<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:51:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353254" ref_strand="+" ref_description="SGN-E353254 [cTOS-14-F22]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttgcataaatggaatcctccccttttccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="1" stop="1301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="131" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="358" g_stop="519" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="609" g_stop="1005" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="614" r_length="384" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E353254" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="131"/>
          <exon e_start="358" e_stop="519"/>
          <exon e_start="609" e_stop="1005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCT-CCCTTTTCCAAAGTAG</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCCTTTTCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351096" ref_strand="+" ref_description="SGN-E351096 [cTOS-6-N17]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="1" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="131" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="358" g_stop="519" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="609" g_stop="907" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E351096" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="131"/>
          <exon e_start="358" e_stop="519"/>
          <exon e_start="609" e_stop="907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352405" ref_strand="+" ref_description="SGN-E352405 [cTOS-9-N23]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="1" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="131" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="358" g_stop="519" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="609" g_stop="907" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E352405" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="131"/>
          <exon e_start="358" e_stop="519"/>
          <exon e_start="609" e_stop="907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355315" ref_strand="+" ref_description="SGN-E355315 [cTOS-18-C16]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="1" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="131" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="358" g_stop="519" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="609" g_stop="907" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E355315" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="131"/>
          <exon e_start="358" e_stop="519"/>
          <exon e_start="609" e_stop="907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356224" ref_strand="+" ref_description="SGN-E356224 [cTOS-20-N19]">
      <seq>ttgattacagttttgagtgcataggaaatgtctctgttatgaggtctgctttagagtgttgtcacaagggttggggaacctcagtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="1" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64" g_stop="131" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="358" g_stop="519" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="230" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="609" g_stop="907" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="515" r_length="285" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E356224" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64" e_stop="131"/>
          <exon e_start="358" e_stop="519"/>
          <exon e_start="609" e_stop="907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGTAAATATGCTAGTATCTAATCAATAAAATTGTAATTTCAGTTTCCCCACCACGTCTTCACTCCGCTTGAAATTGCTGAGCTTCCCATCAGACGTTCCCCTTTATCTTTCAATATTTTTATTTTCATTTCTCTTCGGGATGCTATTAATGTCTCCACCTTATGAAAAAATTAATCTATTGTACAAGATACTAATGCTGAACATGTCCAATCTTATTGGAATTGCAGGGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGT</genome_strand>
        <mrna_strand>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG..................................................................................................................................................................................................................................GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333615" ref_strand="-" ref_description="SGN-E333615 [cTOD-22-F3]">
      <seq>agtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="72" stop="1274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="372" g_stop="519" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="974" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="500" r_length="352" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E333615" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333615" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="372" e_stop="519"/>
          <exon e_start="609" e_stop="974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</genome_strand>
        <mrna_strand>AGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219563" ref_strand="+" ref_description="SGN-E219563 [cLEL-11-I23](-)">
      <seq>gtgattgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatccagatgacagatgaactctttttnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="73" stop="1172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="373" g_stop="519" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="878" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="403" r_length="256" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="413"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E219563" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="373" e_stop="519"/>
          <exon e_start="609" e_stop="878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>GTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCCAGATGACAGATGAACTCTTTTTNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239074" ref_strand="+" ref_description="SGN-E239074 [cLEL-9-K11](-)">
      <seq>tgtaggtgttgctgcttctggtcaggagatatctacacgtccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtgggcaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatggcggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactaatttccctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttatataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="78" stop="1189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="378" g_stop="519" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="878" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="399" r_length="257" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="429"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E239074" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="378" e_stop="519"/>
          <exon e_start="609" e_stop="878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACT-ATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>TGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGGCAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGGCGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTAATTTCCCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349512" ref_strand="+" ref_description="SGN-E349512 [cTOS-1-O7]">
      <seq>tccatttcagctggtgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaatgttcttactttgaaggctaaaaccatcattactggttttagagtttggcataaaccattgccatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="117" stop="1274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="417" g_stop="519" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="974" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="455" r_length="352" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E349512" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="417" e_stop="519"/>
          <exon e_start="609" e_stop="974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</genome_strand>
        <mrna_strand>TCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219141" ref_strand="+" ref_description="SGN-E219141 [cLEL-11-I23](-)">
      <seq>ggtgactggtcgtgtttggaagggaaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="129" stop="1172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="429" g_stop="519" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="878" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="348" r_length="256" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="358"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E219141" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="429" e_stop="519"/>
          <exon e_start="609" e_stop="878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACTGGTCGTGTTTGGAAGGG-AACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>GGTGACTGGTCGTGTTTGGAAGGGAAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350303" ref_strand="+" ref_description="SGN-E350303 [cTOS-5-A11]">
      <seq>tgactggtcgtgtttggaagggaactgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="131" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="431" g_stop="519" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="903" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="370" r_length="281" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="380"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E350303" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="431" e_stop="519"/>
          <exon e_start="609" e_stop="903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>TGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239282" ref_strand="+" ref_description="SGN-E239282 [cLEL-9-K11](-)">
      <seq>ctgcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcggacataaacaaagctttcgacctgatgcatgacggggactgcctccgtgttgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatggatggtagtttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="155" stop="1189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="455" g_stop="519" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="878" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="321" r_length="256" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E239282" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="455" e_stop="519"/>
          <exon e_start="609" e_stop="878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</genome_strand>
        <mrna_strand>CTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221932" ref_strand="+" ref_description="SGN-E221932 [cLEL-10-G6](-)">
      <seq>gcttttggtggtttcaaaagccgatcacaagttccttccctcgtggacaagtatttaaagaaggaaatcaaggtggatgaatacatcactcataacatgacacttgcgggcataaacaaagctttcgacctgatgcatggcggggactgcctccgtgatgtcctggatatgtttgtttgaatgaagtctgtaggctctttatgtttttgtgctatttctcatacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaactctttttaaatgcatggtagtttattatcttttcaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="157" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="457" g_stop="519" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="609" g_stop="903" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="344" r_length="281" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="358"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E221932" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="457" e_stop="519"/>
          <exon e_start="609" e_stop="903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGTCTGTTATTTCCCTTTTCGATATTTTCTTCTTCCCTTATTATACCATTTAGTCACTATTCATTTATCCAACACTTCCACTACTAATAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG.........................................................................................GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGGCATAAACAAAGCTTTCGACCTGATGCATGGCGGGGACTGCCTCCGTGATGTCCTGGATATGTTTGTTTGAATGAAGTCTGTAGGCTC-------T--TTA-----TGTTTTTGTGCTATTTCTCATACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGCATGGTAGTTTATTATCTTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333619" ref_strand="+" ref_description="SGN-E333619 [cTOD-22-H3]">
      <seq>caaacatggcaatggtttatgccaaactctaaaaccagtaatgatggttttagccttcaaagtaagaacattttacttgaaaagataataaactaccatccatttaaaaagaggtcatctgtcatcctgatcctttttttctcactttctttttattcaacgcataattaggaaggggaaaggtaaataatgtatgagaaatatcacgaaaacataaagagcctacagacttcattcaaactaacatatccaggacaacacggaggcagtccccgtcatgcatcatgtcgaaagctttgttaatgaccacaagagtcatggtatgagtgatgtattcatccaccttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="1274" stop="309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="974" g_stop="609" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E333619" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="974" e_stop="609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGCAATGGTTTATGCCAAACTCTAAAACCAGTAATGATGGTTTTAGCCTTCAAAGTAAGAACATTTTACTTGAAAAGATAATAAACTACCATCCATTTAAAAAGAGTTCATCTGTCATCTTGATCCTTTTTTTCTCACTTTCTTTTTATTCAACACATAATTAGCAAGGGGAAAGGTAAATAGTCTCTGAGAAATAGCACAAAAACAGAAAGTAAGCAACATAAAGAGCCTACAGACTTCATTCATACAAACATATCCAGGACAACACGGAGGCAGTCCCCGTCATGCATCAGGTCGAAAGCTTTGTTTATGTCCGCAAGTGTCATGTTATGAGTGATGTATTCATCCACCTTGATTTC</genome_strand>
