAATAGAATAAAGATAAGGAAAAAGAACCAGAAGAAGAGCTTGATCTAAGACCTATCTTTGATGACAGAAAATCCACAATACATGCCCATCTTTGTTTAACAAGACACATTTTGAATAATAAGAGAGTTACAATTATGTGATTTTTTAGAGAAAACATGGTCAAATTGTATTCTGATGTATTATTCTCGTTCATGTTTAAGATATTTTAGTATGGAAGTAGGTTACATTTTAACTGGTGGAGAGAAACAAACAGTTAAAAAGGGGACGGGGTAAGGAGAAGTGAATGACAACTTTGAAAAGGACTAAAAGCGAAGTGAAATCATCTCTACATTGACCTTACATGTGAAACTACAAGAAGAGACCATGTATATGTATTTAACCATGTTTAAAAAATTTAACGGGTCAAGAGAAAGTAGTCTTCCCTTTGTGGTGATTTTTTTATCAAGAGGATGCTACAAGAATTTTTATGTTAGAACATTGGGCCAGATTTGCTAGAGTTCTTTCTATTGAATTATTTTGTTTGTGAGTCCATATTATCAGTAAAGCCACCTTTCTACTTCTCTCAACTTAATTACAAGGCTTAAGGCTTTTGAGAGGGTTCAAACTTGTGCATAATAACTCAGACATATCATGTGCTATTATTTGGAAAAGAACATATGGTCCTAGACCTTATCTTAGTTGATCAAATAAAGCATGGGCTGCGTCTATATCCCCTTATTCAATGATTCAAGGATTTTAGATAGGATGCTCTCTCACCGTAAGATCAAAGCCCTGAGGTATATTGCTCAAACACCCAAGGGTCGATTGGTTTGGAGCAAGTTATCTTCGGATTATAATCCCACATCCCTTATGGTACGGAATAATATTAGGCTTAATATATAGATAACCCCTTATACTTGTCAGAATATTCCATTTAGACACTCGAACGGAGTCATATTCCAATTGAACAGCCCAACTCCAAATAAGATGTCCCAATTAGACACTTCCTTTTAAATTTCGGAAAAACTTAACGCATGTTTTCATTTGTCTATTTAGGTAGTTAACTTAACCACATAATATATATTATTTCCTTTAATTATATGCATCAACCTCAAGTAGGAAACGCCTGAGGTTTATGACTTTTTGAGGCAAGTGTATATAATTAAAGTAAATGACATATTTTATGTGGTTAATGTATCTACCTAATAAACGATAGAGAATGTCAAATTAAGTTCAAAATTTAAACCGAAAGTGTCTAATGGGAACTCTTTATAAGGAGTTGAGGTGTTCAATTGGAAGAGACTTAGTTTGAGTATCTAAATAAAGTATCTTGGCAAGTGTAAGGGGCTGACTATGTATTAAGTCAATTATGTACAAAATTTATATTGTATCAGCTAATGCATGCAGCCAAACACTGAATAAATGTAGTCCTAAATCTTATACCGAGAACTTGCCATATGGTACATGCATATAAGAGTTTCTAGGTTAATTTTCGTTCTTCGTTAATATGAAAGTTTGAAGCAATGGAACCCTCCCCTCAATTTATGTTAGCTTTTCTTTTTTTCATTCTTCTTAGAGAGTGAAACAATAAAAAAGCTTCTTTTTCCGTTGTTAGGCGTAGAAAGTTCTATTGAGCTCGTTACGCCCCACCCTCTAGCCTCTCTCTTTGTCATGGAAGGGGAAGAGTTATACAAGCTTAAGCATCCATACTTTACGCATCTTTCCCGAGGGCCAAATGGATCTTTATTCTGAGACATGCAATAAAGCATTGATCAGCACTAGACTCTCGATAGACTGCTTTTCAATTTTGTGTTCTCCCCTCTTTGGTGCTTCTAGTTAATAGTTGAAGTTTGCAAGAGCTTTCCCTGTTTTTACATCCTAGTTAGAACACATTTCTGCTGTTGGTTCACCACGACGGTAACTGATGCTTCAACAATATGACTCGTACATACTACTGTGGTGCCATTTTTCAAAATCACAATTCACAACTGTACGAGATGCTGCCATTACAAATCTGGTAACTACCAACTCACCAGAGTCTGGACCATGATTTTTTGCTGAAAGCATGAGTACAGGGATCTCTATTTCTTCCTGAAGGTTCTTTGTTTGAAAACAAGAGAATAAGAAGCTTGCTATTAGTTTACTAGTGCCATCAAGCAGTTGAGGTTAATGTAGTTGGCTAATCTTTTGCATGAAATGTTAATAAGAATATCATGGCCATCAAGTGAGGGGGGGGGTTGCTGGAATTGTATGTACCCAAGCTTGCTAATGGTTGACACTATTAACTATCCTACATTGGTTGAATAAATGGGTTGTTCTCTCTTTATATAATCTTGAGAGATCCTCATCTCATGAGCTTACACTGGGTGTAAATTAGACCCAAGACCCACTTTCTTCACATAATACCAGAGCTTGATCTATTCTTGTTCTCGGTTTCCCGATGTTGGTTCCTTGTGTTATATTGTACATGCATTGGTGCAGGTGTGGTAATTGTCCCACATTGGTTGAGAAAATGGATTGTTGCAGACATTCTGGGGTTGAGTTATGGTGTCATACACATATGAATTCCATGTAGGACAACAAAAACCATTGAAGCGATATGTATGAATAGGAAAATAAGAGTTTGTATATGCTGAGAGGCTCTGTTTGATCAAACAGTAAACTGAGGCTGAAATCCTTTCGAGGCAGCGAATAAATTCGTGTGTAATAATTCACTAAAATTGCAATAAGTAAGAAATATAAACCTATAACTAAATAAATAATATTTGGTCCAATACTAAAAACCTTTGATGCACTTGTATAGTACATTGTGTGAGAGACAGACCTGCAGCCACAAGATCTGCTTATTTCCTCTGCCCTTTCTCTTTCTCTTCTGTAGCAACCTATGGCACTTTATAGTGTATTTGACTTCTGCATTGCCTCGAAAATTAGAAGGAAGATATCTAATACATGACTCTATTTGTTGAGTGCTTGCAGATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGC</genome_strand>
        <mrna_strand>TCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290047" ref_strand="+" ref_description="SGN-E290047 [cLET-5-A10]">
      <seq>attagaagggtcttatcagcttaggtatcaatcgagattcggtgggtacatagctaaaaataggctgtcaagcctacatggggttagtgtaaaaattctgtttctgtggctgaatattgtggaggttgttaagaatggtgacaatcttgagttctctgttggaattgcttcggctagctttcccacttacaatttcttggtttgtccacaatgtggatgtggattgaattgcaatagcaatggacatattctaaagattcgaaacagtaaccttgtctcttctgtttagctgcacacagaaggatgatggagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="47021" stop="47935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47321" g_stop="47635" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E290047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47321" e_stop="47635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCT</genome_strand>
        <mrna_strand>ATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318410" ref_strand="-" ref_description="SGN-E318410 [cTOB-10-E21]">
      <seq>gaaggaggagaatgcccatttcaggctttctgtacagtgcaaccatgtcgcctgatctttcccatgagttgcaagtatccgcaagcactcaacaaatagagtcatgtactagatatcttccttataattttagaggcaatgcagaagtcaaacccactataaagtgccataggttgctacataagagaaagagaaagggcagagcaaataagcagatcttgtgggcgcaggtctgtctctcacacaatgtactatacaagtgcatcaaaggtttttagtattggaccaaatattatttatttagtaataggtttatatttcttacttcttgcaattttagtgaattattacaaaaaaaaaaaaaaaaaactcgagactagtttctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="51301" stop="50344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51001" g_stop="50650" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="370"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E318410" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318410" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51001" e_stop="50650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCTGCAAGCACTCAACAAATAGAGTCATGTATTAGATATCTTCCTTCTAATTTTCGAGGCAATGCAGAAGTCAAATACACTATAAAGTGCCATAGGTTGCTACAGAAGAGAAAGAGAAAGGGCAGAGGAAATAAGCAGATCTTGTGGCTGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTTATAGGTTTATATTTCTTACTTATTGCAATTTTAGTGAATTATTACA</genome_strand>
        <mrna_strand>GAAGGAGGAGAATGCCCATTTCAGGCTTTCTGTACAGTGCAACCATGTCGCCTGATCTTTCCCATGAGTTGCAAGTATCCGCAAGCACTCAACAAATAGAGTCATGTACTAGATATCTTCCTTATAATTTTAGAGGCAATGCAGAAGTCAAACCCACTATAAAGTGCCATAGGTTGCTACATAAGAGAAAGAGAAAGGGCAGAGCAAATAAGCAGATCTTGTGGGCGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTAATAGGTTTATATTTCTTACTTCTTGCAATTTTAGTGAATTATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63192" stop="53370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62892" g_stop="62560" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62559" i_stop="53772" i_length="8788">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53771" g_stop="53658" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="450" r_length="114" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62892" e_stop="62560"/>
          <exon e_start="53771" e_stop="53658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAGCAAGAGAGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAAGGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAGGTTATTAATTTACTATTATATACAATTTTCCCTCGTATATATTATACACTAAATTAAAAAAATAAATTGAATTCTCTGGAAAAGTAACACATCACAAGTTTCGAGTGGACATAAACAGAATTGGGCACATTAGAATATTTTGTGAATCGCAAGTAAGATCAAATTAAAGCTATCAACTAATCAATCTCATTCACATCTCTCTCAATAATTGGGAGATGGTATCAACTGGAAAAATAAATATTATTATTCGAAAGAATTTTAATAGCTAAATTGATTAAATTTTGAATTATAATCAATTTAATTTGTTGATGTTTGAATTTTTGTCTAGTTGAAATTAAAGTATTATCGACTCGATTTTCTAGGACGAGTCATAAAATAATTTTATAAATATTTTGTTTGCTGAACTAATAAAAGGAAAACATTATGAATAGTACGATCTAATAAAATTGATAGTCACTTAATAGAAAACTCAATATAGACTATCGATTCAAAAATCATAAATTAAAATTTGTGGCTCCTGCATAGTGATATTTTCTCCGTTTCAAAAAGAATGTTTTTATTTTATTTTTAATTTGTTTAAAAAAGAATGACCCTTTTTCGTTTTTGACAACACTTTAACTTTAATTTTCCACGTGACATATTTAAAACCACAAAATCAAGATCATTTTGATACATTTGACATAATTTTATTTTCGAATCATAAAATTAAAAAAAAAAATTCAGACTTTATTCCAAATCGAATCAGGTTATCATTTTTTAAATGGAGGGAATAACTAATAAGTGAATGGTAAACTAAAGATAAGTTCAAAAGAAAAATAAATTACTTTAAGAAATAAAACCTATCTTTTATCAACACGTATAATTAATCATTCTTGTGATGTGATCATTACTAAATTAAAAGTTTATGGATAAGATCATTAGACCAAGTCAAGTGTCAAATTAATGTGGGATTATCATCAAATAAGACACAAGTGGCTTAAATTATTATTTTTTACCCTTTTCGCGGTTAAAGTTTATATCAAATTTGTAAATAAGTTAAATACGATTTATTAATCAGTTCAATTAATTTATAAGCTTAATCAAACAATTTGAATGGTGTATTTGACACCGCTATGTTACATAATAAGATTTTTTTTTTCTTTTTTTGATTCCTTGTGGTATTTTGGTTTTGCTCCACAAATTAGGTATAAGAATAGCATACACAAAAAAATATGTATATTCTGTGAGCCTGAAATTAATATATGATAGGGAGAGCAAATTGTTTTTTTTTCCAGAAAAAATAATGTTGTCTTTTGGTAGTGTAAAAGAGGCAAATTAAAGCTAGGATTTTTATTTTGTGTGTGTGGAATTAATATTGATCACTGAATAATTAATGTAATAATAGGAATCTGCCTTTGCCACAGCTTTTTGGCTCCACAAAAATATTTGTGTGTTCAAAAATAGGGCTTTAATTGTGTTGATAACAACTCCCACTATTTATTCTTATTCTATAACAAGATACTGAGAGGGAACATTAAAAAAAACATAATATAAAAATATATGGGCTTATATTCAAATAAATATGATTTGGACAAAAATAAAAATCATATTTGTTAAGTGCTAACTCTGTCAAGTATGATTTGGACAAATATGAAATTACATAGGGTTATATTCAAAAAATTACGTGATTAAGTAAATTTGTACTATTTAATTATTTATCATAAATATAGTTTGTTATAATTAACATATGCAACTAATATTATACACTAATTACATGGGACGACTTCGAGTTTATATAATAGTCACGTTTGTATATGTATAATTCGCCAAAATATATAATTATTTAACTGACATACATATATAATTTACCTCTCTCCCACTCTCTGTCCTCTCCCAATCTCGCTCTCCTCTCTCCTCTCTCTCAATCTCGCTCTTCTCTCTCTCCCAATCTTGCATGTCATATATACAAATGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAAAATGCATATGTATAATATAAAATTATCTAACCGATATACATATACAATTCATCTCTCTCCACTCTCTCGCTCGCCTATCTCCTCCTCTCCCAGTCTTTCTCGCTCGCATCTCTCAACCCTCTTCCGATCTCGCGTGACATATGTACAAATGCATATGTATAATATACAATTATCTAACCGATATACATATACAATTCATATCTCTCCACTCTCTCGCTCGCCTATCTCCTCCTCTCCCAGTCTTTCTCGCTCGCATCTCTCCTCCCTCTTACTATCTCGCTTGACATATGTACAAATACATATGTATAATATACAATTTTATATATATATATGACGTGTAGCTACAAATTATGGTTATCAAATCATAATTAGCTTATTTTTAATTGCTTCTATATGAAAGTTCCTTTTTATTTAATATTCAATATCTATATTAGTATTTAACTAATTTAAATTTTTATTGCTTAGGATTCCATTAAAGGGAAAAACTATTTTTAAATTTTAAACACAAAGCTTCTAATTAAAAAAATCAGTCTCATCCACCTCACCATATTCTCGGGTGATTCTTTTTTTTTGGTTGTTGCAAGTTGTTGAAAGTGCATGTAAATAACTGGATACTTATGGATCATATGCTTGCCGTCCTTTCTTTTTTGCCTTCACTTAAATATTAGTTTCGTTTCATATTTGTTAATTATTTTACTAAAAATAATTATTCCATATAAATTGGTACTTTATTAAATTAAAAAGTATTTATTAATTATTTTTCTTATATCATTCTTATATTTAATTTTTTTAAAAAAAATATTCACATTCATTTATAGTCTCTTCTTTCTCCTTCAAAAATTTACTATATTTTTATTTATATGATTTAAATTCATATCATACGTCGAACTCGTTATCTCTTTTCACAGGATAAGCATAAGAAAGATTCACAATTTTCAAATTAGTAAAATTTCATTAATCAAGATATCTTTAAAAAAAATATTTCTCTATCTAGTTTTAGTAAAATTGCATTTTTCAGCTAATAAACCTTATTCTCTTAATTATTGTTTTCGATCGCAAATGACCCGTCAACTTTTCTGATTAAATTAGAGTAAACAAGATTTAATTCACACTAGATGAATGATTCAATTTTTCCATATATATATTATGTGTGTAATTCAATTTTCTAAGTGGCGTGTCGCTATTAGATTACAATGTTAATATAATATTTCAAGAGTGGATTGATTGGCGAAAATAAATAATTTCACCGTCTCAATTTATTTGATTAATTTTAATTTGGTATATTTTTCAATAAACAAAAATTAAAAAAAAATTGATATTATAATTAAAATATGTGAATTTTATTAAAATATTTTTTAATTTTATAATTCTCATATGAAAAACTAAAACGAAAACAAATAATTGAAACAAAAAAAAGCACTAAGAGCGTTTGAATTCGCTTATATTTAGGTATTGTTGACTTTAATATTTATCCACACACAAACCTTAATATATATTTTGTGACGAGATTTCTCTCTTATTAAAAATTTTTCAAATTCGAAAAACGATCTTTCTTTATTCATTTTGTCTCAATTTATATGATCTATTTTTTATTTAGTCTAAAAAAGAATAATAATATATTTTTATATTAAATAATAATTTAATTTTTAAATAATTATTTTATCCAGAATTATACAAATATCTATCACTTGTTTTAATTTTTTTTTCTTAAACTTTCTATCAAGCCAAACTAACTCATATAAAATAAAACCAAAAAAATAGAGGTACTCCTCTTATATTATTTGTCCATCATTGACTTTGCACAATTTTAAAGTTAAATTTAAAATTAAAAATTAAATATAAAATCATCCATTTAACTTCATAAAATAAACAAGTATTGTTGAATATGTTAAAAAATAGTGCCTATTATTGGACAGATAATAAATTCAATATCTTGAAAAATATAATAATAAATGACTATAAAGTAAAAAAATATTAATCAAACATTTCAAAACTGTATAATGAAACACAATATTAATAATTGTTGGACGAAAAAAGTATTAGAGAGTTGCCCCCAAAAAATATATATATATATACATAAATTTAAATATAATCAAACTTCAATATAAACACGTAAAAAAAAAAAAAAAAGTCGGTTTAACTAAGAAAAAGTATCGACCAAGTGTCAACTAAGGAGAGGACCTTTGCGTCTAAATAGTGGCCAATATTCACGTGGCCCCAAATTAAACCCTAGTCCATATTTGCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATAATGGATAGAGGAAATACAACAGAAATAACATATACGTAATAGAAAAGCATGATTTTTCTAAATAAATTAAATATTTATTTTATAGAAATAAAAAAATTGAAAGTAACTTTCTTTATTACAATTATAGACGATATAATACACATAGGGGTTGTTTGGTACAAACATTGATAATGCATGGATTAATAATGCATGGATTAGTAATGTACGGATTAATAGTGCAAGGATTATTTTTTTGTAAATGTTTGGTTCACTACTTTCTACCTAATTTTGTCTTTAATTTATAATTTTACAAAAAAATTCTTTTCTATTATACCCTCGTATTATTATGAGTGTTTATTTCATGTAATTGGGTCAAGGTAATAACCATCGGACCGGATAATTTTTTGAAAGAATTTTTTGTTTCATTTAATTAGTTAAATCATATACATATATACAAAATTATTATTAATTTTAAGGTAAGATGTACCATTAAGAGGATCAATGATGGCACAATATACTTCTAATTTTTTGTGGGTTAAGTATATATCTTAAATTTAACATAGATTAAGACTACTTAAATTGTTAATACCTAAAGCTTATTTTTATTTTTATTTTTATTTTTAAAACAAATAGTTCAAGTGGTAATTGACAAATTATCTTGAATATAAAAATAAAAAAAAATAAAGAATTTTTTTTTAGTAAAATCATTAAATTACACCAAACGAATTTGGAGAATTAAAAAGGAACATTTATAACCACTCCAATACAAATAAAAAGGAAATTAAATTACAAAAGAAATATAAAAAAAGAATAAAGGGTTAGTTTAGTCATTTAAGGATCTTATTCAGGGTTTAACAAACCTTGGATTAGTTATCCCTCCATTTCCAAGGGATAAGATAACTCATACGGAAAATGGTCAAAAATACCCTTGAACTATTCGAAATAGCTCAAATATACCTTTGAACTATATTTTCGCTCAAAAATACCCTTCTCCTCAAACTATAGGGTTAAAAAATAAGACAACTTTCACATATAGCAAATAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATGCGCTCCATAGCAAACATATGAACTATATAATTCGATATACATATACAGTTGAAGCAAATTGTATAAAACAAATTGTATAAAACAAGAAAGAGAAAGACACTTGGGCGGGGAATTGTATAAAAACGAATTGTATTATTATAAGTATATAGAATGATTATATACAATTTGAATTTGTATAAAATGAGAAAGAGAGAAAGACAAAAGAGACTTGACAAGGAATATACAATTGAATCGAGTTGTATAAAACGAGAAAGAGAGAAAATTAGATACAATTTGAAAATTGTATAAAACGAGAAAGAGAGAAATGTAAAAGAAACTGGGCATGGGAGTATTTTTATTGTATAAATATAAGTGTATAGGACGAAAATATATGTACTTGCATGTGTATATACAATTTTCTCACGCTTTATTCAAACAGAAACACAATTTATACATTTCGCTCCTGTTTGTATAAGTGAGAAAGGCGAGGGTGGCGAGCGAGATCTGGAAGAGGGGAGAAAGGGGAATAAAAATATATGTATTTTGTACAATTTTCTCTGCTTTATACAATTAGAAACACTTTTTATACACTTGTGTTTGTATAAAAAGTGAGGAGGTGAGTGAGAGATTGGAGGAGAGTGGCGAGCGAGATATTTGGGAGAGAGGCGTCTGACAATTTTTTGCAAACGTTTGCTATGGAACACAATT-AATCAAATCCTAGCTACTCCATTTGTTTTAGATTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728292" ref_strand="+" ref_description="SGN-E728292 [LA17BD03]">
      <seq>gacatagagagtcgaagctactgaatttcagatcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcaacaggcgtggatatgcagcggcatcgcgaggtgcagtttccggtgtagcaaaaggagggccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatggatgccagatccagataccgattactataggccggaaggacaagcaaatgacattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggataatcatcggagattttcgatcaacgagaagagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgcttagttgcttttaaattttaagcttattgttatatctatcttttattagtatcttttattcatgcgaagganataattatagtattagtattaaaaaaaaaaaaaaaaaacaaaaaaaacttgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="27504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55758" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="644" r_length="439" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55757" i_stop="54310" i_length="1448">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54309" g_stop="54274" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="680" r_length="36" r_score="0.694"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E728292" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55758"/>
          <exon e_start="54309" e_stop="54274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATAATGGATAGAGGAAATACAACAGAAATAACATATACGTAATAGAAAAGCATGATTTTTCTAAATAAATTAAATATTTATTTTATAGAAATAAAAAAATTGAAAGTAACTTTCTTTATTACAATTATAGACGATATAATACACATAGGGGTTGTTTGGTACAAACATTGATAATGCATGGATTAATAATGCATGGATTAGTAATGTACGGATTAATAGTGCAAGGATTATTTTTTTGTAAATGTTTGGTTCACTACTTTCTACCTAATTTTGTCTTTAATTTATAATTTTACAAAAAAATTCTTTTCTATTATACCCTCGTATTATTATGAGTGTTTATTTCATGTAATTGGGTCAAGGTAATAACCATCGGACCGGATAATTTTTTGAAAGAATTTTTTGTTTCATTTAATTAGTTAAATCATATACATATATACAAAATTATTATTAATTTTAAGGTAAGATGTACCATTAAGAGGATCAATGATGGCACAATATACTTCTAATTTTTTGTGGGTTAAGTATATATCTTAAATTTAACATAGATTAAGACTACTTAAATTGTTAATACCTAAAGCTTATTTTTATTTTTATTTTTATTTTTAAAACAAATAGTTCAAGTGGTAATTGACAAATTATCTTGAATATAAAAATAAAAAAAAATAAAGAATTTTTTTTTAGTAAAATCATTAAATTACACCAAACGAATTTGGAGAATTAAAAAGGAACATTTATAACCACTCCAATACAAATAAAAAGGAAATTAAATTACAAAAGAAATATAAAAAAAGAATAAAGGGTTAGTTTAGTCATTTAAGGATCTTATTCAGGGTTTAACAAACCTTGGATTAGTTATCCCTCCATTTCCAAGGGATAAGATAACTCATACGGAAAATGGTCAAAAATACCCTTGAACTATTCGAAATAGCTCAAATATACCTTTGAACTATATTTTCGCTCAAAAATACCCTTCTCCTCAAACTATAGGGTTAAAAAATAAGACAACTTTCACATATAGCAAATAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATGCGCTCCATAGCAAACATATGAACTATATAATTCGATATACATATACAGTTGAAGCAAATTGTATAAAACAAATTGTATAAAACAAGAAAGAGAAAGACACTTGGGCGGGG</genome_strand>
        <mrna_strand>GACATAGAGAGTCGAAGCTACTGAATTTCAGATCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCGCGAGGTGCAGTTTCCGGTGTAGCAAAAGGAGGGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGATGCCAGATCCAGATACCGATTACTATAGGCCGGAAGGACAAGCAAATGACATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGATAATCATCGGAGATTTTCGATCAACGAGAAGAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTAGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTATCTTTTATTAGTATCTTTTATTCATGCGAAGGANATAATTATAGTATTAGTATTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACAAAAAAAACTTGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720211" ref_strand="+" ref_description="SGN-E720211 [FC10AE11]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="27504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55743" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="687" r_length="454" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55742" i_stop="54700" i_length="1043">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54699" g_stop="54652" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="735" r_length="48" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720211" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55743"/>
          <exon e_start="54699" e_stop="54652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATAATGGATAGAGGAAATACAACAGAAATAACATATACGTAATAGAAAAGCATGATTTTTCTAAATAAATTAAATATTTATTTTATAGAAATAAAAAAATTGAAAGTAACTTTCTTTATTACAATTATAGACGATATAATACACATAGGGGTTGTTTGGTACAAACATTGATAATGCATGGATTAATAATGCATGGATTAGTAATGTACGGATTAATAGTGCAAGGATTATTTTTTTGTAAATGTTTGGTTCACTACTTTCTACCTAATTTTGTCTTTAATTTATAATTTTACAAAAAAATTCTTTTCTATTATACCCTCGTATTATTATGAGTGTTTATTTCATGTAATTGGGTCAAGGTAATAACCATCGGACCGGATAATTTTTTGAAAGAATTTTTTGTTTCATTTAATTAGTTAAATCATATACATATATACAAAATTATTATTAATTTTAAGGTAAGATGTACCATTAAGAGGATCAATGATGGCACAATATACTTCTAATTTTTTGTGGGTTAAGTATATATCTTAAATTTAACATAGATTAAGACTACTTAAATTGTTAATACCTAAAGCTTATTTTTATTTTTATTTTTATTTTTAAAACAAATAGTTCAAGTGGTAATTGACAAATTATCTTGAATATAAAAATAAAAAAAAATAAAGAATTTTTTTTTAGTAAAATCATTAAATTACACCAAACGAATTTGGAGAATTAAAAAGGAACATTTATAACCACTCCAATACAAATAAAAAGGAAATTAAATTACAAAAGAAATATAAAAAAAGAATAAA</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTANA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712785" ref_strand="+" ref_description="SGN-E712785 [FB05DC06]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaccccgggtttttttttttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="9958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55762" i_stop="54904" i_length="859">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54903" g_stop="54849" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="707" r_length="55" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712785" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
          <exon e_start="54903" e_stop="54849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATAATGGATAGAGGAAATACAACAGAAATAACATATACGTAATAGAAAAGCATGATTTTTCTAAATAAATTAAATATTTATTTTATAGAAATAAAAAAATTGAAAGTAACTTTCTTTATTACAATTATAGACGATATAATACACATAGGGGTTGTTTGGTACAAACATTGATAATGCATGGATTAATAATGCATGGATTAGTAATGTACGGATTAATAGTGCAAGGATTATTTTTTTGTAAATGTTTGGTTCACTACTTTCTACCTAATTTTGTCTTTAATTTATAATTTTACAAAAAAATTCTTTTCTATTATACCCTCGTATTATTATGAGTGTTTATTTCATGTAATTGGGTCAAGGTAATAACCATCGGACCGGATAATTTTTTGAAAGAATTTTTTGTTTCATTTAATTAGTTAAATCATATACATATATACAAAATTATTATTAATTTTAAGGTAAGATGTACCATTAAGAGGATCAATGATGGCACAATATACTTCTAATTTTTTGTGGGTTAAGTATATATCTTAAATTTAACATAGATTAAGACTACTTAAATTGTTAATACCTAAAGCTTATTTTTATTTTTATTTTTAT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTTTTTTTTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716505" ref_strand="+" ref_description="SGN-E716505 [FB17AH11]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="10126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55728" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="675" r_length="469" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55727" i_stop="55464" i_length="264">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55445" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="694" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716505" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55728"/>
          <exon e_start="55463" e_stop="55445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATAA</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTT........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725330" ref_strand="+" ref_description="SGN-E725330 [FC26DB04]">
      <seq>gggcgattggcggccaatcggccgaattgctcctcgcttatgcaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttnnnaannaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56893" g_stop="56655" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="264" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="717" r_length="453" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55743" i_stop="55464" i_length="280">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55446" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="735" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725330" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56893" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
          <exon e_start="55463" e_stop="55446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACAATA</genome_strand>
        <mrna_strand>ATTGCTCCTCGCTTATGCAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTNN........................................................................................................................................................................................................................................................................................NAANNAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305337" ref_strand="+" ref_description="SGN-E305337 [cLEX-15-B14]">
      <seq>gttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctannnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57021" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56721" g_stop="56655" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="525" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55738" i_stop="55464" i_length="275">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55449" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="540" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E305337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56721" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
          <exon e_start="55463" e_stop="55449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCATAACAAACA</genome_strand>
        <mrna_strand>GTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT...................................................................................................................................................................................................................................................................................ANNNAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722601" ref_strand="+" ref_description="SGN-E722601 [FC17DA10]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggcctgaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaccnanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="684" r_length="438" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55458" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="690" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="744"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722601" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCTGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................AAACCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711099" ref_strand="+" ref_description="SGN-E711099 [FB01AB01]">
      <seq>cgcttcccgaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaannnnnnngggnaaaaaaaaaaaaaaaanaaccctggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57173" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56878" g_stop="56655" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="662" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55458" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="668" r_length="6" r_score="0.333"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="695"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711099" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56878" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCA</genome_strand>
        <mrna_strand>CGCTTCCCGAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................AAANNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733685" ref_strand="+" ref_description="SGN-E733685 [LB10CF12]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaannaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="656" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55458" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="662" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="675"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733685" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCA</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................AAANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715856" ref_strand="+" ref_description="SGN-E715856 [FB15BH03]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaannanaaaaaaaaaaaaaaaaaaaaantttcggggggggggccgggaccccattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="633" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55458" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="639" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="662"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715856" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATCA</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................AAANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713975" ref_strand="+" ref_description="SGN-E713975 [FB10AG01]">
      <seq>cctatgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannnnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="656" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55459" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="661" r_length="5" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="710"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713975" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATC</genome_strand>
        <mrna_strand>CCTATGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................NNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717007" ref_strand="+" ref_description="SGN-E717007 [FB18CF12]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannnnnnnaaannnannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="656" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55459" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="661" r_length="5" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="717"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717007" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATC</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................NNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716364" ref_strand="+" ref_description="SGN-E716364 [FB16DD07]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannnnnnnnnnnnnnnnnnanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="655" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55459" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="660" r_length="5" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="685"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716364" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATC</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................NNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716675" ref_strand="+" ref_description="SGN-E716675 [FB17CH08]">
      <seq>cgataaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannnnnanaaaaaaaaaaaaaaaaaaanccttcgggggggggccgggaaccaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="644" r_length="438" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55463" g_stop="55459" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="649" r_length="5" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="671"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716675" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
          <exon e_start="55463" e_stop="55459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATTTATTTTTTGTTTCTTTTGGGAAAATCTCATAACATTCTTGCAACTTTTTTTAATCAAACTAATGTTATAATCATATCTTAGTATTTTTAAGATTATCATCAATATATTAATAAAATAAGTGATATTCAAAAGTTATATCAAAAGTATTATAAATTATAATCTTTTATATATTTATATTTTTAAAATGTTAATCAAATTTTTTATAATTTTAACTCTAAAAATAGAGATC</genome_strand>
        <mrna_strand>CGATAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTA.......................................................................................................................................................................................................................................................................................................NNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244244" ref_strand="+" ref_description="SGN-E244244 [cLEF-37-K15](-)">
      <seq>tttatcagaaaaatataccagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgtaatatctttctttaattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctatttttttcatctttttttttttgaattcttcaatctccaggtttacgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56190" stop="55388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55890" g_stop="55688" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244244" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55890" e_stop="55688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTC-TTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATT</genome_strand>
        <mrna_strand>TTTATCAGAAAAATATACCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTAATATCTTTCTTTAATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCATCTTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717043" ref_strand="+" ref_description="SGN-E717043 [FB18DB01]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttcttttttttttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55717" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="697" r_length="480" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717043" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTTTTTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723267" ref_strand="+" ref_description="SGN-E723267 [FC19DH11]">
      <seq>aatcggccgaattgctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttctttttttttttgaaaaaaaaaaaanaaaaaaaaaaaaaacccccnnnnaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56903" g_stop="56655" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55719" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="727" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="755"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723267" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56903" e_stop="56655"/>
          <exon e_start="56196" e_stop="55719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723225" ref_strand="+" ref_description="SGN-E723225 [FC19DC12]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttctttttttttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55719" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="711" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="754"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723225" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715438" ref_strand="+" ref_description="SGN-E715438 [FB14BB05]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttcttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55719" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="696" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715438" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724818" ref_strand="+" ref_description="SGN-E724818 [FC25BA06]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttcttannnaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55728" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="715" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="778"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724818" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721069" ref_strand="+" ref_description="SGN-E721069 [FC12CG04]">
      <seq>gctcgcttatgtaaccccaatttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55728" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="702" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="744"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721069" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCCAATTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719844" ref_strand="+" ref_description="SGN-E719844 [FC09AB08]">
      <seq>ctcgcttatgtaacccctatttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaaaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaaaacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagaatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55729" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="700" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719844" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCCTATTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAAACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGAATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721152" ref_strand="+" ref_description="SGN-E721152 [FC12DG04]">
      <seq>ttcgccggaaaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcaaaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttataagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctatttttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55729" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="680" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721152" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCT</genome_strand>
        <mrna_strand>TTCGCCGGAAAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAAAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATAAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCTATTTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715050" ref_strand="+" ref_description="SGN-E715050 [FB13AG07]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55735" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="664" r_length="462" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715050" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308864" ref_strand="+" ref_description="SGN-E308864 [cLEY-23-A20]">
      <seq>taccacgaggcttatctggaagcaactgaaaatctttgaaggggggccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56292" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56005" g_stop="55735" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E308864" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56005" e_stop="55735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTT</genome_strand>
        <mrna_strand>TACCACGAGGCTTATCTGGAAGCAACTGAAAATCTTTGAAGGGGGGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724579" ref_strand="+" ref_description="SGN-E724579 [FC24CB11]">
      <seq>aatcggccgaattgctcgcttatgtacccctaaatgcgccggagaaagagagtcgaagctacagaattccagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaaaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcaaaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtatttgtattaatcttcgggctttagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55736" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="707" r_length="461" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724579" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTACCCCTAAATGCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTCCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAAAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTTGTATTAATCTTCGGGCTTTAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720360" ref_strand="+" ref_description="SGN-E720360 [FC10CD07]">
      <seq>aatcggccgaattgctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctnnnnnaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56903" g_stop="56655" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="707" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="756"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720360" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56903" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720451" ref_strand="+" ref_description="SGN-E720451 [FC10DD08]">
      <seq>aatcggccgaattgctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctannnnaaaananaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56903" g_stop="56655" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="707" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="756"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720451" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56903" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720402" ref_strand="+" ref_description="SGN-E720402 [FC10CH04]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctannnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="704" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="755"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720402" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721738" ref_strand="+" ref_description="SGN-E721738 [FC15AD11]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="704" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="751"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721738" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724989" ref_strand="+" ref_description="SGN-E724989 [FC25DA04]">
      <seq>aatcggccgaattgatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57181" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56893" g_stop="56655" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="697" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="741"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724989" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56893" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722851" ref_strand="+" ref_description="SGN-E722851 [FC18CB06]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgccccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaaaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcaaaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="691" r_length="458" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722851" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCCCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAAAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723149" ref_strand="+" ref_description="SGN-E723149 [FC19CC02]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcnnnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="691" r_length="458" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="729"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723149" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717558" ref_strand="+" ref_description="SGN-E717558 [FC02AD02]">
      <seq>aatcggccgaattctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="245" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="703" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="737"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717558" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713956" ref_strand="+" ref_description="SGN-E713956 [FB10AE06]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctaaaannnnaaaanaaaaaaaaaaaaaaaaaaaanntttcgggggggggggcgggaacccttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="681" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="715"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713956" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712830" ref_strand="+" ref_description="SGN-E712830 [FB05DG07]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="675" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="687"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712830" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714490" ref_strand="+" ref_description="SGN-E714490 [FB11CD05]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctaaannnngaaagaaaaaaccaaggggaaaatttggggggggggccgggcccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="671" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714490" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714498" ref_strand="+" ref_description="SGN-E714498 [FB11CE02]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctaaaaannannanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="671" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="694"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714498" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391990" ref_strand="+" ref_description="SGN-E391990 [TUS-34-C3](-)">
      <seq>ccccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57164" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="668" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E391990" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CCCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397839" ref_strand="+" ref_description="SGN-E397839 [TUS-34-E3](-)">
      <seq>cgccggagaaagagagttgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttagatcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57164" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="668" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E397839" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CGCCGGAGAAAGAGAGTTGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733364" ref_strand="+" ref_description="SGN-E733364 [LB04CG02]">
      <seq>ccgataaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57162" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="665" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="679"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733364" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>CCGATAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697827" ref_strand="+" ref_description="SGN-E697827 [FA04BF04]">
      <seq>agagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57154" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56854" g_stop="56655" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="658" r_length="458" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="671"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E697827" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56854" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717086" ref_strand="+" ref_description="SGN-E717086 [FB18DE10]">
      <seq>gagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57153" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="657" r_length="458" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="668"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717086" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712713" ref_strand="+" ref_description="SGN-E712713 [FB05CE01]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttagatcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55739" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="653" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="671"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712713" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716146" ref_strand="+" ref_description="SGN-E716146 [FB16BA02]">
      <seq>gtatccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaannnanannnnnnna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55741" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="679" r_length="456" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716146" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATC</genome_strand>
        <mrna_strand>GTATCCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAAAAANNNANANNNNNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701359" ref_strand="+" ref_description="SGN-E701359 [FA15DA06]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55741" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="674" r_length="456" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E701359" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATC</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719915" ref_strand="+" ref_description="SGN-E719915 [FC09BA01]">
      <seq>aatcggccgaattgctcgcttatgtaaccccaatttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="699" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="733"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719915" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCCAATTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725248" ref_strand="+" ref_description="SGN-E725248 [FC26CB05]">
      <seq>atatagggcgattggcggccaatcggccgaattgctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttnnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56893" g_stop="56655" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="269" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="722" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="754"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725248" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56893" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>ATTGCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722299" ref_strand="+" ref_description="SGN-E722299 [FC16DD10]">
      <seq>tgcctcgcttatgtacccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttnnnananaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57187" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56889" g_stop="56655" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="688" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="736"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722299" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56889" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>TGCCTCGCTTATGTACCCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725014" ref_strand="+" ref_description="SGN-E725014 [FC25DC07]">
      <seq>tagggcgattggcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttnnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="263" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="716" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="737"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725014" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721879" ref_strand="+" ref_description="SGN-E721879 [FC15CC09]">
      <seq>aatcggccgaattggcttatgtaaccctacgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57185" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56883" g_stop="56655" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="243" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="696" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="737"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721879" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56883" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>GCTTATGTAACCCTACGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719863" ref_strand="+" ref_description="SGN-E719863 [FC09AD06]">
      <seq>aatcggccgaattgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57185" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56883" g_stop="56655" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="242" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="695" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="752"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719863" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56883" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>GCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734378" ref_strand="+" ref_description="SGN-E734378 [LB12CA10]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="676" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="686"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E734378" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711757" ref_strand="+" ref_description="SGN-E711757 [FB02DE11]">
      <seq>cggttaagcggagaaagagagtcgaagctacagaatttcagtccgtcgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttannananaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56869" g_stop="56655" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="668" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="684"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711757" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56869" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>CGGTTAAGCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTCCGTCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714285" ref_strand="+" ref_description="SGN-E714285 [FB11AB01]">
      <seq>cgagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="214" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55744" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="594" r_length="380" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="604"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714285" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>CGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711578" ref_strand="+" ref_description="SGN-E711578 [FB02BE09]">
      <seq>ccccttaaaggagaaagagagtcgaagctacagaatttcagttccccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="215" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="668" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="679"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711578" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCCCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713885" ref_strand="+" ref_description="SGN-E713885 [FB09DG04]">
      <seq>cgtctgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57059" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56761" g_stop="56655" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55744" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="560" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="572"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713885" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56761" e_stop="56655"/>
          <exon e_start="56196" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>CGTCTGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708156" ref_strand="+" ref_description="SGN-E708156 [FA35AA06]">
      <seq>cggttcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56477" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56182" g_stop="55744" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="449"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E708156" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56182" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>CGGT-TCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688603" ref_strand="+" ref_description="SGN-E688603 [t3_tus_54_C10]">
      <seq>agagatgcagtgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgggctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56313" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56020" g_stop="55744" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="304"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E688603" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56020" e_stop="55744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG</genome_strand>
        <mrna_strand>AGAG-ATGCAG-TGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719470" ref_strand="+" ref_description="SGN-E719470 [FC07DH05]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctttcccgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55746" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="684" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="698"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719470" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262197" ref_strand="+" ref_description="SGN-E262197 [cLEG-58-L20]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcggggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55746" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="670" r_length="453" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E262197" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTC-GGGCTTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732349" ref_strand="+" ref_description="SGN-E732349 [LB01DG03]">
      <seq>cgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55746" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="665" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E732349" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTT</genome_strand>
        <mrna_strand>CGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722432" ref_strand="+" ref_description="SGN-E722432 [FC17BA10]">
      <seq>aatcggccgaattagatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggcttaataaanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57179" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56879" g_stop="56655" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="240" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55747" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="690" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="720"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722432" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56879" e_stop="56655"/>
          <exon e_start="56196" e_stop="55747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTT</genome_strand>
        <mrna_strand>ATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714928" ref_strand="+" ref_description="SGN-E714928 [FB12DD05]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55747" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="668" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714928" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723859" ref_strand="+" ref_description="SGN-E723859 [FC22BA01]">
      <seq>atagggcgattggcggcccctcggccgaattgctcgcttatgtaaccctataagggccggagaaagagagtcgaagctacagaatttcccttaaaagctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttcgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="264" r_length="232" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55748" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="713" r_length="449" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723859" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTATAAGGGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCCCTTAAAAGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTCGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715135" ref_strand="+" ref_description="SGN-E715135 [FB13BG08]">
      <seq>cctatgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgctatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaggcaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55751" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="664" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715135" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGG</genome_strand>
        <mrna_strand>CCTATGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGCTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272154" ref_strand="-" ref_description="SGN-E272154 [cLEN-4-G9]">
      <seq>gctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttcgaaaaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57061" stop="55452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56761" g_stop="56655" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55751" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="553" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="575"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E272154" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272154" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56761" e_stop="56655"/>
          <exon e_start="56196" e_stop="55751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGG</genome_strand>
        <mrna_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723492" ref_strand="+" ref_description="SGN-E723492 [FC20CG01]">
      <seq>gggcgattggcggccaatcggccgaattgcctcgcttatgtaaccctatgttcgccggagaaagagagtcgaagctacagaatttccgttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57187" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="262" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55752" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="707" r_length="445" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723492" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCG</genome_strand>
        <mrna_strand>CCTCGCTTATGTAACCCTATGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCCGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723004" ref_strand="+" ref_description="SGN-E723004 [FC19AB02]">
      <seq>cggccgattcccagggggatccgatgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaaaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="258" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55753" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="702" r_length="444" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723004" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTC</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722274" ref_strand="+" ref_description="SGN-E722274 [FC16DB03]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtaaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="689" r_length="443" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="717"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722274" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTAAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718080" ref_strand="+" ref_description="SGN-E718080 [FC03CE05]">
      <seq>tcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56899" g_stop="56655" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="687" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="721"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718080" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56899" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>TCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720310" ref_strand="+" ref_description="SGN-E720310 [FC10BG05]">
      <seq>cggccgaattgctcgcttatgtaaccctaatttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56898" g_stop="56655" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="686" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720310" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56898" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CGGCCGAAT-TGCTCGCTTATGTAACCCTAATTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721942" ref_strand="+" ref_description="SGN-E721942 [FC15DA03]">
      <seq>aatcggccgaattggtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57190" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56892" g_stop="56655" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="680" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="717"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721942" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56892" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>AATCGGC-CGAATTGGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724326" ref_strand="+" ref_description="SGN-E724326 [FC23DB01]">
      <seq>aatcggccgaattagctcgcttatgtcccataagttcgccggagaaagagagtcgaagctacagaatcccagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttanaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="246" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="689" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="717"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724326" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CTCGCTTATGT-CCCATAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATCCCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725258" ref_strand="+" ref_description="SGN-E725258 [FC26CC04]">
      <seq>gggcgattggcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="261" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="704" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="732"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725258" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724161" ref_strand="+" ref_description="SGN-E724161 [FC23BA04]">
      <seq>tcgcttatgtacccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtcttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57185" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56885" g_stop="56655" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="674" r_length="443" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724161" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56885" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>TCGCTTATGTACCCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTCTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720440" ref_strand="+" ref_description="SGN-E720440 [FC10DC09]">
      <seq>aatcggccgaattagatgtaaccctaagtccgctggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57179" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56879" g_stop="56655" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="240" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="683" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="727"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720440" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56879" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>ATGTAACCCTAAGTCCGCTGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708169" ref_strand="+" ref_description="SGN-E708169 [FA35AB07]">
      <seq>gtatccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="666" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E708169" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>GTATCCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714778" ref_strand="+" ref_description="SGN-E714778 [FB12BF06]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="666" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714778" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723688" ref_strand="+" ref_description="SGN-E723688 [FC21BE01]">
      <seq>gaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57175" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="665" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="712"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723688" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>GAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711481" ref_strand="+" ref_description="SGN-E711481 [FB02AE06]">
      <seq>cgccttaagttcgccggagaaagagagtcgaagctacagaattccagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57173" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="664" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="674"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711481" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CGCCTTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTCCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713741" ref_strand="+" ref_description="SGN-E713741 [FB09CA12]">
      <seq>cgtttaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="663" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="677"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713741" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CGTTTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699477" ref_strand="+" ref_description="SGN-E699477 [FA10BA11]">
      <seq>ccctatggtcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57173" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56873" g_stop="56655" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="662" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="678"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E699477" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56873" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CCCTATGGTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714262" ref_strand="+" ref_description="SGN-E714262 [FB10DG12]">
      <seq>cccttagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57173" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56873" g_stop="56655" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="662" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714262" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56873" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CCCTTAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714905" ref_strand="+" ref_description="SGN-E714905 [FB12DB06]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="661" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="672"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714905" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715821" ref_strand="+" ref_description="SGN-E715821 [FB15BE01]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="661" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="680"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715821" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716925" ref_strand="+" ref_description="SGN-E716925 [FB18BG04]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="661" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="675"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716925" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713201" ref_strand="+" ref_description="SGN-E713201 [FB08AA05]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttanaaaaaaaaaattanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="660" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="672"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713201" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733691" ref_strand="+" ref_description="SGN-E733691 [LB10CG06]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="660" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="679"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733691" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714074" ref_strand="+" ref_description="SGN-E714074 [FB10BG08]">
      <seq>agttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57168" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="657" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714074" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712206" ref_strand="+" ref_description="SGN-E712206 [FB04AH01]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="656" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="675"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712206" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712874" ref_strand="+" ref_description="SGN-E712874 [FB06AC06]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="649" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="664"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712874" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248608" ref_strand="-" ref_description="SGN-E248608 [cLEF-58-K1]">
      <seq>tcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatcttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57040" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56740" g_stop="56655" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="529" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="554"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E248608" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56740" e_stop="56655"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>TCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734743" ref_strand="+" ref_description="SGN-E734743 [LB13BH08]">
      <seq>cttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56505" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56436" g_stop="56424" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56423" i_stop="56197" i_length="227">
            <donor d_prob="0.508" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55754" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="456" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="474"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E734743" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56436" e_stop="56424"/>
          <exon e_start="56196" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTT</genome_strand>
        <mrna_strand>CTTTTCTCAGCAG...................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721616" ref_strand="+" ref_description="SGN-E721616 [FC14CC05]">
      <seq>ccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57162" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56862" g_stop="56655" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55755" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="650" r_length="442" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721616" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56862" e_stop="56655"/>
          <exon e_start="56196" e_stop="55755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCT</genome_strand>
        <mrna_strand>CCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723719" ref_strand="+" ref_description="SGN-E723719 [FC21BH07]">
      <seq>tggcggccaaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="255" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55756" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="696" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723719" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATC</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246749" ref_strand="+" ref_description="SGN-E246749 [cLEF-45-P7]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55756" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="647" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246749" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATC</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306599" ref_strand="-" ref_description="SGN-E306599 [cLEY-19-A15]">
      <seq>gctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57061" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56761" g_stop="56655" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55757" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="547" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E306599" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306599" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56761" e_stop="56655"/>
          <exon e_start="56196" e_stop="55757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAAT</genome_strand>
        <mrna_strand>GCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727729" ref_strand="+" ref_description="SGN-E727729 [LA15CC10]">
      <seq>cgttaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56873" g_stop="56655" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55758" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="658" r_length="439" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E727729" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56873" e_stop="56655"/>
          <exon e_start="56196" e_stop="55758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAA</genome_strand>
        <mrna_strand>CGTTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718074" ref_strand="+" ref_description="SGN-E718074 [FC03CD07]">
      <seq>ggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttaaatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57117" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56817" g_stop="56655" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55758" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="602" r_length="439" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718074" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56817" e_stop="56655"/>
          <exon e_start="56196" e_stop="55758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAA</genome_strand>
        <mrna_strand>GGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTAAATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719622" ref_strand="+" ref_description="SGN-E719622 [FC08BF02]">
      <seq>aatcggccgaattgctcgcttatgtaaccccattttcgccggagaaagagagtcaaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="684" r_length="438" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719622" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCCATTTTCGCCGGAGAAAGAGAGTCAAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724815" ref_strand="+" ref_description="SGN-E724815 [FC25BA01]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtnttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="684" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="727"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724815" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722861" ref_strand="+" ref_description="SGN-E722861 [FC18CC05]">
      <seq>tcggccgaatttgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtnttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57181" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56890" g_stop="56655" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="673" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="714"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722861" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56890" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCGGC-CGAATTTGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722362" ref_strand="+" ref_description="SGN-E722362 [FC17AB12]">
      <seq>gggcgattggcggccaatcggccgaattgctcgcttatgtaaccctcagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtnttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="261" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="699" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="744"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722362" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTCAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720706" ref_strand="+" ref_description="SGN-E720706 [FC11CD09]">
      <seq>gggcgattggcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtnttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="261" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="699" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="726"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720706" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746312" ref_strand="+" ref_description="SGN-E746312 [GI|47104742]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="661" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E746312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247741" ref_strand="+" ref_description="SGN-E247741 [cLEF-42-F17]">
      <seq>aaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57175" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="659" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="670"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247741" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245513" ref_strand="+" ref_description="SGN-E245513 [cLEF-43-P11]">
      <seq>aaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaatctttcggctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57175" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="659" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="687"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744562" ref_strand="+" ref_description="SGN-E744562 [GI|1172166]">
      <seq>tcgacactagtggatccaaagaattcggcacgagcctaagttcgccggagaaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57174" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="253" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="691" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E744562" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAG-AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374904" ref_strand="+" ref_description="SGN-E374904 [TUS-15-A17](-)">
      <seq>cctaagttcgccgaagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="656" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E374904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGAAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273496" ref_strand="+" ref_description="SGN-E273496 [cLEN-3-J14]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatccgnggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="658" r_length="441" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="668"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E273496" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCAT-C--GGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCCGNGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378492" ref_strand="+" ref_description="SGN-E378492 [TUS-15-A17]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="655" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="665"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E378492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552877" ref_strand="+" ref_description="SGN-E552877 [cTSB-5-F13]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="655" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E552877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544533" ref_strand="+" ref_description="SGN-E544533 [TUS-66-O16]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="221" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55759" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="586" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E544533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549058" ref_strand="+" ref_description="SGN-E549058 [TUS-66-O16](-)">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="221" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55759" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="586" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E549058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543994" ref_strand="+" ref_description="SGN-E543994 [TUS-66-B14]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="651" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="662"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E543994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307686" ref_strand="+" ref_description="SGN-E307686 [cLEY-16-C9]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccggtgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56189" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="220" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55759" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="585" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="595"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E307686" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="56189"/>
          <exon e_start="56123" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAT.................................................................ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGGTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249554" ref_strand="+" ref_description="SGN-E249554 [cLEF-56-F24]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="649" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="661"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249554" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370155" ref_strand="+" ref_description="SGN-E370155 [TUS-28-C4](-)">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="641" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="652"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E370155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370156" ref_strand="+" ref_description="SGN-E370156 [TUS-28-C4]">
      <seq>aaagatgagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="641" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="653"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E370156" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGA-GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AAAGATGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246971" ref_strand="+" ref_description="SGN-E246971 [cLEF-41-K11]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57155" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="639" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="649"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353871" ref_strand="+" ref_description="SGN-E353871 [cTOS-10-C7]">
      <seq>tccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagaatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57053" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56753" g_stop="56655" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="537" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="548"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E353871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56753" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGAATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305770" ref_strand="+" ref_description="SGN-E305770 [cLEX-14-K22]">
      <seq>tcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttatggctatatctttcttttattagtatctttcattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57046" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56746" g_stop="56655" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="530" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E305770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56746" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATGGCTATATCTTTCTTTTATTAGTATCTTTCATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249150" ref_strand="-" ref_description="SGN-E249150 [cLEF-50-C5]">
      <seq>ctttctcaaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57018" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56718" g_stop="56655" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="502" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249150" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249150" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56718" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>CTTTCTCAAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304199" ref_strand="+" ref_description="SGN-E304199 [cLEX-6-M23](-)">
      <seq>gactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatggaataattatagtattagtgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57002" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56702" g_stop="56655" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="487" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="497"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304199" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56702" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGGAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303225" ref_strand="+" ref_description="SGN-E303225 [cLEX-5-K11]">
      <seq>ttgttttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56993" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56694" g_stop="56655" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55759" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="478" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56694" e_stop="56655"/>
          <exon e_start="56196" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTGTTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367871" ref_strand="+" ref_description="SGN-E367871 [TUS-22-A17](-)">
      <seq>gcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactatagtccgcaaggacaagcaaatgagattgacgctgatgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgccccgttgatctccggttactcatcggagattttcgatcatcgaaaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcgttaatgttatatctttcttttattagtatcttttattcatgcaaatgaaataattataatattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56480" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56180" g_stop="55759" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E367871" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56180" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGC-TTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>GCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGTCCGCAAGGACAAGCAAATGAGATTGACGCTGATGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCCCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCATCGAAAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCGTTAATGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAATATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304210" ref_strand="+" ref_description="SGN-E304210 [cLEX-6-O23](-)">
      <seq>tttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaagaaaaatctcgagagggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56464" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55759" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="425"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200370" ref_strand="+" ref_description="SGN-E200370 [cLEC-1-A21](-)">
      <seq>tttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56464" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55759" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="424"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E200370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339873" ref_strand="+" ref_description="SGN-E339873 [cTOF-3-G10]">
      <seq>agatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56379" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56079" g_stop="55759" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E339873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56079" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>AGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308597" ref_strand="+" ref_description="SGN-E308597 [cLEY-21-O14]">
      <seq>ttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56229" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55929" g_stop="55759" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E308597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55929" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</genome_strand>
        <mrna_strand>TTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711648" ref_strand="+" ref_description="SGN-E711648 [FB02CD01]">
      <seq>cgattaaaagttcgncggagaaagagagtcgaagctacagaatctctgatcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57169" stop="55460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55760" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="659" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711648" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTT</genome_strand>
        <mrna_strand>CGATTAAAAGTTCGNCGGAGAAAGAGAGTCGAAGCTACAGAATCTCTGATCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713552" ref_strand="+" ref_description="SGN-E713552 [FB08DG09]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55760" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="655" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713552" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717042" ref_strand="+" ref_description="SGN-E717042 [FB18DA12]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55760" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="655" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717042" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703733" ref_strand="+" ref_description="SGN-E703733 [FA22BC07]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaatttctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55760" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="654" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E703733" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAATTTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714190" ref_strand="+" ref_description="SGN-E714190 [FB10DA12]">
      <seq>cgttacctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56878" g_stop="56655" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55761" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="659" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714190" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56878" e_stop="56655"/>
          <exon e_start="56196" e_stop="55761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</genome_strand>
        <mrna_strand>CGTTA-CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710732" ref_strand="+" ref_description="SGN-E710732 [FA56CB06]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55761" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="649" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E710732" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719385" ref_strand="+" ref_description="SGN-E719385 [FC07CG11]">
      <seq>cgccggagaaagagagtcgaagctacagaattccagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57164" stop="55461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55761" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="646" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719385" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</genome_strand>
        <mrna_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTCCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212592" ref_strand="+" ref_description="SGN-E212592 [cLEC-74-D24]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57155" stop="55461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55761" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="637" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E212592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711639" ref_strand="+" ref_description="SGN-E711639 [FB02CC04]">
      <seq>cccttaaggatttctcctcgcttatgtaaccctaagttcgccccagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56902" g_stop="56655" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="682" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="703"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711639" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56902" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCCTTAAGGATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCCCAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719565" ref_strand="+" ref_description="SGN-E719565 [FC08BA03]">
      <seq>aatcggccgaattgctcgcttatgtaaccccatttacgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="748"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719565" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCCATTTACGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722904" ref_strand="+" ref_description="SGN-E722904 [FC18CH01]">
      <seq>aatcggccgaattgctcgcttatgtaaccctattatcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="741"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722904" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTATTATCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719936" ref_strand="+" ref_description="SGN-E719936 [FC09BC01]">
      <seq>aatcggccgaattgctcgcttatgtaaccctatgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttcttcctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="734"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719936" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTATGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTCCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722388" ref_strand="+" ref_description="SGN-E722388 [FC17AE03]">
      <seq>aatcggccgaattgctcgcttatgtaacccccagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="724"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722388" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCCCAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717573" ref_strand="+" ref_description="SGN-E717573 [FC02AE06]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="733"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717573" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718318" ref_strand="+" ref_description="SGN-E718318 [FC04BC08]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="737"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718318" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722979" ref_strand="+" ref_description="SGN-E722979 [FC18DG09]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="735"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722979" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723356" ref_strand="+" ref_description="SGN-E723356 [FC20BA06]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="752"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723356" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724071" ref_strand="+" ref_description="SGN-E724071 [FC22DH07]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="680" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="698"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724071" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720926" ref_strand="+" ref_description="SGN-E720926 [FC12BA12]">
      <seq>tcggccgaattgctcgcttatgtaaccctatataagccggagaaagagagtcgaagctacagaatttcccttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56899" g_stop="56655" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="678" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="727"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720926" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56899" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGGCCGAAT-TGCTCGCTTATGTAACCCTATATAAGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCCCTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723347" ref_strand="+" ref_description="SGN-E723347 [FC20AH09]">
      <seq>cggccgaattgctcgcttatgtaacccctttaaagccggagaaagagagtcgaagctacagaatttccgctcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56898" g_stop="56655" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="677" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="693"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723347" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56898" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGGCCGAAT-TGCTCGCTTATGTAACCCCTTTAAAGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCCGCTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723662" ref_strand="+" ref_description="SGN-E723662 [FC21BA10]">
      <seq>cggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56898" g_stop="56655" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="677" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="692"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723662" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56898" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718317" ref_strand="+" ref_description="SGN-E718317 [FC04BC07]">
      <seq>aatcggccgaattatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57181" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56892" g_stop="56655" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="672" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="728"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718317" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56892" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AATCGGCCGAATTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718678" ref_strand="+" ref_description="SGN-E718678 [FC05BG08]">
      <seq>aatcggccgaattcccatggggatccgatgctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgaaattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57196" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56889" g_stop="56655" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="265" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="699" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="734"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718678" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56889" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAAATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725260" ref_strand="+" ref_description="SGN-E725260 [FC26CC07]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcatttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="667" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="690"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725260" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCATTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717491" ref_strand="+" ref_description="SGN-E717491 [FC01BE10]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="667" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="711"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717491" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719474" ref_strand="+" ref_description="SGN-E719474 [FC07DH10]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="667" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="706"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719474" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722126" ref_strand="+" ref_description="SGN-E722126 [FC16BB10]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaccaaaaaaaaaaacccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="667" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="699"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722126" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723919" ref_strand="+" ref_description="SGN-E723919 [FC22BG10]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="667" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="730"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723919" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724431" ref_strand="+" ref_description="SGN-E724431 [FC24AD06]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="667" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="695"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724431" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719001" ref_strand="+" ref_description="SGN-E719001 [FC06BH06]">
      <seq>aatcggccgaattctcgcttatgtaaccctcagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="245" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="679" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="735"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719001" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTCAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717694" ref_strand="+" ref_description="SGN-E717694 [FC02BH06]">
      <seq>gggcgattggcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="261" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="695" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="738"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717694" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722792" ref_strand="+" ref_description="SGN-E722792 [FC18BD07]">
      <seq>aatcggccgaattctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="245" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="679" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="732"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723131" ref_strand="+" ref_description="SGN-E723131 [FC19CA07]">
      <seq>ggggatccgatgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="244" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="678" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="691"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723419" ref_strand="+" ref_description="SGN-E723419 [FC20BG03]">
      <seq>gcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaacaaaaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="252" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="686" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="709"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723419" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717391" ref_strand="+" ref_description="SGN-E717391 [FC01AD03]">
      <seq>agggcgaatggcggccaatcggccgaattgcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57184" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56884" g_stop="56655" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="260" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="694" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="731"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717391" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56884" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722138" ref_strand="+" ref_description="SGN-E722138 [FC16BD01]">
      <seq>aatcggccgaattggcttatgtaaccctcatttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57185" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56883" g_stop="56655" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="243" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="677" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="731"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722138" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56883" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GCTTATGTAACCCTCATTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711556" ref_strand="+" ref_description="SGN-E711556 [FB02BC11]">
      <seq>ccaataaaaggttcgccggagaaagagagtcgaagctacagactttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggttagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57169" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="656" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711556" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCAATAAAAGGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGACTTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGT-TAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717063" ref_strand="+" ref_description="SGN-E717063 [FB18DC09]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattacgacaaaatcaactgaaacataagaaaatttttccaaaaaaaaaattttcgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="658" r_length="435" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="708"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717063" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713624" ref_strand="+" ref_description="SGN-E713624 [FB09AF05]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagcgccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="657" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="670"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713624" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCGCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736159" ref_strand="+" ref_description="SGN-E736159 [LC04CC12]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="657" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E736159" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736198" ref_strand="+" ref_description="SGN-E736198 [LC04CH08]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="657" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E736198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736893" ref_strand="+" ref_description="SGN-E736893 [LC07CG11]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="657" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E736893" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697601" ref_strand="+" ref_description="SGN-E697601 [FA03CB10]">
      <seq>cgcctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgctgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="654" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="670"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E697601" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCTGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713784" ref_strand="+" ref_description="SGN-E713784 [FB09CF05]">
      <seq>actctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57174" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="654" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713784" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>ACTCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717540" ref_strand="+" ref_description="SGN-E717540 [FC02AB08]">
      <seq>aatcggccgaattgaccctaagttcgccggacaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57185" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="234" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="668" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="720"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717540" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGACAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712467" ref_strand="+" ref_description="SGN-E712467 [FB04DG06]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712629" ref_strand="+" ref_description="SGN-E712629 [FB05BE07]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannccccgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="695"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712629" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714062" ref_strand="+" ref_description="SGN-E714062 [FB10BF08]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="672"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714062" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714269" ref_strand="+" ref_description="SGN-E714269 [FB10DH07]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="666"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714269" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715817" ref_strand="+" ref_description="SGN-E715817 [FB15BD08]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715817" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716459" ref_strand="+" ref_description="SGN-E716459 [FB17AD12]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattngacacncntccagcgaattaataaatatctaaaaattttgggggggggggcgggaaccccttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="652" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716459" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304911" ref_strand="+" ref_description="SGN-E304911 [cLEX-10-M22]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaagcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattaggatcttttattcatgccaatgaaataattataggattagtggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="651" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="666"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304911" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGGATCTTTTATTCATGCCAATGAAATAATTATAGGATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716643" ref_strand="+" ref_description="SGN-E716643 [FB17CE12]">
      <seq>ctatgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="651" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716643" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTATGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711653" ref_strand="+" ref_description="SGN-E711653 [FB02CD06]">
      <seq>ccgttaggcggagaaagagagtcgaagctacagaatttcagtccgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56869" g_stop="56655" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="649" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711653" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56869" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCGTTAGGCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTCCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734844" ref_strand="+" ref_description="SGN-E734844 [LB13DA03]">
      <seq>cgctttgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56869" g_stop="56655" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="649" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E734844" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56869" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGCTTTGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711790" ref_strand="+" ref_description="SGN-E711790 [FB03AA04]">
      <seq>cgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="648" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711790" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716008" ref_strand="+" ref_description="SGN-E716008 [FB15DE05]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcggtcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtcatccgactccgttactgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcaggttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcagaaaagtggagaggaatcggtgaagacttcatgggtgccagatccggttaccgggtactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgagaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttaatgaaggaactgttttatcacaaaaatatagcagagtgaaatttactcgtgctttggtgcttgtaaattttaagcttattgtgatatctttcgtttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="648" r_length="434" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="663"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716008" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTC-TCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGGTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCATCCGACTCCGTTACTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGGTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAGAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCGGTTACCGGGTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAGAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAATGAAGGAACTGTTTTATCACAAAAATATAGCAGAGTGAAATTTACTCGTGCTTTGGTGCTTGTAAATTTTAAGCTTATTGTGATATCTTTCGTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711991" ref_strand="+" ref_description="SGN-E711991 [FB03CD02]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctggttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="648" r_length="435" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="661"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711991" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTGGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714280" ref_strand="+" ref_description="SGN-E714280 [FB11AA07]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="663"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714280" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714533" ref_strand="+" ref_description="SGN-E714533 [FB11CH05]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="660"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714533" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715493" ref_strand="+" ref_description="SGN-E715493 [FB14BG08]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="664"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715493" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715652" ref_strand="+" ref_description="SGN-E715652 [FB14DF01]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="662"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715652" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716639" ref_strand="+" ref_description="SGN-E716639 [FB17CE08]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716639" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716911" ref_strand="+" ref_description="SGN-E716911 [FB18BF01]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716911" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733175" ref_strand="+" ref_description="SGN-E733175 [LB04AF12]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="647" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="662"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733175" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248052" ref_strand="+" ref_description="SGN-E248052 [cLEF-47-D7]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="645" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E248052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722833" ref_strand="+" ref_description="SGN-E722833 [FC18BH07]">
      <seq>cgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57164" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="644" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="705"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722833" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732501" ref_strand="+" ref_description="SGN-E732501 [LB02BD06]">
      <seq>cggataaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="641" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="655"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E732501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGGATAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733254" ref_strand="+" ref_description="SGN-E733254 [LB04BE10]">
      <seq>ccgagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57162" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="641" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="654"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733254" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CCGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733235" ref_strand="+" ref_description="SGN-E733235 [LB04BD03]">
      <seq>cgataaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="640" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="663"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733235" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGATAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712952" ref_strand="+" ref_description="SGN-E712952 [FB06BB11]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="640" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="657"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712952" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734316" ref_strand="+" ref_description="SGN-E734316 [LB12BD07]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="640" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="660"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E734316" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711029" ref_strand="+" ref_description="SGN-E711029 [FA57CH11]">
      <seq>gataaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattacaaaaaaaaaaacaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="639" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="655"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711029" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GATAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712751" ref_strand="+" ref_description="SGN-E712751 [FB05CH08]">
      <seq>gagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="639" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="699"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712751" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716726" ref_strand="+" ref_description="SGN-E716726 [FB17DE01]">
      <seq>gagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="639" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="655"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716726" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716939" ref_strand="+" ref_description="SGN-E716939 [FB18BH07]">
      <seq>gagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="639" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="652"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713872" ref_strand="+" ref_description="SGN-E713872 [FB09DF02]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="636" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="649"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713872" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732094" ref_strand="+" ref_description="SGN-E732094 [LB01BA10]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="636" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="675"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E732094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730606" ref_strand="+" ref_description="SGN-E730606 [LA24CE11]">
      <seq>cgatgtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57151" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56854" g_stop="56655" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="633" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E730606" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56854" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGAT-GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712272" ref_strand="+" ref_description="SGN-E712272 [FB04BE12]">
      <seq>agagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57154" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56854" g_stop="56655" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="634" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="650"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712272" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56854" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717040" ref_strand="+" ref_description="SGN-E717040 [FB18DA10]">
      <seq>agagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57154" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56854" g_stop="56655" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="634" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="651"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717040" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56854" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>AGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714116" ref_strand="+" ref_description="SGN-E714116 [FB10CC06]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="629" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="647"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E714116" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715900" ref_strand="+" ref_description="SGN-E715900 [FB15CD01]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="629" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="645"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715900" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715964" ref_strand="+" ref_description="SGN-E715964 [FB15DA06]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="629" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="648"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715964" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716138" ref_strand="+" ref_description="SGN-E716138 [FB16AH06]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="629" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="645"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733605" ref_strand="+" ref_description="SGN-E733605 [LB10BH03]">
      <seq>gtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57149" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56849" g_stop="56655" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="629" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="642"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733605" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56849" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>GTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715374" ref_strand="+" ref_description="SGN-E715374 [FB14AD07]">
      <seq>tcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57148" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56848" g_stop="56655" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="628" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="646"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715374" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56848" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716904" ref_strand="+" ref_description="SGN-E716904 [FB18BE06]">
      <seq>tcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57148" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56848" g_stop="56655" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="628" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="646"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716904" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56848" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306240" ref_strand="+" ref_description="SGN-E306240 [cLEY-13-D16]">
      <seq>tcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57148" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56848" g_stop="56655" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="628" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="642"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E306240" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56848" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713951" ref_strand="+" ref_description="SGN-E713951 [FB10AE01]">
      <seq>cttgttccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57064" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56764" g_stop="56655" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="544" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="558"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56764" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTTGTTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715792" ref_strand="+" ref_description="SGN-E715792 [FB15BB06]">
      <seq>ctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57060" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56760" g_stop="56655" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="540" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="557"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715792" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56760" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712417" ref_strand="+" ref_description="SGN-E712417 [FB04DB12]">
      <seq>ctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattanaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57047" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56747" g_stop="56655" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="527" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="561"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712417" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56747" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716807" ref_strand="+" ref_description="SGN-E716807 [FB18AD03]">
      <seq>ctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56996" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56696" g_stop="56655" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55763" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="476" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="497"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716807" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56696" e_stop="56655"/>
          <exon e_start="56196" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712640" ref_strand="+" ref_description="SGN-E712640 [FB05BF06]">
      <seq>cggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56482" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56182" g_stop="55763" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="438"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712640" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56182" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>CGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713238" ref_strand="+" ref_description="SGN-E713238 [FB08AD07]">
      <seq>acatggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagtattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56475" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56175" g_stop="55763" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="434"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713238" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56175" e_stop="55763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</genome_strand>
        <mrna_strand>ACATGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711412" ref_strand="+" ref_description="SGN-E711412 [FB01DG07]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaaggttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55764" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="646" r_length="433" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711412" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAG</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGGTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725000" ref_strand="+" ref_description="SGN-E725000 [FC25DB05]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtnttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="678" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="726"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725000" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTNTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718493" ref_strand="+" ref_description="SGN-E718493 [FC04DD03]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="678" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="740"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718493" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724054" ref_strand="+" ref_description="SGN-E724054 [FC22DF11]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="678" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="714"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724054" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724732" ref_strand="+" ref_description="SGN-E724732 [FC25AA09]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="678" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="733"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724732" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723361" ref_strand="+" ref_description="SGN-E723361 [FC20BA11]">
      <seq>tcggccgaattgctcgcttatgtaacccctttaaggccggagaaagagagtcgaagctacagaatttcacttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56899" g_stop="56655" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="676" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="726"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723361" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56899" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCGGCCGAAT-TGCTCGCTTATGTAACCCCTTTAAGGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCACTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719647" ref_strand="+" ref_description="SGN-E719647 [FC08BH08]">
      <seq>gctcgcttatgtaaccctattttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatggtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="665" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="730"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719647" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTATTTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718521" ref_strand="+" ref_description="SGN-E718521 [FC04DF08]">
      <seq>gctcgcttatgtaaccctattttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="665" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="675"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718521" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTATTTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718741" ref_strand="+" ref_description="SGN-E718741 [FC05CF07]">
      <seq>ccatggggatccgatgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="248" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="680" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="722"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718741" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720248" ref_strand="+" ref_description="SGN-E720248 [FC10BA06]">
      <seq>cggccaaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="252" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="684" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="723"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723644" ref_strand="+" ref_description="SGN-E723644 [FC21AH02]">
      <seq>cccatggggatccgacgttagattatgtaaccctaagttcgccggagaaagagagtccaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57185" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56881" g_stop="56655" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="249" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="681" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="728"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723644" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56881" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCCAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713261" ref_strand="+" ref_description="SGN-E713261 [FB08AF08]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtannaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="655" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713261" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712150" ref_strand="+" ref_description="SGN-E712150 [FB04AB11]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggctggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="655" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="666"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712150" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCTGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713273" ref_strand="+" ref_description="SGN-E713273 [FB08AG09]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattannanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="655" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713273" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715874" ref_strand="+" ref_description="SGN-E715874 [FB15CA09]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="655" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="669"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715874" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717028" ref_strand="+" ref_description="SGN-E717028 [FB18CH09]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattannnnaaaaaaaaaaaaaaaaaaaaacctggggggggggccgggaacccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="650" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717028" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712804" ref_strand="+" ref_description="SGN-E712804 [FB05DE03]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="649" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712804" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717013" ref_strand="+" ref_description="SGN-E717013 [FB18CG06]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanccttgggggggggggggggacccaattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="649" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="684"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717013" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247679" ref_strand="+" ref_description="SGN-E247679 [cLEF-42-K3]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="649" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247679" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247504" ref_strand="+" ref_description="SGN-E247504 [cLEF-42-I19]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="649" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698084" ref_strand="+" ref_description="SGN-E698084 [FA05AH02]">
      <seq>cgttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaacatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="646" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="662"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E698084" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAACATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712126" ref_strand="+" ref_description="SGN-E712126 [FB03DH08]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaagtaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="645" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="661"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712126" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGTAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271593" ref_strand="+" ref_description="SGN-E271593 [cLEM-23-P9]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagaatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="644" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E271593" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGAATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245018" ref_strand="+" ref_description="SGN-E245018 [cLEF-2-L6]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaagaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgggatatctttcttttattagtatcttttattcatgcaaatgaaataattatggtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="643" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245018" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAAGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGGATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247426" ref_strand="+" ref_description="SGN-E247426 [cLEF-46-L24]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="643" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="654"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247426" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711860" ref_strand="+" ref_description="SGN-E711860 [FB03AH01]">
      <seq>cgcgtagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57164" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="641" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="663"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711860" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CG-CGTAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734585" ref_strand="+" ref_description="SGN-E734585 [LB13AC03]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="639" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="649"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E734585" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715231" ref_strand="+" ref_description="SGN-E715231 [FB13CH01]">
      <seq>ggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="638" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="654"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715231" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720972" ref_strand="+" ref_description="SGN-E720972 [FC12BF05]">
      <seq>ggagaaagagagtccaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtatcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="638" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720972" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GGAGAAAGAGAGTCCAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTATCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360083" ref_strand="+" ref_description="SGN-E360083 [cLPP-14-I15]">