        <mrna_strand>CAAACATGGCAATGGTTTATGCCAAACTCTAAAACCAGTAATGATGGTTTTAGCCTTCAAAGTAAGAACATTTTACTTGAAAAGATAATAAACTACCATCCATTTAAAAAGAGGTCATCTGTCATCCTGATCCTTTTTTTCTCACTTTCTTTTTATTCAACGCATAATTAGGAAGGGGAAAGGTAAATAATGTATGAGAAATA--TC----AC-----G-AA--AACATAAAGAGCCTACAGACTTCATTCAAACTAACATATCCAGGACAACACGGAGGCAGTCCCCGTCATGCATCATGTCGAAAGCTTTGTTAATGACCACAAGAGTCATGGTATGAGTGATGTATTCATCCACCTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232485" ref_strand="+" ref_description="SGN-E232485 [cLEL-5-O23](-)">
      <seq>aagctttcgacctgatgcatgtcggggactgcctccgtgttgtcctggatatgtttgtatgaatgaagtctgtaggctctttatgttgcttactttctgtttttgtgctatttctcagagactatttacctttccccttgctaattatgtgttgaataaaaagaaagtgagaaaaaaaggatcaagatgacagatgaacacttttaaaatggacggtagtttattatcttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="364" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="664" g_stop="898" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="236" polyA_stop="252"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E232485" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="664" e_stop="898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAA</genome_strand>
        <mrna_strand>AAGCTTTCGACCTGATGCATGTCGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACACTTTTAAAATGGACGGTAGTTTATTATCTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221527" ref_strand="+" ref_description="SGN-E221527 [cLEL-10-G6](-)">
      <seq>ggggactgcccccgtgttgtcctggatatgtttgtttgaataaagtctgtaggctctttatgtttttgtgctatttctcaaacactatttacctttccccttcctaattatgtgttgaataaaaagaaagtgagaaaagaaggatcaagatgacagatgaactctttttaaatggatggtagtttattatcttttcaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="387" stop="1204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="687" g_stop="903" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="217"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E221527" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="687" e_stop="903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</genome_strand>
        <mrna_strand>GGGGACTGCCCCCGTGTTGTCCTGGATATGTTTGTTTGAATAAAGTCTGTAGGCTC------T---TTA-----TGTTTTTGTGCTATTTCTCAAACACTATTTACCTTTCCCCTTCCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAGAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369319" ref_strand="+" ref_description="SGN-E369319 [TUS-25-E2](-)">
      <seq>gtattatgaggctggtgctggtgtctgtttatccaagcgggatattcttcggtatctgctggaaggaacacctgcttctcatgtggaagactttggtgatgaggagagcgcttctgctcagagttcaaccaagggtagcatttcactagatgtccctggatgggttaaaattaatgagaagacaacactttataatgttctaaaggaaccgcggtgtgtagttcctgggcttcctgtgttttgggttgtctcgaggaactcaagcttctatgatgagttcaaatctggaaattggtcttctccaaaacttccatgaatttgtcgtggagttgcaagtccattttgagttcctactgtcttgcaagtacactcaatgtacaaaacactccgttccgtgtttgataatataactggggttcatttgatataagttcattttgtccatgtagagagcagagtgttagggtacttgctcatattttgtagattagcagctgtgcaaatctctctaaggtttcagttttttgtggatgtaaaattatgggaaggaaggtaattatgtttacctgttaacaaaatgaagcatctttttgtcatttgttgaaggaaattatgggggagaaggtgatcatgtagagaacttaaatatgttatctaatgatttatttcgttgctccatgcccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="4342" stop="2277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4030" g_stop="3892" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="149" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3891" i_stop="3216" i_length="676">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3215" g_stop="3129" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="236" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3128" i_stop="3031" i_length="98">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3030" g_stop="2573" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="694" r_length="458" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E369319" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4030" e_stop="3892"/>
          <exon e_start="3215" e_stop="3129"/>
          <exon e_start="3030" e_stop="2573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACAGCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAGGTACACTTCCCCATCTCTCTATTTCAACTGATGAGAATTAGGGAAGCTTTTCTCTCAAGATTATTGCAATTTCTAGTAGAACTGCTGCCTAGTGTCAGAAACAAGGGATCCATTGTACTAATTCAAAACACAGCAGATTATAGTGTGTGCTCTTCTTTGGTGGTATGGTAGAAGGGATTTCCATTGTTTGGGTTCAGCCTTTCCTTTTTAAAAATAATATTTGAACTTCATCACATTGTTTATTTGAGTATAATGAAACATAATGCAACTTTTCATTTTAAAATATGATGATTTGCACTCCATTGCTGACTTTATATGTCTATGGATGGAATAATATCCTAATAAGAAGTAGTTCATACAACTAGGATGTTTCACTTGTTATATAAAATTGACATGCTATTCAGCAGGTAGATATTACAGTCATGGTTCAAATGTAAAAATGGAGTGTTTGTGCAGTAAAATATTCAATACCCTTAATCTAGAGGCAGATAATGTGCTGTGCCTCTTCTGTTCTGTTAAAAATATAGTAAATGTTGATGCACATAACTCGGTTTTTTCTCCCCCTTTTGCCTTGATTCAATGTGAATGACCTTGTTCAATCTTTTTTTAAGCCTTCACTATCGTTTTATGGACTTATTCTGTTCTTATTTTTTCTTCACTCAATTCTTTTCTGCAGATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTGGTATGAGTTTATTTCCTTAGATGTATTTGCACTCTATGCAGACTGCAGTTCTATCACTCTAATCTAATGTAAGATTATTTTCTTATCCTTTGCTATAGTGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTTGCTCCATGCCCTTACTAATTAT</genome_strand>
        <mrna_strand>GCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACACCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTG..................................................................................................TGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATGATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCCATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTACTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTTGATATAAGTTCATTTTGTCCATGTAGAGAGCAGAGTGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTGAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAGAACTTAAATATGTTATCTAATGATTTATTTCGTTGCTCCATGCCCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303433" ref_strand="-" ref_description="SGN-E303433 [cLEX-2-N16]">
      <seq>catgtggaagactttggtgatgaggagagcgcttctgctcagagttcaaccaagggtagcatttcactagatgtccctggatgggttaaaattaatgagaagacaacactttataatgttctaaaggaaccgcggtgtgtagttcctgggcttcctgtgttttgggttgtctcgaggaactcaagcttctatgatgagttcaaatctggaaattggtcttctccaaaacttccatgaatttgtcgtggagttgcaagtccattttgagttcctactgtcttgcaagtacactcaatgtacaaaacactccgttccgtgtttgataatataactggggttcatttgatataagttcattttgtccatgtagagagcagagtgttagggtacttgctcatattttgtagattagcagctgtgcaaatctctctaaggtttcagttttttgtggatgtaaaattatgggaaggaaggtaattatgtttacctgttaacaaaatgaagcatctttttgtcatttgttgaaggaaattatgggggagaaggtgatcatgtagagaacttaaatatgttatctaatgatttatttcgttgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="4261" stop="2289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3961" g_stop="3892" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3891" i_stop="3216" i_length="676">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3215" g_stop="3129" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="157" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3128" i_stop="3031" i_length="98">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3030" g_stop="2590" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="598" r_length="441" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="608"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E303433" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303433" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3961" e_stop="3892"/>
          <exon e_start="3215" e_stop="3129"/>
          <exon e_start="3030" e_stop="2590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAGGTACACTTCCCCATCTCTCTATTTCAACTGATGAGAATTAGGGAAGCTTTTCTCTCAAGATTATTGCAATTTCTAGTAGAACTGCTGCCTAGTGTCAGAAACAAGGGATCCATTGTACTAATTCAAAACACAGCAGATTATAGTGTGTGCTCTTCTTTGGTGGTATGGTAGAAGGGATTTCCATTGTTTGGGTTCAGCCTTTCCTTTTTAAAAATAATATTTGAACTTCATCACATTGTTTATTTGAGTATAATGAAACATAATGCAACTTTTCATTTTAAAATATGATGATTTGCACTCCATTGCTGACTTTATATGTCTATGGATGGAATAATATCCTAATAAGAAGTAGTTCATACAACTAGGATGTTTCACTTGTTATATAAAATTGACATGCTATTCAGCAGGTAGATATTACAGTCATGGTTCAAATGTAAAAATGGAGTGTTTGTGCAGTAAAATATTCAATACCCTTAATCTAGAGGCAGATAATGTGCTGTGCCTCTTCTGTTCTGTTAAAAATATAGTAAATGTTGATGCACATAACTCGGTTTTTTCTCCCCCTTTTGCCTTGATTCAATGTGAATGACCTTGTTCAATCTTTTTTTAAGCCTTCACTATCGTTTTATGGACTTATTCTGTTCTTATTTTTTCTTCACTCAATTCTTTTCTGCAGATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTGGTATGAGTTTATTTCCTTAGATGTATTTGCACTCTATGCAGACTGCAGTTCTATCACTCTAATCTAATGTAAGATTATTTTCTTATCCTTTGCTATAGTGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTTGCTCC</genome_strand>
        <mrna_strand>CATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTG..................................................................................................TGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATGATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCCATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTACTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTTGATATAAGTTCATTTTGTCCATGTAGAGAGCAGAGTGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTGAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAGAACTTAAATATGTTATCTAATGATTTATTTCGTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745973" ref_strand="+" ref_description="SGN-E745973 [GI|47105429]">
      <seq>gacatacaagtaccggcaataaaagcttaacaatggcgttatggatggaggcaggttctgaacctaaaacagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctactgcttttgaacttaaggaactaggtaatgaacatgtcaagaaagggaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttttctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatcaagtgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagagtctaaagcagtatcttctgctaagaccattgtttctgcatttgagactagaggattgaagattgcgaagcccatgtatcaagaactcactggactaagaaaaccaacattagacaaaaataatattcttcattgggcagttcttcttctgtatccagaggtcatgtccagtgacttcatagaggagttctgtgagaccgacatgttttcagctcatcttgatatgatgttttcagaaggttgtccacctcttccttgggacaaagaaaatgcttacactcgtgatgctgttgagttgtattatgaggctggtgctggtgtctgtttatccaagcgggatattcttcggtatctgctggaaggaacagctgcttctcatgtggaagactttggtgatgaggagagcgcttctgctcagagttcaaccaagggtagcatttcacaagatgtccctggatgggttaaaattaatgagaagacaacactttataatgttctaaaggaaccgcggtgtgtagttcctgggcttcctgtgttttgggttgtctcgaggaactcaagcttctataatgagttcaaatctggaaattggtcttctccaaaacttctatgaatttgtcgtggagttgcaagtccattttgagttcctattgtcttgcaagtacactcaatgtacaaaacactccgttccgtgtttgataatataactggggttcattcgatataagttcattttgtccatgtagagagcggagcgttagggtacttgctcatattttgtagattagcagctgtgcaaatctctctaaggtttcagttttttgtggatgtaaaattatgggaaggaaggtaattatgtttacctgttaacaaaatgaagcatctttttgtcatttgttaaaggaaattatgggggagaaggtgatcatgtagaaaacttaaatatgttatcttatgatttatttcgttgcccagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10148" stop="2289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9849" g_stop="9713" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="350" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="542" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5787" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="743" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5786" i_stop="5622" i_length="165">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5621" g_stop="5541" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="824" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5540" i_stop="4031" i_length="1510">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4030" g_stop="3892" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="963" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3891" i_stop="3216" i_length="676">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3215" g_stop="3129" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1050" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3128" i_stop="3031" i_length="98">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.688" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3030" g_stop="2595" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1051" r_stop="1486" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1491" polyA_stop="1505"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E745973" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1486</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9849" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5787"/>
          <exon e_start="5621" e_stop="5541"/>
          <exon e_start="4030" e_stop="3892"/>
          <exon e_start="3215" e_stop="3129"/>
          <exon e_start="3030" e_stop="2595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATACAAGTACCGGCAATAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATGATATCCTTTGTTATATATAGATACAAAAATGACAAACTCAAATTGTTAAACCAAATGTGATTCTCTCTGTGTTATCACCAGCTTGACTATCATTCTTATGTAACTAAAGCAAACTATTGTTTTTCCATTATCTTGAAGGATTTTGTTCATCCTTAGCTTCCGCACATGTTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATGAGGTATATAATATTACATTATCTATCGTTGCTTTATTTTTTGTACTTCTTCCATTTCTCATGTTGTTCGGAGAATCACCCAATTGCATATTCAAAAGCATCCACTGGGCTCCATTGAACATGATATTCCACTACATAGATGGACAACATACTGCTGTGTGTTCAAAATCTGGCACATTAACTTAAAAAGATTTTCATTACAATGAAGTCTAAATAAAAAGACACTCCTATTGTTGTTGATTGAATTTGTGGTTTGGCTTGACAAAATTAATAGGATTACTGCTGAACTTTTTCATGTTTGAACTTTGAAGTCAATTGAATAAATATGTGTAGGTACAACTTGCTTTGTGGTTATGTATGATCTGGTTGGCAAATTGAAAGTAGGCATCAGAGTAGATCTCTACTAAAAAGTCAAATAACACCCTAAATGAAACTACATTACTTTGCATCAGTCTAAGAGGTGCATTGCCCTAGAATTTTTGATCATTTGTACTTCACAAGGGAATGGCAAGCCTTGTGAAAAAATCTATTATGAAATTGGTCATATAGCCACCACATTTAATTGAGAATGAAGGAACTTTAGATACGTAGTAGCGTTATGTAGGAGGCTGGGGCACCGGCCTCTTTAGGACTTGAAATATTTCATCTGGGTAGTGTAATCAGTTTTATAAACTGCTTATTCATTCCATTTTTGTGCCCCCCATAAGATGGAGGAATCAGGATTTGTTTTGTTTACAGTGTTGTCCATTGTTAAGTAGTCTTTGATACTCATCTAAAGGGAAAATATTCCATGAGAGATCATTTTTGTACCTTTATGTTCACATGATTATTAAGAAATATTGCATATCATAAAGCTGTCATGTTGAGTTGCTGTTCATTTTTTTTTCTGCGCTTGCTTTTTGGTTGATGCTGGCCAACTGGAACTTTTTACTGACTTCATGATAGTCTCCTGGGAGTACTACATAATTTTCCCATTTTCGACTGACTTCATGATAGTCTCCTGGGAGTACTACATAATTTTCCTATTTTCTACTGACTTTGTAGTCCAAATGATAGCAACTGTGCAGTTTCTGAATGCTCGTATAATGTGCTTGAGTTATTGGGGTAAAGACTGGGTTCTAGATTTGATATTTCATCCTTCAGTCATTTATTCTATCCTTAGGTTAGATGTCTGACTAGGTGTAGATTGTTAAGGTGGTTTTTGATAATTATTATGGTCCCTATTGATACATCTTTCGATCCTCTTAACTACACTTACTTAAGGTCGTGTAGTAGACTGGTGAGGCCAAGAATAATCCAATATTTGTCTAATATCTGTTTGACTCGAATTTTCATGCCAAATATGCAATTTCATTGGTAACTGTTGTAGTTGATTAGAGGGTTTCGCAATAGTGTGTCTATCAGGGATCATCTGTTAGTTTCCGGTTAATAAGCTCTTAGTGCTTTCTTGTTTAGTGCCACCAGTTGATGTTGCTGTAATATGCTTCTCTGTTCTGAACTTGTGATTGAGCAGGCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACAGCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAGGTACACTTCCCCATCTCTCTATTTCAACTGATGAGAATTAGGGAAGCTTTTCTCTCAAGATTATTGCAATTTCTAGTAGAACTGCTGCCTAGTGTCAGAAACAAGGGATCCATTGTACTAATTCAAAACACAGCAGATTATAGTGTGTGCTCTTCTTTGGTGGTATGGTAGAAGGGATTTCCATTGTTTGGGTTCAGCCTTTCCTTTTTAAAAATAATATTTGAACTTCATCACATTGTTTATTTGAGTATAATGAAACATAATGCAACTTTTCATTTTAAAATATGATGATTTGCACTCCATTGCTGACTTTATATGTCTATGGATGGAATAATATCCTAATAAGAAGTAGTTCATACAACTAGGATGTTTCACTTGTTATATAAAATTGACATGCTATTCAGCAGGTAGATATTACAGTCATGGTTCAAATGTAAAAATGGAGTGTTTGTGCAGTAAAATATTCAATACCCTTAATCTAGAGGCAGATAATGTGCTGTGCCTCTTCTGTTCTGTTAAAAATATAGTAAATGTTGATGCACATAACTCGGTTTTTTCTCCCCCTTTTGCCTTGATTCAATGTGAATGACCTTGTTCAATCTTTTTTTAAGCCTTCACTATCGTTTTATGGACTTATTCTGTTCTTATTTTTTCTTCACTCAATTCTTTTCTGCAGATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTGGTATGAGTTTATTTCCTTAGATGTATTTGCACTCTATGCAGACTGCAGTTCTATCACTCTAATCTAATGTAAGATTATTTTCTTATCCTTTGCTATAGTGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTT</genome_strand>
        <mrna_strand>GACATACAAGTACCGGCAATAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATG.....................................................................................................................................................................ATGTTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACAGCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTG..................................................................................................TGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221336" ref_strand="+" ref_description="SGN-E221336 [cLEL-22-A16](-)">
      <seq>tcaaatctggaaattggtcttctccaaaacttccatgaatttgtcgtggagttgcaagtccattttgagttcctactgtcttgcaagtacactcaatgtacaaaacactccgttccgtgtttgataatataactggggttcatttgatataagttcattttgtccatgtaaagagcagagtgttaggggacctgctcatattttgtagattagcagctgtgcaaatctctctaaggtttcagttttttgtggatgtaaaattatgggaaggaaggtaattatgtttacctgttaacaaaatgaagcatctttttgtcatttgttgaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="3288" stop="2357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2988" g_stop="2658" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="357"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E221336" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2988" e_stop="2658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAA</genome_strand>
        <mrna_strand>TCAAATCTGGAAATTGGTCTTCTCCAAAACTTCCATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTACTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTTGATATAAGTTCATTTTGTCCATGTAAAGAGCAGAGTGTTAGGGGACCTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261762" ref_strand="+" ref_description="SGN-E261762 [cLEG-61-P12]">
      <seq>gctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgagactagagggattgaagattgcgaagcccatgtatcaagaactcactggactaagaaaaccaacattagacaaaaataatattcttcattgggcagttcttcttctgtatccagaggtcatgtccagtgacttcatagaagagttctgtgagaccgacatgttttcagctcatcttgatatgatgtttttcagaaggttgtccacctcttccttgggacaaagaaaatgcttacactcgtgatgctgttgagttgaattatgaagcctggtgctggtgtctgtttatccaagcgggatattcttcggtatctgctggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10066" stop="3676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9766" g_stop="9713" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="267" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="459" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5787" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="661" r_length="202" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5786" i_stop="5622" i_length="165">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5621" g_stop="5541" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="744" r_length="83" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5540" i_stop="4031" i_length="1510">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4030" g_stop="3976" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="799" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E261762" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9766" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5787"/>
          <exon e_start="5621" e_stop="5541"/>
          <exon e_start="4030" e_stop="3976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGA-GGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATGATATCCTTTGTTATATATAGATACAAAAATGACAAACTCAAATTGTTAAACCAAATGTGATTCTCTCTGTGTTATCACCAGCTTGACTATCATTCTTATGTAACTAAAGCAAACTATTGTTTTTCCATTATCTTGAAGGATTTTGTTCATCCTTAGCTTCCGCACATG-TTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATG-AGGTATATAATATTACATTATCTATCGTTGCTTTATTTTTTGTACTTCTTCCATTTCTCATGTTGTTCGGAGAATCACCCAATTGCATATTCAAAAGCATCCACTGGGCTCCATTGAACATGATATTCCACTACATAGATGGACAACATACTGCTGTGTGTTCAAAATCTGGCACATTAACTTAAAAAGATTTTCATTACAATGAAGTCTAAATAAAAAGACACTCCTATTGTTGTTGATTGAATTTGTGGTTTGGCTTGACAAAATTAATAGGATTACTGCTGAACTTTTTCATGTTTGAACTTTGAAGTCAATTGAATAAATATGTGTAGGTACAACTTGCTTTGTGGTTATGTATGATCTGGTTGGCAAATTGAAAGTAGGCATCAGAGTAGATCTCTACTAAAAAGTCAAATAACACCCTAAATGAAACTACATTACTTTGCATCAGTCTAAGAGGTGCATTGCCCTAGAATTTTTGATCATTTGTACTTCACAAGGGAATGGCAAGCCTTGTGAAAAAATCTATTATGAAATTGGTCATATAGCCACCACATTTAATTGAGAATGAAGGAACTTTAGATACGTAGTAGCGTTATGTAGGAGGCTGGGGCACCGGCCTCTTTAGGACTTGAAATATTTCATCTGGGTAGTGTAATCAGTTTTATAAACTGCTTATTCATTCCATTTTTGTGCCCCCCATAAGATGGAGGAATCAGGATTTGTTTTGTTTACAGTGTTGTCCATTGTTAAGTAGTCTTTGATACTCATCTAAAGGGAAAATATTCCATGAGAGATCATTTTTGTACCTTTATGTTCACATGATTATTAAGAAATATTGCATATCATAAAGCTGTCATGTTGAGTTGCTGTTCATTTTTTTTTCTGCGCTTGCTTTTTGGTTGATGCTGGCCAACTGGAACTTTTTACTGACTTCATGATAGTCTCCTGGGAGTACTACATAATTTTCCCATTTTCGACTGACTTCATGATAGTCTCCTGGGAGTACTACATAATTTTCCTATTTTCTACTGACTTTGTAGTCCAAATGATAGCAACTGTGCAGTTTCTGAATGCTCGTATAATGTGCTTGAGTTATTGGGGTAAAGACTGGGTTCTAGATTTGATATTTCATCCTTCAGTCATTTATTCTATCCTTAGGTTAGATGTCTGACTAGGTGTAGATTGTTAAGGTGGTTTTTGATAATTATTATGGTCCCTATTGATACATCTTTCGATCCTCTTAACTACACTTACTTAAGGTCGTGTAGTAGACTGGTGAGGCCAAGAATAATCCAATATTTGTCTAATATCTGTTTGACTCGAATTTTCATGCCAAATATGCAATTTCATTGGTAACTGTTGTAGTTGATTAGAGGGTTTCGCAATAGTGTGTCTATCAGGGATCATCTGTTAGTTTCCGGTTAATAAGCTCTTAGTGCTTTCTTGTTTAGTGCCACCAGTTGATGTTGCTGTAATATGCTTCTCTGTTCTGAACTTGTGATTGAGCAGGCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAG</genome_strand>
        <mrna_strand>GCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAGACTAGAGGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAAGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATG.....................................................................................................................................................................ATGTTTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGAATTATGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275025" ref_strand="+" ref_description="SGN-E275025 [cLEN-16-F12]">
      <seq>agaatgctttaagtgatgctgagcatgcaattctctattcaaacagagctcatgtcaatcttgtcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgagactagaggattgaagattgcgaagcccatgtatcaagaactcactggactaagaaaaccaacattagacaaaaataatattcttcattgggcagttcttcttctgtatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="6798" stop="5555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6498" g_stop="6365" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="326" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5987" g_stop="5855" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="459" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E275025" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6498" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAG</genome_strand>
        <mrna_strand>AGAATGCTTTAAGTGATGCTGAGCATGCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTGTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334596" ref_strand="+" ref_description="SGN-E334596 [cTOD-23-O19]">
      <seq>aaagcttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgagactagaggattgaagattgcgaagcccatgtatcaagaactcactggactaagaaaacaacattagacaaaaataatattcttcattgggcagttcttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10128" stop="5563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9828" g_stop="9713" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="329" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="521" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5863" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="645" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E334596" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9828" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCT</genome_strand>
        <mrna_strand>AAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAA-CAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342484" ref_strand="+" ref_description="SGN-E342484 [cTOF-8-H7]">
      <seq>cttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatgggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgagactagaggattgaaagattgcgaagcccatgtatcaagaactcactggactaagaaaaccaacattagaacaaaatatattcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10124" stop="5580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9824" g_stop="9713" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="325" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="518" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5880" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="626" r_length="108" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E342484" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9824" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAAT-GGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGAGGATTG-AAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCAT</genome_strand>
        <mrna_strand>CTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAGACTAGAGGATTGAAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGAACAAAAT-ATATTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369320" ref_strand="+" ref_description="SGN-E369320 [TUS-25-E2]">
      <seq>ggcaatcaaaagcttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgagactagaggattgaagattgcgaagcccatgtatcaagaactcactggactaagaaaaccaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10135" stop="5602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9835" g_stop="9713" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="337" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="529" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5902" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="615" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E369320" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9835" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAT-AAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATT</genome_strand>
        <mrna_strand>GGCAATCAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247407" ref_strand="+" ref_description="SGN-E247407 [cLEF-46-P19]">
      <seq>ggcaatcaaaagcttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaaaggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgctaagaccattgtttctgcattcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10135" stop="5667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9835" g_stop="9713" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="337" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6066" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="529" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5987" g_stop="5967" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="550" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E247407" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9835" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6066"/>
          <exon e_start="5987" e_stop="5967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAT-AAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAGGTCTACTACTATATTTTTATCTGCATATAAAAATTGTTCATTCTGGTAGCTTCTCACTACTTATTGTGAATTATACAGACCATTGTTTCTGCATTTGAG</genome_strand>
        <mrna_strand>GGCAATCAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAAGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCTAAG..............................................................................ACCATTGTTTCTGCATTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311979" ref_strand="+" ref_description="SGN-E311979 [cTOA-16-A5]">
      <seq>aagttccggcaatcaaaagcttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaagggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10142" stop="5769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9842" g_stop="9713" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="344" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6069" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="533" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E311979" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9842" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACCGGCAAT-AAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCT</genome_strand>
        <mrna_strand>AAGTTCCGGCAATCAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAGGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309514" ref_strand="+" ref_description="SGN-E309514 [cTOA-3-H23]">
      <seq>tcaaaagcttaacaatggcgttatgggtggaggcaggttggtgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtctaaagcagtatcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10129" stop="5772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9831" g_stop="9713" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="333" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6072" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="519" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E309514" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9831" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTT-CTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCT</genome_strand>
        <mrna_strand>TCAAAAGCTTAACAATGGCGTTATGGGTGGAGGCAGGTTGGTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCTAAAGCAGTATCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323717" ref_strand="+" ref_description="SGN-E323717 [cTOC-2-D18]">
      <seq>tccggcaatcaaaagcttaacaatggcgttatggatggaggcaggttctgaacctaaatcagagaaagaattggctgaccttgatgctatctccgctctcaaagagtctaccgcttttgaacttaaggaactaggtaatgaacatgtcaagaaaggcaagaagcattactcggatgctattgattgctatacaagggcaataaatcagaatgctttaagtgatgctgagcagtcaattctctattcaaacagagctcatgtcaatcttctcttggggaattatagacgtgcactccaggatgcggaagatgcaatcaaattaaatccaagtagtgttaaggctctttatcgagcagcaaaagcatcattttctctgaatcttctggctgaagcaaaagggctctgcgagaaaggtcttcagctctcgtcatctaatgaagaactgaagaagcttgctaggcacatcgatatacagaaatcagaaatggatcgtcgtgatgctgaagtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="10137" stop="5787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9838" g_stop="9713" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6577" g_stop="6365" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="340" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6257" g_stop="6087" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="511" r_length="171" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E323717" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9838" e_stop="9713"/>
          <exon e_start="6577" e_stop="6365"/>
          <exon e_start="6257" e_stop="6087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGCAAT-AAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAGGTTTTTATTTTTATACTTCTTTACTGTACTTTGATAACGCTAATTCATTTGTGTTCCGTTCATGCAATCGTATGTAGAACAACTTGTATCACTCTGGTTTGTTATTTTGTTCCTATTGCTGCCTGATGAAGCACTTTGGTTCAAATTTTATGCCTTGTGTTGTTGTCTTTCAAGAAATATGGTTCATAAAATTGTTTGCCGGAAAAATTGTTATTCTGGACAACAGTAGAATTTGTTTAACAAGTAAATTAATTTAAGGGTGGTGAATTATGGTGATTAAGTCCAGAGTAGTTAACAAAGTAGTGATTGAGTACAAGAATGTTAACGGCTCAAAGGGGAAGAAAAATAAAAGGGAAGCAAAGTTGGAGAGTCCTCTTGTGATGTTTTCCAGAGATGTTCCTCCCTCTTTTCACGACTAGTTCTGTGAAGGCTACTTTGAAGCACCTGGCTGAGCTCCCATGCTGGGCTCGAGGTTGATTGCGAGCAGGCTGCTGGACTCGAGGCTGACTACTGGTCTGCGGATGGCCATTATGAGCATACTTCAGCGGGAAAGTGATCGTTTTCAGGTAAAGATCCCACAGGTTTCTCTGTTACAGAGCGGCTTTGGTTGTAGCGAGGTGAAATCGGTCCAAATCATACTAGGGGCTGCGATCCCAGTATTTGCTGGGTTTGAGGCAATAAGGATCAACGTCTCTTCGATTCCAATTCAGCCTTCTGTCATAGTCTGGTTCATCTGTTAGCAAAACGTGGATTTTTTACTTGTATATTTGTATTAAGGGAAACAAGTAGAAAATCCATGAAAAAAAGAAAAAAGAGAGAAGAGAAGACAGGAGGCAAAAAGAAGAGCTTTACCATTTCGTCTATTATAGTACAGATGAAGTGAATCAGTACCATTTGATACTAATTAACATAGGACACAATATTTCCTCGATACAAATGGAGTACTACAAGAACTTCTGTTCCTATGGGGCATGGGCAGAGGAAAAATCTTAGATTGCGGAGTGCCTTTTTGTTGCCTTGTACCAGCAGAACCTTCAAGTTGCTTTCTCTCATTTCCCCTTCTTGTTTTCTTTAATGTTGTTAATGGTGGTGTTCAGACAAGCTTTTGCACACGTCGACTATTCTAGTCCTCCCATTCCCTTTCTTTTCTTTTTTTCTGTCTCATATTTTTCCAAAAAAAAAAATGTTCCAAATACAACAAGCCATAGCATTCCTGTATGTGTCTTCTTCTTCTTCTTTTTTTCCGGGTTTCTCAGTTTAAATATGATTTTTTCTTATGAAAGTCATGTTTGATTGTTCAAACTTCAATCTGTAAGTGAATACACTAGCTTTCTCTAAACTATATTGATGAGGTATGCTAGAAATTAGGGATGTGCTAAAGTCGAACCAACTGATAAACTGAATCGAAAAAAGTGCTATTAGTTTATGGTTATTGGGTTATTGGATTAACGAGTTCGTAATGATTTTATAAAAAAAAGTTATTGGGTTATTGGTTCTGGTTCTGTTCTTGAACAAATTGGTTATTGGGTAGATCAATAACCTGATAACCCATTAAGACTGTAGTAATTACTACTTTACTCGCTCATAAATATTAAATACTAGTTCTAGACATATCGTAAATGTGAAATTTGATACAATATGTTATAGGACTTTATTTGTGTTATGAACTAAAAATCAAAACATACCAAAAGAGTATAAACTAAGTTATCAGTTATCTTACAACAGCATATATACACAAAGATGAACCATGAGTTTCTTGAAGCACCTAAACTTGAAGCACTTGTTTGAACCATGTGTTTGTGTATTTAAAGTAGTAAATAATGACTTTTTGTATGTATTTGATAATTATCATGTGAATTTAGTTAATGCTAATCAATAAAATATTGAATGCAACTTTAACTTTACCTTAATCAAAGTAAATATTGAATGTAACTTTTTAAATTATTCTCCTTTTAGTGTACTGATAATAGAAAGTTATATGAATTAAAATAATGTAATTGGAGTTGGATAAACCTCAAATAAATATGGAGGCATACATTTATATTTCATGATAAATTATGGGTAAATGTTATAATATAAATTAGCGAAATTGGAATGCCAGTAATTCCAATAGATCAGTTGCATATTTTTCATAATAACTATTGTATCAGTAGATCAATACACCCTTCCATATGTTACTGATAACTATTATTTGAAATATTATCATTTCCTATTCCAATTATATTATTGATTTGGTCCTCTAAGTCTTTACTGTTACAAGAGTAATTTTTATGACAGCCTTTACCCTTAATATGATAATCAATTATCAATATGATAATCAATTAGATAATTAACTGCTCACGTTGTAACTTACAGTTGGATATGGTCACATTATGACTCTTTATCTTGCAATTAAGTTGGGAGGTGAAAAAGGCTGTGAAAATAATTTGATTAATTACTATTTAACTTATTAGATGTTTTATAATATTTCAAATTAGGACAGGCGTAAATGATATTTGAACTTTTCAGTTTGTCGCTTCCCACTTTTGGTAAATAGGATATGATGATATAATGATTAACCTCAATACCTTACTAGTTACTGGTTTTGCCCTTTAACCTTCAATCTACACTTAGTGACTTTGAGTTCATAATTTCACATTATTCAAAACGTTGAAACCTAAAGTAAGAACCTTATTCCTCTTAATTTCTCTCTGGCTTACACTCATATAGTTATTTTCTTGTTAGTTATTGCTATTTCTATTTTATGAGTAATAGGAAAGTTACATTATTGTCTTGTCGTGTCAAATTGTTGGAGAAGTCATATATTTGTTTTATAAGCATTTCTTATTGGTTAAACCGGAATTAAAATTGTCAAGGACCAAAACCAATAAACCGAAGACCTATAAAAAAAATATCTTAATGGTTTAGTGTTTTTTAAAAATCAACCAACCAATGCACGCCCCTAGTAGAAATGTTATAAGCAATGCCCTTCTTGGACAGCTACATGCACTTCATGGCAATTGTTATTTCCTTCCTTTTGGATGTCTACTGCTTAGATCACCCTTTGTGCTTTTCCTTGATTATAGGGGGGCAAGCGTCTTTGTTGCCCAAATCATCATGAGAAAATGATAAGTTGGCTGTCCTTCTACATTGCAGGAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAGGTATGCTTTTTCTTACTATTCATCATGTATCAAATCACAGGCCATAGTTTCCTGCCAGTGCTGCATGTTCTTGGCGTATGTGACATCTAGTTGTACTTTATTCATAGGCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCT</genome_strand>
        <mrna_strand>TCCGGCAATCAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAATCAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACCGCTTTTGAACTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGGTAATGAACATGTCAAGAAAGGCAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG...........................................................................................................GCTCTTTATCGAGCAGCAAAAGCATCATTTTCTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCTAATGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="19432" stop="18502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19132" g_stop="18802" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19132" e_stop="18802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAACTCATATCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTACACACCTTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGGAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAATCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="18532" stop="19792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18832" g_stop="19492" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18832" e_stop="19492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTCCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTAATAGTTGAAAAGGTGTGTAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGATATGAGTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCTACTCCAGTTCGTATCATCTCCTTCCTTCGCGCTAAGAAAATGGTTAGAAAGGGTTGTTTAGCTTTCTTCGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGACGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGATCTTCCTGGTATGCCACCGGATAGGGATATCGACTTTTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="21237" stop="20051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20937" g_stop="20351" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20937" e_stop="20351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTTAGTCTCTCCTCGCAACGCCTTATCTCGGATCCGGATCAGTTTCTCATCATTAAATTGCTTTCCCTTAATCTTGTCAAGAAAGAAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACAACATTAGCTTTTCCTGGATGATACAATATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGCCTTAGATTCAAATCTTTCTGAGTAAAGACATATTGTAGGCTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="21237" stop="20051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20937" g_stop="20351" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20937" e_stop="20351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTTAGTCTCTCCTCGCAACGCCTTATCTCGGATCCGGATCAGTTTCTCATCATTAAATTGCTTTCCCTTAATCTTGTCAAGAAAGAAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACAACATTAGCTTTTCCTGGATGATACAATATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGCCTTAGATTCAAATCTTTCTGAGTAAAGACATATTGTAGGCTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="21237" stop="20084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20937" g_stop="20384" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20937" e_stop="20384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTTAGTCTCTCCTCGCAACGCCTTATCTCGGATCCGGATCAGTTTCTCATCATTAAATTGCTTTCCCTTAATCTTGTCAAGAAAGAAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACAACATTAGCTTTTCCTGGATGATACAATATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGCCTTAGATTCAAATCTTTCTGAGTAAAGACATATTGTAGGCTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="21682" stop="20541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21382" g_stop="20841" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21382" e_stop="20841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAAGTTAGAAGTAAACTGTGTACCTCTATCTGATATGATGGAGAGTGGGACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAGTCGGTCAACGATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAGTCAACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTTCTTTAGGTCATGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214439" ref_strand="+" ref_description="SGN-E214439 [cLEC-77-F7]">
      <seq>cctgaagcttctcccatagattctggatattttgttgacttctgaatgttggtggtgtccttgacgaaacatggccttctggtttcttcaaagttttttcttttaaaaacaaaattaggaatgcttctcccatttaaagggtagcaaggtacatagggttaaagagttagggttaacaggttaagttttcttctggtgtacaactgcttttgtttctgaaacacaaacaaatccattcacctgtaaatggtactaatctcttatgttatgctatctaaatgacagctttttttctcaaaaactgattctagttaagagatgtgatatacaattgtcaatttttatgaatatctgtggcctggaacttattggttttgtgggttttaccagttttgcaacagttaaaaaattcatctgtacttggtgctaatttcttatgtaaagctaacttaatagcagctgttttcacttgaaaatggactagtcaagatatgatttacaatttttttttaaaaatggatatctgtgctttgcctggacctcaatggttttattgatgactangtttgtaacagttgaggaattaaccttgtatctgctgggcaacaacactgatggttaggtgattcntgcctgctgtctaagtcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="37309" stop="36058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37009" g_stop="36358" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E214439" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37009" e_stop="36358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAAGCTTCTCCCATAGATTCTGGATATTTTGTTGACTTCTGAATGTTGGTGGTGTCCTTGACGAAACATGGCCTTCTGGTTTCTTCAAAGTTTTTTCTTTTAAAAACAAAATTAGGAATGCTTCTCCCATTTAAAGGGTAGCAAGGTACATAGGGTTAAAGAATTAGGGTTAACAGGTTCAGTTTTCTTCTGGTGTA-AACTGCTTTTGTTTCTGAAACACAAACAAATCCATTCACCTGTAAATGGTACTAATCTCTTATGTTATGCTATCTAAATGACAGCTTTTTTTTCTCAAAAACTGATTCTAGTTAAGAGATGTGATATACAATTGTCAATTTTTATGAATATCTGTGGCCTGGAACTTATTGGTTTTGTGGGTTTTACCAGTTTTGCAACAGTTAAAAAATTCATCTGTACTTGGTGCTAATTTCTTATGTAAAGCTAACTTAATAGCAGCTGTTTTCACTTGAAAATGGACTAGTCAAGATATGATTTACAATTTTTTTTTAAAAATGGATATCTGTGCTTTGCCTGGACCTCAATGGTTTTATTGATGACTAGTTTTGTAACAGTTGAGGAATTAACCTTGTATTTGCTGGGCAACAACACTGATGGTTAGGTGATTCTTGCCTGCTGTCGAAGTCTTGCT</genome_strand>
        <mrna_strand>CCTGAAGCTTCTCCCATAGATTCTGGATATTTTGTTGACTTCTGAATGTTGGTGGTGTCCTTGACGAAACATGGCCTTCTGGTTTCTTCAAAGTTTTTTCTTTTAAAAACAAAATTAGGAATGCTTCTCCCATTTAAAGGGTAGCAAGGTACATAGGGTTAAAGAGTTAGGGTTAACAGGTTAAGTTTTCTTCTGGTGTACAACTGCTTTTGTTTCTGAAACACAAACAAATCCATTCACCTGTAAATGGTACTAATCTCTTATGTTATGCTATCTAAATGACAGC-TTTTTTTCTCAAAAACTGATTCTAGTTAAGAGATGTGATATACAATTGTCAATTTTTATGAATATCTGTGGCCTGGAACTTATTGGTTTTGTGGGTTTTACCAGTTTTGCAACAGTTAAAAAATTCATCTGTACTTGGTGCTAATTTCTTATGTAAAGCTAACTTAATAGCAGCTGTTTTCACTTGAAAATGGACTAGTCAAGATATGATTTACAATTTTTTTTTAAAAATGGATATCTGTGCTTTGCCTGGACCTCAATGGTTTTATTGATGACTANGTTTGTAACAGTTGAGGAATTAACCTTGTATCTGCTGGGCAACAACACTGATGGTTAGGTGATTCNTGCCTGCTGTCTAAGTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342749" ref_strand="+" ref_description="SGN-E342749 [cTOF-7-A20]">