      <seq>agaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccgctgtagcaaaaggaggagtgccaaggagcaacgtcatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaagcacagatctggaagcaactgaaaatctttgaagctgcgtcgttgatctccggttactcatcggagatcttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaaatatagcaatgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctctcttttattagtatcttttattcatgcaaatgaaataattatagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57158" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="638" r_length="434" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E360083" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGC-AAA--AGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAG-AAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGCTGTAGCAAAAGGAGGAGTGCCAAGGAGCAACGTCATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAGCACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGTCGTTGATCTCCGGTTACTCATCGGAGATCTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAATATAGCA--ATGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTCTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245714" ref_strand="+" ref_description="SGN-E245714 [cLEF-48-E20]">
      <seq>agaaagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaaacttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57158" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="637" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="647"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245714" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>AGAAAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAACTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734133" ref_strand="+" ref_description="SGN-E734133 [LB11DE03]">
      <seq>gagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctccggggggggggccgggacccctttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57153" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="631" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E734133" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543993" ref_strand="+" ref_description="SGN-E543993 [TUS-66-B14](-)">
      <seq>actccttccgccgcagggttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaggttaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57100" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56800" g_stop="56655" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="578" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E543993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56800" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>ACTCCTTCCGCCGCAGGGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304780" ref_strand="+" ref_description="SGN-E304780 [cLEX-10-C21]">
      <seq>tctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57013" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56713" g_stop="56655" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="491" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="501"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56713" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201474" ref_strand="+" ref_description="SGN-E201474 [cLEC-4-E10]">
      <seq>taactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctcccgttactcatcggagattttcgatcaacgagaaaagagaatttattgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttggtgcttataaattttaagcttatcgttatatctttctttcattagtatcttgtatccatgcaaatgaaataatcatagtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57011" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56711" g_stop="56655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="489" r_length="432" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E201474" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56711" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCCGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTATTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGGTGCTTATAAATTTTAAGCTTATCGTTATATCTTTCTTTCATTAGTATCTTGTATCCATGCAAATGAAATAATCATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203483" ref_strand="+" ref_description="SGN-E203483 [cLEC-15-N15]">
      <seq>taactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaaagctattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57011" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56711" g_stop="56655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="489" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E203483" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56711" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAAGCTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209179" ref_strand="+" ref_description="SGN-E209179 [cLEC-38-N19]">
      <seq>taactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57011" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56711" g_stop="56655" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="489" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="499"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E209179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56711" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551160" ref_strand="-" ref_description="SGN-E551160 [TUS-55-I7]">
      <seq>tccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56977" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56677" g_stop="56655" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="455" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E551160" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551160" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56677" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688960" ref_strand="-" ref_description="SGN-E688960 [t3_tus_55_I07]">
      <seq>tccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56977" stop="55465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56677" g_stop="56655" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55765" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="455" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E688960" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688960" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56677" e_stop="56655"/>
          <exon e_start="56196" e_stop="55765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</genome_strand>
        <mrna_strand>TCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247928" ref_strand="+" ref_description="SGN-E247928 [cLEF-47-B20]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttggccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgccaatgaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55767" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="641" r_length="430" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247928" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTAT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTGGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCCAATGAAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721592" ref_strand="+" ref_description="SGN-E721592 [FC14BG05]">
      <seq>gctcgcttatgtaaccctatgagcgccggagaaagagagtcgaagctacagaatttccgttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagaatcttttattcatgcaaatgaaataattatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55768" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="662" r_length="429" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721592" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTA</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTATGAGCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCCGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGAATCTTTTATTCATGCAAATGAAATAATTATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720093" ref_strand="+" ref_description="SGN-E720093 [FC09DC01]">
      <seq>aatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatngtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="674" r_length="428" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="722"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720093" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATNGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717401" ref_strand="+" ref_description="SGN-E717401 [FC01AE03]">
      <seq>gggcgattggcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatngtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="261" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="689" r_length="428" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="732"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717401" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATNGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717493" ref_strand="+" ref_description="SGN-E717493 [FC01BF02]">
      <seq>ggcgattggcggccaatcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56886" g_stop="56655" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="260" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="688" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="719"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717493" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56886" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711606" ref_strand="+" ref_description="SGN-E711606 [FB02BH04]">
      <seq>cggttaaggggagaaagagagtcgaagctacagaatttcagcccgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanntctgggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56869" g_stop="56655" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="643" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="689"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711606" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56869" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CGGTTAAGGGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGCCCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248085" ref_strand="+" ref_description="SGN-E248085 [cLEF-47-N21]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="631" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E248085" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711788" ref_strand="+" ref_description="SGN-E711788 [FB03AA02]">
      <seq>cattcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57150" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="625" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="635"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711788" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CATTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249540" ref_strand="+" ref_description="SGN-E249540 [cLEF-56-B22]">
      <seq>cgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57147" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56847" g_stop="56655" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="621" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="631"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56847" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370690" ref_strand="+" ref_description="SGN-E370690 [TUS-28-D4](-)">
      <seq>ccgatctcgatatcataataaacaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgatgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaatacttatagtaaaaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57052" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56752" g_stop="56655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55769" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="526" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="547"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E370690" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56752" e_stop="56655"/>
          <exon e_start="56196" e_stop="55769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGT</genome_strand>
        <mrna_strand>CCGATCTCGATATCATAATAAACAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGATGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATACTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303343" ref_strand="+" ref_description="SGN-E303343 [cLEX-2-G2]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55771" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="639" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247681" ref_strand="+" ref_description="SGN-E247681 [cLEF-42-K7]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaataattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57155" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55771" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="627" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716161" ref_strand="+" ref_description="SGN-E716161 [FB16BB06]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55772" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="642" r_length="425" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716161" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTAT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744475" ref_strand="+" ref_description="SGN-E744475 [GI|170506]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55772" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="641" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E744475" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTAT</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360080" ref_strand="+" ref_description="SGN-E360080 [cLPP-14-G15]">
      <seq>agaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccgctgtagcaaaaggaggagtgccaaggagcaacgtcatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaagcacagatctggaagcaactgaaaatctttgaagctgcgtcgttgatctccggttactcatcggagatcttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaaatatagcaatgaaatttactcgtgctttgttgcttttaaattttaagcttattgctatatctctcttttattgagatcttttattcatgcaaatgaaataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57158" stop="55472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55772" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="631" r_length="427" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E360080" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGC-AAA--AGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAG-AAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTAT</genome_strand>
        <mrna_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGCTGTAGCAAAAGGAGGAGTGCCAAGGAGCAACGTCATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAGCACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGTCGTTGATCTCCGGTTACTCATCGGAGATCTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAATATAGCA--ATGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGCTATATCTCTCTTTTATTGAGATCTTTTATTCATGCAAATGAAATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715807" ref_strand="+" ref_description="SGN-E715807 [FB15BC10]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55773" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="641" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715807" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302584" ref_strand="+" ref_description="SGN-E302584 [cLEX-1-O18]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggggaagacttcatgggtgccagatccagttaccggatactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgccatatctttcttttattagcatcttttattcatgcaaatgaaataatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55773" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="631" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E302584" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGGGAAGACTTCATGGGTGCCAGATCCAGTTACCGGATACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGCCATATCTTTCTTTTATTAGCATCTTTTATTCATGCAAATGAAATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711139" ref_strand="+" ref_description="SGN-E711139 [FB01AE05]">
      <seq>ccctttattcgccggagaaagagagtcgaagctacagaatttcctttcgccgctgcggaagctccatagccaaactccttcagccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccacatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaacagagaatttatctgaaggaactgttttatcagaaaaatatagcagcgtgaaatttactcgcgctttgttgcttctaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataattaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57173" stop="55470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56873" g_stop="56655" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55774" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="643" r_length="424" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711139" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56873" e_stop="56655"/>
          <exon e_start="56196" e_stop="55774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTA-GTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATT</genome_strand>
        <mrna_strand>CCCTTTATTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCCTTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCAGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCACATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAACAGAGAATTTATCTGAAGGAACTGTTTTATCAGAAAAATATAGCAGCGTGAAATTTACTCGCGCTTTGTTGCTTCTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720775" ref_strand="+" ref_description="SGN-E720775 [FC11DC07]">
      <seq>aatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcaaaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57136" stop="55474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56836" g_stop="56655" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55774" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="605" r_length="423" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720775" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56836" e_stop="56655"/>
          <exon e_start="56196" e_stop="55774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATT</genome_strand>
        <mrna_strand>AATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAAAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308515" ref_strand="+" ref_description="SGN-E308515 [cLEY-21-H21]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55777" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="627" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E308515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303877" ref_strand="+" ref_description="SGN-E303877 [cLEX-4-K3]">
      <seq>agagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttggatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatgcaaatgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57152" stop="55477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56852" g_stop="56655" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55777" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="619" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56852" e_stop="56655"/>
          <exon e_start="56196" e_stop="55777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTT-GATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</genome_strand>
        <mrna_strand>AGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717036" ref_strand="+" ref_description="SGN-E717036 [FB18DA05]">
      <seq>ccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57052" stop="55476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56752" g_stop="56655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55777" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="518" r_length="420" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717036" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56752" e_stop="56655"/>
          <exon e_start="56196" e_stop="55777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATA</genome_strand>
        <mrna_strand>CCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236124" ref_strand="+" ref_description="SGN-E236124 [cLED-16-K10]">
      <seq>tgcagtggcatcactaggtgcagtttccggtgtatcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctacggttactcatcggagattttcgatcaacgagaaaagagaatttattgaaggaactgttttatcagaaaaatatagcagcgtgaaatttactcgtgctttgctgcttttaaatcttaagcttattgttatatctttcttttattagtatcttttattcatgcgaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56487" stop="55478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56187" g_stop="55778" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E236124" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56187" e_stop="55778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAAT</genome_strand>
        <mrna_strand>TGCAGTGGCATCACTAGGTGCAGTTTCCGGTGTATCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTACGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTATTGAAGGAACTGTTTTATCAGAAAAATATAGCAGCGTGAAATTTACTCGTGCTTTGCTGCTTTTAAATCTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCGAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720906" ref_strand="+" ref_description="SGN-E720906 [FC12AH02]">
      <seq>aatcggccgaattgctcgcttatgtaaccccattttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcntgcnnaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55780" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="663" r_length="417" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="698"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E720906" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTAACCCCATTTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCNTGCNNAANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717795" ref_strand="+" ref_description="SGN-E717795 [FC02DA11]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55780" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="626" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="692"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E717795" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAA</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719210" ref_strand="+" ref_description="SGN-E719210 [FC07AD10]">
      <seq>atagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatgcaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57108" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56808" g_stop="56655" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55780" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="571" r_length="417" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719210" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56808" e_stop="56655"/>
          <exon e_start="56196" e_stop="55780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAA</genome_strand>
        <mrna_strand>ATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAAANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715386" ref_strand="+" ref_description="SGN-E715386 [FB14AE08]">
      <seq>tcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57081" stop="55490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56781" g_stop="56655" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55781" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="543" r_length="416" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715386" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56781" e_stop="56655"/>
          <exon e_start="56196" e_stop="55781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGA</genome_strand>
        <mrna_strand>TCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306482" ref_strand="+" ref_description="SGN-E306482 [cLEX-13-A10]">
      <seq>aagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57169" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56869" g_stop="56655" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55788" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="624" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E306482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56869" e_stop="56655"/>
          <exon e_start="56196" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</genome_strand>
        <mrna_strand>AAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246493" ref_strand="+" ref_description="SGN-E246493 [cLEF-45-A23]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgccaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57155" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55788" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="611" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246493" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATG-CAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245224" ref_strand="+" ref_description="SGN-E245224 [cLEF-44-B1]">
      <seq>gagagtcgaagctacagaatttcagttcgcccctggggaagcgccatatccaaactccttccgccgcancgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtatcttttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57153" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55788" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="608" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245224" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCCCTGGGGAAGCGCCATATCCAAACTCCTTCCGCCGCANCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247582" ref_strand="+" ref_description="SGN-E247582 [cLEF-42-H23]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagaatcttttattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55789" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="611" r_length="408" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247582" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGAATCTTTTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247976" ref_strand="+" ref_description="SGN-E247976 [cLEF-47-C11]">
      <seq>gagagtcgaagctacagaatttcagttcgccgctgcggaagctccgtagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57153" stop="55489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55789" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="607" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247976" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAT</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCGTAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247163" ref_strand="+" ref_description="SGN-E247163 [cLEF-46-J5]">
      <seq>agctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57144" stop="55489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56844" g_stop="56655" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55789" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="598" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56844" e_stop="56655"/>
          <exon e_start="56196" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCAT</genome_strand>
        <mrna_strand>AGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246762" ref_strand="+" ref_description="SGN-E246762 [cLEF-45-F12]">
      <seq>gaactagttctctctaagttcgccggagaaagagagtcgaagcgtggagaatttcagttcgcgcgctgcggaagctccatagccaaactgcttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgggctttgttgcttttaaattttaagcttattggtatatctttcttttattagtatcttttattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57180" stop="55490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="232" r_length="220" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55790" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="639" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246762" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="55790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGC-TACAGAATTTCAGTTCGC-CGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCA</genome_strand>
        <mrna_strand>TCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCGTGGAGAATTTCAGTTCGCGCGCTGCGGAAGCTCCATAGCCAAACTGCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGGGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTAGTATCTTTTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711308" ref_strand="+" ref_description="SGN-E711308 [FB01CF02]">
      <seq>cgccttagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctcgactccgatctcgatatcataataagcaatggctcgttcttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaccgagaaaagagaatttagtgaaggaactgttttatcacaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattaaaagcttattgttatatctttcttttattaagatcttttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55791" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="624" r_length="406" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711308" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTC</genome_strand>
        <mrna_strand>CGCCTTAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCT-CGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTC-TTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCACCGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCACAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTAAAAGCTTATTGTTATATCTTTCTTTTATTAAGATCTTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211265" ref_strand="+" ref_description="SGN-E211265 [cLEC-70-C12]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaagggactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaatttaagcttattggtatatctttcttttattagnatcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55792" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="615" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E211265" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGGACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAA-TTTAAGCTTATTGGTATATCTTTCTTTTATTAGNATCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391991" ref_strand="+" ref_description="SGN-E391991 [TUS-34-C3]">
      <seq>cgcctgagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggttatatctttcttttattagaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57164" stop="55495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56864" g_stop="56655" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55795" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="612" r_length="402" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E391991" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56864" e_stop="56655"/>
          <exon e_start="56196" e_stop="55795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATT-GTTATATCTTTCTTTTATTAGTATCTTTT</genome_strand>
        <mrna_strand>CGCCTGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAG-AAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTTATATCTTTCTTTTATTAGAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723476" ref_strand="+" ref_description="SGN-E723476 [FC20CD12]">
      <seq>agctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgccccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcaaaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattaatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57114" stop="55497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56814" g_stop="56655" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55797" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="560" r_length="400" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723476" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56814" e_stop="56655"/>
          <exon e_start="56196" e_stop="55797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTT</genome_strand>
        <mrna_strand>AGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCCCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAAAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724480" ref_strand="+" ref_description="SGN-E724480 [FC24AH11]">
      <seq>aatcggccgaattgctcgcttatgtacccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56901" g_stop="56655" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="639" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="683"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724480" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56901" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGCTCGCTTATGTACCCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715606" ref_strand="+" ref_description="SGN-E715606 [FB14DA11]">
      <seq>gtaaccctaagttcgccggagagagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccggtgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="616" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="626"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715606" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAGAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGGTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715638" ref_strand="+" ref_description="SGN-E715638 [FB14DD10]">
      <seq>gtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttctttaaaaaannaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57177" stop="55507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56877" g_stop="56655" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="616" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="639"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715638" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56877" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>GTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712731" ref_strand="+" ref_description="SGN-E712731 [FB05CF10]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttnnnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="606" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="623"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E712731" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716305" ref_strand="+" ref_description="SGN-E716305 [FB16CG04]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatatctttcttttattannnnnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="606" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="628"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E716305" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725227" ref_strand="+" ref_description="SGN-E725227 [FC26BH03]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgcttttttgcttttaaattttaagcttattgttatatctttcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="595" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="646"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725227" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTTTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245977" ref_strand="+" ref_description="SGN-E245977 [cLEF-51-O10]">
      <seq>aagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaanttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57033" stop="55504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56733" g_stop="56655" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55804" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="472" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245977" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56733" e_stop="56655"/>
          <exon e_start="56196" e_stop="55804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTA</genome_strand>
        <mrna_strand>AAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAANTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245701" ref_strand="+" ref_description="SGN-E245701 [cLEF-48-A20]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55807" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="604" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245701" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATC---ATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270743" ref_strand="+" ref_description="SGN-E270743 [cLEM-6-D20]">
      <seq>aaagagagtcgaagctacagaatttcagttcggcgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatataacagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattggtatatctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55809" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="590" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E270743" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGGCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAACAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGGTATATCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725114" ref_strand="+" ref_description="SGN-E725114 [FC26AD12]">
      <seq>aatcggccgaattgctcctcgcttatgcaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttatnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57193" stop="55519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56903" g_stop="56655" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55821" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="625" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="664"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E725114" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56903" e_stop="56655"/>
          <exon e_start="56196" e_stop="55821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCCTCGCTTATGCAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718034" ref_strand="+" ref_description="SGN-E718034 [FC03BH04]">
      <seq>tcggccgaattgctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57188" stop="55518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56899" g_stop="56655" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55821" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="620" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718034" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56899" e_stop="56655"/>
          <exon e_start="56196" e_stop="55821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</genome_strand>
        <mrna_strand>TCGGCCGAAT-TGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713147" ref_strand="+" ref_description="SGN-E713147 [FB06DD08]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccctccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55821" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="585" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="600"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E713147" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCCTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281688" ref_strand="+" ref_description="SGN-E281688 [cLER-14-P21]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagcttattgttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55821" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="585" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="600"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E281688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723959" ref_strand="+" ref_description="SGN-E723959 [FC22CD08]">
      <seq>ggagaaagagactcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgaaattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgcttttaaattttaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57160" stop="55528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56860" g_stop="56655" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55828" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="575" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723959" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56860" e_stop="56655"/>
          <exon e_start="56196" e_stop="55828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCT</genome_strand>
        <mrna_strand>GGAGAAAGAGACTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAAATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711822" ref_strand="+" ref_description="SGN-E711822 [FB03AD04]">
      <seq>aaagagagtcgaagctacagaatttcagttccccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcttgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatataccagtgtgaaatttactcgtgctttgttgcttttaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55835" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="564" r_length="362" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E711822" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCCCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCTTGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATACCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374905" ref_strand="+" ref_description="SGN-E374905 [TUS-15-A17]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgctttgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55842" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="572" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E374905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721581" ref_strand="+" ref_description="SGN-E721581 [FC14BE10]">
      <seq>aatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgaaattgacgctgctgacctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcttcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcaaaaaaataatagcagtgtgaaatttactcgtgctttgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57136" stop="55542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56836" g_stop="56655" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55842" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="538" r_length="356" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E721581" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56836" e_stop="56655"/>
          <exon e_start="56196" e_stop="55842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAT-ATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTT</genome_strand>
        <mrna_strand>AATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAAATTGACGCTGCTGACCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCTTCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAAAAAAATAATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276413" ref_strand="+" ref_description="SGN-E276413 [cLEN-17-B9]">
      <seq>accctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57174" stop="55551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55851" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="566" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E276413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</genome_strand>
        <mrna_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308396" ref_strand="+" ref_description="SGN-E308396 [cLEY-25-E21]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55851" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="558" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E308396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245819" ref_strand="+" ref_description="SGN-E245819 [cLEF-48-K14]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55851" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="557" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296389" ref_strand="-" ref_description="SGN-E296389 [cLET-19-L13](-)">
      <seq>taaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57176" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55854" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="565" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E296389" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296389" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</genome_strand>
        <mrna_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296530" ref_strand="+" ref_description="SGN-E296530 [cLET-19-L13]">
      <seq>taaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57176" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55854" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="565" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E296530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</genome_strand>
        <mrna_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303800" ref_strand="+" ref_description="SGN-E303800 [cLEX-4-O24]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactcgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55854" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="559" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="572"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311604" ref_strand="+" ref_description="SGN-E311604 [cLEZ-9-G21]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagcagtgtgaaatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55856" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="553" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E311604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTC</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200369" ref_strand="+" ref_description="SGN-E200369 [cLEC-1-A21]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgcccgtgaatctcggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaagaactgttttatcagaaaaatatagcagtgtgaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57155" stop="55559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55859" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="539" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E200369" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCG-CCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTA</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCCGTGAATCT-CGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAAGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305844" ref_strand="+" ref_description="SGN-E305844 [cLEX-14-F10]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactggtttatcagaaaaatatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55871" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="543" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E305844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGGTTTATCAGAAAAATATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294074" ref_strand="+" ref_description="SGN-E294074 [cLET-13-O5]">
      <seq>tgaccctaagttcgccggagaaagagagtcttagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgacaatctttgaagctgcgccgctgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57176" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55872" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="547" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E294074" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</genome_strand>
        <mrna_strand>TGACCCTAAGTTCGCCGGAGAAAGAGAGTCTTAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGACAATCTTTGAAGCTGCGCCGCTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304209" ref_strand="+" ref_description="SGN-E304209 [cLEX-6-O23]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaaattagtgaagggactgttttatcagaaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55872" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="539" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304209" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGC-AAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAAATTAGTGAAGGGACTGTTTTATCAGAAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247176" ref_strand="+" ref_description="SGN-E247176 [cLEF-46-D14]">
      <seq>tcgccggataaagagagtcgaagctacagaagggcagttggccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55872" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="536" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247176" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</genome_strand>
        <mrna_strand>TCGCCGGATAAAGAGAGTCGAAGCTACAGAAGGGCAGTTGGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246773" ref_strand="+" ref_description="SGN-E246773 [cLEF-45-J18]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="535" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303905" ref_strand="+" ref_description="SGN-E303905 [cLEX-4-C18]">
      <seq>gaggagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggaccaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57154" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="530" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303905" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGA-CAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>GAG-GAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACCAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248954" ref_strand="+" ref_description="SGN-E248954 [cLEF-49-H8]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="527" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E248954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245301" ref_strand="+" ref_description="SGN-E245301 [cLEF-44-B13]">
      <seq>gagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57153" stop="55573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55873" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="523" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="55873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245327" ref_strand="+" ref_description="SGN-E245327 [cLEF-44-B4]">
      <seq>gagtcgaagctacagaatttcagttctccgctgcgggggcgcgatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttactgaaggaactgttttatcagaaaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57151" stop="55574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55874" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="520" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245327" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATA</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCTCCGCTGCGGGGGCGCGATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTACTGAAGGAACTGTTTTATCAGAAAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249386" ref_strand="+" ref_description="SGN-E249386 [cLEF-50-D9]">
      <seq>gaggttcgccggagaaagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagaatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagaaaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57169" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="541" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249386" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAG-ACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAG-ATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GAGGTTCGCCGGAGAAAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGAATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAAAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312650" ref_strand="+" ref_description="SGN-E312650 [cLEZ-20-F24]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="535" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E312650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271534" ref_strand="+" ref_description="SGN-E271534 [cLEM-23-C22]">
      <seq>ttcgcccgagaaagagagtcgaagctacagaatttcagttcgcccgctgcggaagctccatagcccaacctccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaacctctaagacctctctctgctttcgtctcccacctccgtttctgcttttctcagcaggcgtggatatgccagcggcatcacaaggtgccagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggaccagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="541" r_length="324" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E271534" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCG-CCGCTGCGGAAGCTCCATAG-CCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAA-CTCTAAGA-CTCTCTCTGCTTTCGTCTCCGA-CTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATG-CAGCGGCATCACAAGGTG-CAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>TTCGCCCGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCCGCTGCGGAAGCTCCATAGCCCAACCTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACCTCTAAGACCTCTCTCTGCTTTCGTCTCCCACCTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCCAGCGGCATCACAAGGTGCCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACCAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279698" ref_strand="+" ref_description="SGN-E279698 [cLER-5-H5]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctgctttcgtgtccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcaggttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagataccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="533" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E279698" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTGTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGGTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGATACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249222" ref_strand="+" ref_description="SGN-E249222 [cLEF-50-B19]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagaactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="526" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAG-ACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGAACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245272" ref_strand="+" ref_description="SGN-E245272 [cLEF-44-B14]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagcgccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57151" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55875" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="519" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCGCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246914" ref_strand="+" ref_description="SGN-E246914 [cLEF-41-B24]">
      <seq>agaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttaatgaaggaactgttttatcagaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57158" stop="55576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55876" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="525" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATA</genome_strand>
        <mrna_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAATGAAGGAACTGTTTTATCAGAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247331" ref_strand="+" ref_description="SGN-E247331 [cLEF-46-B18]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgttttatcagaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57151" stop="55577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55877" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="517" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAT</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719459" ref_strand="+" ref_description="SGN-E719459 [FC07DG05]">
      <seq>gctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagcgtacagaatttcagttcgccgctgcggaagctccataggcgaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtancaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgaaattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcgggtgaaaatctttgaagctgcgccgttgatctgcggggaatcatccgagattttccagcggggagaaaaaagaatttagtgaaggaacatgttttatcagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57186" stop="55578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56887" g_stop="56655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55878" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="554" r_length="320" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E719459" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56887" e_stop="56655"/>
          <exon e_start="56196" e_stop="55878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGC-TACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAAC-TGTTTTATCAGAAAAA</genome_strand>
        <mrna_strand>GCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCGTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGGCGAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTANCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAAATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCGGGTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGGGAATCATCCGAGATTTTCCAGCGGGGAGAAAAAAGAATTTAGTGAAGGAACATGTTTTATCAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723480" ref_strand="+" ref_description="SGN-E723480 [FC20CE06]">
      <seq>ccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaatcatcggagattttcgatcaacgagaaaagaaaatttagtgaaggaactgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57162" stop="55588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56862" g_stop="56655" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55888" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="517" r_length="309" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723480" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56862" e_stop="56655"/>
          <exon e_start="56196" e_stop="55888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTT</genome_strand>
        <mrna_strand>CCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAATCATCGGAGATTTTCGATCAACGAGAAAAGAAAATTTAGTGAAGGAACTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244373" ref_strand="+" ref_description="SGN-E244373 [cLEF-3-I12]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccggttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcaggttccggtgtatcagaaggagggccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggagaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagtgaaggaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55891" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="517" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244373" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGGTTCCGGTGTATCAGAAGGAGGGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGAGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244320" ref_strand="+" ref_description="SGN-E244320 [cLEF-37-M21]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="512" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237667" ref_strand="+" ref_description="SGN-E237667 [cLED-19-I12]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="511" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E237667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294601" ref_strand="+" ref_description="SGN-E294601 [cLET-22-N1]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="504" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E294601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304564" ref_strand="+" ref_description="SGN-E304564 [cLEX-11-F23]">
      <seq>gagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57159" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56859" g_stop="56655" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="500" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56859" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>GAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303228" ref_strand="+" ref_description="SGN-E303228 [cLEX-5-K17]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgntgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="498" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303228" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGNTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279885" ref_strand="+" ref_description="SGN-E279885 [cLER-8-I3]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgcccgtgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="497" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E279885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCCGTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281949" ref_strand="+" ref_description="SGN-E281949 [cLES-2-N4]">
      <seq>tcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57148" stop="55602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56848" g_stop="56655" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55902" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="489" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E281949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56848" e_stop="56655"/>
          <exon e_start="56196" e_stop="55902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</genome_strand>
        <mrna_strand>TCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201665" ref_strand="+" ref_description="SGN-E201665 [cLEC-11-D4]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55903" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="511" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E201665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAG</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247037" ref_strand="+" ref_description="SGN-E247037 [cLEF-41-D1]">
      <seq>aaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctttttgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgctccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57175" stop="55605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56875" g_stop="56655" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55905" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="513" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247037" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56875" e_stop="56655"/>
          <exon e_start="56196" e_stop="55905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTT</genome_strand>
        <mrna_strand>AACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTTTTTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCTCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276508" ref_strand="+" ref_description="SGN-E276508 [cLEN-17-G9]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttccttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgcttttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55908" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="492" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E276508" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAA</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCCTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTTTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246408" ref_strand="+" ref_description="SGN-E246408 [cLEF-52-A20]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgntgatctccggttactcatcggagantttcgatcaacgagaaaagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57151" stop="55608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55908" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="486" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E246408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAA</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGNTGATCTCCGGTTACTCATCGGAGANTTTCGATCAACGAGAAAAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247558" ref_strand="+" ref_description="SGN-E247558 [cLEF-42-O8]">
      <seq>ctaagttcgccggagaaagagagtcgaagctccagaatttcagttcgccgctgcggaagcctccatagcccaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgagaaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55909" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="506" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247558" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAG-CTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTCCAGAATTTCAGTTCGCCGCTGCGGAAGCCTCCATAGCCCAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247851" ref_strand="+" ref_description="SGN-E247851 [cLEF-47-M21]">
      <seq>accctaagttcgccggagaaagagagtcgaagctgcagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctcccggtactcatncgagattttcgatcaacgagaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57174" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56874" g_stop="56655" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55910" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="507" r_length="287" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56874" e_stop="56655"/>
          <exon e_start="56196" e_stop="55910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAG</genome_strand>
        <mrna_strand>ACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTGCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCCGGTACTCATNCGAGATTTTCGATCAACGAGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304198" ref_strand="+" ref_description="SGN-E304198 [cLEX-6-M23]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcggctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagcgccaaggagcaacgtgatgatgcaaaagaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttactcatcggagattttcgatcaacgagaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55910" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="501" r_length="288" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304198" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="55910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAA-AAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAG</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGGCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGCGCCAAGGAGCAACGTGATGATGCAAAAGAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208430" ref_strand="+" ref_description="SGN-E208430 [cLEC-37-P21]">
      <seq>aagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatgggagattttcgatcaacgagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57155" stop="55612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56655" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55912" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="486" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E208430" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56655"/>
          <exon e_start="56196" e_stop="55912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAG</genome_strand>
        <mrna_strand>AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATGGGAGATTTTCGATCAACGAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208983" ref_strand="+" ref_description="SGN-E208983 [cLEC-38-I20]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcacaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccagaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatcaacgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55916" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="497" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E208983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="55916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGA</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCACAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCAGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248242" ref_strand="+" ref_description="SGN-E248242 [cLEF-55-I21]">
      <seq>gagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57151" stop="55623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56851" g_stop="56655" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55923" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="471" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E248242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56851" e_stop="56655"/>
          <exon e_start="56196" e_stop="55923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATC</genome_strand>
        <mrna_strand>GAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304484" ref_strand="+" ref_description="SGN-E304484 [cLEX-12-N10]">
      <seq>ctaagttcgccggataaagagagtcgaagctacagaatttcagatcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagattccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgagaatctttgaagctgcgccgttgatctccggttactcatcggagattttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55924" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="490" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304484" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="55924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGAT</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGATAAAGAGAGTCGAAGCTACAGAATTTCAGATCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGATTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAGAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243091" ref_strand="+" ref_description="SGN-E243091 [cLEF-15-I5]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcacgcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcacaaaagtggacaggaatcggtgaagacttcatgggtgccagatccaggtaccggctactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgtggatctccggggactcatcggagatggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55926" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="478" r_length="271" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E243091" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="55926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCG</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCACAAAAGTGGACAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGGTACCGGCTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTGGATCTCCGGGGACTCATCGGAGATGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335171" ref_strand="+" ref_description="SGN-E335171 [cTOE-1-L5]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaaagatgctgtgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctccggttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55940" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="469" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E335171" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGG-AAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTC</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAAGATGCTG-TGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244980" ref_strand="+" ref_description="SGN-E244980 [cLEF-2-H15]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgcatgtgaaacacagatctggaagccaactgaaaatctttgaagctgcgccgttgatctccggttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55942" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="459" r_length="256" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244980" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="55942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAG-CAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTAC</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCATGTGAAACACAGATCTGGAAGCCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723007" ref_strand="+" ref_description="SGN-E723007 [FC19AB09]">
      <seq>aaagagagtcgaagctacagaatttcagcttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgatctgcggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55942" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="458" r_length="255" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723007" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="55942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAG-TTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTAC</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGCTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296185" ref_strand="+" ref_description="SGN-E296185 [cLET-24-A23]">
      <seq>taaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgcgccgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57176" stop="55652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55952" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="467" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E296185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGAT</genome_strand>
        <mrna_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247963" ref_strand="+" ref_description="SGN-E247963 [cLEF-47-N22]">
      <seq>tcgccggagaaagagagtcgaagctgcagaatttcagtgcgccgctgcggaagctccatagccaaactccttccgccgcagcggtcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctacgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagactacggtgtagcaaaaggagtgccacggagcaacgtgatgatgcacaaaagtggagaggaatcggcgaagacttcatgggtgccagatccagtgaccggttactataggccggaaggacaagcaaatgagattgacgctggtgagctccggaagatgctgtggaaacacagatctggaagcaactgaaaatctgtgaagctgcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55958" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="450" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E247963" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCC</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTGCAGAATTTCAGTGCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGGTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTACGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGACTACGGTGTAGCAAAAGGAGTGCCACGGAGCAACGTGATGATGCACAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAGTGACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGGTGAGCTCCGGAAGATGCTGTGGAAACACAGATCTGGAAGCAACTGAAAATCTGTGAAGCTGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367872" ref_strand="+" ref_description="SGN-E367872 [TUS-22-A17]">
      <seq>gccggagaaagagaggcgaagctacagaatctcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggttatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaggcaaatgacattgacgctgctgagctccggaagacgctgttgaaacacagatctggaagcaactgaaaatctttgaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55961" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="445" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E367872" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="55961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGC</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGGCGAAGCTACAGAATCTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGTTATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAGGCAAATGACATTGACGCTGCTGAGCTCCGGAAGACGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248178" ref_strand="+" ref_description="SGN-E248178 [cLEF-55-E20]">
      <seq>ggttcgccggagaaagagagcctaagctacataattctagggcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55963" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="448" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E248178" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</genome_strand>
        <mrna_strand>GGTTCGCCGGAGAAAGAGAGCCTAAGCTACATAATTCTAGGGCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301298" ref_strand="+" ref_description="SGN-E301298 [cLEW-24-J2]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55963" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="446" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E301298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304793" ref_strand="+" ref_description="SGN-E304793 [cLEX-10-A16]">
      <seq>gcctttttccctcctcattctccatctctatatatacttccccattctctcctccatttctcctcgcttatgtaaccctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57248" stop="55668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56948" g_stop="56655" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55968" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="523" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E304793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56948" e_stop="56655"/>
          <exon e_start="56196" e_stop="55968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTG</genome_strand>
        <mrna_strand>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243287" ref_strand="+" ref_description="SGN-E243287 [cLEF-12-P19]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55971" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="437" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E243287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337946" ref_strand="+" ref_description="SGN-E337946 [cTOE-14-A5]">
      <seq>gaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57137" stop="55671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56837" g_stop="56655" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55971" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="409" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E337946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56837" e_stop="56655"/>
          <exon e_start="56196" e_stop="55971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</genome_strand>
        <mrna_strand>GAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295294" ref_strand="+" ref_description="SGN-E295294 [cLET-20-P11]">
      <seq>tcaccctaagttcgccggagaaagagagtctaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccggcgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57176" stop="55672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56876" g_stop="56655" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55972" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="447" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E295294" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56876" e_stop="56655"/>
          <exon e_start="56196" e_stop="55972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATC</genome_strand>
        <mrna_strand>TCACCCTAAGTTCGCCGGAGAAAGAGAGTCTAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGGCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245071" ref_strand="+" ref_description="SGN-E245071 [cLEF-13-B21]">
      <seq>agttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaagcaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57168" stop="55675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56868" g_stop="56655" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55975" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="436" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56868" e_stop="56655"/>
          <exon e_start="56196" e_stop="55975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAA</genome_strand>
        <mrna_strand>AGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301387" ref_strand="+" ref_description="SGN-E301387 [cLEW-24-H18]">
      <seq>ttcgccggagaaagagagtcggggctgcttaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaagcgtggatatgcagcggcatcacaaggtgcagttgccggtgtaccaaaaggagtgcctacgagcaccgtgatgatgcaaaaaagtggagaggaatcggcgaagacttcatgggtgccagatccaattaccggctactataagccggaaagacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55984" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="425" r_length="213" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E301387" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="55984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAG</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGGGGCTGCTTAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTGCCGGTGTACCAAAAGGAGTGCCTACGAGCACCGTGATGATGCAAAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAATTACCGGCTACTATAAGCCGGAAAGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244843" ref_strand="+" ref_description="SGN-E244843 [cLEF-2-G6]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgcgatgatgcaaaaaaggggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55988" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="420" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244843" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTG</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGCGATGATGCAAAAAAGGGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244946" ref_strand="+" ref_description="SGN-E244946 [cLEF-2-A14]">
      <seq>tcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctgttgaaacacacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55988" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="420" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="55988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTG</genome_strand>
        <mrna_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244342" ref_strand="+" ref_description="SGN-E244342 [cLEF-3-G1]">
      <seq>agaaagagagtctaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgttttcgtctccgactccgattctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagcttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcagaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggatactataggccggaaggacaagcaaatgagattgacgctgctgagctgcggaagatgctgttgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57158" stop="55695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56858" g_stop="56655" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="55995" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="406" r_length="202" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244342" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56858" e_stop="56655"/>
          <exon e_start="56196" e_stop="55995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACAC</genome_strand>
        <mrna_strand>AGAAAGAGAGTCTAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGTTTTCGTCTCCGACTCCGATTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGCTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAGAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGATACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTGCGGAAGATGCTGTTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337606" ref_strand="+" ref_description="SGN-E337606 [cTOE-11-L1]">
      <seq>ttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctccggaagatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56004" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="405" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E337606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="56004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTG</genome_strand>
        <mrna_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288181" ref_strand="+" ref_description="SGN-E288181 [cLES-7-P15]">
      <seq>ttcgccggagaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttgcgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccggttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggcgaagacttcatgggtgccagatccagttaccgggtactataagccggaaggacaagcgaatgaattgacgctgtgagctccggagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57166" stop="55705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56866" g_stop="56655" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56005" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="400" r_length="189" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E288181" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56866" e_stop="56655"/>
          <exon e_start="56196" e_stop="56005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCT</genome_strand>
        <mrna_strand>TTCGCCGGAG-AAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTGCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAGTTACCGGGTACTATAAGCCGGAAGGACAAGCGAATGA-ATTGACGCTG-TGAGCTCCGG-AGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396536" ref_strand="+" ref_description="SGN-E396536 [TUS-24-G7]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaaaacttcatgggtgccagatccagttaccggttactataggccgggaagacaagcaaaatgaattgacactgctgagctccggaagaggggggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56010" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="405" r_length="187" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E396536" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="56010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAG</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAAACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGGAAGACAAGCAAAATGAATTGACACTGCTGAGCTCCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370691" ref_strand="+" ref_description="SGN-E370691 [TUS-28-D4]">
      <seq>aaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcttatgagattgacgctgttgagctgcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57156" stop="55710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56010" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="389" r_length="187" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E370691" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="56010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAG</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCTTATGAGATTGACGCTGTTGAGCTGCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244472" ref_strand="+" ref_description="SGN-E244472 [cLEF-3-J1]">
      <seq>aggaattcggcacgaggaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatggtgcaaaaaagtggagaggaatcggcgaagacttcatgggtgccagatccagttaccggttactataggccggaaggacaagcaaatgagattgacgctgctgagctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57169" stop="55715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56856" g_stop="56655" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="219" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56015" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="401" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244472" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56856" e_stop="56655"/>
          <exon e_start="56196" e_stop="56015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCC</genome_strand>
        <mrna_strand>AAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGGTGCAAAAAAGTGGAGAGGAATCGGCGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244911" ref_strand="+" ref_description="SGN-E244911 [cLEF-2-A5]">
      <seq>cggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgggtgccagatccagttaccggttactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57161" stop="55757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56861" g_stop="56655" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56057" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="347" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56861" e_stop="56655"/>
          <exon e_start="56196" e_stop="56057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATA</genome_strand>
        <mrna_strand>CGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303119" ref_strand="+" ref_description="SGN-E303119 [cLEX-5-K23]">
      <seq>cctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaatcggtgaagacttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57172" stop="55785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56872" g_stop="56655" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56085" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="330" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E303119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56872" e_stop="56655"/>
          <exon e_start="56196" e_stop="56085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGG</genome_strand>
        <mrna_strand>CCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362106" ref_strand="+" ref_description="SGN-E362106 [cLPP-11-E6]">
      <seq>ctaagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccgctgtagcaaaaggaggagtgccaaggagcaacgtcatgatgcaaaaaagtggagaggaatcggtgaagacttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56085" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="332" r_length="115" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E362106" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="56085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGC-AAA--AGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGG</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGCTGTAGCAAAAGGAGGAGTGCCAAGGAGCAACGTCATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243096" ref_strand="+" ref_description="SGN-E243096 [cLEF-15-M14]">
      <seq>ctaagttcgccggagaaatagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactcccatctccatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgaagcaaaaggagtgccttggagcaacgtgatgatgccacaaagtggagaggaatcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56096" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="318" r_length="101" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E243096" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="56096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGA</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAATAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCCATCTCCATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGAAGCAAAAGGAGTGCCTTGGAGCAACGTGATGATGCCACAAAGTGGAGAGGAATCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272622" ref_strand="+" ref_description="SGN-E272622 [cLEM-21-P7]">
      <seq>atatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaagcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57043" stop="55802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56743" g_stop="56655" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56102" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="184" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E272622" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56743" e_stop="56655"/>
          <exon e_start="56196" e_stop="56102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAAT</genome_strand>
        <mrna_strand>ATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249099" ref_strand="+" ref_description="SGN-E249099 [cLEF-49-N7]">
      <seq>tcgccggttaaagagagtcgaagctacacaattctagggtgccgctgcggaagctccatagcccaactccttccgccgcagcgttcttattcacaaattctcttgctccgactccgatctcgatatcataataaccaatggcgaattcaagctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcaacaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57165" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56865" g_stop="56655" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="304" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249099" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56865" e_stop="56655"/>
          <exon e_start="56196" e_stop="56104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</genome_strand>
        <mrna_strand>TCGCCGGTTAAAGAGAGTCGAAGCTACACAATTCTAGGGTGCCGCTGCGGAAGCTCCATAGCCCAACTCCTTCCGCCGCAGCGTTCTTATTCACAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAACCAATGGCGAATTCAAGCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245472" ref_strand="+" ref_description="SGN-E245472 [cLEF-43-M9]">
      <seq>gaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57157" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56857" g_stop="56655" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="296" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56857" e_stop="56655"/>
          <exon e_start="56196" e_stop="56104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</genome_strand>
        <mrna_strand>GAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337620" ref_strand="+" ref_description="SGN-E337620 [cTOE-11-P23]">
      <seq>gagagtcgaagctacagaatttcagttcgccgttgcggaagctccatagcctaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttcctgtgtagcaaaaggagtgccaaggagcaacgtgatgatgcaaaaaagtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57153" stop="55808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56853" g_stop="56655" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56108" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="288" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E337620" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56853" e_stop="56655"/>
          <exon e_start="56196" e_stop="56108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAG</genome_strand>
        <mrna_strand>GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGTTGCGGAAGCTCCATAGCCTAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCTGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249508" ref_strand="+" ref_description="SGN-E249508 [cLEF-56-D19]">
      <seq>ctaagttcgccggagaaagagagtcgaagctaccagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaaggtgcagtttccggtgtagcaaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57171" stop="55844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56871" g_stop="56655" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56144" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="271" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E249508" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56871" e_stop="56655"/>
          <exon e_start="56196" e_stop="56144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTA-CAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAG</genome_strand>
        <mrna_strand>CTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACCAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297291" ref_strand="+" ref_description="SGN-E297291 [cLET-29-M4]">
      <seq>gccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccggttctggttttctcaacaggcgtggatatgccgcggcatcacaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57163" stop="55868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56863" g_stop="56655" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56168" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="238" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E297291" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56863" e_stop="56655"/>
          <exon e_start="56196" e_stop="56168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAGGTG</genome_strand>
        <mrna_strand>GCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCTGGTTTTCTCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCCGCGGCATCACAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243577" ref_strand="+" ref_description="SGN-E243577 [cLED-34-C8]">
      <seq>taagttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57170" stop="55871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56870" g_stop="56655" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56171" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="242" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E243577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56870" e_stop="56655"/>
          <exon e_start="56196" e_stop="56171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAG</genome_strand>
        <mrna_strand>TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245366" ref_strand="+" ref_description="SGN-E245366 [cLEF-53-B16]">
      <seq>gttcgccggagaaagagagtcgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgttctttctctaactctaagactctctctgctttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcggcatcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57167" stop="55871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56867" g_stop="56655" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56171" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="239" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E245366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56867" e_stop="56655"/>
          <exon e_start="56196" e_stop="56171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCGGCATCACAAG</genome_strand>
        <mrna_strand>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCGGCATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244307" ref_strand="+" ref_description="SGN-E244307 [cLEF-37-K5]">
      <seq>cgaagctacagaatttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcttattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcggtctttctctaactctaagactctctctggtttcgtctccgactccgtttctgcttttctcagcaggcgtggatatgcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57147" stop="55881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56847" g_stop="56655" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56196" g_stop="56181" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="209" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E244307" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56847" e_stop="56655"/>
          <exon e_start="56196" e_stop="56181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAGGTAATGATCATAACGTTCGTAATATGAATCTAAACAGGAAATATTCAAATTTTGAAATCGGTGAACGTGAATGTGTACCGCTGTTTCCGTTGAGTTTTTCGGTGTAAATCTAAAATTTTCTCAGCTATATTGCATCTGAGTTAAATTCTGTGGTTTTTTCACAGCATTATTTTAGAATTATGCTATGCATAACGATAACAGGGGATCGAAGTTCTCTGTTTTTCTTAGCTGGTAATAACCGAAACATCCGTTTATCCCCTGGATAAAAGGCGTTAGCATACAACTTTTTTAAATCAACAAGCGTGATTGTCGCTGCACATTTTGAACTTTTTCTTTTATCAATGTAATAGTATATTTTATACGTACTTGGATTTTTTTTGTTCGTAGCAAAAACAGAGGATTGTATCGGCGGCTAATTTGCTGTGATGTGAATGTGAATTTTTTGTGTGTATGTACAGGCGTGGATATGCAGCG</genome_strand>
        <mrna_strand>CGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGGTCTTTCTCTAACTCTAAGACTCTCTCTGGTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286063" ref_strand="+" ref_description="SGN-E286063 [cLES-13-A6]">
      <seq>tttcagttcgccgctgcggaagctccatagccaaactccttccgccgcagcgttcgtattcagaaattctcttgctccgactccgatctcgatatcataataagcaatggctcgatctttctctaactctaagactctctctgctttcgtctccgactccggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="57134" stop="56369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56834" g_stop="56669" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E286063" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56834" e_stop="56669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCT</genome_strand>
        <mrna_strand>TTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCGTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGATCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63193" stop="62298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62893" g_stop="62572" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62893" e_stop="62572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAGCAAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63193" stop="62298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62893" g_stop="62603" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62893" e_stop="62603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723357" ref_strand="+" ref_description="SGN-E723357 [FC20BA07]">
      <seq>ggccgaattggtccaaataattagaccagatctaactgggctgattttcctttacaagcccattttcttatccagcccaagcccaattagaacccctactcgtgcccaaaaatttctggagaaattaacgactactgaagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccgaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggtatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctccgccaaatagcatattgtttgtgcagaatcttcctcatcagtctactccaatgatgctacaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63492" stop="69440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63786" g_stop="64084" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="472" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="566" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="655" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69140" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="782" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E723357" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63786" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCATTTGTCCAAATAATTAGAGAAGATCTAACTGGGCTGATTTTCCTTTACAAGCCCATTTTCTTATCCAGCCCAAGCCCAATTAGAACCCCTACTCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCT</genome_strand>
        <mrna_strand>GGCCGAATTGGTCCAAATAATTAGACCAGATCTAACTGGGCTGATTTTCCTTTACAAGCCCATTTTCTTATCCAGCCCAAGCCCAATTAGAACCCCTACTCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCGAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGTATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209693" ref_strand="+" ref_description="SGN-E209693 [cLEC-54-P24]">
      <seq>tcgtgcccagaaatttctggagaaattaacgactactgaagtttctacctcaccggcgaaagttgcagctaggcgttgacgatcagccatggcggaggcgaaccatgatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcaaggttttgctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63585" stop="68452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63885" g_stop="64084" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="373" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="467" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E209693" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63885" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG</genome_strand>
        <mrna_strand>TCGTGCCCAGAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTTGACGATCAGCCATGGCGGAGGCGAACCATGATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAAGGTTTTGCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310722" ref_strand="+" ref_description="SGN-E310722 [cLEZ-15-C20]">
      <seq>aaaaatttctggagaaattaacgactactgaagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63593" stop="69342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63893" g_stop="64084" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="365" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="459" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="548" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69042" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="577" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E310722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63893" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGC</genome_strand>
        <mrna_strand>AAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366420" ref_strand="+" ref_description="SGN-E366420 [cLPT-1-F11]">
      <seq>aagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccagaatacgaacccgaatccggcccctagcggcggcgaagttccaccgaatgtgactatttacatcaacaacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaaaaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63623" stop="69357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63923" g_stop="64084" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="335" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="429" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69057" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="562" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E366420" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63923" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</genome_strand>
        <mrna_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAGAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326387" ref_strand="+" ref_description="SGN-E326387 [cTOC-14-G23]">
      <seq>aagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagaatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63623" stop="69342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63923" g_stop="64084" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="336" r_length="174" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="430" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="519" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69042" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="548" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E326387" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63923" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAG-ATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGC</genome_strand>
        <mrna_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGAATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251243" ref_strand="+" ref_description="SGN-E251243 [cLEG-10-M23]">
      <seq>aagtttctacctcaccggcgaaagttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63623" stop="69337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63923" g_stop="64084" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="335" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="429" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69037" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="542" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E251243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63923" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGT</genome_strand>
        <mrna_strand>AAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624101" ref_strand="+" ref_description="SGN-E624101 [GI|1050839]">
      <seq>tttctacctcaccggcgaaagttgcagctaggcgtagacgaggagccatggcggaggcgaaccaaaatacgaacccgaatccagccccaagcggcggcgaaactccaccgaatgtgactatttacatcaacaacctcaatgaaaaaatcaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatacttgaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcatgaggataaagggagaaagaaaaaggaccagcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtgccggaggctcctgctcctccaaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatgatgctacaaatgctcttctgccaatatccaggcttcaaggaagtcaggatgattgaggcaaagcctggaattgctttcatagaatatggagatgagatgcaatccactgttgctatgcaagccctgcaaggattcaaaattaccgccgagaatcccatgttgattacatatgcaaagaagtagataagactatattttagctgctgtctgtagaattaaacatcaactttcaactaggatttgagtgttgcaattttaagctttatgatccttggttatctaagtttagccgtgtatttgctgtgtactagcagcaccttgtaattttgatgtgcttctatagaccatttaccatttttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63626" stop="69784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63926" g_stop="64084" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="332" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="426" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="515" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69484" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="990" r_length="475" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E624101" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>986</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63926" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTC-ACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACT---AGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAA</genome_strand>
        <mrna_strand>TTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGGAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCAGCCCCAAGCGGCGGCGAAACTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATCAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTTGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCATGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTGCCGGAGGCTCCTGCTCCTCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTCAAGGAAGTCAGGATGATTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCCACTGTTGCTATGCAAGCCCTGCAAGGATTCAAAATTACCGCCGAGAATCCCATGTTGATTACATATGCAAAGAAGTAGATAAGACTATATTTTAGCTGCTGTCTGTAGAATTAAACATCAACTTTCAACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGTTATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCAGCACCTTGTAATTTTGATGTGCTTCTATAGACCATTTACCATTTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705210" ref_strand="+" ref_description="SGN-E705210 [FA26BH09]">
      <seq>gttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccgaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggtatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctccgccaaatagcatattgtttgtgcagaatcttcctcatcagtctactccaatgatgctacaaatgctcttctgccaatatccaggctttaaggaagttaggatggttgaggncaagcctggaattgctttcatagaatatggagatgagatgcaatcgactgttgccatgcaggccctgcaaggcttcaaaattaccgccgacaatcccatgctgattacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63646" stop="69596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63946" g_stop="64084" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="312" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="406" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="495" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69296" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="778" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E705210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63946" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATG</genome_strand>
        <mrna_strand>GTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCGAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGTATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGNCAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311900" ref_strand="+" ref_description="SGN-E311900 [cTOA-15-I4]">
      <seq>ttgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63647" stop="69333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63947" g_stop="64084" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="311" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="405" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="494" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69033" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="514" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E311900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63947" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACAT</genome_strand>
        <mrna_strand>TTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369720" ref_strand="+" ref_description="SGN-E369720 [TUS-25-G3]">
      <seq>tgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgtagtaccggatgctcctgcttcgtcaatagcatatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63648" stop="69390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63948" g_stop="64084" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="310" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69091" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="570" r_length="77" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E369720" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63948" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTT</genome_strand>
        <mrna_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGTAGTACCGGATGCTCCTGCTTCGTC-AATAGCATATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248992" ref_strand="+" ref_description="SGN-E248992 [cLEF-49-E17]">
      <seq>tgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63648" stop="69357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63948" g_stop="64084" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="310" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69057" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="537" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E248992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63948" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</genome_strand>
        <mrna_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241403" ref_strand="+" ref_description="SGN-E241403 [cLED-28-P21]">
      <seq>tgcagctaggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63648" stop="69354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63948" g_stop="64084" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="310" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="404" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="493" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69054" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="534" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E241403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63948" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGT</genome_strand>
        <mrna_strand>TGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457411" ref_strand="+" ref_description="SGN-E457411 [cPRO-2-L9]">
      <seq>gctaggcgtagacgaggagccatggcggaagcaaaccaaaatacgaacccgaatccggccccaagcggcggcgaaactccaccgaatgtgactatttacatcaacaacctcaatgaaaaaatcaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatacttgaggttttagcattcaaaaccctaaagcacaaaggacaggcgtgggtagtgtttgaggaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcatgaggataaagggagaaagaaaaaggaccagcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgctgcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctcctccaaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatcatgctacaaatgctcttctgccaatatccaggcttcaaggaagtcaggatggttgaggctaagcctggaattgctttcatagaatatggagatgagatgcaatccactgttgctatgcaagccctgcaaggattcaaaattacccgccgagatcccatgttgattacatatgcaaagaagtagataagactatattttagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63652" stop="69629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63952" g_stop="64084" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="306" r_length="173" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="400" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="489" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69329" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="805" r_length="316" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E457411" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63952" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTA-CCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCT</genome_strand>
        <mrna_strand>GCTAGGCGTAGACGAGGAGCCATGGCGGAAGCAAACCAAAATACGAACCCGAATCCGGCCCCAAGCGGCGGCGAAACTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATCAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTTGAGGTTTTAGCATTCAAAACCCTAAAGCACAAAGGACAGGCGTGGGTAGTGTTTGAGGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCATGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCTGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCTCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATCATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTCAAGGAAGTCAGGATGGTTGAGGCTAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCCACTGTTGCTATGCAAGCCCTGCAAGGATTCAAAATTACCCGCCGA-GATCCCATGTTGATTACATATGCAAAGAAGTAGATAAGACTATATTTTAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613313" ref_strand="+" ref_description="SGN-E613313 [63085]">
      <seq>ctaggcgtagacgaggagccatggcggaggcgaaccaaaatacgaacccgaatccagccccaagcggcggcgaaactccaccgaatgtgactatttacatcaacaacctcaatgaaaaaatcaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatacttgaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcatgaggataaagggagaaagaaaaaggaccagcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtgccggaggctcctgctcctccaaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatgatgctacaaatgctcttctgccaatatccaggcttcaaggaagtcaggatgattgaggcaaagcctggaattgctttcatagaatatggagatgagatgaatccactgttgctatgcaaggcctgcaaggattcaaaattaccggcgagaatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63653" stop="69581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63953" g_stop="64084" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="305" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="399" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="488" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69281" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="755" r_length="267" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E613313" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63953" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCA</genome_strand>
        <mrna_strand>CTAGGCGTAGACGAGGAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCAGCCCCAAGCGGCGGCGAAACTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATCAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTTGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCATGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTGCCGGAGGCTCCTGCTCCTCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTCAAGGAAGTCAGGATGATTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATG-AATCCACTGTTGCTATGCAAGGCCTGCAAGGATTCAAAATTACCGGCGAGAATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272699" ref_strand="+" ref_description="SGN-E272699 [cLEM-21-C14]">
      <seq>aggcgtagacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccaaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggaatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63655" stop="69357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63955" g_stop="64084" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="303" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="397" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="486" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69057" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="530" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E272699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63955" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</genome_strand>
        <mrna_strand>AGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417349" ref_strand="+" ref_description="SGN-E417349 [STM-25-E2]">
      <seq>agacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccccagcggcggcgaagttccaccgaatgtgactatttacatcaacaacctcaacgaaaaaattaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaaaaaggaccagcaagatggtaatcaagctggaatgggtctgaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctcctccaaatagcatattgtttgtgcagaatcttcctcatcagtctactccaatgatgctacaaatgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63661" stop="69441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63961" g_stop="64084" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="297" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="391" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="480" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69141" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="608" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E417349" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63961" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTT</genome_strand>
        <mrna_strand>AGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCCAGCGGCGGCGAAGTTCCACCGAATGTGACTATTTACATCAACAACCTCAACGAAAAAATTAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATGGTAATCAAGCTGGAATGGGTCTGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCTCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445999" ref_strand="+" ref_description="SGN-E445999 [cSTA-19-H19]">
      <seq>agacgagcagccatggcggaggcgaaccaaaatacgaacccgaatccggcccccagcggcggcgaagttccaccgaatgtgactatttacatcaacaacctcaacgaaaaaattaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaaaaaggaccagcaagatggtaatcaagctggaatgggtctgaatcctgcatatgctggtgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63661" stop="68833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63961" g_stop="64084" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="297" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="391" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68533" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E445999" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63961" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTAT</genome_strand>
        <mrna_strand>AGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCCAGCGGCGGCGAAGTTCCACCGAATGTGACTATTTACATCAACAACCTCAACGAAAAAATTAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATGGTAATCAAGCTGGAATGGGTCTGAATCCTGCATATGCTGGTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414260" ref_strand="+" ref_description="SGN-E414260 [STM-19-A6]">
      <seq>cgaggagccatggcggaggcgaaccaaaatacgaacccgaatccagcccctagcggcggcgaagctccaccgaatgtgactatttacatcaacaacctcaatgaaaaaatcaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatacttgaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcatgaggataaagggagaaagaaaaaggaccagcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctcctccaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatgatgctacaaatgctcttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63664" stop="69445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63964" g_stop="64084" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="294" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="388" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="477" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69145" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="608" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E414260" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63964" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGC</genome_strand>
        <mrna_strand>CGAGGAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCAGCCCCTAGCGGCGGCGAAGCTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATCAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTTGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCATGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCTCC-AATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473541" ref_strand="+" ref_description="SGN-E473541 [cSTB-32-P21]">
      <seq>cgaggagccatggcggaggcgaaccaaaatacgaacccgaatccagcccctagcggcggcgaagctccaccgaatgtgactatttacatcaacaacctcaatgaaaaaatcaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatacttgaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63664" stop="68402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63964" g_stop="64084" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="294" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68102" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="341" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E473541" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63964" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGA</genome_strand>
        <mrna_strand>CGAGGAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCAGCCCCTAGCGGCGGCGAAGCTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATCAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTTGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729344" ref_strand="+" ref_description="SGN-E729344 [LA20DB02]">
      <seq>catggcggaggcgaaccaaaatacgaacccgaatccggcccctagcggcggcgaagttccaccgaatgtgactatttacatcaataacctcaatgaaaaaattaagcttgaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatactggaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgatgaagtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggtatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63672" stop="69370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63972" g_stop="64084" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="286" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="380" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="469" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69070" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="526" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E729344" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63972" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCT</genome_strand>
        <mrna_strand>CATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCGAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGTATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405912" ref_strand="+" ref_description="SGN-E405912 [PPI-2-C3]">
      <seq>ctgtgttctcaaagtttggtaagaaaccttgaggttttagcacttcaaaaccctaaagcataaaggccaggcgtgggtagtgtttgaagaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcatgaggataaagggagaaagaaaaaggaccagcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgcagcacctcctttctcaaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctcctncaaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatgatgctacaaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63904" stop="69439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64204" g_stop="64355" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="248" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="337" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69014" g_stop="69139" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="462" r_length="125" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E405912" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64204" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTCTCACAGTTTGGTAAGATA-CTGGAGGTTTTAGCA-TTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTC</genome_strand>
        <mrna_strand>CTGTGTTCTCAAAGTTTGGTAAGAAACCTTGAGGTTTTAGCACTTCAAAACCCTAAAGCATAAAGGCCAGGCGTGGGTAGTGTTTGAAGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCATGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCA-AAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCTNCAAATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATGATGCTACAAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733935" ref_strand="+" ref_description="SGN-E733935 [LB11BD05]">
      <seq>cgctcttcgccagatgcagggttttcctttctatgataagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagccgatggtacttttgttccccgagaaaaaagaaagaggcacgaggataaagggagaaagaagaaggaccagcaagatgctaatcaagctggtatgggccggaatcctgcatatgctggtgcttatggtgcagcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctccgccaaatagcatattgtttgtgcagaatcttcctcatcagtctactccaatgatgctacaaatgctcttctgccaatatccaggctttaaggaagttaggatggttgaggcaaagcctggaattgctttcatagaatatggagatgagatgcaatcgactgttgccatgcaggccctgcaaggcttcaaaattaccgccgacaatcccatgctgattacatatgcacagaagtagataagactatattttagctgctgtctgtagaattaaacatttactttcactaggatttgagtgttgcaatttcaagctttatgatccttggatatctaagtttagccgtgtatttgctgtgtactagcaccctgtaattttgatgtgcttctatcgaccatttgccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="64011" stop="69777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64310" g_stop="64355" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="140" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="229" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69014" g_stop="69477" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="693" r_length="464" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E733935" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64310" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTCACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTT</genome_strand>
        <mrna_strand>CGCTCTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGTATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCACAGAAGTAGATAAGACTATATTTTAGCTGCTGTCTGTAGAATTAAACATTTACTTTCACTAGGATTTGAGTGTTGCAATTTCAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCACCCTGTAATTTTGATGTGCTTCTATCGACCATTTGCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714485" ref_strand="+" ref_description="SGN-E714485 [FB11CC11]">
      <seq>ggataaacggagatagaagaaggaccagactccatgctaatcaagctggtatgggccggaatcctgcatatgcatggtgcttatggagcggcacctccattgtactcacaaataccatacatgggtggagctaaacctgcactaccagacgctcctgctccgccatatatcatattgcttgtgcagaatcttcctcatcaatctactcactatgatgctacaaatgctcttctgccaatatccaggctttaaggaagttatgatggttgaggcaaagcctgaaattgctttcataaaatatggagatgagatgcaatcgactgttgccatgcaggccctgcaaggcttctaaataaccgccgacaatcccatgctgattacttatgcaaagaagtagataagactatattttagctgctgactgaagaattaaacatttactttctctaagattagagtgttgcaattttattctttatgatcctaggatatctaagtttagccgtgtatttgctgtgaactagcaccttgaaattttgatgtgcttctatggaccagttgccattttaaaacagtgtcaaatctcatttaaacattatttggtggagaacaaacaatctcattgcctctataatctacattgttgaattattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="68184" stop="69864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68457" g_stop="68548" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="98" r_length="93" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68549" i_stop="68697" i_length="149">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.474" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68698" g_stop="68702" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="102" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68703" i_stop="69013" i_length="311">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69014" g_stop="69568" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="658" r_length="556" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E714485" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68457" e_stop="68548"/>
          <exon e_start="68698" e_stop="68702"/>
          <exon e_start="69014" e_stop="69568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGAAAGAAGAAGGACCAG-CAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGC-TGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTC-CAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTCACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAAGTGTCAAGTCTCATTTAAACATTATTTGGTGGAGAACAAACAATCTCTTTGCCTCTATAGTCTACATTGTTGAAGTATTCAGAA</genome_strand>
        <mrna_strand>AACGGAGATAGAAGAAGGACCAGACTCCATGCTAATCAAGCTGGTATGGGCCGGAATCCTGCATATGCATGGTGCTTATGGAGCGGCACCTCC-.....................................................................................................................................................AT-TG.......................................................................................................................................................................................................................................................................................................................TACTCACAAATACCATACATGGGTGGAGCTAAACCTGCACTACCAGACGCTCCTGCTCCGCCATATATCATATTGCTTGTGCAGAATCTTCCTCATCAATCTACTCACTATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTATGATGGTTGAGGCAAAGCCTGAAATTGCTTTCATAAAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCTAAATAACCGCCGACAATCCCATGCTGATTACTTATGCAAAGAAGTAGATAAGACTATATTTTAGCTGCTGACTGAAGAATTAAACATTTACTTTCTCTAAGATTAGAGTGTTGCAATTTTATTCTTTATGATCCTAGGATATCTAAGTTTAGCCGTGTATTTGCTGTGAACTAGCACCTTGAAATTTTGATGTGCTTCTATGGACCAGTTGCCATTTTAAAACAGTGTCAAATCTCATTTAAACATTATTTGGTGGAGAACAAACAATCTCATTGCCTCTATAATCTACATTGTTGAATTATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414261" ref_strand="-" ref_description="SGN-E414261 [STM-19-A6]">
      <seq>gcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgcagcacntcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctcctccaaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatgatgctacaaatgctcttctgccaatatccaggtttcaaggaagttaggatggttgaggcaaagcctggaattgctttcatagaatatggagatgagatgcaatccactgttgctatgcaagccctgcaaggattcaaaattaccgcccgagaatcccatgttgattacatatgcaaagaagtagataagactatattttagctgctgtctgtagaattaaacatcaactttcaactaggatttgagtgttgcaattttaagctttatgatccttggttatctaagtttagccgtgtatttgctgtgtactagcagcaccttgtaattttgatgtgcttctatagaccatttaccatttttatgaagtgtcagtcgagtatgaacattatttggtggagaaaatgatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="68179" stop="69832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68479" g_stop="68548" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69014" g_stop="69532" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="591" r_length="521" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E414261" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414261" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68479" e_stop="68548"/>
          <exon e_start="69014" e_stop="69532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCG-CCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTC-ACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACT---AGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAAGTGTCAAGTCTCATTTAAACATTATTTGGTGGAGAACAAACAATCTCT</genome_strand>
        <mrna_strand>GCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCAGCACNTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCTCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGTTTCAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCCACTGTTGCTATGCAAGCCCTGCAAGGATTCAAAATTACCGCCCGAGAATCCCATGTTGATTACATATGCAAAGAAGTAGATAAGACTATATTTTAGCTGCTGTCTGTAGAATTAAACATCAACTTTCAACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGTTATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCAGCACCTTGTAATTTTGATGTGCTTCTATAGACCATTTACCATTTTTATGAAGTGTC-AGTCGAGTATGAACATTATTTGGTGGAG-A-AAATGATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605059" ref_strand="+" ref_description="SGN-E605059 [57080]">
      <seq>gaaatcttcaattctatattcaggtggatgtgatagaatctcagtggaacgttttgcaatctcatattcagaattctcaggatttcacggaacttgtgggctttcatcaagagtacttggctgcgctaatttcacaatctttcttggacatcggttctgtctcaagaattctggatggaataatgaaactatgcttgcagttctgttggaagatcgaaaatgacgaaagcaatagaactactagtgaactggagcacatagctgaggagttcaacaaaaaatcaaactccctatacactatactccgaagtagcaggcttgctgggagccagagagctccgttccttagacaatttcttttgagactcaacttcaattccttctttgaggcaactgcaagaggggtgctcaatgttgtcaaccctcgcccatccgtatctgttctgcagtgacaatttcttcttcttaaagcctcccaatgtaattttgctgtaagcattgctttgtctgctagttttttccttgctttttcctgtgtgcgcgtgtgctgttacatgcctttgtaagtcgacagagttagaattgacgtatagttgattgactatttaaacgattgatgtaagcagtaagagcatctgctaccttttccttgcaaagccaatgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="78292" stop="81656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78592" g_stop="78614" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78615" i_stop="79211" i_length="597">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79212" g_stop="79300" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="112" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79301" i_stop="80190" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80191" g_stop="80344" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="266" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80345" i_stop="80921" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80922" g_stop="81044" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="389" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81045" i_stop="81123" i_length="79">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81124" g_stop="81363" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="630" r_length="241" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E605059" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78592" e_stop="78614"/>
          <exon e_start="79212" e_stop="79300"/>
          <exon e_start="80191" e_stop="80344"/>
          <exon e_start="80922" e_stop="81044"/>
          <exon e_start="81124" e_stop="81363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTTCAATTCTATATTCAGGTAATTTCCTGTAAGATATATGTGAGCATTCTGTCAGTTATTATTGCTTAATAGACGGTCCAACTTTATTTAATCTAATGCTTGTTATGTGTAATAGATTTAATGCTAAAAGGCACTTTGGAATTTCGATGATCACATGAATATATGAGCTTTGATATATTAAACTAATCAGGCAGTTAGCTTCTTTCATGTTCTTCAGCAGAAAATAGACTTTTGAAGTGCACAACTGGGCTTATTTTCATGGACCTGCATAGAGTTGAATATTGGAACTCTGTACTTTCACATGGGCTGTCTTATAGTGAATAATTATGATACCTTATAGCTTGCAAAAGCATATCTGAGGTTTTTAGTTCCTATATATGATATAAATGTCACAATTTGACATTTTTCAACATCATCTGAAAAAATTTTACTAATGCGTATAAAAGAACATGTCATAGTCCATCACCACTAGTGTTGTGATCCTATTTCTTAATCAGTAGTTGACGAAACATTCACAGAAGGGTCTCTGTTAGACAACCTTGAAAGTCTTGTTTCTTCATTGCCTTCCACGATAATGACTATGCAAAAACCTAGTTAACAAGTTTTATTTCCCAGGTGGATGTGATAGAATCTCAGTGGAACGTTTTGCAATCTCACATTCAGAATTCTCATGATTTCACGGAACTTGTGGGCTTTCATCAAGAGTAAGTAATTGAACATTTCAATGTGTATTATGCTGCCAGTAACTATTGAATAGTGATCGCAACCGCTGCTATTAGTGCCTTTTGGAATTTGAAATTTGTGTTATCTATCGAATGTTCTTCCCGAGTTCATACACTTTGCCTTATGCTTCTTATATTTTTGTCTTCCATTTAGGTGTATATTGCCAAATATTATCACTGTAATTAGTTGTTGAAACATGAACCTACTTTGATATCATATTGTAGAATTGGAGCTAATGGAATGTTGTTAATCATTATGAATCTGCACCCAAGGGTGTGGCCTATTGGACAATGAATTGGGTTGAGAACCATAAGGTCTCACATTAATATCCCAGTATGGACAAAAACGCTAGGTATTTTCTTTCTATCTCCCAGCCTTGGTGAACAGAGTTACGCTACCTATTATTGGTGGGAAGTGGCAGGTATCCAGTAGAATTAGTGGAGATGCATGCAAGCTGACCTGGACACTACTGTTATAAAAAGTTCTATGAATCTAAGTTGTAGACTTCTTGTTTACTGTTTCATCTGCGGGACATTCTATCTCAAATATAGGTTCTATCTGTTTTGAACTATTTTTTGCAATGTGACGACTGTTGCATAACCACTGTCGTAACCTTTTCACACTAAAGTAACTAACATAAGCAAAAAAAAGTTCTGCCTAATAAGTTAGAAGCGTATCATGATTTTTTGTCTTCCAGAGTTCATACACTTTGAGTTTTGCACCTTAAGTTCTCATCTTATTAACTTCTAGTAGTTTTTTCAGTAACCCTTATTTTTAACAGAAACAAGATTACTATATAGTTGCTACTCATTTTTTGTGATTGTTGTGTGTTGTTTGATATAAAAGTTGATGGACATTGGCTGTTTTTCAGATACTTGGCTGCGCTAATTTCACAATCTTTCTTGGACATCGGTTCTGTCTCAAGAATTCTGGATGGAATCATGAAACTATGCTTGCAGTTCTGTTGGAAGATCGAAAATGACGAAAGCAATAGAACTACTAGTGAACTGGAGCACATAGCTGAGGTACTATTGAGTTGATTTATGCTTCTGGTGGTTTCATTTTCTAATGATAGCCAAGAATAACATGTTCAGATAAGATTGATGGCTGGTCCATTCAAATTCATCACTAAGAAGCAAGAACTTTCCATACACAAATTGGTCAAAACAGTTCGCTCTTTGTAGTTTGTTCACTACCTCTGACATTCTTCATCTAAATACACTCTTAAATAGAAGCCAATCAAGCCCCAGAGCGTCTTTTGGTTGATGTCTTGATCAATGTCTTAGTCGCCTGTGTCAGTATCTAACTTCTAACACTTGATTAACCCCCAACTCATCTGACTAATGAGTGCTGACAAAGATGTGATGGCAGCTTATTTTACTCATCAAAATTACTTCACGACGTAAAAATTAGACTCCTGCACTAGATTATCAGTGGCTTTTGTTGTTGAAGAATTTATTACTTGCTAATGATGAAATCTTATATTCGGTACTTGAGTTTGATCTTTTTTTCTCTATGGTCGTCAATCTGTGTTTTGAATTATTTCTTGTATTTATTGACTGGTTCCTGATGTAATACCTCATATTTTTTATGACTTCTCAGGAGTTCAACAAAAAATCAAACTCCCTATACACGATACTTCGAAGTAGCAGGCTTGCTGGGAGCCAGAGAGCTCCATTCCTTAGACAATTTCTTTTGAGACTCAACTTCAATTCCTTCTTTGAGGTAAATCTCTTCTGCAGTTACATGGAAAACATCATATTTCATTTGCTTATGTTATTTATATTACTTTATTCATCAACAGGCAACTGCAAGAGGGGTGCTCAACGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCACCCAATCTAATTTTTCTGTAAGCCTTCCTTTGTCTGCTAGTTTTTTCCTT-CTTTTCCCTGTGTGCGCATGTGTTTTTACATGCCTCTGTAAGTCGTCACATTTAGAATTGACGTATAGTTGATTGATTATATAAACGATTGCTGTAGCCTGTAAG</genome_strand>