      <seq>aaacttggtcttgactcttctaataaatgtgaatttgttaaatatcttgaacagggtacagatgatattacaaacgataatggtataccggaactattgaactggtggagaaatcgtggagctcaatatccaaaacttagtaggatggtgaaggatgtgcttgcaattcaaggatcatcagtagcttcggaggcagctttcagcgcggcaagatttcaaattggagaccacagatattcgttagcagaagacagcctggagatatcagtgttatttagagattggataaatgctgagcgtagaaatcaaggacttccaaagttagatagtcaatttgaacttttcatagattcaactattggatgtggtagtgacgatggcatcgaaattcaagatcgtcaacgagctttaccaagaccagaagttgatcacaatcaatccctagctgagttagaaagaggatttacgggactatacaactattagtattacattcgagacatagttgaaacagaacccttcctagaaggtggctgcgtaagctatgtactctactaatagttgtaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="72664" stop="71490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72364" g_stop="71790" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E342749" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72364" e_stop="71790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGAAGATATCAGTGTTATTTAGAGACTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCGGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</genome_strand>
        <mrna_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279240" ref_strand="+" ref_description="SGN-E279240 [cLEL-4-M21](-)">
      <seq>attaataccataatatctttcatagagttcatggggagtcggactatctgaattaatatttataggaccgggacgggaaaaactagtttcattcacatgcgtaaattcatctgtatttattctaacaagaggaattttagatttagacgaactagcacctttgttagtttttttaactaatttttttactgattctactagaccttttttacttccactttttttagaagactccatgatataaaattataaattataaaatacgaaacttaacaagaacaacttacaagttaaataataaatacaaaaaataaatataagattagagagtggaacgaagttaccaaacgtttgtataagaacaaacgattataatgaaaattaaaatattgatgtcgaaacttgaaatttgaagaagattcctcctgggaaatacaccaaatgaccaaatgatataagttatacacttatacttataaatatgaatgtaatttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="73819" stop="74904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74119" g_stop="74583" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E279240" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74119" e_stop="74583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATTAAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAC</genome_strand>
        <mrna_strand>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATACAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTGGGAAATACACCAAATGACCAAATGATATAAGTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="88315" stop="89199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88614" g_stop="88899" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88614" e_stop="88899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGTTCGTTGTTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTATTTCTTTTGTTCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="88673" stop="89826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88973" g_stop="89526" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88973" e_stop="89526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAACAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGTCACCTCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="89996" stop="88677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89696" g_stop="88977" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89696" e_stop="88977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTTGGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGATCGCCACCACATTTTGGCGTTTCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGTCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGGAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGAGGTGACAATTCCTCATTCTGCACTTGTTCATTCTCCCCATCCTCACCCTCTGT-TACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="89993" stop="88730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89693" g_stop="89030" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89693" e_stop="89030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTTGGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGATCGCCACCACATTTTGGCGTTTCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGTCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGGAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGAGGTGACAATT-CCTCATTCTGCACTTGTTCATTCTCCCCATCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="91328" stop="89966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91028" g_stop="90266" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91028" e_stop="90266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCCCATCCTTCTTCTTCACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTTCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTGAAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATATGAACCAGATTGGAAGTGTAGTCGCCCTCCCACAATAACGGATCTGTCCCAGACTAGGCTAACGCCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTATATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTATTGCTCCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAATATACATATGAAAATGTGGA-GCCGGGATCAAATAATACAGCAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCT-CCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="91328" stop="90067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91028" g_stop="90367" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91028" e_stop="90367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCCCATCCTTCTTCTTCACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTTCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTGAAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATATGAACCAGATTGGAAGTGTAGTCGCCCTCCCACAATAACGGATCTGTCCCAGACTAGGCTAACGCCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTATATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTATTGCTCCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCT-CCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="91843" stop="90568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91543" g_stop="90867" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91543" e_stop="90867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGACCCAATTCTTCACCGTCTCAATCTTAGAAGGATCCAC-ATCACCTCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGACATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCCTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGATTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTA-C-TGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAATCCCATCCTTCTTCTTCACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTTCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="91910" stop="90790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91610" g_stop="91090" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91610" e_stop="91090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTA---AA-CCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTGACCCAATTCTTCACCGTCTCAATCTTAGAAGGATCCA-CATCACCTCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGACATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCCTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGATTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="93391" stop="92614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93091" g_stop="92915" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93091" e_stop="92915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAATTCCTCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAACATATCCTCCAACACTTGGATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279085" ref_strand="-" ref_description="SGN-E279085 [cLEL-4-G4](-)">
      <seq>gcacgagggtaaatgtaacgtgggacattggcgtcttccacttgtcctttgctctgccgtctgcctatcaaaaaaccggtgtttcattctccgtctccacaaagctttcacacatttcagtgaaatggaagggggattgaagccgatggatgcagagcaactgagagagtatggtcacaagatggtagatttcattgctgattactacaaaaacattgaaaatttcccagttctcagtcaagtccagcctggttatctccgtaagcttttgcctgaaaccgcacctgctcattctgagacattgcaagacgttcttgaagaatgttgaaacaaaaatattaccaggggtgacccactggcagagcccagattactttgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="96314" stop="98364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96605" g_stop="96733" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96819" g_stop="96939" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="247" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97680" g_stop="97752" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="320" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97753" i_stop="98001" i_length="249">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98002" g_stop="98064" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="383" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E279085" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279085" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96605" e_stop="96733"/>
          <exon e_start="96819" e_stop="96939"/>
          <exon e_start="97680" e_stop="97752"/>
          <exon e_start="98002" e_stop="98064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATC-AAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAATGTAAGTCCCAATTATCCGCTAACATGAAGACTCGAGTTTGGATGTAATTTTTGTTGTTTTCTTTGTTTCTTTGTTTGGTGATTAGGGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAGGTTTCTCATAAATCCTAAATACTTAATTTTGCTTGCTTTTAACCTAGACATATTTTTGAAGACCTATTCAAAATGAAATGGAAGCTCACTCTTTGTGTATGCTTACTGAAGCCGTGACGGCTAAAATGCCGAAAATAACATAAATGGTGCCATGTCCAAGTCATAATTCATTGCAGAAATACAAAATAACCCCAAATCTGGTGATACAAGTTATGAACTGATAAAGAATAAATACAATTGTTTATCAAAGTTAAGTACATCCTGGTGTGAACAAAAAAAAACAGCAGAGAAAGAATAAAAGAGTCTCCAAGGAAAAACCACTGGTTGCTGGTGGCAGGTATACGGTGGAATAAGTCGAGGTTTGCAAAAGCTGTTATCAAAATAAAAAAATAAATAAAATCTTGAAATCAACTTCCTTGGCATCCTCTTGTGCTGCACGGGTACTTGGATTGGTATCTGCATGCACAGTGCTGAAGTGTAGTGTGAGTCAACATGAACCTAGAAGGTATCATCACGAGCCCCAACTAAATAGTGGTGAAGATTCGTATCGAAAATTCACTTTCATAAACCTGTGTTATATGAAATGAATCGTTAAAACTCAAAACGAGGGTCTACTTGTTTCACATGCATGTCTACTAATCCTAGTTGGTCACTAGATGAAAGACCATTGTTCAGCTTCGTTTAGCTGTTAGTAACTAGACCTCATTTATTGATTGTTTCCACGCCTTGTCTTTGCACAGCCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAGGTGAAATATCTAGTTTTCACTTGTTTTTCCGTTTTTTGTTTGTTTTAATTTATTTATCAACAATTTTCTTCTTTCCTCACCTCCTTGTGCTGTCAAAATGGATAGATTGGTTAAATATTCAATTTCTGGATATTTTCGTTTTGAATATTTGTTTCTTCGACTTCTTGCATCATCTTAACAATGAATGAATAAGACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATAT</genome_strand>
        <mrna_strand>GCACGAG--GGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAAACCGGTGTTTCATTCTCCGTCTCCACAAAGCTTTCA--CACATTTCAGTGAAAT.....................................................................................GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGAGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAAAATTTCCCAGTTCTCAGTCAAGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG.........................................................................................................................................................................................................................................................AATGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702238" ref_strand="+" ref_description="SGN-E702238 [FA18AG01]">
      <seq>ggcagttggtaaatgtaacgtgggacattggcgtcttccacttgtcctttgctctgccgtctgcctatcaaaaactggtatttcattctccgtcaccacaaagctttcactcagagttcagtgaaatggaagggggattgaagccgatggatgcagagcaactgcgagagtatggtcacaagatggtagatttcattgctgattactacaaaaacattgagaatttccccgttctcagtcaagtccagcctggttatctccgtaagcttttgcctgaaaccgcacctgctcattctgagacattgcaagacgttcttgaagacattgatgagcaggatgctaatgcgtgtaatttggatcctgatgcatttgatccagacgttgaaacaaaaatattaccaggggtgacccactggcagagcccagattactttgcatattttccttcaaatagtagtgtggctggatttctgggggaaatgctcagtgccgggattaacatggtgggctttagttggataacttctccagcagcgacagaacttgaaatgatcgttctggattggcttgctaaagtacttaagttgcctgatgaattcctttcaacaggtcaaggaggtggagtgatacagggaacagcaagtgaagctgttctagttgtgattttagctgctagggataaggttctgagaagattcggaaaagatgcaatcagcaaacttgtggtctattgttctgatcnaactcattcttctttacagaaagcatgccagatcggaggcatttatcctgagaactttcgggtgctgaaagcagacccatccagggattatgctctttctcctgatacactttcagaagctgtatcacatgacatggccactggtttaataactttcttcttttgtgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="96308" stop="99434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96607" g_stop="96733" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96819" g_stop="96939" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="248" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97680" g_stop="97752" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="321" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97753" i_stop="97945" i_length="193">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97946" g_stop="98233" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="609" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98234" i_stop="98619" i_length="386">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98620" g_stop="98783" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="773" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98784" i_stop="98993" i_length="210">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98994" g_stop="99134" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="914" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E702238" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96607" e_stop="96733"/>
          <exon e_start="96819" e_stop="96939"/>
          <exon e_start="97680" e_stop="97752"/>
          <exon e_start="97946" e_stop="98233"/>
          <exon e_start="98620" e_stop="98783"/>