        <mrna_strand>GAAATCTTCAATTCTATATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGTGATAGAATCTCAGTGGAACGTTTTGCAATCTCATATTCAGAATTCTCAGGATTTCACGGAACTTGTGGGCTTTCATCAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGCTGCGCTAATTTCACAATCTTTCTTGGACATCGGTTCTGTCTCAAGAATTCTGGATGGAATAATGAAACTATGCTTGCAGTTCTGTTGGAAGATCGAAAATGACGAAAGCAATAGAACTACTAGTGAACTGGAGCACATAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCAACAAAAAATCAAACTCCCTATACACTATACTCCGAAGTAGCAGGCTTGCTGGGAGCCAGAGAGCTCCGTTCCTTAGACAATTTCTTTTGAGACTCAACTTCAATTCCTTCTTTGAG...............................................................................GCAACTGCAAGAGGGGTGCTCAATGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCTCCCAATGTAATTTTGCTGTAAGCATTGCTTTGTCTGCTAGTTTTTTCCTTGCTTTTTCCTGTGTGCGCGTGTGCTGTTACATGCCTTTGTAAGTCGACAGAGTTAGAATTGACGTATAGTTGATTGACTATTTAAACGATTGATGTAAGCAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592993" ref_strand="+" ref_description="SGN-E592993 [36213]">
      <seq>cttttgagactcaacttcaattccttctttgaggcaactgcaagaggggtgctcaatgttgtcaaccctcgcccatccgtatctgttctgcagtgacaatttcttcttcttaaagcctcccaatgtaattttgctgtaagcattgctttgtctgctagttttttccttctttttcctgtgtgcgcgtgtgctgttacatgcctttgtaagtcgacaagtttagaattgacgtatagttgattgactatttaaacgattgatgtaagcagtaagagcatctgctacctttccttgcaatttcagctggtgccatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="80712" stop="81716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81012" g_stop="81044" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81045" i_stop="81123" i_length="79">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81124" g_stop="81403" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="306" r_length="273" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="326"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E592993" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81012" e_stop="81044"/>
          <exon e_start="81124" e_stop="81403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGAGACTCAACTTCAATTCCTTCTTTGAGGTAAATCTCTTCTGCAGTTACATGGAAAACATCATATTTCATTTGCTTATGTTATTTATATTACTTTATTCATCAACAGGCAACTGCAAGAGGGGTGCTCAACGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCACCCAATCTAATTTTTCTGTAAGCCTTCCTTTGTCTGCTAGTTTTTTCCTTCTTTTCCCTGTGTGCGCATGTGTTTTTACATGCCTCTGTAAGTCGTCACATTTAGAATTGACGTATAGTTGATTGATTATATAAACGATTGCTGTAGCCTGTAAGCAGTAAGAACGTCTGCTACCTTTCCTTGCAATTTCAGCTG</genome_strand>
        <mrna_strand>CTTTTGAGACTCAACTTCAATTCCTTCTTTGAG...............................................................................GCAACTGCAAGAGGGGTGCTCAATGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCTCCCAATGTAATTTTGCTGTAAGCATTGCTTTGTCTGCTAGTTTTTTCCTTCTTTTTCCTGTGTGCGCGTGTGCTGTTACATGCCTTTGTAAGTCGACAAGTTTAGAATTGACGTATAGTTGATTGACTATTTAAACGA-T--TG-A---TGTAAGCAGTAAGAGCATCTGCTACCTTTCCTTGCAATTTCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392622" ref_strand="+" ref_description="SGN-E392622 [TUS-35-J14](-)">
      <seq>aaaaaaaagattctttggatccatttctgatgagttttccggtgagaaaaatgtacagaatcagaggaagaagatgaagataagcgacggcttaataccctccaaagaattttgttggttttgttaaagttggtgtcaatataataatactatgtttatttttttgcctatttgttgtgttaggtgggtgaggtgtttatagaggttggtagaggtggatgtatcaatttaagagtggataaatttttgtacgagtcaatttatttgtctgattttgaatcgatatgaaatttaaaaaagtcaacataactatctaaaatagagagattatttttgaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83602" stop="56761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83304" g_stop="82968" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82967" i_stop="81294" i_length="1674">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81293" g_stop="81275" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="357" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E392622" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83304" e_stop="82968"/>
          <exon e_start="81293" e_stop="81275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATCAA-ATAACTATCTAAAATAGAGAGATTATTTTTGATGTACCCTTAATTTCAAATTAAAGATAGGTAAATTGTATTAGTATATTTTATAATCTTGTAATGTTAAATATGTAAAATAAAGAGTTATTTTTAATAGATTGTTAATTTGAAATGTGTACTAAATTTTGTAAATCTTAAATTGAAGATATGTAGATTTTATCAATGTAATCTTATACTGTTAAACGTGTAATACAAAAAGTAAGAATCAAATCATTATTACTCCCTCCATTTCATAATAATTTAATTTTTGACGCATCTCACAACCTTTAAGAAAAGTTTAAGACATAAATTAAACATAGTTTTCTATTTTTACCCTTATTAATTATCAACTTTATAATTAAAATAATTAAATATTAATTAATTACTAATTTCAATATTAACTAATGAAGTATAAAATTGAATGAACACTATAAAGTAATCTTAAAATTAAACACTTAAATTAATCTGAAAAATAAAAAATACCTCAAAATTAATATGAAATGACGGGAGTAAAAATGAAAAAAACACTAAAACTAACCTATTGTAATGGATGGACTAATTGTTTTGATATTAGAAATTTACAAAAGGGAATAAACTCATTCTATTTAATTTTTTTTTTTTCATTTCTAATCTTAAACTCAAAATCTTTGATCAAAGTATTCCCTCCTTTTAAATTCCTTTATTTCGTTTTTATTTGATACAAATTTAAAAAAGTAAAAAGAAATAATTCAAATCTTGCTATATTAATATATAGATATATAAAATATCATTTAATTTTTTAATTATAAACATATTATGTGCTTAAAATAAAACAAAAAAATTACTAAAAAATATCTATAAATAATTTAAAACGAATAGAATAGAAAAATCTCGACTACCTAACCAGGTTTGGTTGGCTTTGTTAAATTCTCCCACCTAATTTTGTGTACATAATGGATTGGTGAGCCTCACAGAGCCAGGGGTTGAAAGTTGTATTCTCTGGTCGTTAGATAAGAAACGCTTTTCAAATCTAAACCAAAAGAGTTTGACTTCAAAATCAAGTCTACTAGGTACGGAATCACGTTTGTTAAGAGTATTTTATCATTAATGTGGGATCGAATTTAGAACATGTTTAGATTGGCATAAAAAAAAGAAGTAGATTTTAAATAAAAAATAAAAAGTCAAATTTAAATAATATGCGAGTCAAAAAAATAAAAATTAGAGGAGCCTACTTTTAGTTTTTAATTTATTTTACATTAGTTTTTAATCTTGCCAAACAATTCCTAACTTCTTTTTATATTTGTCAAACACTTTTTCAAAAGTAAAAAACCTGACTTAAAAGTAGGTTTGACCAACTTTTATATTAATCGAAACCCGTTATCCTCTTAGAAGGTGTTTGATTTGGCTTAAAGTTGATCAAACTTACTTTTAAGTCAGTTTTTGAATTCTGAAAGTGTTTGACAGTAGAATCTGAAGTTGTAAACCTTGATATCACCTGATGGATTATAAGAACACACAAAGCATCACATAACCAACTCCAAAACAGTAGTCATTGAAAACCACTCAAGTTGGCCAAACCAAAAAGACATGAAATGTTAGATGGCACCAGCTGAAATTGCAAGGAAAGGTAGCAGACGTTCTTACTGCTTACAGGCTACAGCAATCGTTTATATAATCAATCAACTATACGTCAATTCTAAATGTGACGACTTACAGAGGCATGTAAAAACACATG</genome_strand>
        <mrna_strand>AAAAAAAAGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAAAAAGTCAACATAACTATCTAAAATAGAGAGATTATTTTTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201782" ref_strand="+" ref_description="SGN-E201782 [cLEC-11-F9]">
      <seq>aacaatcgacgctcgtcgaagcccagcagcattagaaggctcagaaggacgaagagggttaagagttagagtattctgaagagggttagcagaaatagtggacttgaatttggaatttgtaggtggaagagaagaagctgaaagtgagagatttgtaagagatgaaacttgagttgggattttgactttgtttggtttgttgaaaagggttgagattttaggaggattaaggaaatgggttggaaggattgtggataaagcaagtgaaattgaagctatcggtaaaatgggtgtctgctgttgttcttcttgaggtgtttgggcttctgagttatcggaaaattgattctttggatccatttctgatgagttttccggtgagaaaaatgtacagaatcagaggaagaagatgaagataagcgacggcttaataccctccaaagaattttgttggttttgttaaagttggtgtcaatataataatactatgtttatttttttgcctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83940" stop="82832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83640" g_stop="83132" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E201782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83640" e_stop="83132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTT</genome_strand>
        <mrna_strand>AACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746102" ref_strand="+" ref_description="SGN-E746102 [GI|47105300]">
      <seq>gaggcaaaaaaataaacatagtattattatattgacaccaactttaacaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcatcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82836" stop="86601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83135" g_stop="84237" g_length="1103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1103" r_length="1103" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1104" r_stop="1333" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1426" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86316" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1427" r_stop="1649" r_length="223" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E746102" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83135" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAA</genome_strand>
        <mrna_strand>GAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCATCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591506" ref_strand="+" ref_description="SGN-E591506 [45219]">
      <seq>acctcaccagctttaacaaacccaacaaattctttggagggcattaagccgtcgcttatctccatcttcatcttcttcttcctctgtacatttctcaccggaaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgaaccttctaatgctgctgggcttcgacgagcttcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcaggctcataatgagtccatgtctgtcttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgtaggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82870" stop="84262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83166" g_stop="83962" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E591506" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83166" e_stop="83962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGG-AAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGC-GGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGG</genome_strand>
        <mrna_strand>ACCTCACCAGCTTTAACAAACCCAAC-AAATTCTTTGGAGGGCATTAAGCCGTCGCTTATCTCCATCTTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAACCTTCTAATGCTGCTGGGCTTCGACGAGCTTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCAGGCTCATAATGAGTCCATGTCTGTCTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449110" ref_strand="+" ref_description="SGN-E449110 [cSTS-5-K6]">
      <seq>cctcaccagctttacaaacccaacaaattctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgccaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82870" stop="84375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83167" g_stop="83596" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83597" i_stop="83911" i_length="315">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83912" g_stop="84075" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="596" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E449110" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83167" e_stop="83596"/>
          <exon e_start="83912" e_stop="84075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACG</genome_strand>
        <mrna_strand>CCTCACCAGCTTT-ACAAACCCAAC-AAATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTT...........................................................................................................................................................................................................................................................................................................................CTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453762" ref_strand="+" ref_description="SGN-E453762 [cSTS-21-E19]">
      <seq>caccagctttaacaaaccaacaaattctttggagggcattaagccgtcgcttatcttcatcttcttcttcatctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatatcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctcaggcaagagggtctgatcttgttgttagaattgggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82870" stop="84172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83170" g_stop="83872" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E453762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83170" e_stop="83872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTC---AAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGC</genome_strand>
        <mrna_strand>CACCAGCTTTAAC-AAACCAAC-AAATTCTTTGGAGGGCATTAAGCCGTCGCTTATCTTCATCTTCTT-CT-TCA-TCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATATCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCT-CAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730931" ref_strand="+" ref_description="SGN-E730931 [LA25CF03]">
      <seq>ccctttaaataaccataaaaattctttggagggtgttaagccctcgcttatcttcatcttcttcctctgattctggacatttttctcaccggaaaactcatcagaaatggatccaaacaatcaattttccgataactcacaagcccaaacgcctcaagaagaacaacagcagacaccgattttaccgatagcttcaatttcacttgcttttccaccatccttccaccccatttccttaatcctcctaaaatctcaccccttttcaacaaagcaaacaaagtcgaaatcacaactcaagtttcatctcttacaaatctctcactttcatcttcttctcttccacctacgaattccgaattcaagtccactatttctgctaaccctcttcaaaatactctctctcttaaccctcttcgaccctccgagccttctaatgctgctgggcttcgacgagcgtctattgattcgttccataacgatccccctgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtgaactgttttgacccgagagattatggaaaatcctcatctgggtttgatacaactgggccggataaggctagttttttgattgattctgttgctgaccttaagaaaaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82876" stop="84133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83174" g_stop="83833" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E730931" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83174" e_stop="83833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTAC</genome_strand>
        <mrna_strand>CCCTTTAA-ATAACCATAAAAATTCTTTGGAGGGTGTTAAGCCCTCGCTTATCTTCATCTTCTTCCTCTGATTCTGGACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAACAATCAATTTTCCGATAACTCACAAGCCCAAACGCCTCAAGAAGAACAACAGCAGACACCGATTTTACCGATAGCTTCAATTTCACTTGCTTT-TCCACCATCCTTCCACCCCATTTCCTTAATCCTCCTAAAATCTCACCCCTTTTCAACAAAGCAAACAAAGTCGAAATCACAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCATCTTCTTCTCTTCCACCTACGAATTCCGAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAAAATACTCTCTCTCTTAACCCTCTTCGACCCTCCGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCTATTGATTCGTTCCATAACGATCCCCCTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTGAACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATACAACTGGGCCGGATAAGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAAGAAAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729968" ref_strand="+" ref_description="SGN-E729968 [LA22CF03]">
      <seq>ctttaacaaaaccaacaaaattctttggagggtgttaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82876" stop="84290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83176" g_stop="83990" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E729968" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83176" e_stop="83990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGA</genome_strand>
        <mrna_strand>CTTTAACAAAACCAACAAAATTCTTTGGAGGGTGTTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283968" ref_strand="+" ref_description="SGN-E283968 [cLER-13-P5]">
      <seq>acaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82881" stop="83812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83181" g_stop="83512" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E283968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83181" e_stop="83512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTC</genome_strand>
        <mrna_strand>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445724" ref_strand="+" ref_description="SGN-E445724 [cSTA-18-G16]">
      <seq>aaacccaacaaattctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82884" stop="83891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83183" g_stop="83591" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E445724" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83183" e_stop="83591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCG</genome_strand>
        <mrna_strand>AAACCCAAC-AAATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253410" ref_strand="+" ref_description="SGN-E253410 [cLEG-24-M16]">
      <seq>accaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82886" stop="84018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83186" g_stop="83718" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E253410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83186" e_stop="83718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCT</genome_strand>
        <mrna_strand>ACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467554" ref_strand="+" ref_description="SGN-E467554 [cSTB-49-G18]">
      <seq>attctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttangaagaatctacaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82895" stop="84138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83195" g_stop="83838" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E467554" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83195" e_stop="83838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCA</genome_strand>
        <mrna_strand>ATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTANGAAGAATCTACAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727367" ref_strand="+" ref_description="SGN-E727367 [LA14CA04]">
      <seq>cggtcgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgcccttttaagttggagcaaatgcctacgaattacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82914" stop="84384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83212" g_stop="84084" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E727367" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83212" e_stop="84084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTG-CCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGA</genome_strand>
        <mrna_strand>CGGTCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338462" ref_strand="+" ref_description="SGN-E338462 [cTOE-15-D11]">
      <seq>gagggtcgcttatcttcatcttcttcctctgattctgtccatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacaccccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctaccaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82917" stop="84077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83212" g_stop="83777" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E338462" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83212" e_stop="83777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACA-CCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTA-CAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGG</genome_strand>
        <mrna_strand>GAG-GGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTCCATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACCAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324017" ref_strand="+" ref_description="SGN-E324017 [cTOC-3-P23]">
      <seq>aagccgtcgcttatgcttcatcttcttgctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82912" stop="83999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83212" g_stop="83699" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E324017" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83212" e_stop="83699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTAT-CTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</genome_strand>
        <mrna_strand>AAGCCGTCGCTTATGCTTCATCTTCTTGCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729343" ref_strand="+" ref_description="SGN-E729343 [LA20DB01]">
      <seq>gccgtcgcttatcttcatcttacttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttgccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82914" stop="84204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83214" g_stop="83904" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E729343" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83214" e_stop="83904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGCTTATCTTCATCTT-CTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTT-CCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCT</genome_strand>
        <mrna_strand>GCCGTCGCTTATCTTCATCTTACTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTGCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272873" ref_strand="+" ref_description="SGN-E272873 [cLEM-25-D3]">
      <seq>ccgtcgcttatcttcatcttcttcctctgattctgtacattactctcaccggggaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagctgacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82915" stop="84118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83215" g_stop="83818" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E272873" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83215" e_stop="83818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACC</genome_strand>
        <mrna_strand>CCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTACTCTCACCGGGGAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCTGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727565" ref_strand="+" ref_description="SGN-E727565 [LA15AC08]">
      <seq>gtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgagccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82917" stop="84364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83217" g_stop="84064" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E727565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83217" e_stop="84064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGC</genome_strand>
        <mrna_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGAGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312351" ref_strand="+" ref_description="SGN-E312351 [cTOA-5-D13]">
      <seq>gtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82917" stop="84075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83217" g_stop="83775" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E312351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83217" e_stop="83775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACT</genome_strand>
        <mrna_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367260" ref_strand="+" ref_description="SGN-E367260 [cLPT-5-B15]">
      <seq>tcgcttatcttcatcttcttcctctgattctgtacatttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccatcttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccgactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacgaattccaaattcaagtccactatttctgctaaccctcttcaaaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82918" stop="84009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83218" g_stop="83709" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E367260" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83218" e_stop="83709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</genome_strand>
        <mrna_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACA--TTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATCTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCGACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACGAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467865" ref_strand="+" ref_description="SGN-E467865 [cSTB-1-P8]">
      <seq>cgcttatcttcatcttcttcttcatctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatatcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82926" stop="84162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83219" g_stop="83862" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E467865" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83219" e_stop="83862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTC-A-A-GAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGA</genome_strand>
        <mrna_strand>CGCTTATCTTCATCTTCTT-CT-TCA-TCTGTACAT--TTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATATCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590527" ref_strand="+" ref_description="SGN-E590527 [44125]">
      <seq>cttatctccatcttcatcttcttcttcctctgtacatttctcaccggaaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgaaccttctaatgctgctgggcttcgacgagcttcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcagctcataatgagtccatgtctgtcttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattaagctaaagctgtaggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82921" stop="84292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83221" g_stop="83992" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E590527" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83221" e_stop="83992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGG-AAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATT-AGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATG</genome_strand>
        <mrna_strand>CTTATCTCCATCTTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAACCTTCTAATGCTGCTGGGCTTCGACGAGCTTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCAGCTCATAATGAGTCCATGTCTGTCTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306807" ref_strand="+" ref_description="SGN-E306807 [cLEY-11-C16]">
      <seq>ttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82922" stop="84134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83222" g_stop="83834" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E306807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83222" e_stop="83834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACA</genome_strand>
        <mrna_strand>TTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415113" ref_strand="+" ref_description="SGN-E415113 [STM-20-D20]">
      <seq>ttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttggataaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82945" stop="84143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83239" g_stop="83843" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E415113" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83239" e_stop="83843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGG</genome_strand>
        <mrna_strand>TTCTTCCTCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGGATAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475143" ref_strand="+" ref_description="SGN-E475143 [cSTB-39-I24]">
      <seq>ttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82945" stop="84108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83239" g_stop="83808" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E475143" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83239" e_stop="83808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCT</genome_strand>
        <mrna_strand>TTCTTCCTCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437462" ref_strand="+" ref_description="SGN-E437462 [cSTA-3-J8]">
      <seq>cctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82947" stop="83999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83244" g_stop="83699" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E437462" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83244" e_stop="83699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</genome_strand>
        <mrna_strand>CCTCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438361" ref_strand="+" ref_description="SGN-E438361 [cSTA-7-H5]">
      <seq>tctcaccggaaaactcatcggaaatggatcccaggaatcaattttgtgataacccagaaacccaaaaacctcaagaagaagaacaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatatcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatgtctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgcaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgctgtggctgtgtactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82958" stop="84085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83258" g_stop="83785" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E438361" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83258" e_stop="83785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTC---AAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATA</genome_strand>
        <mrna_strand>TCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTGTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATATCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATGTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGCAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGCTGTGGCTGTGTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484533" ref_strand="+" ref_description="SGN-E484533 [cSTE-13-P23]">
      <seq>ctcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttatgtgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgaccttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgtaggagctgaagctgtgtatgctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82971" stop="84232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83271" g_stop="83932" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E484533" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83271" e_stop="83932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATA</genome_strand>
        <mrna_strand>CTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTATGTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGACCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729470" ref_strand="+" ref_description="SGN-E729470 [LA21AF10]">
      <seq>gaatcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaaccccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtccgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttacgaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaacgatgaggatttggaggtgaaatatttctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83014" stop="84319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83314" g_stop="84019" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E729470" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83314" e_stop="84019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGG</genome_strand>
        <mrna_strand>GAATCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAACCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCCGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTACGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAACGATGAGGATTTGGAGGTGAAATATTTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392372" ref_strand="+" ref_description="SGN-E392372 [TUS-35-J14]">
      <seq>aatttttcgacgctcgtcgaagcccagcagcattagaaggctcagaaggacgaagagggttaagagttagagtattctgaagagggttagcagaaatagtggacttgaatttggaatttgtaggtggaagagaagaagctgaaagtgagagatttgtaagagatgaaacttgagttgggattttgactttgtttggtttgttgaaaagggttgagattttaggaggattgaggaagtgggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83935" stop="83097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83641" g_stop="83397" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E392372" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83641" e_stop="83397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGA</genome_strand>
        <mrna_strand>AATTTTTCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTGAGGAAGTGGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254133" ref_strand="+" ref_description="SGN-E254133 [cLEG-34-K1]">
      <seq>ttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83135" stop="84285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83435" g_stop="83985" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E254133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83435" e_stop="83985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATG</genome_strand>
        <mrna_strand>TTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481614" ref_strand="+" ref_description="SGN-E481614 [cSTD-18-F22]">
      <seq>ctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcccacaaattacggagggtttagggaaaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaagggattgcctgctagaggtgatgtggaaccctgggagattccttctttggttgatttggggctcaatcctagtgccacaatgggccagaatgggaaaccagctgctaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83249" stop="84537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83549" g_stop="84237" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E481614" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83549" e_stop="84237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG</genome_strand>
        <mrna_strand>CTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCCACAAATTACGGAGGGTTTAGGGAAAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAAGGGATTGCCTGCTAGAGGTGATGTGGAACCCTGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214506" ref_strand="+" ref_description="SGN-E214506 [cLEC-77-P10]">
      <seq>tctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataanattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatggtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83271" stop="84345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83571" g_stop="84045" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E214506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83571" e_stop="84045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGAT</genome_strand>
        <mrna_strand>TCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAANATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467051" ref_strand="+" ref_description="SGN-E467051 [cPRO-26-L16]">
      <seq>gtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcccacaaattacggagggtttagggaaaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaagggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggccagaatggaaaaccagctgctaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83400" stop="84537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83700" g_stop="84237" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E467051" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83700" e_stop="84237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG</genome_strand>
        <mrna_strand>GTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCCACAAATTACGGAGGGTTTAGGGAAAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAAGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472520" ref_strand="+" ref_description="SGN-E472520 [cSTB-29-E3]">
      <seq>gttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgaccttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgtaggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgccaacgaattacggagggtttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83492" stop="84517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83792" g_stop="84217" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E472520" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83792" e_stop="84217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATC</genome_strand>
        <mrna_strand>GTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGACCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCAACGAATTACGGAGGGTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284051" ref_strand="+" ref_description="SGN-E284051 [cLER-13-O5]">
      <seq>aagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgatggttgatttggggctcaatcctagtgccaccatgggtcagaatggagaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgctgagacttagaaaatttgcagcagaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83524" stop="85922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83824" g_stop="84237" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85622" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="500" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E284051" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83824" e_stop="84237"/>
          <exon e_start="85537" e_stop="85622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCA</genome_strand>
        <mrna_strand>AAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGATGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCTGAGACTTAGAAAATTTGCAGCAGAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294288" ref_strand="-" ref_description="SGN-E294288 [cLET-14-D8](-)">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttgaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgattagccttttaagttggagcaaatgcctaccaattacggaggctttatggagaaagtgcagggattggaggtaaggaagacacttgaggcattggatcaattgaggggattgcctgctagatgtgatgtggaacctggggagattccttcgttgattgatttggggctcaatcctactgccactcatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgtacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83605" stop="85899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83905" g_stop="84237" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85599" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E294288" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294288" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83905" e_stop="84237"/>
          <exon e_start="85537" e_stop="85599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCAC-CATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTT</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTGAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTAGCCTTTTAAGTTGGAGCAAATGCCTACCAATTACGGAGGCTTTATGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACACTTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGATGTGATGTGGAACCTGGGGAGATTCCTTCGTTGATTGATTTGGGGCTCAATCCTACTGCCACTCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGTACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294287" ref_strand="+" ref_description="SGN-E294287 [cLET-14-D8]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttgaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgattagccttttaagttggagcaaatgcctaccaattacggaggctttatggagaaagtgcagggattggaggtaaggaagacacttgaggcattggatcaattgaggggattgcctgctagatgtgatgtggaacctggggagattccttcgttgattgatttggggctcaatcctactgccactcatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgtacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83605" stop="85899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83905" g_stop="84237" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85599" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E294287" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83905" e_stop="84237"/>
          <exon e_start="85537" e_stop="85599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCAC-CATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTT</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTGAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTAGCCTTTTAAGTTGGAGCAAATGCCTACCAATTACGGAGGCTTTATGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACACTTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGATGTGATGTGGAACCTGGGGAGATTCCTTCGTTGATTGATTTGGGGCTCAATCCTACTGCCACTCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGTACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289947" ref_strand="+" ref_description="SGN-E289947 [cLET-9-L1]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaagctttagggagaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83605" stop="84402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83905" g_stop="84102" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E289947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83905" e_stop="84102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTG</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAAGCTTTAGGGAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344812" ref_strand="+" ref_description="SGN-E344812 [cTOF-21-A4]">
      <seq>ggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaacaaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83695" stop="86493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83995" g_stop="84237" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="473" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86193" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="664" r_length="98" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E344812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83995" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAG</genome_strand>
        <mrna_strand>GGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAACA-AAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTC-AAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404669" ref_strand="+" ref_description="SGN-E404669 [PPC-14-J14]">
      <seq>ttgtatcatgttgatgatttgccttttaagttggagcaaatgccaacgaattacggagggtttaaggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaactgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaagagctgctgcttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83728" stop="86474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84028" g_stop="84237" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="440" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="533" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86174" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="614" r_length="81" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E404669" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84028" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACG</genome_strand>
        <mrna_strand>TTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCAACGAATTACGGAGGGTTTAAGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAACTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAAGAGCTGCTGCTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573355" ref_strand="-" ref_description="SGN-E573355 [32652]">
      <seq>gatgattgcctttaaagtgaacaaatgcccacgattacggaggtttaggagaaagtgccagggatttggaagtaaggaagacaatgaggcattggatcaattgaagggattgcctgcctagaggtgatgtggaacctggggagattccttctttgttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcacttcagagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaactgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggaagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaaggtttcctttttgtatcttgatttattttttccagaagtttagccgtggaatgttagagttgggctgtcattagattgaagcattcatcaatgatacattttgtcttttgacagtaagtgttggatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83740" stop="86599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84040" g_stop="84237" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="423" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="516" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86281" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="704" r_length="188" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E573355" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573355" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84040" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTG-CAGGGA-TTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTG-CTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGC</genome_strand>
        <mrna_strand>GATGA-TTGCCTTTAAAG-T-GAACAAATGCCCACG-ATTACGGAGG-TTTA-GGAGAAAGTGCCAGGGATTTGGAAGTAAGGAAGACAA-TGAGGCATTGGATCAATTGAAGGGATTGCCTGCCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTC-TTTGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTTCAGAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGAAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGGTTTCCTTTTTGTATCTTGATTTATTTTTTCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGGGCTGTCATTAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418599" ref_strand="+" ref_description="SGN-E418599 [STM-27-J24]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttcacgttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaagttttcctttttgtagcttgatttatttttcccagaagtttagccgtggaatgttagagttgaactgtcattagattgaagcattcatcaatggtacattcttgtcttttgacaataagtgttggatataaaaaatttgtcgccatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83808" stop="86636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84108" g_stop="84237" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="454" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86281" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="642" r_length="188" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E418599" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84108" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGC</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCAC..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGTTTTCCTTTTTGTAGCTTGATTTATTTTTCCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGAACTGTCATTAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418265" ref_strand="+" ref_description="SGN-E418265 [STM-27-M11]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaagttttcctttttgtagcttgatttatttttcccagaagtttagccgtggaatgttagagttgaactgtcattagattgaagcattcatcaatggtacatttttgtcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83808" stop="86599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84108" g_stop="84237" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="454" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86281" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="642" r_length="188" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E418265" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84108" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGC</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGTTTTCCTTTTTGTAGCTTGATTTATTTTTCCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGAACTGTCATTAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441194" ref_strand="+" ref_description="SGN-E441194 [cSTA-29-F5]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcatagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83808" stop="86250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84108" g_stop="84237" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85950" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="453" r_length="93" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E441194" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84108" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCA</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCATAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442330" ref_strand="+" ref_description="SGN-E442330 [cSTA-33-C17]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83808" stop="86248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84108" g_stop="84237" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85949" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="451" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E442330" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84108" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTC</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739888" ref_strand="+" ref_description="SGN-E739888 [LC19BA04]">
      <seq>gcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagactgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattaaaaaagtccacgtcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcaatgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggcgctgctgcttaattatggtatactcaaaaggaaaatgaaggtttcctttttgtatcttgatttatttttttcggaagtttagctgtggaatgttagagttggactgtcattgaattgaagcattttttcttttgacattaagtgttggacataaaagaatttgtcgccatttctagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83856" stop="86640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84156" g_stop="84237" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="312" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86336" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="647" r_length="242" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E739888" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84156" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTA</genome_strand>
        <mrna_strand>GCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGACTGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTAAAAAAGTCCACGTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCAATGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGCGCTGCTGCTTAATTATGGTATACTCAAAAGGAAAATGAAGGTTTCCTTTTTGTATCTTGATTTATTTTTTTCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGTCATTGAATTGAAGCATTTTTTCTTTTGACATTAAGTGTTG-GACATAAAAGAATTTGTCGCCATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284494" ref_strand="-" ref_description="SGN-E284494 [cLER-16-P2]">
      <seq>ggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcgaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="83866" stop="86620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84166" g_stop="84237" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="302" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="395" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86321" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="623" r_length="228" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E284494" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284494" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84166" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAAT</genome_strand>
        <mrna_strand>GGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCGAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279534" ref_strand="+" ref_description="SGN-E279534 [cLER-5-O14]">
      <seq>gaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85241" stop="86624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85541" g_stop="85766" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="319" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86094" g_stop="86324" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="550" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E279534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85541" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTG</genome_strand>
        <mrna_strand>GAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226505" ref_strand="+" ref_description="SGN-E226505 [cLEL-26-F8](-)">
      <seq>acttcaagaacgatttctgctgcctctgccaaagaaaaatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtaattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85553" stop="86737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85759" g_stop="85766" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="102" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86094" g_stop="86434" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="443" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="458"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E226505" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85759" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCC-AAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</genome_strand>
        <mrna_strand>ACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAAGAAAAATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226906" ref_strand="+" ref_description="SGN-E226906 [cLEL-26-F20](-)">
      <seq>tggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccgaaagtttagctgtggaatgttagagttggactgccattgaattaaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85876" stop="86737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86176" g_stop="86434" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="260" polyA_stop="275"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E226906" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86176" e_stop="86434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</genome_strand>
        <mrna_strand>TGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGAAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTAAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390468" ref_strand="+" ref_description="SGN-E390468 [TUS-40-C23]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgtgatagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataagagaatttgtcgccatttctatcacgcccctctacaatccttcttatgctagtatttatatatttttgatttcatctggaattgaaacaggtgtgataccaaacatacctgtacttgaaatatgtgtgccatgtttgagattaccatccatcttgaacccgccgagagtatccttgagcatcacatgatttactagtgatactcgtttcaatggaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85909" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86209" g_stop="86540" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E390468" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86209" e_stop="86540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTGATAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAGAGAATTTGTCGCCATTTCTATCACGCCCCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGGAATTGAAACAGGTGTGATACCAAACATACCTGTACTTGAAATATGTGTGCCATGTTTGAGATTACCATCCATCTTGAACCCGCCGAGAGTATCCTTGAGCATCACATGATTTACTAGTGATACTCGTTTCAATGGAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390093" ref_strand="+" ref_description="SGN-E390093 [TUS-17-C23](-)">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttttagcaagtcgctatacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85909" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86209" g_stop="86539" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E390093" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86209" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTTTAGCAAGTCGCTATACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390094" ref_strand="+" ref_description="SGN-E390094 [TUS-17-C23]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85909" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86209" g_stop="86539" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E390094" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86209" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390607" ref_strand="+" ref_description="SGN-E390607 [TUS-47-C24]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85909" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86209" g_stop="86539" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E390607" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86209" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390848" ref_strand="+" ref_description="SGN-E390848 [TUS-47-C24](-)">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctttacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85909" stop="86826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86209" g_stop="86538" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E390848" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86209" e_stop="86538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTT</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTTTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285047" ref_strand="+" ref_description="SGN-E285047 [cLER-19-P19]">
      <seq>ttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="85910" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86210" g_stop="86539" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E285047" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86210" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418067" ref_strand="+" ref_description="SGN-E418067 [STM-26-H10]">
      <seq>atctttggcatccaactgtcgattgtttcacttggaatactctcatcagagcctatgttcaacgaactcatcaaccttcaagccccatccataccccactctccatcttcctccgaatgcgcttccatggcgtccatattgattactacaccttcccttttctcctccagtcagtccattctccaccacacctccaattgggacgatccattcactcacaggttcttgtttttggtttttcatccgacccgtttgtccaaacttcgttgatcagtatgtacactgcttgtggcgatgtggggtctgcacgagatgtgtttgatgaaatgtctcaaccggatttgcctgcgtggaattctattgttaatgcgaacgtgaaagcgggtttgcttagtgttgcgcgtgaactgtttgttaaaatgccaagcagaaatgttgtatcttggagtagtatgttggatggttatgtgaggtggggtaagtgtgaagaagcattggagttgtttaatgagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="88139" stop="87024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87839" g_stop="87324" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E418067" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87839" e_stop="87324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATGGCATCGAACTGTCGATTGTTTCACTTGGAATACTCTGATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCACCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCCGTCCATTCTCCACTACACCTCCAATTGGGACGATCCATTCACTCACAAGTTCTTATTTTCGGTTTTTCATCCGACCCATTTGTCCAAACTTCGCTAATCAGTATGTACACTGCTTGCGGCGATGTGGGTTCTGCACGGGAGGTGTTTGATGAAATGTCTCAACGAGACTTGCCTGCGTGGAATTCTATTGTGAATGCGAATGTGAAAGCAGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCTAGTAGAAATGTTGTGTCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGAGTTGTTTAATCAGATGA</genome_strand>
        <mrna_strand>ATCTTTGGCATCCAACTGTCGATTGTTTCACTTGGAATACTCTCATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCATCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCAGTCCATTCTCCACCACACCTCCAATTGGGACGATCCATTCACTCACAGGTTCTTGTTTTTGGTTTTTCATCCGACCCGTTTGTCCAAACTTCGTTGATCAGTATGTACACTGCTTGTGGCGATGTGGGGTCTGCACGAGATGTGTTTGATGAAATGTCTCAACCGGATTTGCCTGCGTGGAATTCTATTGTTAATGCGAACGTGAAAGCGGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCAAGCAGAAATGTTGTATCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGAGTTGTTTAATGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447641" ref_strand="+" ref_description="SGN-E447641 [cSTA-28-G21]">
      <seq>atctttggcatccaactgtcgattgtatcacttggaatactctcatcagagcctatgttcaacgaactcatcaaccttcaagccccatccataccccactctccatctttctccgaatgcgcttacatggcgtccatattgattactacaccttcccttttctcctccagtcagtccattctccaccacacctccaattgggacgatccattcactcacaggttcttgtttttggtttttcatccgacccgtatgtccaaacttcgttgatcagtatgtacactgcttgtggcgatgtggggtctgcacgagatgtgtttgatgaaatgtctcaaccggatttgcctgcgtggaattctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="88139" stop="87178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87839" g_stop="87478" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E447641" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87839" e_stop="87478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATGGCATCGAACTGTCGATTGTTTCACTTGGAATACTCTGATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCACCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCCGTCCATTCTCCACTACACCTCCAATTGGGACGATCCATTCACTCACAAGTTCTTATTTTCGGTTTTTCATCCGACCCATTTGTCCAAACTTCGCTAATCAGTATGTACACTGCTTGCGGCGATGTGGGTTCTGCACGGGAGGTGTTTGATGAAATGTCTCAACGAGACTTGCCTGCGTGGAATTCTATT</genome_strand>
        <mrna_strand>ATCTTTGGCATCCAACTGTCGATTGTATCACTTGGAATACTCTCATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCATCCATACCCCACTCTCCATCTTTCTCCGAATGCGCTTACATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCAGTCCATTCTCCACCACACCTCCAATTGGGACGATCCATTCACTCACAGGTTCTTGTTTTTGGTTTTTCATCCGACCCGTATGTCCAAACTTCGTTGATCAGTATGTACACTGCTTGTGGCGATGTGGGGTCTGCACGAGATGTGTTTGATGAAATGTCTCAACCGGATTTGCCTGCGTGGAATTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287536" ref_strand="+" ref_description="SGN-E287536 [cLES-9-F23]">
      <seq>actgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgcctttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91785" stop="88278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91485" g_stop="91427" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88933" g_stop="88578" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="415" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88577" i_stop="88373" i_length="205">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88372" g_stop="88361" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="427" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E287536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91485" e_stop="91427"/>
          <exon e_start="88933" e_stop="88578"/>
          <exon e_start="88372" e_stop="88361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTAATTCTTTTTATGTTGCACATAAATGAAAACAAATAATTTGAAGTGGAGAGAGGTTTTACACTTGCTAGGAAGAATTATATGTTATTGTATGCCTGAAAATCTGTACTGTCGACTCACATTTTTCTGTTGTTTTGAAATGTGGGCAGGGAAAGTGAAAA</genome_strand>
        <mrna_strand>ACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC.............................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462945" ref_strand="+" ref_description="SGN-E462945 [cPRO-13-M1]">
      <seq>gagtttcttccttaaagagaaatacagagcgtaaagatgagccgagcagcagcagcagcagtgaagggcggtaagaagaagggtgcaagcttcgtcattgactgttcgaagccagtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactatcactcgtgacaagaacaagatcaccgtcacctgcaactcgactttttccaagaggtatctcaagtaccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcctccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatggccattcaatgtctctctttatctttttctttagtcggccttcgttttttgatccttatatcatctgttcgagttactaatgaatcttgtcttctcatttctagattattgttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtttnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91983" stop="88326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91786" g_stop="91775" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="269" r_length="257" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88626" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="586" r_length="317" r_score="0.893"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88625" i_stop="88373" i_length="253">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88372" g_stop="88362" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="597" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E462945" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91786" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88626"/>
          <exon e_start="88372" e_stop="88362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTAATTCTTTTTATGTTGCACATAAATGAAAACAAATAATTTGAAGTGGAGAGAGGTTTTACACTTGCTAGGAAGAATTATATGTTATTGTATGCCTGAAAATCTGTACTGTCGACTCACATTTTTCTGTTGTTTTGAAATGTGGGCAGGGAAAGTGAAA</genome_strand>
        <mrna_strand>GAGTTTCTTCCT........................................................................................TA-AAGAGAAATACAG--AGCGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGTAAGAAGAAGGGTGCAAGCTTCGTCATTGACTGTTCGAAGCCAGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTATCACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCGACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCAAGTACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCCTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGGCCATTCAATGTCTCTCTTTATCTT-TTTCTTTAGTCGGCCTTCGTTTTTTGATCCTTATATCATCTGTTCGAGTTACTAATGAATCTTGTCTTCTCATTTCTAGATTATTGTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTTT.............................................................................................................................................................................................................................................................NAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733085" ref_strand="+" ref_description="SGN-E733085 [LB03DG04]">
      <seq>cgcgtgtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagtagcagcagcagtgaagggtggaaagaagaagggggcgagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcagctttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttcttctttagtcggccttcactttttgatccttgtatcatctgttcgagttactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggttaattatgaaaatgtcaatttatctgtattgcctttctcctctggatgatctcaagacatatgtaagattaaaatagatataatatctcataattaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91989" stop="88216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91790" g_stop="91775" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91684" i_length="91">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91683" g_stop="91427" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="272" r_length="257" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88519" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="696" r_length="424" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="713"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733085" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91790" e_stop="91775"/>
          <exon e_start="91683" e_stop="91427"/>
          <exon e_start="88933" e_stop="88519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTA</genome_strand>
        <mrna_strand>CG-CGTGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGTAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCGAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAGCTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTC-TTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCTGTTCGAGTTACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGTTAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATGTAAGATTAAAATAGATATAATATCTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345647" ref_strand="+" ref_description="SGN-E345647 [cTOF-18-K6]">
      <seq>cactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattntgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgaattgcctttctcctctggatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92110" stop="88263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91810" g_stop="91775" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="296" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88563" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="667" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E345647" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91810" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCT</genome_strand>
        <mrna_strand>CACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTNTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGAATTGCCTTTCTCCTCTGGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458920" ref_strand="+" ref_description="SGN-E458920 [cPRO-32-F10]">
      <seq>cactcacagtaggccgtcgagtttcctccttaaagagaaatacagagcgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggtgcaagcttcgtcattgactgttcgaagccagtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggggattccgttactgtcactcgtgacaagaacaagatcaccgtcacctgcaactcgactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagagtgattgcttccaacaaggacaggaatgtttatgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatggccattcaatgtctctctttatcttcttctttaagcggccttcgttttttgatccttatatcatctgttcgagttactaatgaatcttgtcttctcatttctagattattgttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgttcatctttggggcaagttatgcaaaagtcaatttatctgtattgcatttctcctcttgatgatcacatgtaatttaatttgtgtgcattggagctataaacggccaagtgaaagtttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91983" stop="88249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91804" g_stop="91775" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="287" r_length="257" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88567" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="663" r_length="376" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E458920" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91804" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATG</genome_strand>
        <mrna_strand>CACTCACAGTAGGCCGTCGAGTTTCCTCCT........................................................................................TA-AAGAGAAATAC--AGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGTGCAAGCTTCGTCATTGACTGTTCGAAGCCAGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTCACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCGACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGAGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGGCCATTCAATGTCTCTCTTTATCTTC-TTCTTTAAGCGGCCTTCGTTTTTTGATCCTTATATCATCTGTTCGAGTTACTAATGAATCTTGTCTTCTCATTTCTAGATTATTGTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTTCATCTTTGGGGCAAGTTATGCAAAAGTCAATTTATCTGTATTGCATTTCTCCTCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353870" ref_strand="+" ref_description="SGN-E353870 [cTOS-10-C3]">
      <seq>agaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91980" stop="88279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91680" g_stop="91427" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88933" g_stop="88579" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="609" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E353870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91680" e_stop="91427"/>
          <exon e_start="88933" e_stop="88579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</genome_strand>