          <exon e_start="98994" e_stop="99134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAATGTAAGTCCCAATTATCCGCTAACATGAAGACTCGAGTTTGGATGTAATTTTTGTTGTTTTCTTTGTTTCTTTGTTTGGTGATTAGGGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAGGTTTCTCATAAATCCTAAATACTTAATTTTGCTTGCTTTTAACCTAGACATATTTTTGAAGACCTATTCAAAATGAAATGGAAGCTCACTCTTTGTGTATGCTTACTGAAGCCGTGACGGCTAAAATGCCGAAAATAACATAAATGGTGCCATGTCCAAGTCATAATTCATTGCAGAAATACAAAATAACCCCAAATCTGGTGATACAAGTTATGAACTGATAAAGAATAAATACAATTGTTTATCAAAGTTAAGTACATCCTGGTGTGAACAAAAAAAAACAGCAGAGAAAGAATAAAAGAGTCTCCAAGGAAAAACCACTGGTTGCTGGTGGCAGGTATACGGTGGAATAAGTCGAGGTTTGCAAAAGCTGTTATCAAAATAAAAAAATAAATAAAATCTTGAAATCAACTTCCTTGGCATCCTCTTGTGCTGCACGGGTACTTGGATTGGTATCTGCATGCACAGTGCTGAAGTGTAGTGTGAGTCAACATGAACCTAGAAGGTATCATCACGAGCCCCAACTAAATAGTGGTGAAGATTCGTATCGAAAATTCACTTTCATAAACCTGTGTTATATGAAATGAATCGTTAAAACTCAAAACGAGGGTCTACTTGTTTCACATGCATGTCTACTAATCCTAGTTGGTCACTAGATGAAAGACCATTGTTCAGCTTCGTTTAGCTGTTAGTAACTAGACCTCATTTATTGATTGTTTCCACGCCTTGTCTTTGCACAGCCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAGGTGAAATATCTAGTTTTCACTTGTTTTTCCGTTTTTTGTTTGTTTTAATTTATTTATCAACAATTTTCTTCTTTCCTCACCTCCTTGTGCTGTCAAAATGGATAGATTGGTTAAATATTCAATTTCTGGATATTTTCGTTTTGAATATTTGTTTCTTCGACTTCTTGCATCATCTTAACAATGAATGAATAAGACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAGGTAACATAACGGTTTGACTTTAGCTTCTTTTTCTTCTAAAAAGCTGCATGGCTTTTGCCTTCCAATCCAGCAATCAAAAATGGTTGAATCATAGATTTCTGCGAAAAATTTGTCAGTTCGAATCCTTATTGCGACAAAGTAAAAATTTGAAACTAGAAGCAACTTGTTCTCTTGAAGCTCACTTAGTCTTGAGTTTTGGTTAAAAGTTGTGTACTAAATTTTGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATTGAAGATCACTTAAATATGTCCACTGTATATCCTTTCCAAGAGATATCTTTTCTAAGGTCAACCAGGGGAACTGATTGGCCACAAATTGACTTTCAGGTCAAGGAGGTGGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCATGCCAGGTATATGCCGAAATTGATTGAAGTTGTGTGTTATTGTTGATTTACTTGACAAAAACGGTGACAAAACCAAAGTAGAGGATGTTCATGTTCCGTACACCAATATTTAGCTACATCGAACATATGAATAAGGGGTTTTTCTGCAGAAGAAGTTTCTTTTCTAACCCATGGAATTCGTCTCTGAGATATAGTTCTCTTTCTTTCTTGTGGCAGATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACT</genome_strand>
        <mrna_strand>GGCAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAAT.....................................................................................GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG.................................................................................................................................................................................................ACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAG..................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGAGGTGGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCNAACTCATTCTTCTTTACAGAAAGCATGCCAG..................................................................................................................................................................................................................ATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATAACTTTCTTCTTTTGTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315418" ref_strand="+" ref_description="SGN-E315418 [cTOA-22-E14]">
      <seq>gtaaatgtaacgtgggacattggcgtcttccacttgtcctttgctctgccgtctgcctatcaaaaaaccggtgtttcattctccgtctccacaaagctttcacacatttcagtgaaatggaagggggattgaagccgatggatgcagagcaactgagagagtatggtcacaagatggtagatttcattgctgattactacaaaaacattgaaaatttcccagttctcagtcaagtccagcctggttatctccgtaagcttttgcctgaaaccgcacctgctcattctgagacattgcaagacgttcttgaagatgttgaaacaaaaatattaccaggggtgacccactggcagagcccagattactttgcatattttccttcaaatagtagtgtggctggatttttgggagaaatgctcagtgccgggattaacatggtgggctttagttggataacttctccagcagcgacagaacttgaaatgatcgttctggattggcttgctaaagcacttaagttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="96315" stop="98515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96615" g_stop="96733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96819" g_stop="96939" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="239" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97680" g_stop="97752" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="312" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97753" i_stop="98002" i_length="250">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98003" g_stop="98215" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="525" r_length="213" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E315418" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96615" e_stop="96733"/>
          <exon e_start="96819" e_stop="96939"/>
          <exon e_start="97680" e_stop="97752"/>
          <exon e_start="98003" e_stop="98215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATC-AAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAATGTAAGTCCCAATTATCCGCTAACATGAAGACTCGAGTTTGGATGTAATTTTTGTTGTTTTCTTTGTTTCTTTGTTTGGTGATTAGGGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAGGTTTCTCATAAATCCTAAATACTTAATTTTGCTTGCTTTTAACCTAGACATATTTTTGAAGACCTATTCAAAATGAAATGGAAGCTCACTCTTTGTGTATGCTTACTGAAGCCGTGACGGCTAAAATGCCGAAAATAACATAAATGGTGCCATGTCCAAGTCATAATTCATTGCAGAAATACAAAATAACCCCAAATCTGGTGATACAAGTTATGAACTGATAAAGAATAAATACAATTGTTTATCAAAGTTAAGTACATCCTGGTGTGAACAAAAAAAAACAGCAGAGAAAGAATAAAAGAGTCTCCAAGGAAAAACCACTGGTTGCTGGTGGCAGGTATACGGTGGAATAAGTCGAGGTTTGCAAAAGCTGTTATCAAAATAAAAAAATAAATAAAATCTTGAAATCAACTTCCTTGGCATCCTCTTGTGCTGCACGGGTACTTGGATTGGTATCTGCATGCACAGTGCTGAAGTGTAGTGTGAGTCAACATGAACCTAGAAGGTATCATCACGAGCCCCAACTAAATAGTGGTGAAGATTCGTATCGAAAATTCACTTTCATAAACCTGTGTTATATGAAATGAATCGTTAAAACTCAAAACGAGGGTCTACTTGTTTCACATGCATGTCTACTAATCCTAGTTGGTCACTAGATGAAAGACCATTGTTCAGCTTCGTTTAGCTGTTAGTAACTAGACCTCATTTATTGATTGTTTCCACGCCTTGTCTTTGCACAGCCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAGGTGAAATATCTAGTTTTCACTTGTTTTTCCGTTTTTTGTTTGTTTTAATTTATTTATCAACAATTTTCTTCTTTCCTCACCTCCTTGTGCTGTCAAAATGGATAGATTGGTTAAATATTCAATTTCTGGATATTTTCGTTTTGAATATTTGTTTCTTCGACTTCTTGCATCATCTTAACAATGAATGAATAAGACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTG</genome_strand>
        <mrna_strand>GTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAAACCGGTGTTTCATTCTCCGTCTCCACAAAGCTTTCA--CACATTTCAGTGAAAT.....................................................................................GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGAGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAAAATTTCCCAGTTCTCAGTCAAGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG..........................................................................................................................................................................................................................................................ATGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTTTGGGAGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGCACTTAAGTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205410" ref_strand="+" ref_description="SGN-E205410 [cLEC-28-B17]">
      <seq>aaatgtaacgtgggacattggcgtcttccacttgtcctttgctctgccgtctgcctatcaaaaaaccggtgtttcattctccgtctccacaaagctttcacacatttcagtgaaatggaagggggattgaagccgatggatgcagagcaactgagagagtatggtcacaagatggtagatttcattgctgattactacaaaaacattgaaaatttcccagttctcagtcaagtccagcctggttatctccgtaagcttttgcctgaaaccgcacctgctcattctgagacattgcaagacgttcttgaagatgttgaaacaaaaatattaccaggggtgacccactggcagagcccagattactttgcatattttccttcaaatagtagtgtggctggatttttgggagaaatgctcagtgccgggattaacatggtgggctttagttggataacttctccagcagcgacagaacttgaaatgatcgttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="96317" stop="98486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96617" g_stop="96733" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96819" g_stop="96939" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="237" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97680" g_stop="97752" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="310" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97753" i_stop="98002" i_length="250">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98003" g_stop="98186" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="494" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E205410" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96617" e_stop="96733"/>
          <exon e_start="96819" e_stop="96939"/>
          <exon e_start="97680" e_stop="97752"/>
          <exon e_start="98003" e_stop="98186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATC-AAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAATGTAAGTCCCAATTATCCGCTAACATGAAGACTCGAGTTTGGATGTAATTTTTGTTGTTTTCTTTGTTTCTTTGTTTGGTGATTAGGGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAGGTTTCTCATAAATCCTAAATACTTAATTTTGCTTGCTTTTAACCTAGACATATTTTTGAAGACCTATTCAAAATGAAATGGAAGCTCACTCTTTGTGTATGCTTACTGAAGCCGTGACGGCTAAAATGCCGAAAATAACATAAATGGTGCCATGTCCAAGTCATAATTCATTGCAGAAATACAAAATAACCCCAAATCTGGTGATACAAGTTATGAACTGATAAAGAATAAATACAATTGTTTATCAAAGTTAAGTACATCCTGGTGTGAACAAAAAAAAACAGCAGAGAAAGAATAAAAGAGTCTCCAAGGAAAAACCACTGGTTGCTGGTGGCAGGTATACGGTGGAATAAGTCGAGGTTTGCAAAAGCTGTTATCAAAATAAAAAAATAAATAAAATCTTGAAATCAACTTCCTTGGCATCCTCTTGTGCTGCACGGGTACTTGGATTGGTATCTGCATGCACAGTGCTGAAGTGTAGTGTGAGTCAACATGAACCTAGAAGGTATCATCACGAGCCCCAACTAAATAGTGGTGAAGATTCGTATCGAAAATTCACTTTCATAAACCTGTGTTATATGAAATGAATCGTTAAAACTCAAAACGAGGGTCTACTTGTTTCACATGCATGTCTACTAATCCTAGTTGGTCACTAGATGAAAGACCATTGTTCAGCTTCGTTTAGCTGTTAGTAACTAGACCTCATTTATTGATTGTTTCCACGCCTTGTCTTTGCACAGCCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAGGTGAAATATCTAGTTTTCACTTGTTTTTCCGTTTTTTGTTTGTTTTAATTTATTTATCAACAATTTTCTTCTTTCCTCACCTCCTTGTGCTGTCAAAATGGATAGATTGGTTAAATATTCAATTTCTGGATATTTTCGTTTTGAATATTTGTTTCTTCGACTTCTTGCATCATCTTAACAATGAATGAATAAGACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGA</genome_strand>
        <mrna_strand>AAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAAACCGGTGTTTCATTCTCCGTCTCCACAAAGCTTTCA--CACATTTCAGTGAAAT.....................................................................................GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGAGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAAAATTTCCCAGTTCTCAGTCAAGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG..........................................................................................................................................................................................................................................................ATGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTTTGGGAGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314498" ref_strand="+" ref_description="SGN-E314498 [cTOB-1-E23]">
      <seq>taacgtggtacattggcgtcttccacttgtcctttgctctgccgtctgcctatcaaaaaaccggtgtttcattctccgtctccacaaagctttcacacatttcagtgaaatggaagggggattgaagccgatggatgcagagcaactgagagagtatggtcacaagatggtagatttcattgctgattactacaaaaacattgaaaatttcccagttctcagtcaagtccagcctggttatctccgtaagcttttgcctgaaaccgcacctgctcattctgagacattgcaagacgttcttgaagatgttgaaacaaaaatattaccaggggtgacccactggcagagcccagattactttgcatattttccttcaaatagtagtgtggctggatttttgggagaaatgctcagtgccgggattaacatggtgggctttagttggataacttctccagcagcgacagaacttgaaatgatcgttctggattggcttgctaaagcacttaagttgcctgatgaattcctttcaacaggttgtgtactaatattggtgcaagttaagcaaaaagtcgggagagagaagatagaaccatatgtttataagctgattgaaagatggaagatcacttaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="96322" stop="98840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96622" g_stop="96733" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85">
            <donor d_prob="0.968" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96819" g_stop="96939" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="232" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97680" g_stop="97752" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="305" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97753" i_stop="98002" i_length="250">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98003" g_stop="98233" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="536" r_length="231" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98234" i_stop="98438" i_length="205">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98439" g_stop="98540" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="638" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E314498" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96622" e_stop="96733"/>
          <exon e_start="96819" e_stop="96939"/>
          <exon e_start="97680" e_stop="97752"/>
          <exon e_start="98003" e_stop="98233"/>
          <exon e_start="98439" e_stop="98540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATC-AAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAATGTAAGTCCCAATTATCCGCTAACATGAAGACTCGAGTTTGGATGTAATTTTTGTTGTTTTCTTTGTTTCTTTGTTTGGTGATTAGGGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAGGTTTCTCATAAATCCTAAATACTTAATTTTGCTTGCTTTTAACCTAGACATATTTTTGAAGACCTATTCAAAATGAAATGGAAGCTCACTCTTTGTGTATGCTTACTGAAGCCGTGACGGCTAAAATGCCGAAAATAACATAAATGGTGCCATGTCCAAGTCATAATTCATTGCAGAAATACAAAATAACCCCAAATCTGGTGATACAAGTTATGAACTGATAAAGAATAAATACAATTGTTTATCAAAGTTAAGTACATCCTGGTGTGAACAAAAAAAAACAGCAGAGAAAGAATAAAAGAGTCTCCAAGGAAAAACCACTGGTTGCTGGTGGCAGGTATACGGTGGAATAAGTCGAGGTTTGCAAAAGCTGTTATCAAAATAAAAAAATAAATAAAATCTTGAAATCAACTTCCTTGGCATCCTCTTGTGCTGCACGGGTACTTGGATTGGTATCTGCATGCACAGTGCTGAAGTGTAGTGTGAGTCAACATGAACCTAGAAGGTATCATCACGAGCCCCAACTAAATAGTGGTGAAGATTCGTATCGAAAATTCACTTTCATAAACCTGTGTTATATGAAATGAATCGTTAAAACTCAAAACGAGGGTCTACTTGTTTCACATGCATGTCTACTAATCCTAGTTGGTCACTAGATGAAAGACCATTGTTCAGCTTCGTTTAGCTGTTAGTAACTAGACCTCATTTATTGATTGTTTCCACGCCTTGTCTTTGCACAGCCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAGGTGAAATATCTAGTTTTCACTTGTTTTTCCGTTTTTTGTTTGTTTTAATTTATTTATCAACAATTTTCTTCTTTCCTCACCTCCTTGTGCTGTCAAAATGGATAGATTGGTTAAATATTCAATTTCTGGATATTTTCGTTTTGAATATTTGTTTCTTCGACTTCTTGCATCATCTTAACAATGAATGAATAAGACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAGGTAACATAACGGTTTGACTTTAGCTTCTTTTTCTTCTAAAAAGCTGCATGGCTTTTGCCTTCCAATCCAGCAATCAAAAATGGTTGAATCATAGATTTCTGCGAAAAATTTGTCAGTTCGAATCCTTATTGCGACAAAGTAAAAATTTGAAACTAGAAGCAACTTGTTCTCTTGAAGCTCACTTAGTCTTGAGTTTTGGTTAAAAGTTGTGTACTAAATTTTGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATTGAAGATCACTTAAATAT</genome_strand>