        <mrna_strand>AGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722007" ref_strand="+" ref_description="SGN-E722007 [FC15DG03]">
      <seq>gagagtcaccacttccatacactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagtagcagcagcagtgaagggtggaaagaagaagggggcgagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcagctttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttcttctttagtcggccttcactttttgatccttgtatcatctgttcgagttactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggttaattatgaaaatgtcaatttatctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92128" stop="88287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91829" g_stop="91775" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="315" r_length="260" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88588" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="670" r_length="355" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="722"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E722007" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91829" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGT</genome_strand>
        <mrna_strand>GAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGTAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCGAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAGCTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTC-TTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCTGTTCGAGTTACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGTTAATTATGAAAATGTCAATTTATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746042" ref_strand="+" ref_description="SGN-E746042 [GI|47105360]">
      <seq>gaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacatgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92100" stop="88287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91801" g_stop="91775" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="287" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88590" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="631" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="648"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E746042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91801" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCT</genome_strand>
        <mrna_strand>GAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACATGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571534" ref_strand="+" ref_description="SGN-E571534 [14375]">
      <seq>cacttccatacactcgcagtaggccgtcgagtttcctcctcagaagagaaatacagagtgtaaagatgagccgagcagcagcagcagcagtgaagggtggaaagaagaagggggcaaccttcgtcattgactgttcgaagccggtggaggacagtatcatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcactgtcagtcgtgataagaataagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtgagggattggcttagggtgattgcctccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatggccattcaatgtctctctttatctttttctttaatcggcctttgttttttgatccttatatcatctgttcgagttactaatgaaatcttgtcttctcatttctagattcattgttttgcagtttgcttatcagtaaaagaaaaacattacatcgatactttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95652" stop="88330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91820" g_stop="91775" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.804"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.80"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="298" r_length="258" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88630" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="614" r_length="316" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E571534" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91820" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATG-AATCCTGTCTTCTCATTTCTAGATT-TTGTTTTTGCAGTTTGCTTATCAGTAAAAG-AAAACATTACATCGATACTTTGGTTT</genome_strand>
        <mrna_strand>CACTTCCATACACTCGCAGTAGG-C-----CGTCGAGTTTCCTCCT........................................................................................CAGAAGAGAAATAC--AGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCAACCTTCGTCATTGACTGTTCGAAGCCGGTGGAGGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCACTGTCAGTCGTGATAAGAATAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTGAGGGATTGGCTTAGGGTGATTGCCTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGGCCATTCAATGTCTCTCTTTATCTT-TTTCTTTAATCGGCCTTTGTTTTTTGATCCTTATATCATCTGTTCGAGTTACTAATGAAATCTTGTCTTCTCATTTCTAGATTCATTGTTTTGCAGTTTGCTTATCAGTAAAAGAAAAACATTACATCGATACTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306494" ref_strand="+" ref_description="SGN-E306494 [cLEX-13-E16]">
      <seq>tcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91986" stop="88335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91788" g_stop="91775" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="274" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88635" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="573" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E306494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91788" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTT</genome_strand>
        <mrna_strand>TCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287412" ref_strand="+" ref_description="SGN-E287412 [cLES-15-O22]">
      <seq>tggaacgtaacctaaaatagggccaaaagtgcaaattagagagaggtgccacatttagcaagtaggaacgaaggaaaaccctaatttaacagagtcaccactttccatacactcacactaagccggggacgtcgagtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaaaggcgggaagaagaaaggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttanggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92218" stop="88451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91918" g_stop="91775" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91684" i_length="91">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91683" g_stop="91427" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="402" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88751" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="585" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E287412" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91918" e_stop="91775"/>
          <exon e_start="91683" e_stop="91427"/>
          <exon e_start="88933" e_stop="88751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCAC-TTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT</genome_strand>
        <mrna_strand>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTTCCATACACTCACACTAAGCCGGGGACGTCGAGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAAGGCGGGAAGAAGAAAGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTANGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276642" ref_strand="+" ref_description="SGN-E276642 [cLEN-14-E5]">
      <seq>tttaacagagtcaccacttccatacactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92134" stop="88484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91834" g_stop="91775" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="320" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88784" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="470" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E276642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91834" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATG</genome_strand>
        <mrna_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338914" ref_strand="+" ref_description="SGN-E338914 [cTOE-21-N17]">
      <seq>cctaatttaacagagtcacgcacttccatacactcacactaggccgtggacgtcgagtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattggctgagaatgaagcagatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92139" stop="88496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91839" g_stop="91775" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91684" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91683" g_stop="91427" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="323" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88796" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="462" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E338914" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91839" e_stop="91775"/>
          <exon e_start="91683" e_stop="91427"/>
          <exon e_start="88933" e_stop="88796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTTAACAGAGTCAC-CACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATT-GCTGAGAATGAAGCAGATGAAGA</genome_strand>
        <mrna_strand>CCTAATTTAACAGAGTCACGCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGGCTGAGAATGAAGCAGATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437671" ref_strand="+" ref_description="SGN-E437671 [cSTA-4-J17]">
      <seq>atttgaataacagcagaagagaaataagagtgtaaagatgagccgagcagcagcagcagcagcgaagggcgggaagaagaagggggcaagcttcgtcattgactgttctaagccagtggaggacagtatcatggagattggttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcactgtcagtcgtgataagaacaagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaagaagtacttgaagaaaaataatgtcagggattggctaaaggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgctgagaatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="91998" stop="88506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91699" g_stop="91427" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88933" g_stop="88806" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="398" r_length="128" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E437671" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91699" e_stop="91427"/>
          <exon e_start="88933" e_stop="88806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAG</genome_strand>
        <mrna_strand>ATTTGAATAACAGCAGAAGAGAAATA---AGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGCGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCTAAGCCAGTGGAGGACAGTATCATGGAGATTGGTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCACTGTCAGTCGTGATAAGAACAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAGAAGTACTTGAAGAAAAATAATGTCAGGGATTGGCTAAAGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCTGAGAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591339" ref_strand="+" ref_description="SGN-E591339 [45049]">
      <seq>gcaagtaggaacgaaggaaaaccctaatttaacagagtcaccacttccatacactcgcagtaggccgtcgagtttcctcctcagaagagaaatacagagtgtaaagatgagccgagcagcagcagcagcagtgaagggtggaaagaagaagggggcaaccttcgtcattgactgttcgaagccggtggaggacagtatcatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcactgtcagtcgtgataagaataagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtgagggattggcttagggtgattgcctccaacaaggacaggaatgtgtacgaattgcgctacttcaacattgctgagaaatgaagccagatgaaagcaagatttaaacatgggccatttcaaatgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="92161" stop="88471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91861" g_stop="91775" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91686" g_stop="91427" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="339" r_length="258" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88933" g_stop="88812" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="461" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E591339" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91861" e_stop="91775"/>
          <exon e_start="91686" e_stop="91427"/>
          <exon e_start="88933" e_stop="88812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGA</genome_strand>
        <mrna_strand>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCGCAGTAGG-C-----CGTCGAGTTTCCTCCT........................................................................................CAGAAGAGAAATAC--AGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCAACCTTCGTCATTGACTGTTCGAAGCCGGTGGAGGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCACTGTCAGTCGTGATAAGAATAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTGAGGGATTGGCTTAGGGTGATTGCCTCCAACAAGGACAGGAATGTGTACGAATTGCGCTACTTCAACATTGCTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718807" ref_strand="+" ref_description="SGN-E718807 [FC05DE05]">
      <seq>cccatggggatccgatagtcggccgccgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95635" stop="70742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95333" g_stop="95311" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="41" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="310" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92641" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="598" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92640" i_stop="90517" i_length="2124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90516" g_stop="90465" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="650" r_length="52" r_score="0.654"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E718807" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95333" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92641"/>
          <exon e_start="90516" e_stop="90465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCCGCCGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTGTCCCTTTTAAGATATCTACTTGTTAAGGGCCCAAATGAGATTTCAATTTGGGTGCATGGAGCAAATGATATTCTAATTACCAGCCCCTCCCTCTTCTTGTTTTTCTACCTTCATTTAAGTTCTGATTAAATTTGAAACAATACTGAATAGTTTCACATTGGGGTAAAGCTAGCGATGTCTGAATTACGTAAAACGTTTCTAACAAAATTGGCTCTGCATTTTCCAACAAAGTCTACTCTTTTCTGAACGCAACTTAAATTTAAACATCTAGTTAAAATGATCCTTGTTGATATGAATTGCTCTACTTTAACATTGCTTTCAACAATGACTACGCATTTTAAGAGCAAAAGTCATGTGAAACATATGTAACCGACTTAGAGCCTTATTAATGTTTCGTGTGATACTTGTTAACTTTGCGAAATATAGTAGGATTACTTGATTAGATTTTATTATGATGCAAAAATATGAACTTATACCTCGTATATATATTTTATTATTTATTTTATTTTTTTGTTAGAAAGGAGAAAAGTTTGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAA</genome_strand>
        <mrna_strand>TCGGCCGCCGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605852" ref_strand="+" ref_description="SGN-E605852 [21783]">
      <seq>tcggcacgaggcaaataccttgtcaaaaagtactgaagaaaaataccgttaggggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatggctattcaatgaccctttatcttcttattttgaaccttatatcatctgtttgagttattaatgagttgtatcttctcatttctagattattgattttttgttcccttatcagtaaaagaaaacattactttgatactttggtttgttcatctttggggtcaactttttgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="93222" stop="70742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92928" g_stop="92603" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="328" r_length="321" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92602" i_stop="91933" i_length="670">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91932" g_stop="91922" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="339" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91921" i_stop="90509" i_length="1413">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90508" g_stop="90465" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="383" r_length="44" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E605852" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92928" e_stop="92603"/>
          <exon e_start="91932" e_stop="91922"/>
          <exon e_start="90508" e_stop="90465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTA-GGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTGTCCCTTTTAAGATATCTACTTGTTAAGGGCCCAAATGAGATTTCAATTTGGGTGCATGGAGCAAATGATATTCTAATTACCAGCCCCTCCCTCTTCTTGTTTTTCTACCTTCATTTAAGTTCTGATTAAATTTGAAACAATACTGAATAGTTTCACATTGGGGTAAAGCTAGCGATGTCTGAATTACGTAAAACGTTTCTAACAAAATTGGCTCTGCATTTTCCAACAAAGTCTACTCTTTTCTGAACGCAACTTAAATTTAAACATCTAGTTAAAATGATCCTTGTTGATATGAATTGCTCTACTTTAACATTGCTTTCAACAATGACTACGCATTTTAAGAGCAAAAGTCATGTGAAACATATGTAACCGACTTAGAGCCTTATTAATGTTTCGTGTGATACTTGTTAACTTTGCGAAATATAGTAGGATTACTTGATTAGATTTTATTATGATGCAAAAATATGAACTTATACCTCGTATATATATTTTATTATTTATTTTATTTTTTTGTTAGAAAGGAGAAAAGTTTGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAA</genome_strand>
        <mrna_strand>G-A-GGCAAATACCTTGTCAAAAAGTAC-TGAAGAAAAATACCGTTAGGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGGCTATTCAATGACCC-TTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGTTGTATCTTCTCATTTCTAGATTATTGATTTTTTGTTCCCTTATCAGTAAAAGAAAACATTACTTTGAT--ACTTTGGTTTGTTCATCTTTGGGGTCAACTTTTTGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723002" ref_strand="+" ref_description="SGN-E723002 [FC19AA12]">
      <seq>aatcggccgaattgggccgccgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95638" stop="56761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95345" g_stop="95311" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="304" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92714" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="519" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92713" i_stop="91933" i_length="781">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91932" g_stop="91922" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="530" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91921" i_stop="90517" i_length="1405">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90516" g_stop="90471" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="576" r_length="46" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E723002" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95345" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92714"/>
          <exon e_start="91932" e_stop="91922"/>
          <exon e_start="90516" e_stop="90471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTGTCCCTTTTAAGATATCTACTTGTTAAGGGCCCAAATGAGATTTCAATTTGGGTGCATGGAGCAAATGATATTCTAATTACCAGCCCCTCCCTCTTCTTGTTTTTCTACCTTCATTTAAGTTCTGATTAAATTTGAAACAATACTGAATAGTTTCACATTGGGGTAAAGCTAGCGATGTCTGAATTACGTAAAACGTTTCTAACAAAATTGGCTCTGCATTTTCCAACAAAGTCTACTCTTTTCTGAACGCAACTTAAATTTAAACATCTAGTTAAAATGATCCTTGTTGATATGAATTGCTCTACTTTAACATTGCTTTCAACAATGACTACGCATTTTAAGAGCAAAAGTCATGTGAAACATATGTAACCGACTTAGAGCCTTATTAATGTTTCGTGTGATACTTGTTAACTTTGCGAAATATAGTAGGATTACTTGATTAGATTTTATTATGATGCAAAAATATGAACTTATACCTCGTATATATATTTTATTATTTATTTTATTTTTTTGTTAGAAAGGAGAAAAGTTTGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAG</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGGCCGCCGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733323" ref_strand="+" ref_description="SGN-E733323 [LB04CC07]">
      <seq>ctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95534" stop="56761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95315" g_stop="95311" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="274" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92589" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="614" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92588" i_stop="91899" i_length="690">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91898" g_stop="91881" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="632" r_length="18" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E733323" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95315" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92589"/>
          <exon e_start="91898" e_stop="91881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTGTCCCTTTTAAGATATCTACTTGTTAAGGGCCCAAATGAGATTTCAATTTGGGTGCATGGAGCAAATGATATTCTAATTACCAGCCCCTCCCTCTTCTTGTTTTTCTACCTTCATTTAAGTTCTGATTAAATTTGAAACAATACTGAATAGTTTCACATTGGGGTAAAGCTAGCGATGTCTGAATTACGTAAAACGTTTCTAACAAAATTGGCTCTGCATTTTCCAACAAAGTCTACTCTTTTCTGAACGCAACTTAAATTTAAACATCTAGTTAAAATGATCCTTGTTGATATGAATTGCTCTACTTTAACATTGCTTTCAACAATGACTACGCATTTTAAGAGCAAAAGTCATGTGAAACATATGTAACCGACTTAGAGCCTTATTAATGTTTCGTGTGATACTTGTTAACTTTGCGAAATATAGTAGGATTACTTGATTAGATTTTATTATGATGCAAAAATATGAACTTATACCTCGTATATATATTTTATTATTTATTTTATTTTTTTGTTAGAAAGGAGAAAAGTTTGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTA</genome_strand>
        <mrna_strand>CTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729939" ref_strand="+" ref_description="SGN-E729939 [LA22CC07]">
      <seq>ctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95534" stop="56762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95315" g_stop="95311" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="274" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92589" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="614" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92588" i_stop="92300" i_length="289">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92299" g_stop="92294" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="620" r_length="6" r_score="0.333"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92293" i_stop="91933" i_length="361">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91932" g_stop="91922" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="631" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E729939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95315" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92589"/>
          <exon e_start="92299" e_stop="92294"/>
          <exon e_start="91932" e_stop="91922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTGTCCCTTTTAAGATATCTACTTGTTAAGGGCCCAAATGAGATTTCAATTTGGGTGCATGGAGCAAATGATATTCTAATTACCAGCCCCTCCCTCTTCTTGTTTTTCTACCTTCATTTAAGTTCTGATTAAATTTGAAACAATACTGAATAGTTTCACATTGGGGTAAAGCTAGCGATGTCTGAATTACGTAAAACGTTTCTAACAAAATTGGCTCTGCATTTTCCAACAAAGTCTACTCTTTTCTGAACGCAACTTAAATTTAAACATCTAGTTAAAATGATCCTTGTTGATATGAATTGCTCTACTTTAACATTGCTTTCAACAATGACTACGCATTTTAAGAGCAAAAGTCATGTGAAACATATGTAACCGACTTAGAGCCTTATTAATGTTTCGTGTGATACTTGTTAACTTTGCGAAATATAGTAGGATTACTTGATTAGATTTTATTATGATGCAAAAATATGAACTTATACCTCGTATATATATTTTATTATTTATTTTATTTTTTTGTTAGAAAGGAGAAAA</genome_strand>
        <mrna_strand>CTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT.................................................................................................................................................................................................................................................................................................GTAAAA.........................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703764" ref_strand="+" ref_description="SGN-E703764 [FA22BF05]">
      <seq>gtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttattgagtttatcttttgttgttcttgtgtctttcttttaaccactgcgccattgatgatttccttcaatccttngaaagatcgattgagactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95537" stop="92159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95324" g_stop="95311" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="283" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92450" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="761" r_length="478" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E703764" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95324" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTG</genome_strand>
        <mrna_strand>GTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATG-TTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATTGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTNGAAAGATCGATTGAGACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371903" ref_strand="+" ref_description="SGN-E371903 [TUS-30-I2](-)">
      <seq>tttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttcttggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95528" stop="92226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95228" g_stop="94962" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92527" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="669" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E371903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95228" e_stop="94962"/>
          <exon e_start="92928" e_stop="92527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</genome_strand>
        <mrna_strand>TTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715201" ref_strand="+" ref_description="SGN-E715201 [FB13CE07]">
      <seq>gtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttattgagtttatcttttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95497" stop="92231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95197" g_stop="94962" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92531" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="634" r_length="398" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E715201" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95197" e_stop="94962"/>
          <exon e_start="92928" e_stop="92531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGT</genome_strand>
        <mrna_strand>GTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATTGAGTTTATCTTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551726" ref_strand="+" ref_description="SGN-E551726 [cTSB-1-K16]">
      <seq>tgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95393" stop="92230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95093" g_stop="94962" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92533" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="528" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="542"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E551726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95093" e_stop="94962"/>
          <exon e_start="92928" e_stop="92533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTT</genome_strand>
        <mrna_strand>TGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551822" ref_strand="+" ref_description="SGN-E551822 [cTSB-1-P13]">
      <seq>gtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatctttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95317" stop="92237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95017" g_stop="94962" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92536" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="449" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="472"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E551822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95017" e_stop="94962"/>
          <exon e_start="92928" e_stop="92536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTT</genome_strand>
        <mrna_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553003" ref_strand="+" ref_description="SGN-E553003 [cTSB-5-L2]">
      <seq>gtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatctttaaaaaaaaaaaaaacaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95317" stop="92237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95017" g_stop="94962" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92536" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="449" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="469"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E553003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95017" e_stop="94962"/>
          <exon e_start="92928" e_stop="92536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTT</genome_strand>
        <mrna_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724659" ref_strand="+" ref_description="SGN-E724659 [FC24DB09]">
      <seq>agggcgattggcggccaatcggccgaattgagggtcggggcgacgggtcaaataggaagaggaacgaggaaaaccctaattaaatataatcatccacttccatacactcgcagtcggccgccgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttattgagtttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95719" stop="92239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95414" g_stop="95311" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="136" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="405" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92539" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="795" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E724659" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95414" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCT</genome_strand>
        <mrna_strand>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATTGAGTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619725" ref_strand="-" ref_description="SGN-E619725 [70418]">
      <seq>ctccctatttgaataacagcagaagagaaataagagtgtaaagatgagccgagcagcagcagcagcagcgaagggcgggaagaagaagggggcaagcttcgtcattgactgttctaagccagtggaggacagtatcatggagattgcctctcttgacaagttccttcaagagagaatcaaggttggtggaaaagctggtgctcttggagattccgtcattgtcagtcgtgataagaacaagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatggctattcaatgaccctttatcttcttattttgaaccttatatcatctgtttgagttattaatgagttgtatcttctcatttctagattattgattttttgttcccttatcagtaaaagaaaacattactttgatactttggtttgttcatctttggggtcaactttttgcaagtcatcaatttctctgtattgccttttccctcttgatgatcacatgtaattttttgagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95534" stop="92242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95315" g_stop="95311" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="276" r_length="271" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92541" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="661" r_length="385" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E619725" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95315" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCC--G-AGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTAT</genome_strand>
        <mrna_strand>CTCCC................................................................................TATTTGAATAACAGCAGAAGAGAAAT-AAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGCGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCTAAGCCAGTGGAGGACAGTATCATGGAGATTGCCTCTCTTGACAAGTTCCTTCAAGAGAGAATCAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCATTGTCAGTCGTGATAAGAACAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGGCTATTCAATGACCC-TTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGTTGTATCTTCTCATTTCTAGATTATTGATTTTTTGTTCCCTTATCAGTAAAAGAAAACATTACTTTGAT--ACTTTGGTTTGTTCATCTTTGGGGTCAACTTTTTGCAAGTCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTTTTGAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352396" ref_strand="+" ref_description="SGN-E352396 [cTOS-9-J23]">
      <seq>ttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95322" stop="92260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95022" g_stop="94962" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92559" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="431" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E352396" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95022" e_stop="94962"/>
          <exon e_start="92928" e_stop="92559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACAT</genome_strand>
        <mrna_strand>TTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272167" ref_strand="+" ref_description="SGN-E272167 [cLEN-4-K23]">
      <seq>cgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattntttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95537" stop="92309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95325" g_stop="95311" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="284" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92609" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="604" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E272167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95325" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTT</genome_strand>
        <mrna_strand>CGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTNTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219375" ref_strand="+" ref_description="SGN-E219375 [cLEL-11-F23](-)">
      <seq>ccgttactgtcactcgtgataagaataaaatcaaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95325" stop="92327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95025" g_stop="94962" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92632" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="362" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="388"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E219375" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95025" e_stop="94962"/>
          <exon e_start="92928" e_stop="92632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTACTGTCACTCGTGATAAGAATAAAATC-ACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTT</genome_strand>
        <mrna_strand>CCGTTACTGTCACTCGTGATAAGAATAAAATCAACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336142" ref_strand="+" ref_description="SGN-E336142 [cTOE-12-K3]">
      <seq>tttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95537" stop="92341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95318" g_stop="95311" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="277" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92641" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="565" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E336142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95318" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA</genome_strand>
        <mrna_strand>TTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335016" ref_strand="+" ref_description="SGN-E335016 [cTOE-9-G9]">
      <seq>gcccgagcagcagcagcagtgaagggcgggaagacagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggaccagtattatggagattgcttctcttgacaagttcctccaagagagaattaagggttggtggaaaagctggtgccacttggagacttccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaatacccttgtcaaaaagtaccttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgatntttttgtccccttatcagtaaaagaaaacgttacctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95486" stop="92341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95188" g_stop="94962" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92646" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="518" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="529"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E335016" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95188" e_stop="94962"/>
          <exon e_start="92928" e_stop="92646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGA-AGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGAC-AGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAA-GGTTGGTGGAAAAGCTGGTG-CACTTGGAGA-TTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATA-CCTTGTCAAAAAGTA-CTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGAT-TTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTG</genome_strand>
        <mrna_strand>GCCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGACAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACCAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGGTTGGTGGAAAAGCTGGTGCCACTTGGAGACTTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCCTTGTCAAAAAGTACCTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATNTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284720" ref_strand="-" ref_description="SGN-E284720 [cLES-3-J16]">
      <seq>aagggggcaagcttcgtcatcgactgttcgaagccagtgaaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattagggttggtgaaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaccgttactttgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95452" stop="92341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95152" g_stop="94962" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92646" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="474" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="494"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E284720" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95152" e_stop="94962"/>
          <exon e_start="92928" e_stop="92646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTG</genome_strand>
        <mrna_strand>AAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGAAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAGGGTTGGTGAAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAACCGTTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594909" ref_strand="+" ref_description="SGN-E594909 [38171]">
      <seq>cgaattctccctatttgaataacagcagaagagaaataagagtgtaaagatgagccgagcagcagcagcagcagcgaagggcgggaagaagaagggggcaagcttcgtcattgactgttctaagccagtggaggacagtatcatggagattgcctctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcattgtcagtcgtgataagaacaagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatggctattcaatgaccctttatcttcttattttgaaccttatatcatctgtttgagttattaatgagttgtatcttctcatttctagattattgattttttgttcccttatcagtaaaagaaaacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95537" stop="92351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95322" g_stop="95311" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="282" r_length="271" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92651" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="559" r_length="277" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E594909" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95322" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCC--G-AGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTA</genome_strand>
        <mrna_strand>CGAAT-TCTCCC................................................................................TATTTGAATAACAGCAGAAGAGAAAT-AAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGCGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCTAAGCCAGTGGAGGACAGTATCATGGAGATTGCCTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCATTGTCAGTCGTGATAAGAACAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGGCTATTCAATGACCC-TTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGTTGTATCTTCTCATTTCTAGATTATTGATTTTTTGTTCCCTTATCAGTAAAAGAAAACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357774" ref_strand="+" ref_description="SGN-E357774 [cTOS-24-P6]">
      <seq>cctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95530" stop="92389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95312" g_stop="95311" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95230" g_stop="94962" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92928" g_stop="92690" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="510" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E357774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95312" e_stop="95311"/>
          <exon e_start="95230" e_stop="94962"/>
          <exon e_start="92928" e_stop="92690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATT</genome_strand>
        <mrna_strand>CC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285777" ref_strand="+" ref_description="SGN-E285777 [cLES-5-G16]">
      <seq>ttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="95527" stop="92413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95227" g_stop="94962" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92928" g_stop="92713" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="482" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E285777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95227" e_stop="94962"/>
          <exon e_start="92928" e_stop="92713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAG</genome_strand>
        <mrna_strand>TTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215051" ref_strand="+" ref_description="SGN-E215051 [cLEC-78-E14]">
      <seq>gagcattagctagattgtttggctcctcccacttctcagtgaagtagattcttaagtaggcggttgttgatgagaccaattagactgcaacctagcctttcacttgtgtccattagtttgcgtcaagtgcaattttgttgatttcatcttttacatccataatcacacagaatagtacacttggattatgtcaaattacatgtgaaataggcttggaagaactaatatgtattaagtttgtaacttgaaagagataggtaactaacatgtaagcaggcttagttataggtaattgataatattgatcattatagatgctcttgctaactgaaacatccttcagggcgtgtaaagcatattttcatgtattttttgttgggttctgaagaaagtcttcattttttatgtaagtttgatgcagctgagtagaatctatagtggtattcttgtttcacctgatgtatgtttctaagcttgttctggaagtgacatcaaccacttattagcatcaccatttacctagcacatttttggttcaagtgatagtccaaaggctacttgtaaaagaaactgatactctaaagagaacaaatgtccaacatatttatcatattacttttttttttttttgcaatttctgtatgcgcgattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="-" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="94039" stop="92786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93739" g_stop="93086" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="-" ref_id="SGN-E215051" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93739" e_stop="93086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTAC--TTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</genome_strand>
        <mrna_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCACCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAA-CAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243373" ref_strand="+" ref_description="SGN-E243373 [cLEF-16-J10]">
      <seq>tttcaactacaaatctatttgagtattgagttatttttacttcattctgaattagagatttcgaatttgagtcttttgaatataaagagtttttggatccaaatctttttgaaaataaaatatttcgagtttaaatctttgtgcgtatacagtaatttttactttattctaaattagaaattttaaatttaaattttttagtacaaaaaaaaattaaattgcaaattttaatttaatcaaacttcaatataaatataaggttaaaaatccccgaatacacttctcctcatcatatcttatatatttatctatttatatctttctgtatatattccaacttctcaggtccactttatccctctccctgttttccaagaattcaatatcttactatacttttatcgtatcaataatcactttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="99446" stop="100471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99746" g_stop="100171" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E243373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99746" e_stop="100171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</genome_strand>
        <mrna_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537921" ref_strand="+" ref_description="SGN-E537921 [TUS-56-M9]">
      <seq>gccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataaggaggattaatggtttgctggtaggttggttgactattgagaaacataatanaattaaaagtcctatcttggtagtttgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="101214" stop="102295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101514" g_stop="101995" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E537921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101514" e_stop="101995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAG</genome_strand>
        <mrna_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATANAATTAAAAGTCCTATCTTGGTAGTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265769" ref_strand="+" ref_description="SGN-E265769 [cLEI-11-B2]">
      <seq>ccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataacgaggattaatggtttgctggtaggttggttgactattgagaaacataataaaattaaaagtcctatcttggtagtttgatagattaattaagttagcaaattagttgggccctataagtaacctcaattaaagattgcttcacacaccaaaatttgtgggacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="101215" stop="102380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101515" g_stop="102080" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-E265769" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101515" e_stop="102080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</genome_strand>
        <mrna_strand>CCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAACGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAAGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>619</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11009" PGL_stop="7157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11009" e_stop="10523"/>
            <exon e_start="7563" e_stop="7462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="0.996"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="11009" e_stop="10523" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="10522" i_stop="7564" i_length="2959"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="7563" e_stop="7462" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11009" stop="10523"/>
              <exon start="7563" stop="7462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10982" stop="10536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10981" stop="10616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAAAAAAAAACAGAGGAAAATGGAGAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAG : AAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAA</gDNA_template>
            <first_frame> V  K  K  K  T  E  E  N  G  E  N  T  A  Q  N  C  L  R  *  W  N  Q  N  A  R  S  *  N  R  *  R  S  S  S  S  I  S  T  W  L  P  *  V  M  V  F  M  A  P  P  I  A  L  L  F  K  Q  R  L  Q  S  Y  C  A  *  S  S  W  L  R  R  H  *  N  S  I  G  N  Q  *  L  Y  C  F  S  H  C  W  *  F  D  F  S  V  R  Y  S  G  S  R  K  S  V  L  N  W  A  *  L  G  C  S  N  C  L  V  F  L  F  V  S  S  *  S  D  *  S  F  G  E  S  E  L  *  V  T  A  Q  K  S  V  A  K  T  D  *  L  L  E  G  I  A  W  *  *  L  L  H  V  Q  I  S   : E  T  G  S  S  Q  P  Y  L  V  D  A  K  F  K  S  Q  L  S  L  W  W  V  S  W  T  *  H  I  I  F  L  E  S  </first_frame>
            <second_frame>  *  K  K  K  Q  R  K  M  E  K  I  Q  H  K  T  V  S  A  N  G  I  K  M  H  V  A  E  I  G  E  G  P  A  V  L  F  L  H  G  F  P  E  L  W  Y  S  W  R  H  Q  L  L  Y  F  S  N  K  G  Y  R  A  I  A  P  D  L  R  G  Y  G  D  T  E  I  P  S  E  I  S  S  Y  T  A  F  H  I  V  G  D  L  I  S  L  L  D  I  L  D  L  E  K  V  F  L  I  G  H  D  W  G  A  L  I  A  W  F  F  C  L  F  R  P  D  R  I  K  A  L  V  N  L  S  C  E  L  R  P  R  N  P  L  R  K  P  I  D  C  L  R  E  L  L  G  D  D  Y  Y  M  C  R  F  Q  :  K  L  G  A  H  S  P  I  *  W  M  Q  N  S  S  P  N  *  V  C  G  G  *  V  G  L  D  I  *  Y  S  W  N  Q </second_frame>
            <third_frame>   K  K  K  N  R  G  K  W  R  K  Y  S  T  K  L  S  P  L  M  E  S  K  C  T  *  L  K  S  V  K  V  Q  Q  F  Y  F  Y  M  A  S  L  S  Y  G  I  H  G  A  T  N  C  F  T  F  Q  T  K  V  T  E  L  L  R  L  I  F  V  V  T  E  T  L  K  F  H  R  K  S  V  V  I  L  L  F  T  L  L  V  I  *  F  L  C  *  I  F  W  I  *  K  K  C  S  *  L  G  M  I  G  V  L  *  L  L  G  F  S  V  C  F  V  L  I  G  L  K  L  W  *  I  *  V  V  S  Y  G  P  E  I  R  C  E  N  R  L  I  A  *  G  N  C  L  V  M  T  I  T  C  A  D  F  R :   N  W  E  L  T  A  L  F  S  G  C  K  I  Q  V  P  T  K  F  V  V  G  E  L  D  L  T  Y  N  I  P  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11005" stop="10523"/>
                    <exon start="7563" stop="7537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKQRKMEKIQHKTVSANGIKMHVAEIGEGPAVLFLHGFPELWYSWRHQLLYFSNKGYRAIAPDLRGYGDTEIPSEISSYTAFHIVGDLISLLDILDLEKVFLIGHDWGALIAWFFCLFRPDRIKALVNLSCELRPRNPLRKPIDCLRELLGDDYYMCRFQKLGAHSPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10982" e_stop="10523"/>
            <exon e_start="8428" e_stop="8184"/>
            <exon e_start="7563" e_stop="7157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="0.951"/>
          <exon-intron don_prob="0.994" acc_prob="0.985" e_score="0.959"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="10982" e_stop="10523" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10522" i_stop="8429" i_length="2094"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="8428" e_stop="8184" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.985">
            <gDNA_intron_boundary i_start="8183" i_stop="7564" i_length="620"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="7563" e_stop="7157" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10982" stop="10536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10981" stop="10616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10592" stop="10523"/>
              <exon start="8428" stop="8184"/>
              <exon start="7563" stop="7157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599425" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATACAGCACAAAACTGTCTCCGCTAATGGAATCAAAATGCACGTAGCTGAAATCGGTGAAGGTCCAGCAGTTCTATTTCTACATGGCTTCCCTGAGTTATGGTATTCATGGCGCCACCAATTGCTTTACTTTTCAAACAAAGGTTACAGAGCTATTGCGCCTGATCTTCGTGGTTACGGAGACACTGAAATTCCATCGGAAATCAGTAGTTATACTGCTTTTCACATTGTTGGTGATTTGATTTCTCTGTTAGATATTCTGGATCTAGAAAAAGTGTTCTTAATTGGGCATGATTGGGGTGCTCTAATTGCTTGGTTTTTCTGTTTGTTTCGTCCTGATCGGATTAAAGCTTTGGTGAATCTGAGTTGTGAGTTACGGCCCAGAAATCCGTTGCGAAAACCGATTGATTGCTTGAGGGAATTGCTTGGTGATGACTATTACATGTGCAGATTTCAG : AAACCTGGGGAAGTGGAAGAGGAATTTGCTTCAATTGATACTGCAAAACTCATCATAGGATTTCTTTCTTCACGTGATACACGTCCACCTTGCATTCCCAAAGAGATTGGCTTTCATCAGGCCTTTGCTCAGTTACCAGCAGCATTACCTTCATGGCTAACACAAGAAGATGTCAATTATTATGCTGAAAAATTAAACAAAACTGGCTTTACTGGAGGATTGAACTACTATAGAAACATGGACAA : AAACTGGGAGCTCACAGCCCTATTTAGTGGATGCAAAATTCAAGTCCCAACTAAGTTTGTGGTGGGTGAGTTGGACTTGACATATAATATTCCTGGAATCAAGGAGTATATACACAATGGTGGATTCAAGAAAGAAGTTCCAAGTTTAGAGGAAGTTGTTGTAATGGAGGGAGCAGCTCACTTCATCAACCAAGAAAAGCCAGATGAAATAAATGCCCACATTTATGATTTTATTCAAAAGTTTTAATCAACCAATTGGTAGTATCTTTAATTAATTTGGGGTTTTTGGCATAATTTGAAATGTACTTTGTTGAAGTTTGTGACAAATAAGATGCCTAAACAGATTTATCAGCTGAAATTTGAAATTTGATTAATGGATGAATAAGTATTTGCCACTTAGTTAATAA</gDNA_template>
            <first_frame> E  N  T  A  Q  N  C  L  R  *  W  N  Q  N  A  R  S  *  N  R  *  R  S  S  S  S  I  S  T  W  L  P  *  V  M  V  F  M  A  P  P  I  A  L  L  F  K  Q  R  L  Q  S  Y  C  A  *  S  S  W  L  R  R  H  *  N  S  I  G  N  Q  *  L  Y  C  F  S  H  C  W  *  F  D  F  S  V  R  Y  S  G  S  R  K  S  V  L  N  W  A  *  L  G  C  S  N  C  L  V  F  L  F  V  S  S  *  S  D  *  S  F  G  E  S  E  L  *  V  T  A  Q  K  S  V  A  K  T  D  *  L  L  E  G  I  A  W  *  *  L  L  H  V  Q  I  S   : E  T  W  G  S  G  R  G  I  C  F  N  *  Y  C  K  T  H  H  R  I  S  F  F  T  *  Y  T  S  T  L  H  S  Q  R  D  W  L  S  S  G  L  C  S  V  T  S  S  I  T  F  M  A  N  T  R  R  C  Q  L  L  C  *  K  I  K  Q  N  W  L  Y  W  R  I  E  L  L  *  K  H  G  Q  :  K  L  G  A  H  S  P  I  *  W  M  Q  N  S  S  P  N  *  V  C  G  G  *  V  G  L  D  I  *  Y  S  W  N  Q  G  V  Y  T  Q  W  W  I  Q  E  R  S  S  K  F  R  G  S  C  C  N  G  G  S  S  S  L  H  Q  P  R  K  A  R  *  N  K  C  P  H  L  *  F  Y  S  K  V  L  I  N  Q  L  V  V  S  L  I  N  L  G  F  L  A  *  F  E  M  Y  F  V  E  V  C  D  K  *  D  A  *  T  D  L  S  A  E  I  *  N  L  I  N  G  *  I  S  I  C  H  L  V  N   </first_frame>
            <second_frame>  K  I  Q  H  K  T  V  S  A  N  G  I  K  M  H  V  A  E  I  G  E  G  P  A  V  L  F  L  H  G  F  P  E  L  W  Y  S  W  R  H  Q  L  L  Y  F  S  N  K  G  Y  R  A  I  A  P  D  L  R  G  Y  G  D  T  E  I  P  S  E  I  S  S  Y  T  A  F  H  I  V  G  D  L  I  S  L  L  D  I  L  D  L  E  K  V  F  L  I  G  H  D  W  G  A  L  I  A  W  F  F  C  L  F  R  P  D  R  I  K  A  L  V  N  L  S  C  E  L  R  P  R  N  P  L  R  K  P  I  D  C  L  R  E  L  L  G  D  D  Y  Y  M  C  R  F  Q  :  K  P  G  E  V  E  E  E  F  A  S  I  D  T  A  K  L  I  I  G  F  L  S  S  R  D  T  R  P  P  C  I  P  K  E  I  G  F  H  Q  A  F  A  Q  L  P  A  A  L  P  S  W  L  T  Q  E  D  V  N  Y  Y  A  E  K  L  N  K  T  G  F  T  G  G  L  N  Y  Y  R  N  M  D  K :   N  W  E  L  T  A  L  F  S  G  C  K  I  Q  V  P  T  K  F  V  V  G  E  L  D  L  T  Y  N  I  P  G  I  K  E  Y  I  H  N  G  G  F  K  K  E  V  P  S  L  E  E  V  V  V  M  E  G  A  A  H  F  I  N  Q  E  K  P  D  E  I  N  A  H  I  Y  D  F  I  Q  K  F  *  S  T  N  W  *  Y  L  *  L  I  W  G  F  W  H  N  L  K  C  T  L  L  K  F  V  T  N  K  M  P  K  Q  I  Y  Q  L  K  F  E  I  *  L  M  D  E  *  V  F  A  T  *  L  I  </second_frame>
            <third_frame>   K  Y  S  T  K  L  S  P  L  M  E  S  K  C  T  *  L  K  S  V  K  V  Q  Q  F  Y  F  Y  M  A  S  L  S  Y  G  I  H  G  A  T  N  C  F  T  F  Q  T  K  V  T  E  L  L  R  L  I  F  V  V  T  E  T  L  K  F  H  R  K  S  V  V  I  L  L  F  T  L  L  V  I  *  F  L  C  *  I  F  W  I  *  K  K  C  S  *  L  G  M  I  G  V  L  *  L  L  G  F  S  V  C  F  V  L  I  G  L  K  L  W  *  I  *  V  V  S  Y  G  P  E  I  R  C  E  N  R  L  I  A  *  G  N  C  L  V  M  T  I  T  C  A  D  F  R :   N  L  G  K  W  K  R  N  L  L  Q  L  I  L  Q  N  S  S  *  D  F  F  L  H  V  I  H  V  H  L  A  F  P  K  R  L  A  F  I  R  P  L  L  S  Y  Q  Q  H  Y  L  H  G  *  H  K  K  M  S  I  I  M  L  K  N  *  T  K  L  A  L  L  E  D  *  T  T  I  E  T  W  T   : K  T  G  S  S  Q  P  Y  L  V  D  A  K  F  K  S  Q  L  S  L  W  W  V  S  W  T  *  H  I  I  F  L  E  S  R  S  I  Y  T  M  V  D  S  R  K  K  F  Q  V  *  R  K  L  L  *  W  R  E  Q  L  T  S  S  T  K  K  S  Q  M  K  *  M  P  T  F  M  I  L  F  K  S  F  N  Q  P  I  G  S  I  F  N  *  F  G  V  F  G  I  I  *  N  V  L  C  *  S  L  *  Q  I  R  C  L  N  R  F  I  S  *  N  L  K  F  D  *  W  M  N  K  Y  L  P  L  S  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10981" stop="10523"/>
                    <exon start="8428" stop="8184"/>
                    <exon start="7563" stop="7317"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIQHKTVSANGIKMHVAEIGEGPAVLFLHGFPELWYSWRHQLLYFSNKGYRAIAPDLRGYGDTEIPSEISSYTAFHIVGDLISLLDILDLEKVFLIGHDWGALIAWFFCLFRPDRIKALVNLSCELRPRNPLRKPIDCLRELLGDDYYMCRFQKPGEVEEEFASIDTAKLIIGFLSSRDTRPPCIPKEIGFHQAFAQLPAALPSWLTQEDVNYYAEKLNKTGFTGGLNYYRNMDKNWELTALFSGCKIQVPTKFVVGELDLTYNIPGIKEYIHNGGFKKEVPSLEEVVVMEGAAHFINQEKPDEINAHIYDFIQKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12049" PGL_stop="11570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12049" e_stop="11570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="12049" e_stop="11570" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12049" stop="11811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12048" stop="11570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTTAATCTAAATGAACATAATTTCCAAATGAGTATGATATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACTCCTACTTTTATGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGTTTGGACT</gDNA_template>
            <first_frame> S  R  S  D  T  *  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  *  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  L  I  *  M  N  I  I  S  K  *  V  *  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  Q  Y  S  G  Y  Q  G  E  L  M  L  L  V  W  T </first_frame>
            <second_frame>  H  V  P  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  *  S  K  *  T  *  F  P  N  E  Y  D  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  L  L  L  L  C  F  L  L  V  *  L  *  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  S  T  P  D  I  R  V  S  *  C  F  *  F  G   </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  L  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  N  E  H  N  F  Q  M  S  M  I  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  S  Y  F  Y  V  F  F  L  F  N  C  R  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  V  L  R  I  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11785" stop="11570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFDSTVTLASLQYSGYQGELMLLVWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12580" PGL_stop="12176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12580" e_stop="12176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="12580" e_stop="12176" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12580" stop="12176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTTTTACGATATTCGTAATAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGAAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAATATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCAAGAACAGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> E  S  S  V  E  V  G  Y  G  F  F  Y  D  I  R  N  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  K  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  N  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  S  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  Q  E  Q  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  F  T  I  F  V  I  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  *  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  I  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  K  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  E  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  Y  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  V  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21108" PGL_stop="18798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21095" e_stop="21028"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20639"/>
            <exon e_start="19636" e_stop="19454"/>
            <exon e_start="19227" e_stop="18798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21095" e_stop="21028" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20639" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19636" e_stop="19454" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="19227" e_stop="18798" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21095" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21087" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21085" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21080" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21077" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21077" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277272" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21048" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21042" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21040" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20891" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19591" stop="19454"/>
              <exon start="19227" stop="18894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281030" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19459" stop="19454"/>
              <exon start="19227" stop="18853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19194" stop="18798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19165" stop="18836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT : GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</gDNA_template>
            <first_frame> R  T  E  K  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W  L  L  T  *  L  E  R :   R  T  I  L  L  L  L  L  G  L  L  P  M  M  F  E  L  M  K  S  Q  K  S  R  L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L :   F  C  L  G  V  Q  R  T  Q  G  R  P  L  S  T  L  V  K  H  L  V  S  H  T  A  T  Q  S  L  M  F  A  Q  R  E  G  S  L  S  E  Q  E  E  R  E  I  A  E  A  T  R  L  E  E  V  L  V  F  E  C  T  L  I  E  F  L  L  E  V  F  A  N  L  L  L  P  L  I  V  S  C  W  I  F  L  F  Q  L  C  F  S  Y  T  L  Q  H  H  I  A  D  F  *  M  C  Y  L  F  C  K  I  N  L  Y  L  E  T  E  S  L  Q  Q  G  Y  A  W  *  F  I  L  F  Y  T  N  S  S  *  Y  I  F  I  I  S  Y </first_frame>
            <second_frame>  E  Q  K  N  L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F  G  Y  L  H  D  W  K   : G  G  Q  Y  C  C  C  C  W  D  C  Y  R  *  C  S  S  L  *  S  P  K  N  Q  G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H   : C  F  A  *  G  S  K  E  L  K  G  G  R  *  A  L  W  *  S  T  W  C  P  T  Q  P  H  K  A  L  C  S  R  K  G  K  E  V  *  A  S  K  R  K  E  K  *  Q  R  L  Q  G  L  R  K  C  W  C  L  N  A  H  *  *  S  F  Y  *  K  Y  L  P  T  Y  F  Y  H  *  *  Y  L  V  G  F  S  Y  F  N  S  V  S  L  T  H  S  S  I  I  L  L  I  F  E  C  V  I  C  F  A  K  L  I  S  I  *  R  L  N  L  Y  N  K  V  M  L  G  N  L  F  C  F  I  L  I  P  L  N  T  F  L  *  L  A   </second_frame>
            <third_frame>   N  R  K  T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  V  T  Y  M  T  G  K  :  E  D  N  I  A  V  V  V  G  T  V  T  D  D  V  R  A  Y  E  V  P  K  I  K  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  :  V  L  L  R  G  P  K  N  S  R  E  A  V  K  H  F  G  K  A  P  G  V  P  H  S  H  T  K  P  Y  V  R  A  K  G  R  K  F  E  R  A  R  G  K  R  N  S  R  G  Y  K  A  *  G  S  A  G  V  *  M  H  I  D  R  V  S  I  R  S  I  C  Q  P  T  F  T  I  N  S  I  L  L  D  F  L  I  S  T  L  F  L  L  H  T  P  A  S  Y  C  *  F  L  N  V  L  S  V  L  Q  N  *  S  L  F  R  D  *  I  F  T  T  R  L  C  L  V  I  Y  F  V  L  Y  *  F  L  L  I  H  F  Y  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21093" stop="21028"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20639"/>
                    <exon start="19636" stop="19454"/>
                    <exon start="19227" stop="19069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRKTYQQQAAAEESRSSRRSIMGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTYMTGKEDNIAVVVGTVTDDVRAYEVPKIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21108" e_stop="21028"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20639"/>
            <exon e_start="19636" e_stop="19199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21108" e_stop="21028" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20639" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19636" e_stop="19199" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21108" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21095" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21077" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21074" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21067" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277272" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21048" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21040" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCATTCTCCGAACAGAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACTGTACGGAACTTCTCTCTCTCATCAGTTTGCATTTTTATGCCTTTTCTTTCATCAATCAAGTGAATAATTAGAGAATATGCTGTAGTGCTCTTCACTAGTATATAATAACAAACCGAGGTGTTTTTAGAATTGTGGTTTGAATCTCGTCCTGCATAGGAAATGATTATGTATTCATGGTAGAGGTAACATTGGCTAGTCATTTGTTTTGTAATGCTTTCTTGATCAGGTTTTGCTTAGGGGTCCAAAGAACTCAAG</gDNA_template>
            <first_frame> F  F  H  S  P  N  R  K  T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  V  T  Y  M  T  G  K  :  E  D  N  I  A  V  V  V  G  T  V  T  D  D  V  R  A  Y  E  V  P  K  I  K  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  V  R  N  F  S  L  S  S  V  C  I  F  M  P  F  L  S  S  I  K  *  I  I  R  E  Y  A  V  V  L  F  T  S  I  *  *  Q  T  E  V  F  L  E  L  W  F  E  S  R  P  A  *  E  M  I  M  Y  S  W  *  R  *  H  W  L  V  I  C  F  V  M  L  S  *  S  G  F  A  *  G  S  K  E  L  K </first_frame>
            <second_frame>  F  S  I  L  R  T  E  K  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W  L  L  T  *  L  E  R :   R  T  I  L  L  L  L  L  G  L  L  P  M  M  F  E  L  M  K  S  Q  K  S  R  L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L  Y  G  T  S  L  S  H  Q  F  A  F  L  C  L  F  F  H  Q  S  S  E  *  L  E  N  M  L  *  C  S  S  L  V  Y  N  N  K  P  R  C  F  *  N  C  G  L  N  L  V  L  H  R  K  *  L  C  I  H  G  R  G  N  I  G  *  S  F  V  L  *  C  F  L  D  Q  V  L  L  R  G  P  K  N  S   </second_frame>
            <third_frame>   F  P  F  S  E  Q  K  N  L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F  G  Y  L  H  D  W  K   : G  G  Q  Y  C  C  C  C  W  D  C  Y  R  *  C  S  S  L  *  S  P  K  N  Q  G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H  C  T  E  L  L  S  L  I  S  L  H  F  Y  A  F  S  F  I  N  Q  V  N  N  *  R  I  C  C  S  A  L  H  *  Y  I  I  T  N  R  G  V  F  R  I  V  V  *  I  S  S  C  I  G  N  D  Y  V  F  M  V  E  V  T  L  A  S  H  L  F  C  N  A  F  L  I  R  F  C  L  G  V  Q  R  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21108" stop="21028"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20639"/>
                    <exon start="19636" stop="19391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHSPNRKTYQQQAAAEESRSSRRSIMGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTYMTGKEDNIAVVVGTVTDDVRAYEVPKIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRNFSLSSVCIFMPFLSSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21084" e_stop="21025"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20639"/>
            <exon e_start="19636" e_stop="19454"/>
            <exon e_start="19227" e_stop="18798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.933"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="0.989"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="21084" e_stop="21025" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21024" i_stop="20945" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20639" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20638" i_stop="19637" i_length="1002"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19636" e_stop="19454" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="19227" e_stop="18798" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21084" stop="21025"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21068" stop="21025"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21066" stop="21025"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21065" stop="21025"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21061" stop="21025"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="19081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21060" stop="21025"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20891" stop="20855"/>
              <exon start="20767" stop="20639"/>
              <exon start="19636" stop="19454"/>
              <exon start="19227" stop="18900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19591" stop="19454"/>
              <exon start="19227" stop="18894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281030" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19459" stop="19454"/>
              <exon start="19227" stop="18853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19194" stop="18798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19165" stop="18836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATGGTG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTGGTTACTTACATGACTGGAAAG : GAGGACAATATTGCTGTTGTTGTTGGGACTGTTACCGATGATGTTCGAGCTTATGAAGTCCCAAAAATCAAGGTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT : GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</gDNA_template>
            <first_frame> T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  V  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  V  T  Y  M  T  G  K  :  E  D  N  I  A  V  V  V  G  T  V  T  D  D  V  R  A  Y  E  V  P  K  I  K  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  :  V  L  L  R  G  P  K  N  S  R  E  A  V  K  H  F  G  K  A  P  G  V  P  H  S  H  T  K  P  Y  V  R  A  K  G  R  K  F  E  R  A  R  G  K  R  N  S  R  G  Y  K  A  *  G  S  A  G  V  *  M  H  I  D  R  V  S  I  R  S  I  C  Q  P  T  F  T  I  N  S  I  L  L  D  F  L  I  S  T  L  F  L  L  H  T  P  A  S  Y  C  *  F  L  N  V  L  S  V  L  Q  N  *  S  L  F  R  D  *  I  F  T  T  R  L  C  L  V  I  Y  F  V  L  Y  *  F  L  L  I  H  F  Y  N  *  L  </first_frame>
            <second_frame>  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W  L  L  T  *  L  E  R :   R  T  I  L  L  L  L  L  G  L  L  P  M  M  F  E  L  M  K  S  Q  K  S  R  L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L :   F  C  L  G  V  Q  R  T  Q  G  R  P  L  S  T  L  V  K  H  L  V  S  H  T  A  T  Q  S  L  M  F  A  Q  R  E  G  S  L  S  E  Q  E  E  R  E  I  A  E  A  T  R  L  E  E  V  L  V  F  E  C  T  L  I  E  F  L  L  E  V  F  A  N  L  L  L  P  L  I  V  S  C  W  I  F  L  F  Q  L  C  F  S  Y  T  L  Q  H  H  I  A  D  F  *  M  C  Y  L  F  C  K  I  N  L  Y  L  E  T  E  S  L  Q  Q  G  Y  A  W  *  F  I  L  F  Y  T  N  S  S  *  Y  I  F  I  I  S  Y </second_frame>
            <third_frame>   L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H  G   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F  G  Y  L  H  D  W  K   : G  G  Q  Y  C  C  C  C  W  D  C  Y  R  *  C  S  S  L  *  S  P  K  N  Q  G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H   : C  F  A  *  G  S  K  E  L  K  G  G  R  *  A  L  W  *  S  T  W  C  P  T  Q  P  H  K  A  L  C  S  R  K  G  K  E  V  *  A  S  K  R  K  E  K  *  Q  R  L  Q  G  L  R  K  C  W  C  L  N  A  H  *  *  S  F  Y  *  K  Y  L  P  T  Y  F  Y  H  *  *  Y  L  V  G  F  S  Y  F  N  S  V  S  L  T  H  S  S  I  I  L  L  I  F  E  C  V  I  C  F  A  K  L  I  S  I  *  R  L  N  L  Y  N  K  V  M  L  G  N  L  F  C  F  I  L  I  P  L  N  T  F  L  *  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21084" stop="21025"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20639"/>
                    <exon start="19636" stop="19454"/>
                    <exon start="19227" stop="19069"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYQQQAAAEESRSSRRSIMVGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTYMTGKEDNIAVVVGTVTDDVRAYEVPKIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="21089" e_stop="21028"/>
            <exon e_start="20944" e_stop="20855"/>
            <exon e_start="20767" e_stop="20660"/>
            <exon e_start="19564" e_stop="19454"/>
            <exon e_start="19227" e_stop="18798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.525" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21089" e_stop="21028" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21027" i_stop="20945" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20944" e_stop="20855" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.785">
            <gDNA_intron_boundary i_start="20854" i_stop="20768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20767" e_stop="20660" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.525" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20659" i_stop="19565" i_length="1095"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19564" e_stop="19454" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19453" i_stop="19228" i_length="226"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="19227" e_stop="18798" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21089" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20660"/>
              <exon start="19564" stop="19454"/>
              <exon start="19227" stop="18891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21089" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20660"/>
              <exon start="19564" stop="19454"/>
              <exon start="19227" stop="18892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21088" stop="21028"/>
              <exon start="20944" stop="20855"/>
              <exon start="20767" stop="20660"/>
              <exon start="19564" stop="19454"/>
              <exon start="19227" stop="19107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19459" stop="19454"/>
              <exon start="19227" stop="18853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19194" stop="18798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19165" stop="18836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACCTATCAGCAGCAGGCGGCGGCGGAGGAAAGTAGAAGCAGCAGGCGGAGCATCATG : GGTATCGATCTAGTTGCCGGAGGTAAGTCCAAAAAGACTAAGCGCATTGCACCAAAATCCGACGATGTTTATCTCAAGCTTCTCGTCAAG : TTGTACCGATTTCTATCACGGAGGACTGGTAGTAAGTTCAATGCTGTGATACTGAAGAGACTCTTCATGAGCAAGATCAATAAAGCTCCATTGTCTCTATCACGTTTG : GTTACTGCATTGAGATTCACGGAAACAGCTAGAGCTAGGATTGAGAAGGCTGGAGGAGAATGTTTGACCTTTGATCAGCTTGCTCTCAGAGCCCCTCTTGGGCAGAACACT : GTTTTGCTTAGGGGTCCAAAGAACTCAAGGGAGGCCGTTAAGCACTTTGGTAAAGCACCTGGTGTCCCACACAGCCACACAAAGCCTTATGTTCGCGCAAAGGGAAGGAAGTTTGAGCGAGCAAGAGGAAAGAGAAATAGCAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATAGAGTTTCTATTAGAAGTATTTGCCAACCTACTTTTACCATTAATAGTATCTTGTTGGATTTTCTTATTTCAACTCTGTTTCTCTTACACACTCCAGCATCATATTGCTGATTTTTGAATGTGTTATCTGTTTTGCAAAATTAATCTCTATTTAGAGACTGAATCTTTACAACAAGGTTATGCTTGGTAATTTATTTTGTTTTATACTAATTCCTCTTAATACATTTTTATAATTAGCTAT</gDNA_template>
            <first_frame> E  K  P  I  S  S  R  R  R  R  R  K  V  E  A  A  G  G  A  S  W :   V  S  I  *  L  P  E  V  S  P  K  R  L  S  A  L  H  Q  N  P  T  M  F  I  S  S  F  S  S  S :   C  T  D  F  Y  H  G  G  L  V  V  S  S  M  L  *  Y  *  R  D  S  S  *  A  R  S  I  K  L  H  C  L  Y  H  V  W :   L  L  H  *  D  S  R  K  Q  L  E  L  G  L  R  R  L  E  E  N  V  *  P  L  I  S  L  L  S  E  P  L  L  G  R  T  L :   F  C  L  G  V  Q  R  T  Q  G  R  P  L  S  T  L  V  K  H  L  V  S  H  T  A  T  Q  S  L  M  F  A  Q  R  E  G  S  L  S  E  Q  E  E  R  E  I  A  E  A  T  R  L  E  E  V  L  V  F  E  C  T  L  I  E  F  L  L  E  V  F  A  N  L  L  L  P  L  I  V  S  C  W  I  F  L  F  Q  L  C  F  S  Y  T  L  Q  H  H  I  A  D  F  *  M  C  Y  L  F  C  K  I  N  L  Y  L  E  T  E  S  L  Q  Q  G  Y  A  W  *  F  I  L  F  Y  T  N  S  S  *  Y  I  F  I  I  S  Y </first_frame>
            <second_frame>  K  N  L  S  A  A  G  G  G  G  G  K  *  K  Q  Q  A  E  H  H   : G  Y  R  S  S  C  R  R  *  V  Q  K  D  *  A  H  C  T  K  I  R  R  C  L  S  Q  A  S  R  Q   : V  V  P  I  S  I  T  E  D  W  *  *  V  Q  C  C  D  T  E  E  T  L  H  E  Q  D  Q  *  S  S  I  V  S  I  T  F   : G  Y  C  I  E  I  H  G  N  S  *  S  *  D  *  E  G  W  R  R  M  F  D  L  *  S  A  C  S  Q  S  P  S  W  A  E  H   : C  F  A  *  G  S  K  E  L  K  G  G  R  *  A  L  W  *  S  T  W  C  P  T  Q  P  H  K  A  L  C  S  R  K  G  K  E  V  *  A  S  K  R  K  E  K  *  Q  R  L  Q  G  L  R  K  C  W  C  L  N  A  H  *  *  S  F  Y  *  K  Y  L  P  T  Y  F  Y  H  *  *  Y  L  V  G  F  S  Y  F  N  S  V  S  L  T  H  S  S  I  I  L  L  I  F  E  C  V  I  C  F  A  K  L  I  S  I  *  R  L  N  L  Y  N  K  V  M  L  G  N  L  F  C  F  I  L  I  P  L  N  T  F  L  *  L  A   </second_frame>
            <third_frame>   K  T  Y  Q  Q  Q  A  A  A  E  E  S  R  S  S  R  R  S  I  M  :  G  I  D  L  V  A  G  G  K  S  K  K  T  K  R  I  A  P  K  S  D  D  V  Y  L  K  L  L  V  K  :  L  Y  R  F  L  S  R  R  T  G  S  K  F  N  A  V  I  L  K  R  L  F  M  S  K  I  N  K  A  P  L  S  L  S  R  L  :  V  T  A  L  R  F  T  E  T  A  R  A  R  I  E  K  A  G  G  E  C  L  T  F  D  Q  L  A  L  R  A  P  L  G  Q  N  T  :  V  L  L  R  G  P  K  N  S  R  E  A  V  K  H  F  G  K  A  P  G  V  P  H  S  H  T  K  P  Y  V  R  A  K  G  R  K  F  E  R  A  R  G  K  R  N  S  R  G  Y  K  A  *  G  S  A  G  V  *  M  H  I  D  R  V  S  I  R  S  I  C  Q  P  T  F  T  I  N  S  I  L  L  D  F  L  I  S  T  L  F  L  L  H  T  P  A  S  Y  C  *  F  L  N  V  L  S  V  L  Q  N  *  S  L  F  R  D  *  I  F  T  T  R  L  C  L  V  I  Y  F  V  L  Y  *  F  L  L  I  H  F  Y  N  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21087" stop="21028"/>
                    <exon start="20944" stop="20855"/>
                    <exon start="20767" stop="20660"/>
                    <exon start="19564" stop="19454"/>
                    <exon start="19227" stop="19069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTYQQQAAAEESRSSRRSIMGIDLVAGGKSKKTKRIAPKSDDVYLKLLVKLYRFLSRRTGSKFNAVILKRLFMSKINKAPLSLSRLVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23972" PGL_stop="24728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23972" e_stop="24728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="23972" e_stop="24728" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23972" stop="24728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACGGCCCCGTCGTTCTAGCAGTTACTCTTTTTAACGGTGACAGTAGATACACAGCTGGCGATGAACACGTCGAAGATGCGCCGGAAAGTTGTTCCGGCGGTAGAAAACGGAGACTCCGCCGACAAACTTGACCAGGTCCTCCTATCCGCCGCCATCTGCAACGGTGAAGATGTTGGGCCTTTCGTGCGTAAGGGTTTTGCTTCCGGTAAGCCGGAGACAGTACTTCTTCATCTCCGTCACTTTGCTCGATCGAAGGAATCTGAAATTGAAGATGTATGTAGAGCACACTACGAGGACTTCATCACCGCCGTTGACGATCTCCGATCTCTGCTCTCCGATGTTGATTCTCTTAAATCGTCCCTGTCAAACTCGAACAGTCAACTTCAGTCCGTTGCTGTGCCTTTGCTAACCACTCTTGACTCATTCGTTGAAGCTCGAAACAAATGCAAAAACATTACTCTTGCTATTCAATCGCTTCGGACTTGCGTTCAGCTTGTCGAGCTTTGCTCCCGAGCCAATCGTCATCTTTCAGAGAATAATTTTTACATGGCGTTGAAGTGTGTGGACTCGATTGAGAGAGAGTTTATGAACAAAACACCATCTACTACTCTCAGGCGAATGCTTGAGAAGCAGATCCCTGCGATTCGTTCACATATTGAACGGAGAATCACCAAAGAGTTTGGTGATTGGCTTGTCGAGATCCGTGTAGTTAGCCGAAATTTAGGGCAACTAGCTATCGGACAAGCATCAGCATC</gDNA_template>
            <first_frame> *  R  P  R  R  S  S  S  Y  S  F  *  R  *  Q  *  I  H  S  W  R  *  T  R  R  R  C  A  G  K  L  F  R  R  *  K  T  E  T  P  P  T  N  L  T  R  S  S  Y  P  P  P  S  A  T  V  K  M  L  G  L  S  C  V  R  V  L  L  P  V  S  R  R  Q  Y  F  F  I  S  V  T  L  L  D  R  R  N  L  K  L  K  M  Y  V  E  H  T  T  R  T  S  S  P  P  L  T  I  S  D  L  C  S  P  M  L  I  L  L  N  R  P  C  Q  T  R  T  V  N  F  S  P  L  L  C  L  C  *  P  L  L  T  H  S  L  K  L  E  T  N  A  K  T  L  L  L  L  F  N  R  F  G  L  A  F  S  L  S  S  F  A  P  E  P  I  V  I  F  Q  R  I  I  F  T  W  R  *  S  V  W  T  R  L  R  E  S  L  *  T  K  H  H  L  L  L  S  G  E  C  L  R  S  R  S  L  R  F  V  H  I  L  N  G  E  S  P  K  S  L  V  I  G  L  S  R  S  V  *  L  A  E  I  *  G  N  *  L  S  D  K  H  Q  H  </first_frame>
            <second_frame>  N  G  P  V  V  L  A  V  T  L  F  N  G  D  S  R  Y  T  A  G  D  E  H  V  E  D  A  P  E  S  C  S  G  G  R  K  R  R  L  R  R  Q  T  *  P  G  P  P  I  R  R  H  L  Q  R  *  R  C  W  A  F  R  A  *  G  F  C  F  R  *  A  G  D  S  T  S  S  S  P  S  L  C  S  I  E  G  I  *  N  *  R  C  M  *  S  T  L  R  G  L  H  H  R  R  *  R  S  P  I  S  A  L  R  C  *  F  S  *  I  V  P  V  K  L  E  Q  S  T  S  V  R  C  C  A  F  A  N  H  S  *  L  I  R  *  S  S  K  Q  M  Q  K  H  Y  S  C  Y  S  I  A  S  D  L  R  S  A  C  R  A  L  L  P  S  Q  S  S  S  F  R  E  *  F  L  H  G  V  E  V  C  G  L  D  *  E  R  V  Y  E  Q  N  T  I  Y  Y  S  Q  A  N  A  *  E  A  D  P  C  D  S  F  T  Y  *  T  E  N  H  Q  R  V  W  *  L  A  C  R  D  P  C  S  *  P  K  F  R  A  T  S  Y  R  T  S  I  S  I </second_frame>
            <third_frame>   T  A  P  S  F  *  Q  L  L  F  L  T  V  T  V  D  T  Q  L  A  M  N  T  S  K  M  R  R  K  V  V  P  A  V  E  N  G  D  S  A  D  K  L  D  Q  V  L  L  S  A  A  I  C  N  G  E  D  V  G  P  F  V  R  K  G  F  A  S  G  K  P  E  T  V  L  L  H  L  R  H  F  A  R  S  K  E  S  E  I  E  D  V  C  R  A  H  Y  E  D  F  I  T  A  V  D  D  L  R  S  L  L  S  D  V  D  S  L  K  S  S  L  S  N  S  N  S  Q  L  Q  S  V  A  V  P  L  L  T  T  L  D  S  F  V  E  A  R  N  K  C  K  N  I  T  L  A  I  Q  S  L  R  T  C  V  Q  L  V  E  L  C  S  R  A  N  R  H  L  S  E  N  N  F  Y  M  A  L  K  C  V  D  S  I  E  R  E  F  M  N  K  T  P  S  T  T  L  R  R  M  L  E  K  Q  I  P  A  I  R  S  H  I  E  R  R  I  T  K  E  F  G  D  W  L  V  E  I  R  V  V  S  R  N  L  G  Q  L  A  I  G  Q  A  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23992" stop="24726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLFLTVTVDTQLAMNTSKMRRKVVPAVENGDSADKLDQVLLSAAICNGEDVGPFVRKGFASGKPETVLLHLRHFARSKESEIEDVCRAHYEDFITAVDDLRSLLSDVDSLKSSLSNSNSQLQSVAVPLLTTLDSFVEARNKCKNITLAIQSLRTCVQLVELCSRANRHLSENNFYMALKCVDSIEREFMNKTPSTTLRRMLEKQIPAIRSHIERRITKEFGDWLVEIRVVSRNLGQLAIGQASA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25445" PGL_stop="26728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25445" e_stop="26728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="25445" e_stop="26728" e_length="1284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25445" stop="25830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25463" stop="26170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25522" stop="25972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25591" stop="26304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25591" stop="25966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25736" stop="26475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25757" stop="26366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25757" stop="25981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25921" stop="26553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25997" stop="26623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26022" stop="26498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26043" stop="26623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26222" stop="26728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTATT</gDNA_template>
            <first_frame> S  S  Y  R  R  Q  I  L  C  L  H  F  L  M  L  H  R  F  R  V  R  C  L  I  A  V  E  *  C  G  P  L  S  R  I  Q  L  V  L  C  H  M  V  V  S  L  I  S  M  M  W  *  R  S  T  W  I  G  F  *  L  K  S  W  M  E  P  C  *  S  S  F  I  R  L  S  V  V  L  P  K  Q  C  R  W  Q  L  T  W  L  C  L  N  A  L  V  I  F  S  F  V  M  L  H  S  F  Q  G  F  H  *  E  W  Q  R  G  G  G  D  C  S  L  *  L  K  P  A  M  L  L  K  R  C  F  Q  V  C  L  S  K  R  L  M  G  S  F  C  *  L  R  M  *  I  G  W  P  M  I  L  Y  R  V  E  M  N  M  C  M  R  *  L  F  F  L  K  H  *  L  L  L  P  S  K  Y  C  L  F  K  F  *  R  E  F  C  K  M  F  C  V  I  Y  Q  R  *  L  L  G  L  Y  W  G  N  Q  L  K  G  S  T  *  M  L  L  W  L  L  M  L  I  S  V  C  W  N  H  L  L  K  T  K  L  L  S  Y  L  K  Q  M  L  V  S  *  K  Q  H  W  A  S  P  G  S  W  L  I  Y  S  *  A  I  T  R  K  I  S  *  I  Q  L  L  E  R  E  V  I  M  L  W  T  T  A  K  L  L  L  S  R  K  R  *  R  I  K  V  T  D  F  L  G  L  L  A  Q  G  E  L  S  R  T  L  K  R  N  L  L  M  H  *  L  K  D  *  R  T  S  T  E  S  A  N  L  C  M  L  C  S  L  G  R  S  P  Y  C  S  C  V  D  Y  L  L  I  S  Y  L  A  S  F  F  S  A  N  C  L  P  F  Y  V  I  F  S  S  P  S  S  T  L  I  A  V  L  F  F  R  A  Y  I  F  F  C  N  S  D  I  V  F  L  S  H  E  T  S  L  F  S  F  G  F  F  F  R  R  I  I  T  S  S  L  R  F  I </first_frame>
            <second_frame>  P  V  T  D  V  K  Y  Y  A  C  I  S  L  C  C  T  V  F  V  Y  G  A  *  L  L  *  N  S  A  V  L  Y  R  G  F  S  *  F  Y  V  T  W  W  S  A  *  F  L  *  C  G  E  E  V  L  G  S  A  F  N  *  S  P  G  W  S  P  V  E  A  H  S  Y  V  Y  R  W  C  Y  P  S  N  A  D  G  S  *  H  G  C  V  *  T  R  L  *  F  F  L  S  S  C  C  T  A  F  R  D  S  I  E  N  G  R  E  G  E  E  T  V  P  F  D  *  S  P  R  C  C  *  R  D  A  F  R  S  A  *  A  K  G  *  W  V  P  F  V  D  *  E  C  E  L  D  G  R  *  S  S  T  E  W  K  *  I  C  A  *  G  D  Y  F  S  *  N  T  N  F  Y  C  P  A  N  I  A  C  S  S  S  E  E  S  F  A  R  C  S  V  S  Y  I  R  D  D  C  W  G  F  T  G  G  I  S  *  K  V  Q  R  E  C  C  Y  G  S  *  C  *  Y  P  Y  V  G  I  I  C  *  K  P  S  S  S  P  I  *  S  R  C  *  S  A  E  S  S  I  G  R  V  Q  A  V  G  *  S  T  L  K  Q  S  P  G  K  F  P  E  S  S  Y  *  R  E  K  L  *  C  F  G  L  P  Q  S  C  Y  Y  L  G  K  D  E  G  S  K  *  Q  T  F  W  V  F  W  H  K  G  S  *  A  E  H  *  K  E  I  S  *  C  I  N  *  K  I  E  G  R  Q  L  S  L  R  I  S  V  C  Y  V  P  *  G  D  L  H  I  V  V  V  L  I  T  C  *  F  H  I  *  L  P  F  F  L  Q  I  A  Y  H  F  T  *  F  F  P  P  L  V  P  H  *  L  L  Y  Y  S  S  E  H  T  Y  S  F  A  T  Q  I  *  S  F  Y  L  M  K  L  V  S  S  R  L  A  S  F  S  V  E  *  L  H  L  L  F  D  L   </second_frame>
            <third_frame>   Q  L  Q  T  S  N  I  M  P  A  F  P  Y  V  A  P  F  S  C  T  V  P  D  C  C  R  I  V  R  S  F  I  E  D  S  V  S  F  M  S  H  G  G  Q  L  D  F  Y  D  V  V  K  K  Y  L  D  R  L  L  T  E  V  L  D  G  A  L  L  K  L  I  H  T  S  I  G  G  V  T  Q  A  M  Q  M  A  A  N  M  A  V  F  E  R  A  C  D  F  F  F  R  H  A  A  Q  L  S  G  I  P  L  R  M  A  E  R  G  R  R  L  F  P  L  T  K  A  R  D  A  A  E  E  M  L  S  G  L  L  K  Q  K  V  D  G  F  L  L  L  I  E  N  V  N  W  M  A  D  D  P  L  Q  S  G  N  E  Y  V  H  E  V  I  I  F  L  E  T  L  T  S  T  A  Q  Q  I  L  P  V  Q  V  L  K  R  V  L  Q  D  V  L  C  H  I  S  E  M  I  V  G  A  L  L  G  E  S  V  K  R  F  N  V  N  A  V  M  A  L  D  V  D  I  R  M  L  E  S  F  A  E  N  Q  A  P  L  L  S  E  A  D  A  S  Q  L  K  A  A  L  G  E  S  R  Q  L  V  N  L  L  L  S  N  H  P  E  N  F  L  N  P  V  I  R  E  R  S  Y  N  A  L  D  Y  R  K  V  V  T  I  S  E  K  M  K  D  Q  S  D  R  L  F  G  S  F  G  T  R  G  A  K  Q  N  T  K  K  K  S  L  D  A  L  I  K  R  L  K  D  V  N  *  V  C  E  S  L  Y  V  M  F  L  R  E  I  S  I  L  *  L  C  *  L  L  A  D  F  I  S  S  F  L  F  F  C  K  L  P  T  I  L  R  N  F  F  L  P  *  F  H  I  D  C  C  I  I  L  Q  S  I  H  I  L  L  Q  L  R  Y  S  L  F  I  S  *  N  *  S  L  L  V  W  L  L  F  P  *  N  N  Y  I  F  S  S  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25447" stop="26448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTSNIMPAFPYVAPFSCTVPDCCRIVRSFIEDSVSFMSHGGQLDFYDVVKKYLDRLLTEVLDGALLKLIHTSIGGVTQAMQMAANMAVFERACDFFFRHAAQLSGIPLRMAERGRRLFPLTKARDAAEEMLSGLLKQKVDGFLLLIENVNWMADDPLQSGNEYVHEVIIFLETLTSTAQQILPVQVLKRVLQDVLCHISEMIVGALLGESVKRFNVNAVMALDVDIRMLESFAENQAPLLSEADASQLKAALGESRQLVNLLLSNHPENFLNPVIRERSYNALDYRKVVTISEKMKDQSDRLFGSFGTRGAKQNTKKKSLDALIKRLKDVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26435" stop="26728"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSTESANLCMLCSLGRSPYCSCVDYLLISYLASFFSANCLPFYVIFSSPSSTLIAVLFFRAYIFFCNSDIVFLSHETSLFSFGFFFRRIITSSLRFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="27255" PGL_stop="27985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27255" e_stop="27985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="27255" e_stop="27985" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27255" stop="27857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27302" stop="27985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTATAAAAAAAAACGGTGAACTTTGGAACAACGAAAAACATCAATGTTCACAGAAATGTCAATAGCTTCAACAAGAAGTATTTTTTACCTCTTTCTCTTCTTTTTTGCCACTGCAGTTTCAAGAAATGAGAAGCTATCAGCTTATGAAGAGCTACAGCGTTATGATTTCCCAATGGGGATTCTTCCAAAAGGAGTAAAAGACTACAAATTAAACCCCAAAACAGGTGAATTCTCAGCTTATCTTAATTCTACCTGCAGCTTCAAATTGGAGAACTCATATCAACTGAATTACAAGCCTGTTATAAAAGGAGTTATATCTAAAGGCAGGCTTAGGAAACTGTGTGGTGTTAGTGTAAAGGTGGTGTTGCTATGGCTTAACATTGTTGAAGTTAACAGAAAAGGTAAGAATCTTGAGTTTTCAGTTGGACTCGCTTCGGCGAATTTTCCGGTTGAGAATTTTGAGGAATGTCCACAGTGTGGACGTGGATTGAATTGTGTTGATGAAGATGACAATGTTGTGTCTTCCTTTTAACTACTTTGATTGAAATCTAGTTGTTTTTTTTTTTTTGTTTTCTGGTGGTGGAAATGATGTGTTTTTTTGAATAGCTATGGTATTTAGGGCTATTTGATCACGAAATATGTATCTTATGCAACGAAGATTTTGGATTTGAACTTTGTGTATAGATAATATTGTTAACGAGTTTATGGTTCATTACGTTAATCACTCGA</gDNA_template>
            <first_frame> P  Y  K  K  K  R  *  T  L  E  Q  R  K  T  S  M  F  T  E  M  S  I  A  S  T  R  S  I  F  Y  L  F  L  F  F  F  A  T  A  V  S  R  N  E  K  L  S  A  Y  E  E  L  Q  R  Y  D  F  P  M  G  I  L  P  K  G  V  K  D  Y  K  L  N  P  K  T  G  E  F  S  A  Y  L  N  S  T  C  S  F  K  L  E  N  S  Y  Q  L  N  Y  K  P  V  I  K  G  V  I  S  K  G  R  L  R  K  L  C  G  V  S  V  K  V  V  L  L  W  L  N  I  V  E  V  N  R  K  G  K  N  L  E  F  S  V  G  L  A  S  A  N  F  P  V  E  N  F  E  E  C  P  Q  C  G  R  G  L  N  C  V  D  E  D  D  N  V  V  S  S  F  *  L  L  *  L  K  S  S  C  F  F  F  F  V  F  W  W  W  K  *  C  V  F  L  N  S  Y  G  I  *  G  Y  L  I  T  K  Y  V  S  Y  A  T  K  I  L  D  L  N  F  V  Y  R  *  Y  C  *  R  V  Y  G  S  L  R  *  S  L   </first_frame>
            <second_frame>  L  I  K  K  N  G  E  L  W  N  N  E  K  H  Q  C  S  Q  K  C  Q  *  L  Q  Q  E  V  F  F  T  S  F  S  S  F  L  P  L  Q  F  Q  E  M  R  S  Y  Q  L  M  K  S  Y  S  V  M  I  S  Q  W  G  F  F  Q  K  E  *  K  T  T  N  *  T  P  K  Q  V  N  S  Q  L  I  L  I  L  P  A  A  S  N  W  R  T  H  I  N  *  I  T  S  L  L  *  K  E  L  Y  L  K  A  G  L  G  N  C  V  V  L  V  *  R  W  C  C  Y  G  L  T  L  L  K  L  T  E  K  V  R  I  L  S  F  Q  L  D  S  L  R  R  I  F  R  L  R  I  L  R  N  V  H  S  V  D  V  D  *  I  V  L  M  K  M  T  M  L  C  L  P  F  N  Y  F  D  *  N  L  V  V  F  F  F  L  F  S  G  G  G  N  D  V  F  F  *  I  A  M  V  F  R  A  I  *  S  R  N  M  Y  L  M  Q  R  R  F  W  I  *  T  L  C  I  D  N  I  V  N  E  F  M  V  H  Y  V  N  H  S  </second_frame>
            <third_frame>   L  *  K  K  T  V  N  F  G  T  T  K  N  I  N  V  H  R  N  V  N  S  F  N  K  K  Y  F  L  P  L  S  L  L  F  C  H  C  S  F  K  K  *  E  A  I  S  L  *  R  A  T  A  L  *  F  P  N  G  D  S  S  K  R  S  K  R  L  Q  I  K  P  Q  N  R  *  I  L  S  L  S  *  F  Y  L  Q  L  Q  I  G  E  L  I  S  T  E  L  Q  A  C  Y  K  R  S  Y  I  *  R  Q  A  *  E  T  V  W  C  *  C  K  G  G  V  A  M  A  *  H  C  *  S  *  Q  K  R  *  E  S  *  V  F  S  W  T  R  F  G  E  F  S  G  *  E  F  *  G  M  S  T  V  W  T  W  I  E  L  C  *  *  R  *  Q  C  C  V  F  L  L  T  T  L  I  E  I  *  L  F  F  F  F  C  F  L  V  V  E  M  M  C  F  F  E  *  L  W  Y  L  G  L  F  D  H  E  I  C  I  L  C  N  E  D  F  G  F  E  L  C  V  *  I  I  L  L  T  S  L  W  F  I  T  L  I  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27276" stop="27788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEQRKTSMFTEMSIASTRSIFYLFLFFFATAVSRNEKLSAYEELQRYDFPMGILPKGVKDYKLNPKTGEFSAYLNSTCSFKLENSYQLNYKPVIKGVISKGRLRKLCGVSVKVVLLWLNIVEVNRKGKNLEFSVGLASANFPVENFEECPQCGRGLNCVDEDDNVVSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="33177" PGL_stop="33597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33177" e_stop="33597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33177" e_stop="33597" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33177" stop="33597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTTCTCCGGTCATCGGCGATGAGGATTCTCAGTCCCCGACGGCATACGAGATTCTACAGGAATACGATATTCCGGCAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATGATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGGCTTGCGAACTTGAAAGGCGTACAGGTGAAACTGCTTTTTTTTTTTGTCAATATTGTGGGAGTTACTCGTGACGGCGATGATCTCGGTTTCTCCGTCGGTGTTTCTTCTGTTGATTTTGCAATTGAGTACTTCTATGAACCGCCAGAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAACGGTACT</gDNA_template>
            <first_frame> S  F  S  G  H  R  R  *  G  F  S  V  P  D  G  I  R  D  S  T  G  I  R  Y  S  G  R  D  T  S  E  G  R  N  K  V  R  T  R  Q  N  N  G  Q  F  R  R  L  L  *  Q  I  V  Q  F  Q  H  K  R  L  *  S  Q  V  Y  E  *  N  Y  W  *  N  L  *  G  S  A  C  E  L  E  R  R  T  G  E  T  A  F  F  F  C  Q  Y  C  G  S  Y  S  *  R  R  *  S  R  F  L  R  R  C  F  F  C  *  F  C  N  *  V  L  L  *  T  A  R  V  W  M  W  I  *  L  C  Q  F  W  R  K  R  Y  </first_frame>
            <second_frame>  A  S  P  V  I  G  D  E  D  S  Q  S  P  T  A  Y  E  I  L  Q  E  Y  D  I  P  A  G  I  L  P  K  G  V  T  R  Y  E  L  D  K  T  T  G  N  F  A  V  Y  F  N  K  S  C  S  F  S  I  S  G  Y  D  L  K  Y  M  S  K  I  T  G  K  I  S  K  D  R  L  A  N  L  K  G  V  Q  V  K  L  L  F  F  F  V  N  I  V  G  V  T  R  D  G  D  D  L  G  F  S  V  G  V  S  S  V  D  F  A  I  E  Y  F  Y  E  P  P  E  C  G  C  G  F  D  C  V  N  S  G  E  N  G  T </second_frame>
            <third_frame>   L  L  R  S  S  A  M  R  I  L  S  P  R  R  H  T  R  F  Y  R  N  T  I  F  R  Q  G  Y  F  R  R  A  *  Q  G  T  N  S  T  K  Q  R  A  I  S  P  F  T  L  T  N  R  A  V  S  A  *  A  A  M  I  S  S  I  *  V  K  L  L  V  K  S  L  R  I  G  L  R  T  *  K  A  Y  R  *  N  C  F  F  F  L  S  I  L  W  E  L  L  V  T  A  M  I  S  V  S  P  S  V  F  L  L  L  I  L  Q  L  S  T  S  M  N  R  Q  S  V  D  V  D  L  I  V  S  I  L  E  K  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33178" stop="33597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASPVIGDEDSQSPTAYEILQEYDIPAGILPKGVTRYELDKTTGNFAVYFNKSCSFSISGYDLKYMSKITGKISKDRLANLKGVQVKLLFFFVNIVGVTRDGDDLGFSVGVSSVDFAIEYFYEPPECGCGFDCVNSGENGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="35731" PGL_stop="36178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35731" e_stop="36178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="35731" e_stop="36178" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35731" stop="36052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35731" stop="36016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35732" stop="36178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATACTTTTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAACAGAAATAAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGAGGAGAGACGCTGGCAAATTTTAGCTAATGTTTACTATGGAGCACAATTAAATCAAACCCTAGTTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  I  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  L  F  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  E  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  G  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  I  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  Y  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  N  I  Q  F  S  L  A  L  Y  K  T  E  I  K  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  E  E  R  R  W  Q  I  L  A  N  V  Y  Y  G  A  Q  L  N  Q  T  L  V  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  Y  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  T  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  *  I  Y  N  F  L  S  L  Y  T  K  Q  K  *  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  R  R  D  A  G  K  F  *  L  M  F  T  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35918" stop="36178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLHVNIQFSLALYKTEIKLYTSVYKAREASENGEWRARFLEERRWQILANVYYGAQLNQTLVIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45396" PGL_stop="46191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45396" e_stop="46191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="45396" e_stop="46191" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45396" stop="45975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45401" stop="45958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45408" stop="45837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45418" stop="46191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAACTACGAACAAGATATGCCTTCTGTAGCCCTTCCCTTATGCATCCTCCTACTCCTACTCCAACTCTCTGCAGCTTCACCGGTCGTCGGCGATGAGGATTCTCAGTCCCCGACGGCGTATGAGATTCTTCAGGAATACGACTTTCCGGTAGGGATACTTCCGAAGGGCGTAACAAGGTACGAACTCGACAAAACAACGGGCAATTTCGCCGTTTACTTTAACAAATCGTGCAGTTTCAGCATAAGCGGCTATAATCTCAAGTATATGAGTAAAATTACTGGTAAAATCTCTAAGGATCGACTTGCGAACTTGAAAGGCGTACAGGTGAAAGTGCTTTTGTTTTGGATTAATATTGTCGAAGTTACTCGTGACGGCGACGATCTCGATTTCTCCGTCGGTATTGCTTCTGCTGATTTTGCAATTGATAACTTCTATGAATCGCCACAGTGTGGATGTGGATTTGATTGTGTCAATTCTGGAGAAAATGGCACAGGTAAGTTCGATTTGAAGCTGCTTATCACTTCGTCTTGAATCGTAAATTTTCAGAAATCGACTGTAGATTAAGATGTTTTAGGATGAAAATTAAGATGAAATGTATGGTCCATTTTGGAATTAGGGTAAGTTCGTATTTTCAGAATCCCACGGAACTGGAAGCATATGTTTTTTTATGCTCCTTTGGAATGAATATGTATTTTGTCATGTATCTTCTGTGGAGCTTCATCTATGCAGTAGTAGTGCTACTTTTTCTACTTGTGGAGTTTGAAATAAAAATTTCTGTTAAGCACATTGACGA</gDNA_template>
            <first_frame> G  N  Y  E  Q  D  M  P  S  V  A  L  P  L  C  I  L  L  L  L  L  Q  L  S  A  A  S  P  V  V  G  D  E  D  S  Q  S  P  T  A  Y  E  I  L  Q  E  Y  D  F  P  V  G  I  L  P  K  G  V  T  R  Y  E  L  D  K  T  T  G  N  F  A  V  Y  F  N  K  S  C  S  F  S  I  S  G  Y  N  L  K  Y  M  S  K  I  T  G  K  I  S  K  D  R  L  A  N  L  K  G  V  Q  V  K  V  L  L  F  W  I  N  I  V  E  V  T  R  D  G  D  D  L  D  F  S  V  G  I  A  S  A  D  F  A  I  D  N  F  Y  E  S  P  Q  C  G  C  G  F  D  C  V  N  S  G  E  N  G  T  G  K  F  D  L  K  L  L  I  T  S  S  *  I  V  N  F  Q  K  S  T  V  D  *  D  V  L  G  *  K  L  R  *  N  V  W  S  I  L  E  L  G  *  V  R  I  F  R  I  P  R  N  W  K  H  M  F  F  Y  A  P  L  E  *  I  C  I  L  S  C  I  F  C  G  A  S  S  M  Q  *  *  C  Y  F  F  Y  L  W  S  L  K  *  K  F  L  L  S  T  L  T  </first_frame>
            <second_frame>  V  T  T  N  K  I  C  L  L  *  P  F  P  Y  A  S  S  Y  S  Y  S  N  S  L  Q  L  H  R  S  S  A  M  R  I  L  S  P  R  R  R  M  R  F  F  R  N  T  T  F  R  *  G  Y  F  R  R  A  *  Q  G  T  N  S  T  K  Q  R  A  I  S  P  F  T  L  T  N  R  A  V  S  A  *  A  A  I  I  S  S  I  *  V  K  L  L  V  K  S  L  R  I  D  L  R  T  *  K  A  Y  R  *  K  C  F  C  F  G  L  I  L  S  K  L  L  V  T  A  T  I  S  I  S  P  S  V  L  L  L  L  I  L  Q  L  I  T  S  M  N  R  H  S  V  D  V  D  L  I  V  S  I  L  E  K  M  A  Q  V  S  S  I  *  S  C  L  S  L  R  L  E  S  *  I  F  R  N  R  L  *  I  K  M  F  *  D  E  N  *  D  E  M  Y  G  P  F  W  N  *  G  K  F  V  F  S  E  S  H  G  T  G  S  I  C  F  F  M  L  L  W  N  E  Y  V  F  C  H  V  S  S  V  E  L  H  L  C  S  S  S  A  T  F  S  T  C  G  V  *  N  K  N  F  C  *  A  H  *  R </second_frame>
            <third_frame>   *  L  R  T  R  Y  A  F  C  S  P  S  L  M  H  P  P  T  P  T  P  T  L  C  S  F  T  G  R  R  R  *  G  F  S  V  P  D  G  V  *  D  S  S  G  I  R  L  S  G  R  D  T  S  E  G  R  N  K  V  R  T  R  Q  N  N  G  Q  F  R  R  L  L  *  Q  I  V  Q  F  Q  H  K  R  L  *  S  Q  V  Y  E  *  N  Y  W  *  N  L  *  G  S  T  C  E  L  E  R  R  T  G  E  S  A  F  V  L  D  *  Y  C  R  S  Y  S  *  R  R  R  S  R  F  L  R  R  Y  C  F  C  *  F  C  N  *  *  L  L  *  I  A  T  V  W  M  W  I  *  L  C  Q  F  W  R  K  W  H  R  *  V  R  F  E  A  A  Y  H  F  V  L  N  R  K  F  S  E  I  D  C  R  L  R  C  F  R  M  K  I  K  M  K  C  M  V  H  F  G  I  R  V  S  S  Y  F  Q  N  P  T  E  L  E  A  Y  V  F  L  C  S  F  G  M  N  M  Y  F  V  M  Y  L  L  W  S  F  I  Y  A  V  V  V  L  L  F  L  L  V  E  F  E  I  K  I  S  V  K  H  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45396" stop="45929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNYEQDMPSVALPLCILLLLLQLSAASPVVGDEDSQSPTAYEILQEYDFPVGILPKGVTRYELDKTTGNFAVYFNKSCSFSISGYNLKYMSKITGKISKDRLANLKGVQVKVLLFWINIVEVTRDGDDLDFSVGIASADFAIDNFYESPQCGCGFDCVNSGENGTGKFDLKLLITSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="46871" PGL_stop="51458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46871" e_stop="47651"/>
            <exon e_start="50924" e_stop="51458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="0.997"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46871" e_stop="47651" e_length="781"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="47652" i_stop="50923" i_length="3272"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="50924" e_stop="51458" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46871" stop="47651"/>
              <exon start="50924" stop="51458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46894" stop="47517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46909" stop="47651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46909" stop="47607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46945" stop="47651"/>
              <exon start="50924" stop="51039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46945" stop="47651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46998" stop="47651"/>
              <exon start="50924" stop="51028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46998" stop="47574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47007" stop="47285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47127" stop="47651"/>
              <exon start="50924" stop="51150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47166" stop="47651"/>
              <exon start="50924" stop="51104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47166" stop="47651"/>
              <exon start="50924" stop="51087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47266" stop="47651"/>
              <exon start="50924" stop="51150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47321" stop="47635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAACCGGTGGGAATAAATATTATGCAATGCAAGATACCAACGTCGAAATAATTTTTTTTCTGTCATCTTCTGCAATAATTGAAACTTCCCCAAAGTCAATTATACATATCGTCGGCGCATCATCGGAGTAATCGCATCTGAATATCCATTTGATACGAAAATCATCACAAAAAACGGTAGCCTCAATGTTTTCTCCACGTCAGATCGCCGTTACCCTCGCTTTTCCTCTCTTAATCCTCTTCCTTACAACTCTACCGCCGTTAGTCACCGCCGCTGCAGCTACCGGCGACGCCGACGCCGTAAACGGTGGCACTTCCCTCACTGCTTACGACTTACTCGTAAGCTACGGCTTCCCCGTCGGAATTCTTCCACAGGGTGCTATTGGGTACGATCTCGATAAGGACACCGGAAAATTCAGTGTACATCTTAGTGGGTCTTGCAGTTTCGCATTAGAAGGGTCTTATCAGCTTAGGTATCAATCGAGATTCGGTGGGTACATAGCTAAAAATAGGCTGTCAAGCCTACATGGGGTTAGTGTAAAAATTCTGTTTCTGTGGCTGAATATTGTGGAGGTTGTTAAGAATGGTGACAATCTTGAGTTCTCTGTTGGAATTGCTTCGGCTAGCTTTCCCACTTACAATTTCTTGGTTTGTCCACAATGTGGATGTGGATTGAATTGCAATAGCAATGGACATATTCTAAAGATTCGAAACAGTAACCTTGTCTCTTCTGTTTAGCTGCACACAGAAGGATGATGGAGCCTGAGTTTACTGAAAGAG : ATACTTGCAACTCATGGAAAAGATCAGGTGACATGGTTGCAGTGTACAGAAAGCCTGAAATGGTCATTCTCCTCCTTCCTCCTCATCATAGTTGCAATACAAAAAGTCGAAAACTCATGTGTTCATTTACATTATCGTTATGTTATCTACAATTTCGTCTTTGCTCTGTCATGGATACAAAATATTCTTGAAATTGCTGTTTATAACGAGATTCTTTTCCATCACGCGTATTGCATTAAGCTCTCTATAGCTTGTACTCGGAAATCTGTTAAATCAGAAGCCAAAATGTGAAACAAAAAGAATTGAGAAGCTAAGGAACAGATGATGACATGCACTACAGTTCTCATATAAATATGCAATGCATCACCTATATTTATGACTTTTTGTGAAGAATTTGTGCATCTCATGGTTCACATTTCATTATTTTACTTTCATGCTCTGATCGTTGTATTTGACGTTGTGATTCGACCTTTTAACCCCCTCTTTGGGAGCTCCTACCTTTGTTGTATTTGACGTAGTGATTTGACTTTTTTAA</gDNA_template>
            <first_frame> R  N  R  W  E  *  I  L  C  N  A  R  Y  Q  R  R  N  N  F  F  S  V  I  F  C  N  N  *  N  F  P  K  V  N  Y  T  Y  R  R  R  I  I  G  V  I  A  S  E  Y  P  F  D  T  K  I  I  T  K  N  G  S  L  N  V  F  S  T  S  D  R  R  Y  P  R  F  S  S  L  N  P  L  P  Y  N  S  T  A  V  S  H  R  R  C  S  Y  R  R  R  R  R  R  K  R  W  H  F  P  H  C  L  R  L  T  R  K  L  R  L  P  R  R  N  S  S  T  G  C  Y  W  V  R  S  R  *  G  H  R  K  I  Q  C  T  S  *  W  V  L  Q  F  R  I  R  R  V  L  S  A  *  V  S  I  E  I  R  W  V  H  S  *  K  *  A  V  K  P  T  W  G  *  C  K  N  S  V  S  V  A  E  Y  C  G  G  C  *  E  W  *  Q  S  *  V  L  C  W  N  C  F  G  *  L  S  H  L  Q  F  L  G  L  S  T  M  W  M  W  I  E  L  Q  *  Q  W  T  Y  S  K  D  S  K  Q  *  P  C  L  F  C  L  A  A  H  R  R  M  M  E  P  E  F  T  E  R   : D  T  C  N  S  W  K  R  S  G  D  M  V  A  V  Y  R  K  P  E  M  V  I  L  L  L  P  P  H  H  S  C  N  T  K  S  R  K  L  M  C  S  F  T  L  S  L  C  Y  L  Q  F  R  L  C  S  V  M  D  T  K  Y  S  *  N  C  C  L  *  R  D  S  F  P  S  R  V  L  H  *  A  L  Y  S  L  Y  S  E  I  C  *  I  R  S  Q  N  V  K  Q  K  E  L  R  S  *  G  T  D  D  D  M  H  Y  S  S  H  I  N  M  Q  C  I  T  Y  I  Y  D  F  L  *  R  I  C  A  S  H  G  S  H  F  I  I  L  L  S  C  S  D  R  C  I  *  R  C  D  S  T  F  *  P  P  L  W  E  L  L  P  L  L  Y  L  T  *  *  F  D  F  F   </first_frame>
            <second_frame>  G  T  G  G  N  K  Y  Y  A  M  Q  D  T  N  V  E  I  I  F  F  L  S  S  S  A  I  I  E  T  S  P  K  S  I  I  H  I  V  G  A  S  S  E  *  S  H  L  N  I  H  L  I  R  K  S  S  Q  K  T  V  A  S  M  F  S  P  R  Q  I  A  V  T  L  A  F  P  L  L  I  L  F  L  T  T  L  P  P  L  V  T  A  A  A  A  T  G  D  A  D  A  V  N  G  G  T  S  L  T  A  Y  D  L  L  V  S  Y  G  F  P  V  G  I  L  P  Q  G  A  I  G  Y  D  L  D  K  D  T  G  K  F  S  V  H  L  S  G  S  C  S  F  A  L  E  G  S  Y  Q  L  R  Y  Q  S  R  F  G  G  Y  I  A  K  N  R  L  S  S  L  H  G  V  S  V  K  I  L  F  L  W  L  N  I  V  E  V  V  K  N  G  D  N  L  E  F  S  V  G  I  A  S  A  S  F  P  T  Y  N  F  L  V  C  P  Q  C  G  C  G  L  N  C  N  S  N  G  H  I  L  K  I  R  N  S  N  L  V  S  S  V  *  L  H  T  E  G  *  W  S  L  S  L  L  K  E  :  I  L  A  T  H  G  K  D  Q  V  T  W  L  Q  C  T  E  S  L  K  W  S  F  S  S  F  L  L  I  I  V  A  I  Q  K  V  E  N  S  C  V  H  L  H  Y  R  Y  V  I  Y  N  F  V  F  A  L  S  W  I  Q  N  I  L  E  I  A  V  Y  N  E  I  L  F  H  H  A  Y  C  I  K  L  S  I  A  C  T  R  K  S  V  K  S  E  A  K  M  *  N  K  K  N  *  E  A  K  E  Q  M  M  T  C  T  T  V  L  I  *  I  C  N  A  S  P  I  F  M  T  F  C  E  E  F  V  H  L  M  V  H  I  S  L  F  Y  F  H  A  L  I  V  V  F  D  V  V  I  R  P  F  N  P  L  F  G  S  S  Y  L  C  C  I  *  R  S  D  L  T  F  L  </second_frame>
            <third_frame>   E  P  V  G  I  N  I  M  Q  C  K  I  P  T  S  K  *  F  F  F  C  H  L  L  Q  *  L  K  L  P  Q  S  Q  L  Y  I  S  S  A  H  H  R  S  N  R  I  *  I  S  I  *  Y  E  N  H  H  K  K  R  *  P  Q  C  F  L  H  V  R  S  P  L  P  S  L  F  L  S  *  S  S  S  L  Q  L  Y  R  R  *  S  P  P  L  Q  L  P  A  T  P  T  P  *  T  V  A  L  P  S  L  L  T  T  Y  S  *  A  T  A  S  P  S  E  F  F  H  R  V  L  L  G  T  I  S  I  R  T  P  E  N  S  V  Y  I  L  V  G  L  A  V  S  H  *  K  G  L  I  S  L  G  I  N  R  D  S  V  G  T  *  L  K  I  G  C  Q  A  Y  M  G  L  V  *  K  F  C  F  C  G  *  I  L  W  R  L  L  R  M  V  T  I  L  S  S  L  L  E  L  L  R  L  A  F  P  L  T  I  S  W  F  V  H  N  V  D  V  D  *  I  A  I  A  M  D  I  F  *  R  F  E  T  V  T  L  S  L  L  F  S  C  T  Q  K  D  D  G  A  *  V  Y  *  K  R :   Y  L  Q  L  M  E  K  I  R  *  H  G  C  S  V  Q  K  A  *  N  G  H  S  P  P  S  S  S  S  *  L  Q  Y  K  K  S  K  T  H  V  F  I  Y  I  I  V  M  L  S  T  I  S  S  L  L  C  H  G  Y  K  I  F  L  K  L  L  F  I  T  R  F  F  S  I  T  R  I  A  L  S  S  L  *  L  V  L  G  N  L  L  N  Q  K  P  K  C  E  T  K  R  I  E  K  L  R  N  R  *  *  H  A  L  Q  F  S  Y  K  Y  A  M  H  H  L  Y  L  *  L  F  V  K  N  L  C  I  S  W  F  T  F  H  Y  F  T  F  M  L  *  S  L  Y  L  T  L  *  F  D  L  L  T  P  S  L  G  A  P  T  F  V  V  F  D  V  V  I  *  L  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47004" stop="47609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHLNIHLIRKSSQKTVASMFSPRQIAVTLAFPLLILFLTTLPPLVTAAAATGDADAVNGGTSLTAYDLLVSYGFPVGILPQGAIGYDLDKDTGKFSVHLSGSCSFALEGSYQLRYQSRFGGYIAKNRLSSLHGVSVKILFLWLNIVEVVKNGDNLEFSVGIASASFPTYNFLVCPQCGCGLNCNSNGHILKIRNSNLVSSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47628" stop="47651"/>
                    <exon start="50924" stop="51214"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLSLLKEILATHGKDQVTWLQCTESLKWSFSSFLLIIVAIQKVENSCVHLHYRYVIYNFVFALSWIQNILEIAVYNEILFHHAYCIKLSIACTRKSVKSEAKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="51122" PGL_stop="47163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51122" e_stop="50922"/>
            <exon e_start="47947" e_stop="47942"/>
            <exon e_start="47642" e_stop="47163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.552" acc_prob="0.979" e_score="0.836"/>
          <exon-intron don_prob="0.000" acc_prob="0.542" e_score="0.667"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.836">
            <gDNA_exon_boundary e_start="51122" e_stop="50922" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.552" acc_prob="0.979">
            <gDNA_intron_boundary i_start="50921" i_stop="47948" i_length="2974"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="47947" e_stop="47942" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.542">
            <gDNA_intron_boundary i_start="47941" i_stop="47643" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="47642" e_stop="47163" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51122" stop="50922"/>
              <exon start="47947" stop="47942"/>
              <exon start="47642" stop="47163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAATTTCAAGAATATTTTGTATCCATGACAGAGCAAAGACGAAATTGTAGATAACATAACGATAATGTAAATGAACACATGAGTTTTCGACTTTTTGTATTGCAACTATGATGAGGAGGAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCT : TTTCAG : TAAACTCAGGCTCCATCATCCTTCTGTGTGCAGCTAAACAGAAGAGACAAGGTTACTGTTTCGAATCTTTAGAATATGTCCATTGCTATTGCAATTCAATCCACATCCACATTGTGGACAAACCAAGAAATTGTAAGTGGGAAAGCTAGCCGAAGCAATTCCAACAGAGAACTCAAGATTGTCACCATTCTTAACAACCTCCACAATATTCAGCCACAGAAACAGAATTTTTACACTAACCCCATGTAGGCTTGACAGCCTATTTTTAGCTATGTACCCACCGAATCTCGATTGATACCTAAGCTGATAAGACCCTTCTAATGCGAAACTGCAAGACCCACTAAGATGTACACTGAATTTTCCGGTGTCCTTATCGAGATCGTACCCAATAGCACCCTGTGGAAGAATTCCGACGGGGAAGCCGTAGCTTACGAGTAAGTCGTAAGCAGTGAGGGAAGTGCCACCGTTTACGGCGTCGGC</gDNA_template>
            <first_frame> Q  Q  F  Q  E  Y  F  V  S  M  T  E  Q  R  R  N  C  R  *  H  N  D  N  V  N  E  H  M  S  F  R  L  F  V  L  Q  L  *  *  G  G  R  R  R  M  T  I  S  G  F  L  Y  T  A  T  M  S  P  D  L  F  H  E  L  Q  V  S  :  F  Q  :  *  T  Q  A  P  S  S  F  C  V  Q  L  N  R  R  D  K  V  T  V  S  N  L  *  N  M  S  I  A  I  A  I  Q  S  T  S  T  L  W  T  N  Q  E  I  V  S  G  K  A  S  R  S  N  S  N  R  E  L  K  I  V  T  I  L  N  N  L  H  N  I  Q  P  Q  K  Q  N  F  Y  T  N  P  M  *  A  *  Q  P  I  F  S  Y  V  P  T  E  S  R  L  I  P  K  L  I  R  P  F  *  C  E  T  A  R  P  T  K  M  Y  T  E  F  S  G  V  L  I  E  I  V  P  N  S  T  L  W  K  N  S  D  G  E  A  V  A  Y  E  *  V  V  S  S  E  G  S  A  T  V  Y  G  V  G </first_frame>
            <second_frame>  S  N  F  K  N  I  L  Y  P  *  Q  S  K  D  E  I  V  D  N  I  T  I  M  *  M  N  T  *  V  F  D  F  L  Y  C  N  Y  D  E  E  E  G  G  E  *  P  F  Q  A  F  C  T  L  Q  P  C  H  L  I  F  S  M  S  C  K  Y  L :   F  S :   K  L  R  L  H  H  P  S  V  C  S  *  T  E  E  T  R  L  L  F  R  I  F  R  I  C  P  L  L  L  Q  F  N  P  H  P  H  C  G  Q  T  K  K  L  *  V  G  K  L  A  E  A  I  P  T  E  N  S  R  L  S  P  F  L  T  T  S  T  I  F  S  H  R  N  R  I  F  T  L  T  P  C  R  L  D  S  L  F  L  A  M  Y  P  P  N  L  D  *  Y  L  S  *  *  D  P  S  N  A  K  L  Q  D  P  L  R  C  T  L  N  F  P  V  S  L  S  R  S  Y  P  I  A  P  C  G  R  I  P  T  G  K  P  *  L  T  S  K  S  *  A  V  R  E  V  P  P  F  T  A  S   </second_frame>
            <third_frame>   A  I  S  R  I  F  C  I  H  D  R  A  K  T  K  L  *  I  T  *  R  *  C  K  *  T  H  E  F  S  T  F  C  I  A  T  M  M  R  R  K  E  E  N  D  H  F  R  L  S  V  H  C  N  H  V  T  *  S  F  P  *  V  A  S  I   : F  S   : V  N  S  G  S  I  I  L  L  C  A  A  K  Q  K  R  Q  G  Y  C  F  E  S  L  E  Y  V  H  C  Y  C  N  S  I  H  I  H  I  V  D  K  P  R  N  C  K  W  E  S  *  P  K  Q  F  Q  Q  R  T  Q  D  C  H  H  S  *  Q  P  P  Q  Y  S  A  T  E  T  E  F  L  H  *  P  H  V  G  L  T  A  Y  F  *  L  C  T  H  R  I  S  I  D  T  *  A  D  K  T  L  L  M  R  N  C  K  T  H  *  D  V  H  *  I  F  R  C  P  Y  R  D  R  T  Q  *  H  P  V  E  E  F  R  R  G  S  R  S  L  R  V  S  R  K  Q  *  G  K  C  H  R  L  R  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51001" e_stop="50650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="51001" e_stop="50650" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51001" stop="50650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318410" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGAGGAGAATGACCATTTCAGGCTTTCTGTACACTGCAACCATGTCACCTGATCTTTTCCATGAGTTGCAAGTATCTGCAAGCACTCAACAAATAGAGTCATGTATTAGATATCTTCCTTCTAATTTTCGAGGCAATGCAGAAGTCAAATACACTATAAAGTGCCATAGGTTGCTACAGAAGAGAAAGAGAAAGGGCAGAGGAAATAAGCAGATCTTGTGGCTGCAGGTCTGTCTCTCACACAATGTACTATACAAGTGCATCAAAGGTTTTTAGTATTGGACCAAATATTATTTATTTAGTTATAGGTTTATATTTCTTACTTATTGCAATTTTAGTGAATTATTACA</gDNA_template>
            <first_frame> E  G  G  E  *  P  F  Q  A  F  C  T  L  Q  P  C  H  L  I  F  S  M  S  C  K  Y  L  Q  A  L  N  K  *  S  H  V  L  D  I  F  L  L  I  F  E  A  M  Q  K  S  N  T  L  *  S  A  I  G  C  Y  R  R  E  R  E  R  A  E  E  I  S  R  S  C  G  C  R  S  V  S  H  T  M  Y  Y  T  S  A  S  K  V  F  S  I  G  P  N  I  I  Y  L  V  I  G  L  Y  F  L  L  I  A  I  L  V  N  Y  Y  </first_frame>
            <second_frame>  K  E  E  N  D  H  F  R  L  S  V  H  C  N  H  V  T  *  S  F  P  *  V  A  S  I  C  K  H  S  T  N  R  V  M  Y  *  I  S  S  F  *  F  S  R  Q  C  R  S  Q  I  H  Y  K  V  P  *  V  A  T  E  E  K  E  K  G  Q  R  K  *  A  D  L  V  A  A  G  L  S  L  T  Q  C  T  I  Q  V  H  Q  R  F  L  V  L  D  Q  I  L  F  I  *  L  *  V  Y  I  S  Y  L  L  Q  F  *  *  I  I  T </second_frame>
            <third_frame>   R  R  R  M  T  I  S  G  F  L  Y  T  A  T  M  S  P  D  L  F  H  E  L  Q  V  S  A  S  T  Q  Q  I  E  S  C  I  R  Y  L  P  S  N  F  R  G  N  A  E  V  K  Y  T  I  K  C  H  R  L  L  Q  K  R  K  R  K  G  R  G  N  K  Q  I  L  W  L  Q  V  C  L  S  H  N  V  L  Y  K  C  I  K  G  F  *  Y  W  T  K  Y  Y  L  F  S  Y  R  F  I  F  L  T  Y  C  N  F  S  E  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50999" stop="50724"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRMTISGFLYTATMSPDLFHELQVSASTQQIESCIRYLPSNFRGNAEVKYTIKCHRLLQKRKRKGRGNKQILWLQVCLSHNVLYKCIKGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="62893" PGL_stop="53658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55688" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56898" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56898" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56898" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56893" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56893" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56892" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56892" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56890" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56889" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56889" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="56181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
              <exon start="56196" stop="55971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56817" stop="56655"/>
              <exon start="56196" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
              <exon start="56196" stop="55797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56781" stop="56655"/>
              <exon start="56196" stop="55781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56005" stop="55735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55890" stop="55688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATT</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L  F  F  S  S  F  F  F  E  F  F  N  L  Q  V  Y  V   </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S  Y  F  F  L  L  F  F  L  N  S  S  I  S  R  F  T  Y  </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  I  F  F  F  F  F  F  *  I  L  Q  S  P  G  L  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
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            <exon e_start="56948" e_stop="56655"/>
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            <exon e_start="55463" e_stop="55445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.632"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
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          <exon e_serial="2" e_score="1.000">
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          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.812">
            <gDNA_intron_boundary i_start="55727" i_stop="55464" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="0.632">
            <gDNA_exon_boundary e_start="55463" e_stop="55445" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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              <exon start="56948" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E720360" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E281949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="56181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
              <exon start="56196" stop="55971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56817" stop="56655"/>
              <exon start="56196" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
              <exon start="56196" stop="55797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56781" stop="56655"/>
              <exon start="56196" stop="55781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56005" stop="55735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTT : AGATCATAACAAACAATAA</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L  F  F  S   : *  I  I  T  N  N   </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S  Y  F  F  L  :  R  S  *  Q  T  I  </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  I  F  F  L :   D  H  N  K  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55739"/>
            <exon e_start="55463" e_stop="55449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55739" e_length="458"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.812">
            <gDNA_intron_boundary i_start="55738" i_stop="55464" i_length="275"/>
          </intron>
          <exon e_serial="3" e_score="0.533">
            <gDNA_exon_boundary e_start="55463" e_stop="55449" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720402" strand="+"/>
          </PGS_line>
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              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56721" stop="56655"/>
              <exon start="56196" stop="55739"/>
              <exon start="55463" stop="55449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCT : AGATCATAACAAACA</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L :   D  H  N  K   </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S   : *  I  I  T  N  </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  :  R  S  *  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55743"/>
            <exon e_start="54699" e_stop="54652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55743" e_length="454"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55742" i_stop="54700" i_length="1043"/>
          </intron>
          <exon e_serial="3" e_score="0.708">
            <gDNA_exon_boundary e_start="54699" e_stop="54652" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56854" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56854" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56854" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="56108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56852" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="56181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
              <exon start="56196" stop="55971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56817" stop="56655"/>
              <exon start="56196" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
              <exon start="56196" stop="55797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56781" stop="56655"/>
              <exon start="56196" stop="55781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGA : AAATAAAAAGGAAATTAAATTACAAAAGAAATATAAAAAAAGAATAAA</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *   : K  I  K  R  K  L  N  Y  K  R  N  I  K  K  E  *  </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  :  K  *  K  G  N  *  I  T  K  E  I  *  K  K  N  K </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  E :   N  K  K  E  I  K  L  Q  K  K  Y  K  K  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55744"/>
            <exon e_start="55463" e_stop="55446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55744" e_length="453"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.812">
            <gDNA_intron_boundary i_start="55743" i_stop="55464" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="55463" e_stop="55446" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56899" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56898" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56898" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56898" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56893" stop="56655"/>
              <exon start="56196" stop="55744"/>
              <exon start="55463" stop="55446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56893" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56892" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56892" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56890" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56889" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56889" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56887" stop="56655"/>
              <exon start="56196" stop="55878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56886" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56817" stop="56655"/>
              <exon start="56196" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
              <exon start="56196" stop="55797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56781" stop="56655"/>
              <exon start="56196" stop="55781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56761" stop="56655"/>
              <exon start="56196" stop="55757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306599" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56740" stop="56655"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAG : AGATCATAACAAACAATA</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  :  R  S  *  Q  T  I </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R :   D  H  N  K  Q   </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L   : E  I  I  T  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55759"/>
            <exon e_start="55463" e_stop="55458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55759" e_length="438"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.812">
            <gDNA_intron_boundary i_start="55758" i_stop="55464" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="55463" e_stop="55458" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
              <exon start="55463" stop="55458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
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              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
              <exon start="56196" stop="56181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
              <exon start="56196" stop="55971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
              <exon start="56196" stop="55797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56781" stop="56655"/>
              <exon start="56196" stop="55781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTA : AGATCA</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  :  R  S </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  * :   D   </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V   : K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55758"/>
            <exon e_start="54309" e_stop="54274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.694"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55758" e_length="439"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55757" i_stop="54310" i_length="1448"/>
          </intron>
          <exon e_serial="3" e_score="0.694">
            <gDNA_exon_boundary e_start="54309" e_stop="54274" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718318" strand="+"/>
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          <PGS_line>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
              <exon start="56196" stop="55842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56817" stop="56655"/>
              <exon start="56196" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
              <exon start="56196" stop="55797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
              <exon start="56196" stop="55780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56781" stop="56655"/>
              <exon start="56196" stop="55781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56753" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56746" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
              <exon start="56196" stop="56102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56702" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56694" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAA : GTATAAAACAAGAAAGAGAAAGACACTTGGGCGGGG</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L   : S  I  K  Q  E  R  E  R  H  L  G  G  </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  :  V  *  N  K  K  E  K  D  T  W  A  G </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  K :   Y  K  T  R  K  R  K  T  L  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="56948" e_stop="56655"/>
            <exon e_start="56196" e_stop="55763"/>
            <exon e_start="54903" e_stop="54849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56948" e_stop="56655" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="55763" e_length="434"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55762" i_stop="54904" i_length="859"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="54903" e_stop="54849" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56948" stop="56655"/>
              <exon start="56196" stop="55968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56903" stop="56655"/>
              <exon start="56196" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56902" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56901" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
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            <gDNA_exon_coordinates>
              <exon start="56858" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56858" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56858" stop="56655"/>
              <exon start="56196" stop="55772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56858" stop="56655"/>
              <exon start="56196" stop="55876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56858" stop="56655"/>
              <exon start="56196" stop="55995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="55942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56857" stop="56655"/>
              <exon start="56196" stop="56104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="55942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="56010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56856" stop="56655"/>
              <exon start="56196" stop="56015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56655"/>
              <exon start="56196" stop="55912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56854" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56854" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56854" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
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            <referenceDNA id="SGN-E734133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245224" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55789"/>
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            <referenceDNA id="SGN-E247976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="55873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56853" stop="56655"/>
              <exon start="56196" stop="56108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56852" stop="56655"/>
              <exon start="56196" stop="55777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55874"/>
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            <referenceDNA id="SGN-E245327" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247331" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
              <exon start="56196" stop="55908"/>
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            <referenceDNA id="SGN-E246408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56851" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248242" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
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            <referenceDNA id="SGN-E714116" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E715900" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
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            <referenceDNA id="SGN-E715964" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
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            <referenceDNA id="SGN-E716138" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56849" stop="56655"/>
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            <referenceDNA id="SGN-E733605" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
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            <referenceDNA id="SGN-E715374" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56848" stop="56655"/>
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            <referenceDNA id="SGN-E716904" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E306240" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E281949" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56847" stop="56655"/>
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            <referenceDNA id="SGN-E249540" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E244307" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="56655"/>
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            <referenceDNA id="SGN-E247163" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56837" stop="56655"/>
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            <referenceDNA id="SGN-E337946" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
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            <referenceDNA id="SGN-E720775" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56836" stop="56655"/>
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            <referenceDNA id="SGN-E721581" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
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            <referenceDNA id="SGN-E286063" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56814" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723476" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56808" stop="56655"/>
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            <referenceDNA id="SGN-E719210" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56800" stop="56655"/>
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            <referenceDNA id="SGN-E543993" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E715386" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56764" stop="56655"/>
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            <referenceDNA id="SGN-E713951" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56760" stop="56655"/>
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            <referenceDNA id="SGN-E715792" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370690" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56752" stop="56655"/>
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            <referenceDNA id="SGN-E717036" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56747" stop="56655"/>
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            <referenceDNA id="SGN-E712417" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56743" stop="56655"/>
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            <referenceDNA id="SGN-E272622" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56733" stop="56655"/>
              <exon start="56196" stop="55804"/>
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            <referenceDNA id="SGN-E245977" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56713" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304780" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201474" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
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            <referenceDNA id="SGN-E203483" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56711" stop="56655"/>
              <exon start="56196" stop="55765"/>
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            <referenceDNA id="SGN-E209179" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56696" stop="56655"/>
              <exon start="56196" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716807" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551160" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56677" stop="56655"/>
              <exon start="56196" stop="55765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTTCCCTCCTCATTCTCCATCTCTATATATACTTCCCCATTCTCTCCTCCATTTCTCCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGT : ATTAAGACTACTTAAATTGTTAATACCTAAAGCTTATTTTTATTTTTATTTTTAT</gDNA_template>
            <first_frame> A  F  F  P  P  H  S  P  S  L  Y  I  L  P  H  S  L  L  H  F  S  S  L  M  *  P  *  V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V :   L  R  L  L  K  L  L  I  P  K  A  Y  F  Y  F  Y  F  Y </first_frame>
            <second_frame>  P  F  S  L  L  I  L  H  L  Y  I  Y  F  P  I  L  S  S  I  S  P  R  L  C  N  P  K  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *   : Y  *  D  Y  L  N  C  *  Y  L  K  L  I  F  I  F  I  F   </second_frame>
            <third_frame>   L  F  P  S  S  F  S  I  S  I  Y  T  S  P  F  S  P  P  F  L  L  A  Y  V  T  L  S  S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  :  I  K  T  T  *  I  V  N  T  *  S  L  F  L  F  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56946" stop="56655"/>
                    <exon start="56196" stop="56153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPSSFSISIYTSPFSPPFLLAYVTLSSPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQRHHKVQFPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56731" stop="56655"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMARSFSNSKTLSAFVSDSVSAFLSRRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="56436" e_stop="56424"/>
            <exon e_start="56196" e_stop="55688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.508" acc_prob="1.000" e_score="0.769"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.769">
            <gDNA_exon_boundary e_start="56436" e_stop="56424" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.508" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56423" i_stop="56197" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="56196" e_stop="55688" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56436" stop="56424"/>
              <exon start="56196" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56187" stop="55778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56182" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56180" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56175" stop="55763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56005" stop="55735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55890" stop="55688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTAGCTG : GCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGATGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATT</gDNA_template>
            <first_frame> F  F  L  A   : G  V  D  M  Q  R  H  H  K  V  Q  F  P  V  *  Q  K  E  C  Q  G  A  T  *  *  C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  I  F  F  F  F  F  F  *  I  L  Q  S  P  G  L  R  I </first_frame>
            <second_frame>  F  S  *  L  :  A  W  I  C  S  G  I  T  R  C  S  F  R  C  S  K  R  S  A  K  E  Q  R  D  D  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L  F  F  S  S  F  F  F  E  F  F  N  L  Q  V  Y  V   </second_frame>
            <third_frame>   F  L  S  W :   R  G  Y  A  A  A  S  Q  G  A  V  S  G  V  A  K  G  V  P  R  S  N  V  M  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S  Y  F  F  L  L  F  F  L  N  S  S  I  S  R  F  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56434" stop="56424"/>
                    <exon start="56196" stop="55977"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSWRGYAAASQGAVSGVAKGVPRSNVMMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="56867" e_stop="56655"/>
            <exon e_start="56196" e_stop="56189"/>
            <exon e_start="56123" e_stop="55688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56867" e_stop="56655" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56654" i_stop="56197" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56196" e_stop="56189" e_length="8"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56188" i_stop="56124" i_length="65"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56123" e_stop="55688" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56867" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56867" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56867" stop="56655"/>
              <exon start="56196" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56866" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56860" stop="56655"/>
              <exon start="56196" stop="56189"/>