        <mrna_strand>TAACGTGGTACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAAACCGGTGTTTCATTCTCCGTCTCCACAAAGCTTTCA--CACATTTCAGTGAAAT.....................................................................................GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGAGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAAAATTTCCCAGTTCTCAGTCAAGTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG..........................................................................................................................................................................................................................................................ATGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTTTGGGAGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGCACTTAAGTTGCCTGATGAATTCCTTTCAACAG.............................................................................................................................................................................................................GTTGTGTACTAATATTGGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATGGAAGATCACTTAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368222" ref_strand="-" ref_description="SGN-E368222 [TUS-26-G22](-)">
      <seq>ctaggatacagggaacagcaagtgaagctgttctagttgtgattttagctgctagggataaggttctgagaagagtcggaaaagatgcaatcagcaaacttgtggtctattgttctgatcaaactcattcttctttacagaaagcttgccagatcggaggaatttatcctgagaactttcgggtgctgaaagcagacccatccagggattatgctctttctcctgatacactttcagaagctgtatcacatgacatggccactggtttaatacctttcttcttttgtgctactattggtacaacatcttcaactgctgtggatcctttgctcgaactgggaaagattgccaagagtaatagcatatggttccatgtggatgcggcctatgctggaagtgcatgtatctgtccagaataccggggctatatgaatggtgtcgaagaagctgattcgttcaacatgaatgcacataagtggttcctgacaaactttgactgttccgctctctgggtcaaggaccggagtgcacttatccattcactgtcaacaaattctgagttatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="98333" stop="101836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98631" g_stop="98783" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98784" i_stop="98993" i_length="210">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98994" g_stop="99134" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="293" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99135" i_stop="99877" i_length="743">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99878" g_stop="99937" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="353" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99938" i_stop="101064" i_length="1127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.270" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101065" g_stop="101229" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="518" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101230" i_stop="101488" i_length="259">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101489" g_stop="101536" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="567" r_length="49" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E368222" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98631" e_stop="98783"/>
          <exon e_start="98994" e_stop="99134"/>
          <exon e_start="99878" e_stop="99937"/>
          <exon e_start="101065" e_stop="101229"/>
          <exon e_start="101489" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCATGCCAGGTATATGCCGAAATTGATTGAAGTTGTGTGTTATTGTTGATTTACTTGACAAAAACGGTGACAAAACCAAAGTAGAGGATGTTCATGTTCCGTACACCAATATTTAGCTACATCGAACATATGAATAAGGGGTTTTTCTGCAGAAGAAGTTTCTTTTCTAACCCATGGAATTCGTCTCTGAGATATAGTTCTCTTTCTTTCTTGTGGCAGATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACTGTAAGGGAAATAGGAAAAGAAGAAACCATGTTCATCTTGCCAAACCGTATCTTTCAATGTATTAGCAAGAGAACTATTTTTTGGTTTTACTTTTTAGGTCTCTCTCATTTCGGGTAAGATATTGCATAGTCCTTAGGTCTCTCTCATTGACAAGATAAGTTACTGCTAATTCCTGTTCTAGAAAGATTAAGTAGATCATTAATTTAGTATGTCATATTGTGATTACTGTACCTTGTTAGGATACAAGTGTTTGAAGTCAAAATCCAAGTTTGAGACCTTTAAAGGTTGTCCTAACCTTTTAGTATTTTTCTTTTACATTAAATGCATACTTTGTATTCATTTTTTCTTATGAGATATTTATATTGGCTTGTCTAGTTGGCATATAAATGATTTATTGTATTAACAACATCTACTAAGGACCTTCACCATTGTATACAAAAAGTAAAACTTATCTAGGTGTTCCATGCACAAGTATTCTTTTGATTTGTTAATGTATCAGTAAATGTAAGCACTCTGAATCGCTTAAATGTGAGACATCACATGTATAAAATGGGCTCCAGTATATTAGTTTAAAGCTTTAGATGCAAATTGTTGGTAATCAATGTTTGTTGTAAGTTTGGTATATAATGAAATGGATGCCACCTTCCGATGCTTTCTCACATCTCGTTTGCTTACTTTTGACGTGTAATTTCCTTGCTGTGCATTCTAAATTGCTTAAGCAATCTTTTGCAATTCATGCACAGATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAGGTAAAACCTGGTGAGGTGTTTGGACATCATGCAGGGAGTATCTGTTGGGGGATGATTTTTTAAAACTTATAGACTAAGAAAGGAAGTATGGCCATTGCTAAAAATTAAATTTAGTGCTGGGCACTTGGTTTGTTCAGTCAGCTTGGTTTTATTCATTCATAGTTTTCAGTTTTAGATGGCAAACTGAGAAACTCAATTTTTTCATTTGGTTTGTTTTGTTAGTTTTTCAGTGTTGCAATTTTGTCACTTTAGCTTTAAATTTTTTCCTTTGCTACTCTTATTATACTTTTGTGGACCAAAAGAATTTATATATAATTGAATTCTAATAGATCCCTTAGTATACATTTAGTTGTTAATTGCACCATTCTTCATATTTCACATATACATTTCAACTTCGTACTCCCAAATGTATAATTATAACTTTGTTTATCATAACTGTTGTTCTCTGCTTTGAATCAAACAAAAAACTAAAGTTTTAAGGCTGGGAAGTTTCTCTCTCTCCTAAATTTGTCTTCCTGGTTTAGACTGCATATAACTCACCTCTAGTTCAAATATTAACGTAAATTTTTACAGGTCTGAATATTTTGATGCTCCAGAGTGAAGCTAGATTACTGCTTTTAAGTTGTAACTATGAAACAACAATGCCAAGTGTCCAAGAAATTAAATATCGCTACTTTCCCTTTATTGTGATTGATAGACTTCTTTCATGAACCTGTATATATTGCTCACCACTAATTCAAGTATTCACAATCTTCACTTCAAGATCCAACACTTGGGTAAAACCATAAATCATAGACAGCTGGGTTTTAGCCTCACTGATGTCAAGCACAAACCATAAAAGTGATGCCCAAAGCAACATAAAGTAAAACCTGTAACTTTTTGTGGACTAAGATTATGGAAGAATCATCATATAGACTTATACTCCTCTATATCTCACTCCTGTAAGCCATTTAATGAATCTTCCTGTTCTGGAACTCAGTACCTTAAGCATCAATCCTATTTAATCAGATGTCTTGTTATCATTAGCAGTATACCTTGTTATCTTCTTTGATTTTCTTGTTTAATGAGTCCATATATCCACTGTCAAGTCCATATAGAACAAGGCTAAGTCACATGCCTATTTACAGAGTAATAGCATATGGTTTCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAATGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAGGTACAGGGTTATTTTCTGGTGTTATTCTATAAAATAGATAAAATTGCATGCAATCAACTACTACACGAGGACCACAGTGCATGTTATCTTAAGTGATACTGGAACGGCTTCTCTAGATGGCCAGATTTTCTTAGAGTTGCTGCTTTGATAACTCATCTTCTTAGTTCATTTACTGGACGCTTGCTTTACCAGACACAAGAGCTAACATGAATTTATATTGTTTGGAAAACTGGAATTTATGGCATTTGCATCTGAACAGGACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAG-TATCTC</genome_strand>
        <mrna_strand>CTAG-GATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGAGTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCTTGCCAG..................................................................................................................................................................................................................ATCGGAGGAATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAATAGCATATGGTTCCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAGTGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAG...................................................................................................................................................................................................................................................................GACCGGAGTGCACTTATCCATTCACTGTCAACAAATTCTGAGTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214935" ref_strand="+" ref_description="SGN-E214935 [cLEC-78-J21]">
      <seq>ggagtgatacagggaacagcaagtgaagctgttctagttgtgattttagctgctagggataaggttctgagaagagtcggaaaagatgcaatcagcaaacttgtggtctattgttctgatcaaactcattcttctttacagaaagcttgccagatcggaggaatttatcctgagaactttcgggtgctgaaagcagacccatccagggattatgctctttctcctgatacactttcagaagctgtatcacatgacatggccactggtttaatacctttcttcttttgtgctactgtaagggaaatagaaaaagaagacaccatgttcatcttgccaaaccgtatctttcaatgtattagcaagagaactattttttggttttactttttaggtctctctcatttcgggtaagatattgcatagtccctaggtctctctcattgacaagataagttactgctaattcctgttctagaaagattaagtagatcattaatttagtatgtcatattgtgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="98331" stop="99661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98631" g_stop="98783" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98784" i_stop="98993" i_length="210">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98994" g_stop="99361" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="521" r_length="368" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E214935" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98631" e_stop="98783"/>
          <exon e_start="98994" e_stop="99361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCATGCCAGGTATATGCCGAAATTGATTGAAGTTGTGTGTTATTGTTGATTTACTTGACAAAAACGGTGACAAAACCAAAGTAGAGGATGTTCATGTTCCGTACACCAATATTTAGCTACATCGAACATATGAATAAGGGGTTTTTCTGCAGAAGAAGTTTCTTTTCTAACCCATGGAATTCGTCTCTGAGATATAGTTCTCTTTCTTTCTTGTGGCAGATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACTGTAAGGGAAATAGGAAAAGAAGAAACCATGTTCATCTTGCCAAACCGTATCTTTCAATGTATTAGCAAGAGAACTATTTTTTGGTTTTACTTTTTAGGTCTCTCTCATTTCGGGTAAGATATTGCATAGTCCTTAGGTCTCTCTCATTGACAAGATAAGTTACTGCTAATTCCTGTTCTAGAAAGATTAAGTAGATCATTAATTTAGTATGTCATATTGTGATTACT</genome_strand>
        <mrna_strand>GGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGAGTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCTTGCCAG..................................................................................................................................................................................................................ATCGGAGGAATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACTGTAAGGGAAATAGAAAAAGAAGACACCATGTTCATCTTGCCAAACCGTATCTTTCAATGTATTAGCAAGAGAACTATTTTTTGGTTTTACTTTTTAGGTCTCTCTCATTTCGGGTAAGATATTGCATAGTCCCTAGGTCTCTCTCATTGACAAGATAAGTTACTGCTAATTCCTGTTCTAGAAAGATTAAGTAGATCATTAATTTAGTATGTCATATTGTGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365418" ref_strand="+" ref_description="SGN-E365418 [cLPT-2-A20]">
      <seq>tgagaagagtcggaaaagatgcaatcagcaaacttgtggtctattgttctgatcaaactcattcttctttacagaaagcttgccagatcggaggaatttatcctgagaactttcgggtgctgaaagcagacccatccagggattatgctctttctcctgatacactttcagaagctgtatcacatgacatggccactggtttaatacctttcttcttttgtgctactattggtacaacatcttcaactgctgtggatcctttgctcgaactgggaaagattgccaagagtaatagcatatggtttcatgtggatgcggcctatgctggaagtgcatgtatctgtccagaataccggggctatatgaatggtgtcgaagaagctgattcgttcaacatgaatgcacataagtggtttctgacaaactttgactgttccgctctctgggtcaaggaccggagtgcactcatccagtcactgtcaacaaatcctgagtatctcaaaaacaaagcctctcaagaaaacttggttgtggattacaaagattggcaaattcctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="98398" stop="102971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98698" g_stop="98783" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98784" i_stop="98993" i_length="210">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98994" g_stop="99134" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="227" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99135" i_stop="99877" i_length="743">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99878" g_stop="99937" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="287" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99938" i_stop="101064" i_length="1127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.270" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101065" g_stop="101229" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="452" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101230" i_stop="101488" i_length="259">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101489" g_stop="101545" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="509" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101546" i_stop="102619" i_length="1074">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102620" g_stop="102671" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="561" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E365418" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98698" e_stop="98783"/>
          <exon e_start="98994" e_stop="99134"/>
          <exon e_start="99878" e_stop="99937"/>
          <exon e_start="101065" e_stop="101229"/>
          <exon e_start="101489" e_stop="101545"/>