              <exon start="56123" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56079" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56020" stop="55744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56005" stop="55735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55929" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55890" stop="55688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTCTTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCGTTTCTGCTTTTCTCAGCAG : GCGTGGAT : ATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATGAGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTCCGGTTACTCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTCGTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATTAGTGTTAATCTTCGGGCTTTAGATCCTATTTTTTTCTTCTTTTTTTTTTGAATTCTTCAATCTCCAGGTTTACGTATT</gDNA_template>
            <first_frame> V  R  R  R  K  R  V  E  A  T  E  F  Q  F  A  A  A  E  A  P  *  P  N  S  F  R  R  S  V  L  I  Q  K  F  S  C  S  D  S  D  L  D  I  I  I  S  N  G  S  F  F  L  *  L  *  D  S  L  C  F  R  L  R  L  R  F  C  F  S  Q  Q  :  A  W  I :   C  K  K  V  E  R  N  R  *  R  L  H  G  C  Q  I  Q  L  P  V  T  I  G  R  K  D  K  Q  M  R  L  T  L  L  S  S  G  R  C  C  *  N  T  D  L  E  A  T  E  N  L  *  S  C  A  V  D  L  R  L  L  I  G  D  F  R  S  T  R  K  E  N  L  V  K  E  L  F  Y  Q  K  N  I  A  V  *  N  L  L  V  L  C  C  F  *  I  L  S  L  L  L  Y  L  S  F  I  S  I  F  Y  S  C  K  *  N  N  Y  S  I  S  V  N  L  R  A  L  D  P  I  F  F  F  F  F  F  *  I  L  Q  S  P  G  L  R  I </first_frame>
            <second_frame>  F  A  G  E  R  E  S  K  L  Q  N  F  S  S  P  L  R  K  L  H  S  Q  T  P  S  A  A  A  F  L  F  R  N  S  L  A  P  T  P  I  S  I  S  *  *  A  M  A  R  S  F  S  N  S  K  T  L  S  A  F  V  S  D  S  V  S  A  F  L  S  R :   R  G   : Y  A  K  K  W  R  G  I  G  E  D  F  M  G  A  R  S  S  Y  R  L  L  *  A  G  R  T  S  K  *  D  *  R  C  *  A  P  E  D  A  V  E  T  Q  I  W  K  Q  L  K  I  F  E  A  A  P  L  I  S  G  Y  S  S  E  I  F  D  Q  R  E  K  R  I  *  *  R  N  C  F  I  R  K  I  *  Q  C  E  I  Y  S  C  F  V  A  F  K  F  *  A  Y  C  Y  I  F  L  L  L  V  S  F  I  H  A  N  E  I  I  I  V  L  V  L  I  F  G  L  *  I  L  F  F  S  S  F  F  F  E  F  F  N  L  Q  V  Y  V   </second_frame>
            <third_frame>   S  P  E  K  E  S  R  S  Y  R  I  S  V  R  R  C  G  S  S  I  A  K  L  L  P  P  Q  R  S  Y  S  E  I  L  L  L  R  L  R  S  R  Y  H  N  K  Q  W  L  V  L  S  L  T  L  R  L  S  L  L  S  S  P  T  P  F  L  L  F  S  A   : G  V  D  :  M  Q  K  S  G  E  E  S  V  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  G  Q  A  N  E  I  D  A  A  E  L  R  K  M  L  L  K  H  R  S  G  S  N  *  K  S  L  K  L  R  R  *  S  P  V  T  H  R  R  F  S  I  N  E  K  R  E  F  S  E  G  T  V  L  S  E  K  Y  S  S  V  K  F  T  R  A  L  L  L  L  N  F  K  L  I  V  I  S  F  F  Y  *  Y  L  L  F  M  Q  M  K  *  L  *  Y  *  C  *  S  S  G  F  R  S  Y  F  F  L  L  F  F  L  N  S  S  I  S  R  F  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56865" stop="56655"/>
                    <exon start="56196" stop="56189"/>
                    <exon start="56123" stop="55977"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPEKESRSYRISVRRCGSSIAKLLPPQRSYSEILLLRLRSRYHNKQWLVLSLTLRLSLLSSPTPFLLFSAGVDMQKSGEESVKTSWVPDPVTGYYRPEGQANEIDAAELRKMLLKHRSGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="62893" e_stop="62560"/>
            <exon e_start="53771" e_stop="53658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.851"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="62893" e_stop="62560" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62559" i_stop="53772" i_length="8788"/>
          </intron>
          <exon e_serial="2" e_score="0.851">
            <gDNA_exon_boundary e_start="53771" e_stop="53658" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62893" stop="62572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62893" stop="62603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62892" stop="62560"/>
              <exon start="53771" stop="53658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTACGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAAGAGAAACACAATATATTCACTTCTGTTGTATAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTATATAATTTGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTATACACTTCTGTGTATAAAGCAAGAGAGGCGAGCGAGATT : GGAGAGTGGCGAGCGAGATATTTGGGAGAGAGGCGTCTGACAATTTTTTGCAAACGTTTGCTATGGAACACAATTAATCAAATCCTAGCTACTCCATTTGTTTTAGATTATTAG</gDNA_template>
            <first_frame> *  N  V  R  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  R  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  I  F  H  C  N  C  I  I  R  N  Y  I  I  C  W  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  K  R  G  E  R  D   : W  R  V  A  S  E  I  F  G  R  E  A  S  D  N  F  L  Q  T  F  A  M  E  H  N  *  S  N  P  S  Y  S  I  C  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  E  K  H  N  I  F  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  I  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  I  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  I  :  G  E  W  R  A  R  Y  L  G  E  R  R  L  T  I  F  C  K  R  L  L  W  N  T  I  N  Q  I  L  A  T  P  F  V  L  D  Y  * </second_frame>
            <third_frame>   K  C  T  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  K  R  N  T  I  Y  S  L  L  L  Y  K  A  R  E  N  Y  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  *  K  Q  N  Y  T  L  L  C  I  K  Q  E  R  R  A  R  L :   E  S  G  E  R  D  I  W  E  R  G  V  *  Q  F  F  A  N  V  C  Y  G  T  Q  L  I  K  S  *  L  L  H  L  F  *  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62706" stop="62560"/>
                    <exon start="53771" stop="53658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYIFLHVYIQFSLALYKIETELYTSVYKAREASEIGEWRARYLGERRLTIFCKRLLWNTINQILATPFVLDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="63786" PGL_stop="69568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63786" e_stop="64084"/>
            <exon e_start="64183" e_stop="64355"/>
            <exon e_start="68056" e_stop="68149"/>
            <exon e_start="68460" e_stop="68548"/>
            <exon e_start="69014" e_stop="69532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="0.973"/>
          <exon-intron don_prob="0.963" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="63786" e_stop="64084" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64183" e_stop="64355" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.976">
            <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68056" e_stop="68149" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68460" e_stop="68548" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465"/>
          </intron>
          <exon e_serial="5" e_score="0.919">
            <gDNA_exon_boundary e_start="69014" e_stop="69532" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63786" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63885" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63893" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63923" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63923" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63923" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63926" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63946" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63947" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63948" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63948" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63948" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63952" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63953" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63955" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63961" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63961" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63964" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63964" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63972" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64204" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68479" stop="68548"/>
              <exon start="69014" stop="69532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414261" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGATCATTTGTCCAAATAATTAGAGAAGATCTAACTGGGCTGATTTTCCTTTACAAGCCCATTTTCTTATCCAGCCCAAGCCCAATTAGAACCCCTACTCGTGCCCAAAAATTTCTGGAGAAATTAACGACTACTGAAGTTTCTACCTCACCGGCGAAAGTTGCAGCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG : AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG : AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG : GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT : TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTCACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAAGTGTCAAGTCTCATTTAAACATTATTTGGTGGAGAACAAACAATCTCT</gDNA_template>
            <first_frame> G  I  I  C  P  N  N  *  R  R  S  N  W  A  D  F  P  L  Q  A  H  F  L  I  Q  P  K  P  N  *  N  P  Y  S  C  P  K  I  S  G  E  I  N  D  Y  *  S  F  Y  L  T  G  E  S  C  S  *  A  *  T  S  S  H  G  G  G  E  P  K  Y  E  P  E  S  G  P  *  R  R  R  S  S  T  K  C  D  Y  L  H  Q  *  P  Q  *  K  N  *  A  *  R :   A  E  E  I  D  A  R  C  V  L  T  V  W  *  D  T  G  G  F  S  I  Q  N  P  K  A  *  R  T  G  V  G  S  V  *  *  S  F  F  C  *  Q  C  T  S  P  D  A  G  F  S  F  L  *  *  A  Y   : E  N  T  I  C  K  D  E  I  *  C  C  S  K  S  R  W  Y  F  C  S  P  R  K  K  K  E  A  R  G  *  R :   E  K  E  E  G  P  A  R  C  *  S  S  W  N  G  P  E  S  C  I  C  W  C  L  W  C  S  T  S   : F  L  T  N  T  I  H  G  W  S  *  S  C  S  T  G  G  S  C  S  A  K  *  H  I  V  C  A  E  S  S  S  S  V  Y  S  N  D  A  T  N  A  L  L  P  I  S  R  L  *  G  S  *  D  G  *  G  K  A  W  N  C  F  H  R  I  W  R  *  D  A  I  D  C  C  H  A  G  P  A  R  L  Q  N  Y  R  R  Q  S  H  A  D  Y  I  C  K  E  V  D  K  T  I  L  *  L  L  S  V  E  L  N  I  Y  F  H  *  D  L  S  V  A  I  L  S  F  M  I  L  G  Y  L  S  L  A  V  Y  L  L  C  T  S  T  L  *  F  *  C  A  S  M  D  H  L  P  F  *  K  S  V  K  S  H  L  N  I  I  W  W  R  T  N  N  L  </first_frame>
            <second_frame>  G  S  F  V  Q  I  I  R  E  D  L  T  G  L  I  F  L  Y  K  P  I  F  L  S  S  P  S  P  I  R  T  P  T  R  A  Q  K  F  L  E  K  L  T  T  T  E  V  S  T  S  P  A  K  V  A  A  R  R  R  R  A  A  M  A  E  A  N  Q  N  T  N  P  N  P  A  P  S  G  G  E  V  P  P  N  V  T  I  Y  I  N  N  L  N  E  K  I  K  L  E   : E  L  K  K  S  M  H  A  V  F  S  Q  F  G  K  I  L  E  V  L  A  F  K  T  L  K  H  K  G  Q  A  W  V  V  F  D  E  V  S  S  A  S  N  A  L  R  Q  M  Q  G  F  P  F  Y  D  K  P  M  :  R  I  Q  Y  A  K  T  K  S  D  V  V  A  K  A  D  G  T  F  V  P  R  E  K  R  K  R  H  E  D  K   : G  R  K  K  K  D  Q  Q  D  A  N  Q  A  G  M  G  R  N  P  A  Y  A  G  A  Y  G  A  A  P  P  :  F  S  Q  I  P  Y  M  G  G  A  K  A  A  V  P  E  A  P  A  P  P  N  S  I  L  F  V  Q  N  L  P  H  Q  S  T  P  M  M  L  Q  M  L  F  C  Q  Y  P  G  F  K  E  V  R  M  V  E  A  K  P  G  I  A  F  I  E  Y  G  D  E  M  Q  S  T  V  A  M  Q  A  L  Q  G  F  K  I  T  A  D  N  P  M  L  I  T  Y  A  K  K  *  I  R  L  Y  C  S  C  Y  L  *  N  *  T  F  T  F  T  R  I  *  V  L  Q  F  *  A  L  *  S  L  D  I  *  V  *  P  C  I  C  C  V  L  A  P  C  N  F  D  V  L  L  W  T  I  C  H  F  K  K  V  S  S  L  I  *  T  L  F  G  G  E  Q  T  I  S </second_frame>
            <third_frame>   D  H  L  S  K  *  L  E  K  I  *  L  G  *  F  S  F  T  S  P  F  S  Y  P  A  Q  A  Q  L  E  P  L  L  V  P  K  N  F  W  R  N  *  R  L  L  K  F  L  P  H  R  R  K  L  Q  L  G  V  D  E  Q  P  W  R  R  R  T  K  I  R  T  R  I  R  P  L  A  A  A  K  F  H  Q  M  *  L  F  T  S  I  T  S  M  K  K  L  S  L  K  :  S  *  R  N  R  C  T  L  C  S  H  S  L  V  R  Y  W  R  F  *  H  S  K  P  *  S  I  K  D  R  R  G  *  C  L  M  K  F  L  L  L  A  M  H  F  A  R  C  R  V  F  L  S  M  I  S  L  * :   E  Y  N  M  Q  R  R  N  L  M  L  *  Q  K  P  M  V  L  L  F  P  E  K  K  E  R  G  T  R  I  K  :  G  E  R  R  R  T  S  K  M  L  I  K  L  E  W  A  G  I  L  H  M  L  V  L  M  V  Q  H  L  L :   S  H  K  Y  H  T  W  V  E  L  K  L  Q  Y  R  R  L  L  L  R  Q  I  A  Y  C  L  C  R  I  F  L  I  S  L  L  Q  *  C  Y  K  C  S  S  A  N  I  Q  A  L  R  K  L  G  W  L  R  Q  S  L  E  L  L  S  *  N  M  E  M  R  C  N  R  L  L  P  C  R  P  C  K  A  S  K  L  P  P  T  I  P  C  *  L  H  M  Q  R  S  R  *  D  Y  I  V  A  A  I  C  R  I  K  H  L  L  S  L  G  F  E  C  C  N  F  K  L  Y  D  P  W  I  S  K  F  S  R  V  F  A  V  Y  *  H  L  V  I  L  M  C  F  Y  G  P  F  A  I  L  K  K  C  Q  V  S  F  K  H  Y  L  V  E  N  K  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63787" stop="64084"/>
                    <exon start="64183" stop="64355"/>
                    <exon start="68056" stop="68149"/>
                    <exon start="68460" stop="68548"/>
                    <exon start="69014" stop="69307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSFVQIIREDLTGLIFLYKPIFLSSPSPIRTPTRAQKFLEKLTTTEVSTSPAKVAARRRRAAMAEANQNTNPNPAPSGGEVPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDANQAGMGRNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKITADNPMLITYAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68457" e_stop="68548"/>
            <exon e_start="68698" e_stop="68702"/>
            <exon e_start="69014" e_stop="69568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.474" e_score="0.848"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.600"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.848">
            <gDNA_exon_boundary e_start="68457" e_stop="68548" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.474">
            <gDNA_intron_boundary i_start="68549" i_stop="68697" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="68698" e_stop="68702" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68703" i_stop="69013" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="69014" e_stop="69568" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68457" stop="68548"/>
              <exon start="68698" stop="68702"/>
              <exon start="69014" stop="69568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT : ATGTA : TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTCACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAAGTGTCAAGTCTCATTTAAACATTATTTGGTGGAGAACAAACAATCTCTTTGCCTCTATAGTCTACATTGTTGAAGTATTCAGAA</gDNA_template>
            <first_frame> Q  G  E  R  R  R  T  S  K  M  L  I  K  L  E  W  A  G  I  L  H  M  L  V  L  M  V  Q  H  L  L :   C   : I  L  T  N  T  I  H  G  W  S  *  S  C  S  T  G  G  S  C  S  A  K  *  H  I  V  C  A  E  S  S  S  S  V  Y  S  N  D  A  T  N  A  L  L  P  I  S  R  L  *  G  S  *  D  G  *  G  K  A  W  N  C  F  H  R  I  W  R  *  D  A  I  D  C  C  H  A  G  P  A  R  L  Q  N  Y  R  R  Q  S  H  A  D  Y  I  C  K  E  V  D  K  T  I  L  *  L  L  S  V  E  L  N  I  Y  F  H  *  D  L  S  V  A  I  L  S  F  M  I  L  G  Y  L  S  L  A  V  Y  L  L  C  T  S  T  L  *  F  *  C  A  S  M  D  H  L  P  F  *  K  S  V  K  S  H  L  N  I  I  W  W  R  T  N  N  L  F  A  S  I  V  Y  I  V  E  V  F  R  </first_frame>
            <second_frame>  R  E  K  E  E  G  P  A  R  C  *  S  S  W  N  G  P  E  S  C  I  C  W  C  L  W  C  S  T  S   : Y  V  :  F  S  Q  I  P  Y  M  G  G  A  K  A  A  V  P  E  A  P  A  P  P  N  S  I  L  F  V  Q  N  L  P  H  Q  S  T  P  M  M  L  Q  M  L  F  C  Q  Y  P  G  F  K  E  V  R  M  V  E  A  K  P  G  I  A  F  I  E  Y  G  D  E  M  Q  S  T  V  A  M  Q  A  L  Q  G  F  K  I  T  A  D  N  P  M  L  I  T  Y  A  K  K  *  I  R  L  Y  C  S  C  Y  L  *  N  *  T  F  T  F  T  R  I  *  V  L  Q  F  *  A  L  *  S  L  D  I  *  V  *  P  C  I  C  C  V  L  A  P  C  N  F  D  V  L  L  W  T  I  C  H  F  K  K  V  S  S  L  I  *  T  L  F  G  G  E  Q  T  I  S  L  P  L  *  S  T  L  L  K  Y  S  E </second_frame>
            <third_frame>   G  R  K  K  K  D  Q  Q  D  A  N  Q  A  G  M  G  R  N  P  A  Y  A  G  A  Y  G  A  A  P  P  :  M  Y :   S  H  K  Y  H  T  W  V  E  L  K  L  Q  Y  R  R  L  L  L  R  Q  I  A  Y  C  L  C  R  I  F  L  I  S  L  L  Q  *  C  Y  K  C  S  S  A  N  I  Q  A  L  R  K  L  G  W  L  R  Q  S  L  E  L  L  S  *  N  M  E  M  R  C  N  R  L  L  P  C  R  P  C  K  A  S  K  L  P  P  T  I  P  C  *  L  H  M  Q  R  S  R  *  D  Y  I  V  A  A  I  C  R  I  K  H  L  L  S  L  G  F  E  C  C  N  F  K  L  Y  D  P  W  I  S  K  F  S  R  V  F  A  V  Y  *  H  L  V  I  L  M  C  F  Y  G  P  F  A  I  L  K  K  C  Q  V  S  F  K  H  Y  L  V  E  N  K  Q  S  L  C  L  Y  S  L  H  C  *  S  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68491" stop="68548"/>
                    <exon start="68698" stop="68702"/>
                    <exon start="69014" stop="69307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSWNGPESCICWCLWCSTSYVFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKITADNPMLITYAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="78592" PGL_stop="81403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78592" e_stop="78614"/>
            <exon e_start="79212" e_stop="79300"/>
            <exon e_start="80191" e_stop="80344"/>
            <exon e_start="80922" e_stop="81044"/>
            <exon e_start="81124" e_stop="81403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.978"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="0.987"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="0.976"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78592" e_stop="78614" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.882">
            <gDNA_intron_boundary i_start="78615" i_stop="79211" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="79212" e_stop="79300" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="79301" i_stop="80190" i_length="890"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="80191" e_stop="80344" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="80345" i_stop="80921" i_length="577"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="80922" e_stop="81044" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81045" i_stop="81123" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.911">
            <gDNA_exon_boundary e_start="81124" e_stop="81403" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78592" stop="78614"/>
              <exon start="79212" stop="79300"/>
              <exon start="80191" stop="80344"/>
              <exon start="80922" stop="81044"/>
              <exon start="81124" stop="81363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81012" stop="81044"/>
              <exon start="81124" stop="81403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATCTTCAATTCTATATTCAG : GTGGATGTGATAGAATCTCAGTGGAACGTTTTGCAATCTCACATTCAGAATTCTCATGATTTCACGGAACTTGTGGGCTTTCATCAAGA : ATACTTGGCTGCGCTAATTTCACAATCTTTCTTGGACATCGGTTCTGTCTCAAGAATTCTGGATGGAATCATGAAACTATGCTTGCAGTTCTGTTGGAAGATCGAAAATGACGAAAGCAATAGAACTACTAGTGAACTGGAGCACATAGCTGAG : GAGTTCAACAAAAAATCAAACTCCCTATACACGATACTTCGAAGTAGCAGGCTTGCTGGGAGCCAGAGAGCTCCATTCCTTAGACAATTTCTTTTGAGACTCAACTTCAATTCCTTCTTTGAG : GCAACTGCAAGAGGGGTGCTCAACGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCACCCAATCTAATTTTTCTGTAAGCCTTCCTTTGTCTGCTAGTTTTTTCCTTCTTTTCCCTGTGTGCGCATGTGTTTTTACATGCCTCTGTAAGTCGTCACATTTAGAATTGACGTATAGTTGATTGATTATATAAACGATTGCTGTAGCCTGTAAGCAGTAAGAACGTCTGCTACCTTTCCTTGCAATTTCAGCTG</gDNA_template>
            <first_frame> E  I  F  N  S  I  F  R :   W  M  *  *  N  L  S  G  T  F  C  N  L  T  F  R  I  L  M  I  S  R  N  L  W  A  F  I  K   : N  T  W  L  R  *  F  H  N  L  S  W  T  S  V  L  S  Q  E  F  W  M  E  S  *  N  Y  A  C  S  S  V  G  R  S  K  M  T  K  A  I  E  L  L  V  N  W  S  T  *  L  R :   S  S  T  K  N  Q  T  P  Y  T  R  Y  F  E  V  A  G  L  L  G  A  R  E  L  H  S  L  D  N  F  F  *  D  S  T  S  I  P  S  L  R :   Q  L  Q  E  G  C  S  T  L  S  T  L  A  H  P  Y  L  F  C  S  D  N  F  F  F  L  K  P  P  N  L  I  F  L  *  A  F  L  C  L  L  V  F  S  F  F  S  L  C  A  H  V  F  L  H  A  S  V  S  R  H  I  *  N  *  R  I  V  D  *  L  Y  K  R  L  L  *  P  V  S  S  K  N  V  C  Y  L  S  L  Q  F  Q  L </first_frame>
            <second_frame>  K  S  S  I  L  Y  S   : G  G  C  D  R  I  S  V  E  R  F  A  I  S  H  S  E  F  S  *  F  H  G  T  C  G  L  S  S  R  :  I  L  G  C  A  N  F  T  I  F  L  G  H  R  F  C  L  K  N  S  G  W  N  H  E  T  M  L  A  V  L  L  E  D  R  K  *  R  K  Q  *  N  Y  *  *  T  G  A  H  S  *   : G  V  Q  Q  K  I  K  L  P  I  H  D  T  S  K  *  Q  A  C  W  E  P  E  S  S  I  P  *  T  I  S  F  E  T  Q  L  Q  F  L  L  *   : G  N  C  K  R  G  A  Q  R  C  Q  P  S  P  I  R  I  C  S  A  V  T  I  S  S  S  *  S  H  P  I  *  F  F  C  K  P  S  F  V  C  *  F  F  P  S  F  P  C  V  R  M  C  F  Y  M  P  L  *  V  V  T  F  R  I  D  V  *  L  I  D  Y  I  N  D  C  C  S  L  *  A  V  R  T  S  A  T  F  P  C  N  F  S   </second_frame>
            <third_frame>   N  L  Q  F  Y  I  Q  :  V  D  V  I  E  S  Q  W  N  V  L  Q  S  H  I  Q  N  S  H  D  F  T  E  L  V  G  F  H  Q  E :   Y  L  A  A  L  I  S  Q  S  F  L  D  I  G  S  V  S  R  I  L  D  G  I  M  K  L  C  L  Q  F  C  W  K  I  E  N  D  E  S  N  R  T  T  S  E  L  E  H  I  A  E  :  E  F  N  K  K  S  N  S  L  Y  T  I  L  R  S  S  R  L  A  G  S  Q  R  A  P  F  L  R  Q  F  L  L  R  L  N  F  N  S  F  F  E  :  A  T  A  R  G  V  L  N  V  V  N  P  R  P  S  V  S  V  L  Q  *  Q  F  L  L  L  K  A  T  Q  S  N  F  S  V  S  L  P  L  S  A  S  F  F  L  L  F  P  V  C  A  C  V  F  T  C  L  C  K  S  S  H  L  E  L  T  Y  S  *  L  I  I  *  T  I  A  V  A  C  K  Q  *  E  R  L  L  P  F  L  A  I  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78594" stop="78614"/>
                    <exon start="79212" stop="79300"/>
                    <exon start="80191" stop="80344"/>
                    <exon start="80922" stop="81044"/>
                    <exon start="81124" stop="81186"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQFYIQVDVIESQWNVLQSHIQNSHDFTELVGFHQEYLAALISQSFLDIGSVSRILDGIMKLCLQFCWKIENDESNRTTSELEHIAEEFNKKSNSLYTILRSSRLAGSQRAPFLRQFLLRLNFNSFFEATARGVLNVVNPRPSVSVLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="83641" PGL_stop="81275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83641" e_stop="82968"/>
            <exon e_start="81293" e_stop="81275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.526"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83641" e_stop="82968" e_length="674"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.971">
            <gDNA_intron_boundary i_start="82967" i_stop="81294" i_length="1674"/>
          </intron>
          <exon e_serial="2" e_score="0.526">
            <gDNA_exon_boundary e_start="81293" e_stop="81275" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83641" stop="83397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83640" stop="83132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83304" stop="82968"/>
              <exon start="81293" stop="81275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATCAAATAACTATCTAAAATAGAGAGATTATTTTTGAT : AGGCATGTAAAAACACATG</gDNA_template>
            <first_frame> K  Q  S  T  L  V  E  A  Q  Q  H  *  K  A  Q  K  D  E  E  G  *  E  L  E  Y  S  E  E  G  *  Q  K  *  W  T  *  I  W  N  L  *  V  E  E  K  K  L  K  V  R  D  L  *  E  M  K  L  E  L  G  F  *  L  C  L  V  C  *  K  G  L  R  F  *  E  D  *  G  N  G  L  E  G  L  W  I  K  Q  V  K  L  K  L  S  V  K  W  V  S  A  V  V  L  L  E  V  F  G  L  L  S  Y  R  K  I  D  S  L  D  P  F  L  M  S  F  P  V  R  K  M  Y  R  I  R  G  R  R  *  R  *  A  T  A  *  Y  P  P  K  N  F  V  G  F  V  K  V  G  V  N  I  I  I  L  C  L  F  F  C  L  F  V  V  L  G  G  *  G  V  Y  R  G  W  *  R  W  M  Y  Q  F  K  S  G  *  I  F  V  R  V  N  L  F  V  *  F  *  I  D  M  K  F  K  K  I  K  *  L  S  K  I  E  R  L  F  L  I :   G  M  *  K  H  M </first_frame>
            <second_frame>  N  N  R  R  S  S  K  P  S  S  I  R  R  L  R  R  T  K  R  V  K  S  *  S  I  L  K  R  V  S  R  N  S  G  L  E  F  G  I  C  R  W  K  R  R  S  *  K  *  E  I  C  K  R  *  N  L  S  W  D  F  D  F  V  W  F  V  E  K  G  *  D  F  R  R  I  K  E  M  G  W  K  D  C  G  *  S  K  *  N  *  S  Y  R  *  N  G  C  L  L  L  F  F  L  R  C  L  G  F  *  V  I  G  K  L  I  L  W  I  H  F  *  *  V  F  R  *  E  K  C  T  E  S  E  E  E  D  E  D  K  R  R  L  N  T  L  Q  R  I  L  L  V  L  L  K  L  V  S  I  *  *  Y  Y  V  Y  F  F  A  Y  L  L  C  *  V  G  E  V  F  I  E  V  G  R  G  G  C  I  N  L  R  V  D  K  F  L  Y  E  S  I  Y  L  S  D  F  E  S  I  *  N  L  R  K  S  N  N  Y  L  K  *  R  D  Y  F  *   : *  A  C  K  N  T   </second_frame>
            <third_frame>   T  I  D  A  R  R  S  P  A  A  L  E  G  S  E  G  R  R  G  L  R  V  R  V  F  *  R  G  L  A  E  I  V  D  L  N  L  E  F  V  G  G  R  E  E  A  E  S  E  R  F  V  R  D  E  T  *  V  G  I  L  T  L  F  G  L  L  K  R  V  E  I  L  G  G  L  R  K  W  V  G  R  I  V  D  K  A  S  E  I  E  A  I  G  K  M  G  V  C  C  C  S  S  *  G  V  W  A  S  E  L  S  E  N  *  F  F  G  S  I  S  D  E  F  S  G  E  K  N  V  Q  N  Q  R  K  K  M  K  I  S  D  G  L  I  P  S  K  E  F  C  W  F  C  *  S  W  C  Q  Y  N  N  T  M  F  I  F  L  P  I  C  C  V  R  W  V  R  C  L  *  R  L  V  E  V  D  V  S  I  *  E  W  I  N  F  C  T  S  Q  F  I  C  L  I  L  N  R  Y  E  I  *  E  N  Q  I  T  I  *  N  R  E  I  I  F  D  :  R  H  V  K  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="83135" PGL_stop="86540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83135" e_stop="84237"/>
            <exon e_start="85537" e_stop="85766"/>
            <exon e_start="85859" e_stop="85951"/>
            <exon e_start="86094" e_stop="86540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83135" e_stop="84237" e_length="1103"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85537" e_stop="85766" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85859" e_stop="85951" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="86094" e_stop="86540" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83135" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83166" stop="83962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83170" stop="83872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83174" stop="83833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83176" stop="83990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83181" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83183" stop="83591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83186" stop="83718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83195" stop="83838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83212" stop="84084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83212" stop="83777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83212" stop="83699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83214" stop="83904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83215" stop="83818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83217" stop="84064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83217" stop="83775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83218" stop="83709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83219" stop="83862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83221" stop="83992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83222" stop="83834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83239" stop="83843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83239" stop="83808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83244" stop="83699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83258" stop="83785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83271" stop="83932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83314" stop="84019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83435" stop="83985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83549" stop="84237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83571" stop="84045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83700" stop="84237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83792" stop="84217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83824" stop="84237"/>
              <exon start="85537" stop="85622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83905" stop="84237"/>
              <exon start="85537" stop="85599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294288" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83905" stop="84237"/>
              <exon start="85537" stop="85599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83905" stop="84102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83995" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84028" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84040" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84156" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84166" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284494" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85541" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85759" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86176" stop="86434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86210" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</gDNA_template>
            <first_frame> *  A  K  K  *  T  *  Y  Y  Y  I  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F  </first_frame>
            <second_frame>  R  Q  K  N  K  H  S  I  I  I  L  T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S  S </second_frame>
            <third_frame>   G  K  K  I  N  I  V  L  L  Y  *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83245" stop="84237"/>
                    <exon start="85537" stop="85766"/>
                    <exon start="85859" stop="85951"/>
                    <exon start="86094" stop="86172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86309" stop="86503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83167" e_stop="83596"/>
            <exon e_start="83912" e_stop="84237"/>
            <exon e_start="85537" e_stop="85766"/>
            <exon e_start="85859" e_stop="85951"/>
            <exon e_start="86094" e_stop="86540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="83167" e_stop="83596" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83597" i_stop="83911" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83912" e_stop="84237" e_length="326"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85537" e_stop="85766" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85859" e_stop="85951" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="86094" e_stop="86540" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83167" stop="83596"/>
              <exon start="83912" stop="84075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83181" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83183" stop="83591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83995" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84028" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84040" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84108" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84156" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84166" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284494" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85541" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85759" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86176" stop="86434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86209" stop="86538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86210" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTT : CTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</gDNA_template>
            <first_frame> *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P   : S  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V   </first_frame>
            <second_frame>  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  :  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F  </second_frame>
            <third_frame>   T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F :   *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83245" stop="83596"/>
                    <exon start="83912" stop="84237"/>
                    <exon start="85537" stop="85766"/>
                    <exon start="85859" stop="85951"/>
                    <exon start="86094" stop="86172"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86309" stop="86503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="87839" PGL_stop="87324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87839" e_stop="87324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="87839" e_stop="87324" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87839" stop="87324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87839" stop="87478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTATGGCATCGAACTGTCGATTGTTTCACTTGGAATACTCTGATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCACCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCCGTCCATTCTCCACTACACCTCCAATTGGGACGATCCATTCACTCACAAGTTCTTATTTTCGGTTTTTCATCCGACCCATTTGTCCAAACTTCGCTAATCAGTATGTACACTGCTTGCGGCGATGTGGGTTCTGCACGGGAGGTGTTTGATGAAATGTCTCAACGAGACTTGCCTGCGTGGAATTCTATTGTGAATGCGAATGTGAAAGCAGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCTAGTAGAAATGTTGTGTCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGAGTTGTTTAATCAGATGA</gDNA_template>
            <first_frame> I  Y  G  I  E  L  S  I  V  S  L  G  I  L  *  S  E  P  M  F  N  E  L  I  N  L  Q  A  P  P  I  P  H  S  P  S  S  S  E  C  A  S  M  A  S  I  L  I  T  T  P  S  L  F  S  S  S  P  S  I  L  H  Y  T  S  N  W  D  D  P  F  T  H  K  F  L  F  S  V  F  H  P  T  H  L  S  K  L  R  *  S  V  C  T  L  L  A  A  M  W  V  L  H  G  R  C  L  M  K  C  L  N  E  T  C  L  R  G  I  L  L  *  M  R  M  *  K  Q  V  C  L  V  L  R  V  N  C  L  L  K  C  L  V  E  M  L  C  L  G  V  V  C  W  M  V  M  *  G  G  V  S  V  K  K  H  W  S  C  L  I  R  * </first_frame>
            <second_frame>  S  M  A  S  N  C  R  L  F  H  L  E  Y  S  D  Q  S  L  C  S  T  N  S  S  T  F  K  P  H  P  Y  P  T  L  H  L  P  P  N  A  L  P  W  R  P  Y  *  L  L  H  L  P  F  S  P  P  V  R  P  F  S  T  T  P  P  I  G  T  I  H  S  L  T  S  S  Y  F  R  F  F  I  R  P  I  C  P  N  F  A  N  Q  Y  V  H  C  L  R  R  C  G  F  C  T  G  G  V  *  *  N  V  S  T  R  L  A  C  V  E  F  Y  C  E  C  E  C  E  S  R  F  A  *  C  C  A  *  T  V  C  *  N  A  *  *  K  C  C  V  L  E  *  Y  V  G  W  L  C  E  V  G  *  V  *  R  S  I  G  V  V  *  S  D   </second_frame>
            <third_frame>   L  W  H  R  T  V  D  C  F  T  W  N  T  L  I  R  A  Y  V  Q  R  T  H  Q  P  S  S  P  T  H  T  P  L  S  I  F  L  R  M  R  F  H  G  V  H  I  D  Y  Y  T  F  P  F  L  L  Q  S  V  H  S  P  L  H  L  Q  L  G  R  S  I  H  S  Q  V  L  I  F  G  F  S  S  D  P  F  V  Q  T  S  L  I  S  M  Y  T  A  C  G  D  V  G  S  A  R  E  V  F  D  E  M  S  Q  R  D  L  P  A  W  N  S  I  V  N  A  N  V  K  A  G  L  L  S  V  A  R  E  L  F  V  K  M  P  S  R  N  V  V  S  W  S  S  M  L  D  G  Y  V  R  W  G  K  C  E  E  A  L  E  L  F  N  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87837" stop="87325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWHRTVDCFTWNTLIRAYVQRTHQPSSPTHTPLSIFLRMRFHGVHIDYYTFPFLLQSVHSPLHLQLGRSIHSQVLIFGFSSDPFVQTSLISMYTACGDVGSAREVFDEMSQRDLPAWNSIVNANVKAGLLSVARELFVKMPSRNVVSWSSMLDGYVRWGKCEEALELFNQM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="95414" PGL_stop="88361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95414" e_stop="95311"/>
            <exon e_start="95230" e_stop="94962"/>
            <exon e_start="92928" e_stop="92450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95414" e_stop="95311" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95230" e_stop="94962" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="92928" e_stop="92450" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95414" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95324" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95322" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95318" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95315" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95312" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95228" stop="94962"/>
              <exon start="92928" stop="92527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95227" stop="94962"/>
              <exon start="92928" stop="92713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95197" stop="94962"/>
              <exon start="92928" stop="92531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95188" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95152" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95093" stop="94962"/>
              <exon start="92928" stop="92533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95025" stop="94962"/>
              <exon start="92928" stop="92632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95022" stop="94962"/>
              <exon start="92928" stop="92559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95017" stop="94962"/>
              <exon start="92928" stop="92536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95017" stop="94962"/>
              <exon start="92928" stop="92536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTG</gDNA_template>
            <first_frame> G  R  G  D  G  S  N  R  K  R  N  E  E  N  P  N  *  I  *  S  S  T  S  I  H  S  Q  S  A  A  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  A  S  I  S  L  Y  C  L  F  P  L  D  D  H  M  *  F  I  E  F  I  F  C  C  S  C  V  F  L  L  T  T  A  P  L  M  I  S  F  N  P  *  K  D  R  L  R  L  P  S  L </first_frame>
            <second_frame>  V  G  A  T  G  Q  I  G  R  G  T  R  K  T  L  I  K  Y  N  H  P  L  P  Y  T  R  S  R  P  P  S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R  H  Q  F  L  C  I  A  F  S  L  L  M  I  T  C  N  L  *  S  L  S  F  V  V  L  V  S  F  F  *  P  L  R  H  *  *  F  P  S  I  L  E  K  I  D  *  D  Y  L  H   </second_frame>
            <third_frame>   S  G  R  R  V  K  *  E  E  E  R  G  K  P  *  L  N  I  I  I  H  F  H  T  L  A  V  G  R  R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q  G  I  N  F  S  V  L  P  F  P  S  *  *  S  H  V  I  Y  R  V  Y  L  L  L  F  L  C  L  S  F  N  H  C  A  I  D  D  F  L  Q  S  L  K  R  S  I  E  T  T  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95367" stop="95311"/>
                    <exon start="95230" stop="94962"/>
                    <exon start="92928" stop="92784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNIIIHFHTLAVGRRRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91861" e_stop="91775"/>
            <exon e_start="91686" e_stop="91427"/>
            <exon e_start="88933" e_stop="88563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91861" e_stop="91775" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91686" e_stop="91427" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88933" e_stop="88563" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91861" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91829" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91820" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91810" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91804" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91801" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91788" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91680" stop="91427"/>
              <exon start="88933" stop="88579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCT</gDNA_template>
            <first_frame> A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F  L  L  W  M  I  </first_frame>
            <second_frame>  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  S  S  G  *  S </second_frame>
            <third_frame>   K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S  P  L  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91798" stop="91775"/>
                    <exon start="91686" stop="91427"/>
                    <exon start="88933" stop="88789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88798" stop="88565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSPLDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95325" e_stop="95311"/>
            <exon e_start="95230" e_stop="94962"/>
            <exon e_start="92928" e_stop="92603"/>
            <exon e_start="91932" e_stop="91922"/>
            <exon e_start="90508" e_stop="90465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95325" e_stop="95311" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95230" e_stop="94962" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92928" e_stop="92603" e_length="326"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="92602" i_stop="91933" i_length="670"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="91932" e_stop="91922" e_length="11"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91921" i_stop="90509" i_length="1413"/>
          </intron>
          <exon e_serial="5" e_score="0.682">
            <gDNA_exon_boundary e_start="90508" e_stop="90465" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95322" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95318" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95312" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95227" stop="94962"/>
              <exon start="92928" stop="92713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95188" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95152" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95025" stop="94962"/>
              <exon start="92928" stop="92632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92928" stop="92603"/>
              <exon start="91932" stop="91922"/>
              <exon start="90508" stop="90465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAG : AAAGGAGAAAA : AAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAA</gDNA_template>
            <first_frame> R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q   : E  R  R  K  :  K  *  *  *  I  N  E  E  Y  E  K  R  S  *   </first_frame>
            <second_frame>  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  :  K  G  E  K :   N  N  N  K  *  M  K  N  M  K  K  E  V  K  </second_frame>
            <third_frame>   S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R :   K  E  K   : K  I  I  I  N  K  *  R  I  *  K  K  K  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95325" stop="95311"/>
                    <exon start="95230" stop="94962"/>
                    <exon start="92928" stop="92784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="95325" e_stop="95311"/>
            <exon e_start="95230" e_stop="94962"/>
            <exon e_start="92928" e_stop="92589"/>
            <exon e_start="92299" e_stop="92294"/>
            <exon e_start="91932" e_stop="91922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.851" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="0.333"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95325" e_stop="95311" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95230" e_stop="94962" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="92928" e_stop="92589" e_length="340"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.851">
            <gDNA_intron_boundary i_start="92588" i_stop="92300" i_length="289"/>
          </intron>
          <exon e_serial="4" e_score="0.333">
            <gDNA_exon_boundary e_start="92299" e_stop="92294" e_length="6"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="92293" i_stop="91933" i_length="361"/>
          </intron>
          <exon e_serial="5" e_score="0.727">
            <gDNA_exon_boundary e_start="91932" e_stop="91922" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95322" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95318" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95315" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92589"/>
              <exon start="92299" stop="92294"/>
              <exon start="91932" stop="91922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95312" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95227" stop="94962"/>
              <exon start="92928" stop="92713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95188" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95152" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95025" stop="94962"/>
              <exon start="92928" stop="92632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT : TTTCAC : AAAGGAGAAAA</gDNA_template>
            <first_frame> R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q  G  I  N  F  S  :  F  H  :  K  G  E   </first_frame>
            <second_frame>  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  A  S  I  S  L :   F  T :   K  E  K  </second_frame>
            <third_frame>   S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R  H  Q  F  L   : F  S   : Q  R  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95325" stop="95311"/>
                    <exon start="95230" stop="94962"/>
                    <exon start="92928" stop="92784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="95325" e_stop="95311"/>
            <exon e_start="95230" e_stop="94962"/>
            <exon e_start="92928" e_stop="92589"/>
            <exon e_start="91898" e_stop="91881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.862" e_score="0.997"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95325" e_stop="95311" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95230" e_stop="94962" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="92928" e_stop="92589" e_length="340"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.862">
            <gDNA_intron_boundary i_start="92588" i_stop="91899" i_length="690"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="91898" e_stop="91881" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95322" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95318" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95315" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92589"/>
              <exon start="91898" stop="91881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95312" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95227" stop="94962"/>
              <exon start="92928" stop="92713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95188" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95152" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95025" stop="94962"/>
              <exon start="92928" stop="92632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT : GGCCAAAAGTGCAAATTA</gDNA_template>
            <first_frame> R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q  G  I  N  F  S  :  G  Q  K  C  K  L </first_frame>
            <second_frame>  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  A  S  I  S  L :   A  K  S  A  N   </second_frame>
            <third_frame>   S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R  H  Q  F  L   : W  P  K  V  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95325" stop="95311"/>
                    <exon start="95230" stop="94962"/>
                    <exon start="92928" stop="92784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="91861" e_stop="91775"/>
            <exon e_start="91686" e_stop="91427"/>
            <exon e_start="88933" e_stop="88578"/>
            <exon e_start="88372" e_stop="88361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91861" e_stop="91775" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91686" e_stop="91427" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88933" e_stop="88578" e_length="356"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88577" i_stop="88373" i_length="205"/>
          </intron>
          <exon e_serial="4" e_score="0.583">
            <gDNA_exon_boundary e_start="88372" e_stop="88361" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91861" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91829" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91820" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91801" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91788" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91680" stop="91427"/>
              <exon start="88933" stop="88579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91485" stop="91427"/>
              <exon start="88933" stop="88578"/>
              <exon start="88372" stop="88361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC : GGAAAGTGAAAA</gDNA_template>
            <first_frame> A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F   : R  K  V  K  </first_frame>
            <second_frame>  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  :  G  K  *  K </second_frame>
            <third_frame>   K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S :   E  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91798" stop="91775"/>
                    <exon start="91686" stop="91427"/>
                    <exon start="88933" stop="88789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88798" stop="88578"/>
                    <exon start="88372" stop="88363"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSESE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="95333" e_stop="95311"/>
            <exon e_start="95230" e_stop="94962"/>
            <exon e_start="92928" e_stop="92641"/>
            <exon e_start="90516" e_stop="90465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.654"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95333" e_stop="95311" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95230" e_stop="94962" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92928" e_stop="92641" e_length="288"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92640" i_stop="90517" i_length="2124"/>
          </intron>
          <exon e_serial="4" e_score="0.654">
            <gDNA_exon_boundary e_start="90516" e_stop="90465" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95333" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92641"/>
              <exon start="90516" stop="90465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95322" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95318" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95312" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95227" stop="94962"/>
              <exon start="92928" stop="92713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95188" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95152" stop="94962"/>
              <exon start="92928" stop="92646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCCGCCGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA : TAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAA</gDNA_template>
            <first_frame> S  A  A  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y   : I  I  N  K  *  *  *  I  N  E  E  Y  E  K  R  S  *   </first_frame>
            <second_frame>  R  P  P  S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  :  *  L  T  N  N  N  K  *  M  K  N  M  K  K  E  V  K  </second_frame>
            <third_frame>   G  R  R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H :   N  *  Q  I  I  I  N  K  *  R  I  *  K  K  K  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95331" stop="95311"/>
                    <exon start="95230" stop="94962"/>
                    <exon start="92928" stop="92784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="91861" e_stop="91775"/>
            <exon e_start="91686" e_stop="91427"/>
            <exon e_start="88933" e_stop="88626"/>
            <exon e_start="88372" e_stop="88362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91861" e_stop="91775" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="91774" i_stop="91687" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91686" e_stop="91427" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88933" e_stop="88626" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88625" i_stop="88373" i_length="253"/>
          </intron>
          <exon e_serial="4" e_score="0.545">
            <gDNA_exon_boundary e_start="88372" e_stop="88362" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91861" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91820" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91788" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91786" stop="91775"/>
              <exon start="91686" stop="91427"/>
              <exon start="88933" stop="88626"/>
              <exon start="88372" stop="88362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCT : GGAAAGTGAAA</gDNA_template>
            <first_frame> A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V   : W  K  V  K </first_frame>
            <second_frame>  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  :  G  K  *   </second_frame>
            <third_frame>   K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L :   E  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91798" stop="91775"/>
                    <exon start="91686" stop="91427"/>
                    <exon start="88933" stop="88789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="91918" e_stop="91775"/>
            <exon e_start="91683" e_stop="91427"/>
            <exon e_start="88933" e_stop="88519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.808" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="91918" e_stop="91775" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.808">
            <gDNA_intron_boundary i_start="91774" i_stop="91684" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91683" e_stop="91427" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="88933" e_stop="88519" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91918" stop="91775"/>
              <exon start="91683" stop="91427"/>
              <exon start="88933" stop="88751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91839" stop="91775"/>
              <exon start="91683" stop="91427"/>
              <exon start="88933" stop="88796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91790" stop="91775"/>
              <exon start="91683" stop="91427"/>
              <exon start="88933" stop="88519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91680" stop="91427"/>
              <exon start="88933" stop="88579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTA</gDNA_template>
            <first_frame> W  N  V  T  *  N  R  A  K  S  A  N  *  R  E  V  P  H  L  A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F  L  L  W  M  I  S  R  H  I  *  D  *  N  R  Y  N  I  S  *  L </first_frame>
            <second_frame>  G  T  *  P  K  I  G  P  K  V  Q  I  R  E  R  C  H  I  *  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  S  S  G  *  S  Q  D  I  Y  K  I  K  I  D  I  I  S  H  N   </second_frame>
            <third_frame>   E  R  N  L  K  *  G  Q  K  C  K  L  E  R  G  A  T  F  S  K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : *  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S  P  L  D  D  L  K  T  Y  I  R  L  K  *  I  *  Y  L  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91798" stop="91775"/>
                    <exon start="91683" stop="91427"/>
                    <exon start="88933" stop="88789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88798" stop="88538"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSPLDDLKTYIRLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="91699" e_stop="91427"/>
            <exon e_start="88933" e_stop="88578"/>
            <exon e_start="88372" e_stop="88361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91699" e_stop="91427" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91426" i_stop="88934" i_length="2493"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88933" e_stop="88578" e_length="356"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88577" i_stop="88373" i_length="205"/>
          </intron>
          <exon e_serial="3" e_score="0.583">
            <gDNA_exon_boundary e_start="88372" e_stop="88361" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91699" stop="91427"/>
              <exon start="88933" stop="88806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91680" stop="91427"/>
              <exon start="88933" stop="88579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91485" stop="91427"/>
              <exon start="88933" stop="88578"/>
              <exon start="88372" stop="88361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC : GGAAAGTGAAAA</gDNA_template>
            <first_frame> F  *  M  P  A  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S :   E  S  E   </first_frame>
            <second_frame>  F  E  C  Q  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F   : R  K  V  K  </second_frame>
            <third_frame>   L  N  A  S  R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  :  G  K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91698" stop="91427"/>
                    <exon start="88933" stop="88789"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FECQQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="10" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88798" stop="88578"/>
                    <exon start="88372" stop="88363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSESE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="93739" e_stop="93086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="93739" e_stop="93086" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93739" stop="93086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</gDNA_template>
            <first_frame> E  H  *  L  D  C  L  A  P  P  T  S  Q  *  S  R  F  L  S  R  R  L  L  M  R  P  I  R  L  Q  P  S  L  S  L  V  S  I  S  L  R  Q  V  Q  F  C  *  F  H  L  L  H  P  *  S  H  R  I  V  H  L  D  Y  V  K  L  H  V  K  *  A  W  K  N  *  Y  V  L  S  L  *  L  E  R  D  R  *  L  T  C  K  Q  A  *  L  *  V  I  D  N  I  D  H  Y  R  C  S  C  *  L  K  H  P  S  G  R  V  K  H  I  F  M  Y  F  L  L  G  S  E  E  S  L  H  F  L  C  K  F  D  A  A  E  *  N  L  *  W  Y  S  C  F  I  *  C  M  F  L  S  L  F  W  K  *  H  Q  P  L  I  S  I  T  I  Y  L  A  H  F  W  F  K  *  *  S  K  G  Y  L  *  K  K  L  I  L  *  R  E  P  N  V  Q  H  I  Y  H  I  T  F  F  F  L  Q  F  L  Y  A  R  L  M </first_frame>
            <second_frame>  S  I  S  *  I  V  W  L  L  P  L  L  S  E  V  D  S  *  V  G  G  C  *  *  D  Q  L  D  C  N  L  A  F  H  L  C  P  L  V  C  V  K  C  N  F  V  D  F  I  F  Y  I  H  N  H  T  E  *  Y  T  W  I  M  S  N  Y  M  *  N  R  L  G  R  T  N  M  Y  *  V  C  N  L  K  E  I  G  N  *  H  V  S  R  L  S  Y  R  *  L  I  I  L  I  I  I  D  A  L  A  N  *  N  I  L  Q  G  V  *  S  I  F  S  C  I  F  C  W  V  L  K  K  V  F  I  F  Y  V  S  L  M  Q  L  S  R  I  Y  S  G  I  L  V  S  S  D  V  C  F  *  A  C  S  G  S  D  I  N  H  L  L  A  S  P  F  T  *  H  I  F  G  S  S  D  S  P  K  A  T  C  K  R  N  *  Y  S  K  E  N  Q  M  S  N  I  F  I  I  L  L  F  F  F  C  N  F  C  M  R  D  *   </second_frame>
            <third_frame>   A  L  A  R  L  F  G  S  S  H  F  S  V  K  *  I  L  K  *  A  V  V  D  E  T  N  *  T  A  T  *  P  F  T  C  V  H  *  F  A  S  S  A  I  L  L  I  S  S  F  T  S  I  I  T  Q  N  S  T  L  G  L  C  Q  I  T  C  E  I  G  L  E  E  L  I  C  I  K  F  V  T  *  K  R  *  V  T  N  M  *  A  G  L  V  I  G  N  *  *  Y  *  S  L  *  M  L  L  L  T  E  T  S  F  R  A  C  K  A  Y  F  H  V  F  F  V  G  F  *  R  K  S  S  F  F  M  *  V  *  C  S  *  V  E  S  I  V  V  F  L  F  H  L  M  Y  V  S  K  L  V  L  E  V  T  S  T  T  Y  *  H  H  H  L  P  S  T  F  L  V  Q  V  I  V  Q  R  L  L  V  K  E  T  D  T  L  K  R  T  K  C  P  T  Y  L  S  Y  Y  F  F  F  F  A  I  S  V  C  A  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="95345" e_stop="95311"/>
            <exon e_start="95230" e_stop="94962"/>
            <exon e_start="92928" e_stop="92714"/>
            <exon e_start="91932" e_stop="91922"/>
            <exon e_start="90516" e_stop="90471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="0.771"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.771">
            <gDNA_exon_boundary e_start="95345" e_stop="95311" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95310" i_stop="95231" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="95230" e_stop="94962" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94961" i_stop="92929" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="92928" e_stop="92714" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="92713" i_stop="91933" i_length="781"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="91932" e_stop="91922" e_length="11"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91921" i_stop="90517" i_length="1405"/>
          </intron>
          <exon e_serial="5" e_score="0.652">
            <gDNA_exon_boundary e_start="90516" e_stop="90471" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95345" stop="95311"/>
              <exon start="95230" stop="94962"/>
              <exon start="92928" stop="92714"/>
              <exon start="91932" stop="91922"/>
              <exon start="90516" stop="90471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGA : AAAGGAGAAAA : TAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAG</gDNA_template>
            <first_frame> I  H  S  Q  S  A  A  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  :  K  G  E  N :   N  *  Q  I  I  I  N  K  *  R  I  *  K  K  K </first_frame>
            <second_frame>  Y  T  R  S  R  P  P  S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E :   K  E  K   : I  I  N  K  *  *  *  I  N  E  E  Y  E  K  R   </second_frame>
            <third_frame>   T  L  A  V  G  R  R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M   : K  R  R  K  :  *  L  T  N  N  N  K  *  M  K  N  M  K  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95343" stop="95311"/>
                    <exon start="95230" stop="94962"/>
                    <exon start="92928" stop="92784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAVGRRRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="99746" PGL_stop="100171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99746" e_stop="100171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99746" e_stop="100171" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99746" stop="100171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</gDNA_template>
            <first_frame> F  Q  L  Q  I  Y  L  S  I  E  L  F  L  L  H  S  E  L  E  I  S  N  L  S  L  L  N  I  K  S  F  W  I  Q  I  F  L  K  I  K  Y  F  E  F  K  S  L  C  V  Y  S  N  F  Y  F  I  L  N  *  K  F  *  I  *  I  F  *  Y  K  K  K  L  N  C  K  F  *  F  N  Q  T  S  I  *  I  *  G  *  K  S  P  N  T  L  L  L  I  I  S  Y  I  F  I  Y  L  Y  L  S  V  Y  I  P  T  S  Q  V  H  F  I  P  L  P  V  F  Q  E  F  N  I  L  L  Y  F  Y  R  I  N  N  H  F  F  S </first_frame>
            <second_frame>  F  N  Y  K  S  I  *  V  L  S  Y  F  Y  F  I  L  N  *  R  F  R  I  *  V  F  *  I  *  R  V  F  G  S  K  S  F  *  K  *  N  I  S  S  L  N  L  C  A  Y  T  V  I  F  T  L  F  *  I  R  N  F  K  F  K  F  F  S  T  K  K  N  *  I  A  N  F  N  L  I  K  L  Q  Y  K  Y  K  V  K  N  P  R  I  H  F  S  S  S  Y  L  I  Y  L  S  I  Y  I  F  L  Y  I  F  Q  L  L  R  S  T  L  S  L  S  L  F  S  K  N  S  I  S  Y  Y  T  F  I  V  S  I  I  T  F  S   </second_frame>
            <third_frame>   S  T  T  N  L  F  E  Y  *  V  I  F  T  S  F  *  I  R  D  F  E  F  E  S  F  E  Y  K  E  F  L  D  P  N  L  F  E  N  K  I  F  R  V  *  I  F  V  R  I  Q  *  F  L  L  Y  S  K  L  E  I  L  N  L  N  F  L  V  Q  K  K  I  K  L  Q  I  L  I  *  S  N  F  N  I  N  I  R  L  K  I  P  E  Y  T  S  P  H  H  I  L  Y  I  Y  L  F  I  S  F  C  I  Y  S  N  F  S  G  P  L  Y  P  S  P  C  F  P  R  I  Q  Y  L  T  I  L  L  S  Y  Q  *  S  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99963" stop="100169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IANFNLIKLQYKYKVKNPRIHFSSSYLIYLSIYIFLYIFQLLRSTLSLSLFSKNSISYYTFIVSIITFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="101514" PGL_stop="102080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101514" e_stop="102080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="101514" e_stop="102080" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101514" stop="101995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101515" stop="102080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</gDNA_template>
            <first_frame> A  N  W  L  A  *  D  *  S  G  V  S  C  *  L  S  W  Q  Y  V  H  Y  V  Y  L  V  V  G  Y  Y  Y  T  R  I  S  F  L  *  G  T  I  I  G  D  I  *  *  C  N  C  *  E  L  V  V  K  N  A  T  K  N  G  S  Q  I  E  C  Q  T  E  N  S  P  N  I  L  I  L  S  Y  *  R  Y  Y  R  F  A  E  T  K  *  F  L  P  L  N  N  I  L  I  W  F  T  A  A  *  L  V  C  F  L  S  F  F  G  *  F  A  N  *  Q  L  C  W  N  F  I  V  C  L  L  K  *  G  G  L  M  V  C  W  *  V  G  *  L  L  R  N  I  I  K  L  K  V  L  S  W  *  F  D  R  L  I  R  L  A  N  *  L  G  P  I  S  N  L  N  *  R  L  L  H  T  P  K  F  V  G  H  F </first_frame>
            <second_frame>  P  T  G  L  L  E  I  E  V  E  F  H  V  S  Y  L  G  S  M  C  I  M  F  I  W  L  W  D  I  I  I  Q  E  Y  L  F  Y  R  A  Q  L  L  V  I  Y  N  N  A  I  V  R  S  *  *  L  K  M  Q  R  K  M  V  L  K  L  N  A  R  L  K  T  H  L  T  Y  *  S  S  H  T  E  G  T  I  D  L  L  K  Q  S  N  F  Y  P  *  I  T  S  L  Y  G  L  Q  L  H  D  *  S  V  S  C  P  F  L  V  N  L  L  I  N  S  Y  V  G  T  S  L  F  A  Y  *  N  K  E  D  *  W  F  A  G  R  L  V  D  Y  *  E  T  *  *  N  *  K  S  Y  L  G  S  L  I  D  *  L  G  *  Q  I  S  W  A  L  *  V  T  S  I  K  D  C  F  T  H  Q  N  L  W  D  T   </second_frame>
            <third_frame>   Q  L  A  C  L  R  L  K  W  S  F  M  L  A  I  L  A  V  C  A  L  C  L  S  G  C  G  I  L  L  Y  K  N  I  F  F  I  G  H  N  Y  W  *  Y  I  I  M  Q  L  L  G  A  S  S  *  K  C  N  E  K  W  F  S  N  *  M  P  D  *  K  L  T  *  H  T  D  P  L  I  L  K  V  L  *  I  C  *  N  K  V  I  F  T  L  E  *  H  P  Y  M  V  Y  S  C  M  I  S  L  F  L  V  L  F  W  L  I  C  *  L  T  A  M  L  E  L  H  C  L  P  T  K  I  R  R  I  N  G  L  L  V  G  W  L  T  I  E  K  H  N  K  I  K  S  P  I  L  V  V  *  *  I  N  *  V  S  K  L  V  G  P  Y  K  *  P  Q  L  K  I  A  S  H  T  K  I  C  G  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0278J12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 875 chains have been computed
$ 
$ memory statistics:
$ 1857080 bytes spliced alignments in total
$ 619 spliced alignments have been stored
$ 3000 bytes was the average size of a spliced alignment
$ 62872 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 2993 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 989 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-20 08:41:59
-->