          <exon e_start="102620" e_stop="102671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCATGCCAGGTATATGCCGAAATTGATTGAAGTTGTGTGTTATTGTTGATTTACTTGACAAAAACGGTGACAAAACCAAAGTAGAGGATGTTCATGTTCCGTACACCAATATTTAGCTACATCGAACATATGAATAAGGGGTTTTTCTGCAGAAGAAGTTTCTTTTCTAACCCATGGAATTCGTCTCTGAGATATAGTTCTCTTTCTTTCTTGTGGCAGATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACTGTAAGGGAAATAGGAAAAGAAGAAACCATGTTCATCTTGCCAAACCGTATCTTTCAATGTATTAGCAAGAGAACTATTTTTTGGTTTTACTTTTTAGGTCTCTCTCATTTCGGGTAAGATATTGCATAGTCCTTAGGTCTCTCTCATTGACAAGATAAGTTACTGCTAATTCCTGTTCTAGAAAGATTAAGTAGATCATTAATTTAGTATGTCATATTGTGATTACTGTACCTTGTTAGGATACAAGTGTTTGAAGTCAAAATCCAAGTTTGAGACCTTTAAAGGTTGTCCTAACCTTTTAGTATTTTTCTTTTACATTAAATGCATACTTTGTATTCATTTTTTCTTATGAGATATTTATATTGGCTTGTCTAGTTGGCATATAAATGATTTATTGTATTAACAACATCTACTAAGGACCTTCACCATTGTATACAAAAAGTAAAACTTATCTAGGTGTTCCATGCACAAGTATTCTTTTGATTTGTTAATGTATCAGTAAATGTAAGCACTCTGAATCGCTTAAATGTGAGACATCACATGTATAAAATGGGCTCCAGTATATTAGTTTAAAGCTTTAGATGCAAATTGTTGGTAATCAATGTTTGTTGTAAGTTTGGTATATAATGAAATGGATGCCACCTTCCGATGCTTTCTCACATCTCGTTTGCTTACTTTTGACGTGTAATTTCCTTGCTGTGCATTCTAAATTGCTTAAGCAATCTTTTGCAATTCATGCACAGATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAGGTAAAACCTGGTGAGGTGTTTGGACATCATGCAGGGAGTATCTGTTGGGGGATGATTTTTTAAAACTTATAGACTAAGAAAGGAAGTATGGCCATTGCTAAAAATTAAATTTAGTGCTGGGCACTTGGTTTGTTCAGTCAGCTTGGTTTTATTCATTCATAGTTTTCAGTTTTAGATGGCAAACTGAGAAACTCAATTTTTTCATTTGGTTTGTTTTGTTAGTTTTTCAGTGTTGCAATTTTGTCACTTTAGCTTTAAATTTTTTCCTTTGCTACTCTTATTATACTTTTGTGGACCAAAAGAATTTATATATAATTGAATTCTAATAGATCCCTTAGTATACATTTAGTTGTTAATTGCACCATTCTTCATATTTCACATATACATTTCAACTTCGTACTCCCAAATGTATAATTATAACTTTGTTTATCATAACTGTTGTTCTCTGCTTTGAATCAAACAAAAAACTAAAGTTTTAAGGCTGGGAAGTTTCTCTCTCTCCTAAATTTGTCTTCCTGGTTTAGACTGCATATAACTCACCTCTAGTTCAAATATTAACGTAAATTTTTACAGGTCTGAATATTTTGATGCTCCAGAGTGAAGCTAGATTACTGCTTTTAAGTTGTAACTATGAAACAACAATGCCAAGTGTCCAAGAAATTAAATATCGCTACTTTCCCTTTATTGTGATTGATAGACTTCTTTCATGAACCTGTATATATTGCTCACCACTAATTCAAGTATTCACAATCTTCACTTCAAGATCCAACACTTGGGTAAAACCATAAATCATAGACAGCTGGGTTTTAGCCTCACTGATGTCAAGCACAAACCATAAAAGTGATGCCCAAAGCAACATAAAGTAAAACCTGTAACTTTTTGTGGACTAAGATTATGGAAGAATCATCATATAGACTTATACTCCTCTATATCTCACTCCTGTAAGCCATTTAATGAATCTTCCTGTTCTGGAACTCAGTACCTTAAGCATCAATCCTATTTAATCAGATGTCTTGTTATCATTAGCAGTATACCTTGTTATCTTCTTTGATTTTCTTGTTTAATGAGTCCATATATCCACTGTCAAGTCCATATAGAACAAGGCTAAGTCACATGCCTATTTACAGAGTAATAGCATATGGTTTCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAATGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAGGTACAGGGTTATTTTCTGGTGTTATTCTATAAAATAGATAAAATTGCATGCAATCAACTACTACACGAGGACCACAGTGCATGTTATCTTAAGTGATACTGGAACGGCTTCTCTAGATGGCCAGATTTTCTTAGAGTTGCTGCTTTGATAACTCATCTTCTTAGTTCATTTACTGGACGCTTGCTTTACCAGACACAAGAGCTAACATGAATTTATATTGTTTGGAAAACTGGAATTTATGGCATTTGCATCTGAACAGGACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAGTATCTCAAAAACAAAGTAAGTATCCTTGGTTCAATGCTTGTACTTTGACATTTTCAGTTTTCGGTAGTAGTATAAATACTCTCTCCGCCCATTTTATGTGGCACCCTTTGACTTGGCACGGTGTTTAAGAAAAAAAGGAAGACTTTTGGAACTCGTGTGGTTGAAAATCATTTCATTAAGGTTACAAGGGGTATTTTAAAGTTAAATTGTTTCTAATTATAGTAAGGCGACATTCTCTTTGGGATGGACTAAAAAGGGGTGCCCCATAAAACTGGACGGAGGGACTAATTATCTTATCGTGGAACATAATATTATCTCACACTCTAATACAGATAAACTAGGGCTTATTTCTTGTTTATTTCAAAAAATGAACATAGAAATTGTTTTTTTTCTTGATAACCGAGAAATCCCCGTGGGTCAGTGATGCACGGTTCGAACTCGGTGGATTATGGGTCTGTCCTTTACCCCTATCCACTTAAATACCAGGTTTTTGTCTTCGACAAGGTTCGAATCTGTGACACATGCATAACCACACATCATACGATGCGCTCCTACCACTAGATAAAATCCCGAGGATGACATGACTATTAGATTTATGAAATGTAATCACACATAGGTTACTTTTAGTTTCCCCTACTGATATGATCCATTCTTGTGTAGTTTGGTGGGAGTTGAGTAGCAACTCCCTTTTACCCTTCCTTGCAAAGATTCTTCGAACTCTATCTCCGTTTTCTTTAGATCAGTCTTTTCTATGTATATCATTGTCTTGACTGAAAGGTATTATCTGCATGCTCTGTAACTTAATTTTGTTTTGTGAACTAGTTCTCTTGTGCTTTTGAGGCATTTACTCTATCTGTTCTAAAGCATCTGATAGCCAAACTTCTGATGAAAATGGCTTCTATTGCATGAAATAAATTATTGAATTTCAATATGTAACATCTTCCTTTTGGAGGCATTTTCAAAAGTTCTAAGGTTAACTTTATAGCTTGTTGAATTTTCTATTCGGAACTAACATTGTCGATAGTTTGATCATCCATTTGCTTGAGAATAATTTCGGCTCACCCTATAGTAATACCCTTGATACTCCAGGCCTCTCAAGAAAACTTGGTTGTGGATTATAAAGATTGGCAAATTCCTCTTG</genome_strand>
        <mrna_strand>TGAGAAGAGTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCTTGCCAG..................................................................................................................................................................................................................ATCGGAGGAATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAATAGCATATGGTTTCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAGTGGTTTCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAG...................................................................................................................................................................................................................................................................GACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAGTATCTCAAAAACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTCAAGAAAACTTGGTTGTGGATTACAAAGATTGGCAAATTCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253418" ref_strand="+" ref_description="SGN-E253418 [cLEG-24-D1]">
      <seq>gctccagtatattagtttaaagctttagatgcaaattgttggtaatcagtgtttgttgtaagtttggtatataatgaaatggatgccaccttccgattttttctcacatctcttttgcttacttttgacgtgtaatttccttgctgtgcattctaaattgcttaagcaatcttttgcaattcatgcacagattggtacaacatcttcaactgctgtggatcctttgctcgaactgggaaagattgccaagagtaatagcatatggttccatgtggatgcggcctatgctggaagtgcatgtatctgtccagaataccggggctatatgaatggtgtcgaagaagctgattcgttcaacatgaatgcacataagtggttcctgacaaactttgactgttccgctctctgggtcaagacacaagagctgacctgaatttatattgtttggaaaactggaatttatggcatttgcatctgaacaggaccggagtgcactcatccagtcactgtcaacaaatcctgagtatctcaaaaacaaagcctctcaagaaaacttggttgtggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="99388" stop="102948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99688" g_stop="99937" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99938" i_stop="101064" i_length="1127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.270" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101065" g_stop="101229" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="415" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101230" i_stop="101421" i_length="192">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101422" g_stop="101545" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="539" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101546" i_stop="102619" i_length="1074">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102620" g_stop="102649" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="569" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E253418" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99688" e_stop="99937"/>
          <exon e_start="101065" e_stop="101229"/>
          <exon e_start="101422" e_stop="101545"/>
          <exon e_start="102620" e_stop="102649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCAGTATATTAGTTTAAAGCTTTAGATGCAAATTGTTGGTAATCAATGTTTGTTGTAAGTTTGGTATATAATGAAATGGATGCCACCTTCCGATGCTTTCTCACATCTCGTTTGCTTACTTTTGACGTGTAATTTCCTTGCTGTGCATTCTAAATTGCTTAAGCAATCTTTTGCAATTCATGCACAGATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAGGTAAAACCTGGTGAGGTGTTTGGACATCATGCAGGGAGTATCTGTTGGGGGATGATTTTTTAAAACTTATAGACTAAGAAAGGAAGTATGGCCATTGCTAAAAATTAAATTTAGTGCTGGGCACTTGGTTTGTTCAGTCAGCTTGGTTTTATTCATTCATAGTTTTCAGTTTTAGATGGCAAACTGAGAAACTCAATTTTTTCATTTGGTTTGTTTTGTTAGTTTTTCAGTGTTGCAATTTTGTCACTTTAGCTTTAAATTTTTTCCTTTGCTACTCTTATTATACTTTTGTGGACCAAAAGAATTTATATATAATTGAATTCTAATAGATCCCTTAGTATACATTTAGTTGTTAATTGCACCATTCTTCATATTTCACATATACATTTCAACTTCGTACTCCCAAATGTATAATTATAACTTTGTTTATCATAACTGTTGTTCTCTGCTTTGAATCAAACAAAAAACTAAAGTTTTAAGGCTGGGAAGTTTCTCTCTCTCCTAAATTTGTCTTCCTGGTTTAGACTGCATATAACTCACCTCTAGTTCAAATATTAACGTAAATTTTTACAGGTCTGAATATTTTGATGCTCCAGAGTGAAGCTAGATTACTGCTTTTAAGTTGTAACTATGAAACAACAATGCCAAGTGTCCAAGAAATTAAATATCGCTACTTTCCCTTTATTGTGATTGATAGACTTCTTTCATGAACCTGTATATATTGCTCACCACTAATTCAAGTATTCACAATCTTCACTTCAAGATCCAACACTTGGGTAAAACCATAAATCATAGACAGCTGGGTTTTAGCCTCACTGATGTCAAGCACAAACCATAAAAGTGATGCCCAAAGCAACATAAAGTAAAACCTGTAACTTTTTGTGGACTAAGATTATGGAAGAATCATCATATAGACTTATACTCCTCTATATCTCACTCCTGTAAGCCATTTAATGAATCTTCCTGTTCTGGAACTCAGTACCTTAAGCATCAATCCTATTTAATCAGATGTCTTGTTATCATTAGCAGTATACCTTGTTATCTTCTTTGATTTTCTTGTTTAATGAGTCCATATATCCACTGTCAAGTCCATATAGAACAAGGCTAAGTCACATGCCTATTTACAGAGTAATAGCATATGGTTTCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAATGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAGGTACAGGGTTATTTTCTGGTGTTATTCTATAAAATAGATAAAATTGCATGCAATCAACTACTACACGAGGACCACAGTGCATGTTATCTTAAGTGATACTGGAACGGCTTCTCTAGATGGCCAGATTTTCTTAGAGTTGCTGCTTTGATAACTCATCTTCTTAGTTCATTTACTGGACGCTTGCTTTACCAGACACAAGAGCTAACATGAATTTATATTGTTTGGAAAACTGGAATTTATGGCATTTGCATCTGAACAGGACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAGTATCTCAAAAACAAAGTAAGTATCCTTGGTTCAATGCTTGTACTTTGACATTTTCAGTTTTCGGTAGTAGTATAAATACTCTCTCCGCCCATTTTATGTGGCACCCTTTGACTTGGCACGGTGTTTAAGAAAAAAAGGAAGACTTTTGGAACTCGTGTGGTTGAAAATCATTTCATTAAGGTTACAAGGGGTATTTTAAAGTTAAATTGTTTCTAATTATAGTAAGGCGACATTCTCTTTGGGATGGACTAAAAAGGGGTGCCCCATAAAACTGGACGGAGGGACTAATTATCTTATCGTGGAACATAATATTATCTCACACTCTAATACAGATAAACTAGGGCTTATTTCTTGTTTATTTCAAAAAATGAACATAGAAATTGTTTTTTTTCTTGATAACCGAGAAATCCCCGTGGGTCAGTGATGCACGGTTCGAACTCGGTGGATTATGGGTCTGTCCTTTACCCCTATCCACTTAAATACCAGGTTTTTGTCTTCGACAAGGTTCGAATCTGTGACACATGCATAACCACACATCATACGATGCGCTCCTACCACTAGATAAAATCCCGAGGATGACATGACTATTAGATTTATGAAATGTAATCACACATAGGTTACTTTTAGTTTCCCCTACTGATATGATCCATTCTTGTGTAGTTTGGTGGGAGTTGAGTAGCAACTCCCTTTTACCCTTCCTTGCAAAGATTCTTCGAACTCTATCTCCGTTTTCTTTAGATCAGTCTTTTCTATGTATATCATTGTCTTGACTGAAAGGTATTATCTGCATGCTCTGTAACTTAATTTTGTTTTGTGAACTAGTTCTCTTGTGCTTTTGAGGCATTTACTCTATCTGTTCTAAAGCATCTGATAGCCAAACTTCTGATGAAAATGGCTTCTATTGCATGAAATAAATTATTGAATTTCAATATGTAACATCTTCCTTTTGGAGGCATTTTCAAAAGTTCTAAGGTTAACTTTATAGCTTGTTGAATTTTCTATTCGGAACTAACATTGTCGATAGTTTGATCATCCATTTGCTTGAGAATAATTTCGGCTCACCCTATAGTAATACCCTTGATACTCCAGGCCTCTCAAGAAAACTTGGTTGTGGATTAT</genome_strand>
        <mrna_strand>GCTCCAGTATATTAGTTTAAAGCTTTAGATGCAAATTGTTGGTAATCAGTGTTTGTTGTAAGTTTGGTATATAATGAAATGGATGCCACCTTCCGATTTTTTCTCACATCTCTTTTGCTTACTTTTGACGTGTAATTTCCTTGCTGTGCATTCTAAATTGCTTAAGCAATCTTTTGCAATTCATGCACAGATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAATAGCATATGGTTCCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAGTGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAG................................................................................................................................................................................................ACACAAGAGCTGACCTGAATTTATATTGTTTGGAAAACTGGAATTTATGGCATTTGCATCTGAACAGGACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAGTATCTCAAAAACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTCAAGAAAACTTGGTTGTGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243668" ref_strand="+" ref_description="SGN-E243668 [cLED-34-F18]">
      <seq>aaatcctgagtatctcaaaaacaaagcctctcaagaaaacttggttgtggattacaaagattggcaaattcctcttggacgcaggttcagatcactgaagctgtggatggtattgagactctatgggctggaaaagcttcaagcttacataagaaaccatatagaactagcaaagctatttgaggaacttgttgctcaagacaagaggtttgagattgtcacccctcggaagttctcattggtttgttttcgcctacttccacccccgagtaatgaagattatgccaacaaactgaaccatgacctgctagattctgtcaactcaactgggaaactgtttatttctcacacgcttctttcagatagatacatactacgctttgcagtaggagctccactgacagaagagaggcacatcgttggagcttggaaagttttacaagatgaggctgctacattgttaagtaaatgttaatattaatccattatttcacttcattattaattgaccacattattgaaatgcaatttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="101221" stop="104234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101521" g_stop="101545" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101546" i_stop="102619" i_length="1074">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102620" g_stop="102684" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="90" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102685" i_stop="103196" i_length="512">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103197" g_stop="103320" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="214" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103321" i_stop="103499" i_length="179">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103500" g_stop="103637" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="352" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103638" i_stop="103750" i_length="113">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103751" g_stop="103934" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="536" r_length="184" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E243668" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101521" e_stop="101545"/>
          <exon e_start="102620" e_stop="102684"/>
          <exon e_start="103197" e_stop="103320"/>
          <exon e_start="103500" e_stop="103637"/>
          <exon e_start="103751" e_stop="103934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCTGAGTATCTCAAAAACAAAGTAAGTATCCTTGGTTCAATGCTTGTACTTTGACATTTTCAGTTTTCGGTAGTAGTATAAATACTCTCTCCGCCCATTTTATGTGGCACCCTTTGACTTGGCACGGTGTTTAAGAAAAAAAGGAAGACTTTTGGAACTCGTGTGGTTGAAAATCATTTCATTAAGGTTACAAGGGGTATTTTAAAGTTAAATTGTTTCTAATTATAGTAAGGCGACATTCTCTTTGGGATGGACTAAAAAGGGGTGCCCCATAAAACTGGACGGAGGGACTAATTATCTTATCGTGGAACATAATATTATCTCACACTCTAATACAGATAAACTAGGGCTTATTTCTTGTTTATTTCAAAAAATGAACATAGAAATTGTTTTTTTTCTTGATAACCGAGAAATCCCCGTGGGTCAGTGATGCACGGTTCGAACTCGGTGGATTATGGGTCTGTCCTTTACCCCTATCCACTTAAATACCAGGTTTTTGTCTTCGACAAGGTTCGAATCTGTGACACATGCATAACCACACATCATACGATGCGCTCCTACCACTAGATAAAATCCCGAGGATGACATGACTATTAGATTTATGAAATGTAATCACACATAGGTTACTTTTAGTTTCCCCTACTGATATGATCCATTCTTGTGTAGTTTGGTGGGAGTTGAGTAGCAACTCCCTTTTACCCTTCCTTGCAAAGATTCTTCGAACTCTATCTCCGTTTTCTTTAGATCAGTCTTTTCTATGTATATCATTGTCTTGACTGAAAGGTATTATCTGCATGCTCTGTAACTTAATTTTGTTTTGTGAACTAGTTCTCTTGTGCTTTTGAGGCATTTACTCTATCTGTTCTAAAGCATCTGATAGCCAAACTTCTGATGAAAATGGCTTCTATTGCATGAAATAAATTATTGAATTTCAATATGTAACATCTTCCTTTTGGAGGCATTTTCAAAAGTTCTAAGGTTAACTTTATAGCTTGTTGAATTTTCTATTCGGAACTAACATTGTCGATAGTTTGATCATCCATTTGCTTGAGAATAATTTCGGCTCACCCTATAGTAATACCCTTGATACTCCAGGCCTCTCAAGAAAACTTGGTTGTGGATTATAAAGATTGGCAAATTCCTCTTGGACGCAGGTTCAGGTATGCCATTAATGTCATATAAAGTTAGCTAGCTGCATGTTGAATTGTGGGCCGTCCCAGATAAAAATTTGAATTTGTACAGAGGAGACACATTTATTTAATTACTTTAGGTTGGAAACAGTGCTACACACTGTTCAAGTGATAAATATCTTAAAGCAAAATGACAATATATACAACACTGGATAGTGAAAAAGAGCATCTATGATCTAGTGAGCTCTTAAATGTTACTGCTCCAGGTTTGAATGAATTACTCCTACTCAGCTACTATGACGACACATGAAAGCTAGCCTGTCATGCAGGTTTATGAAATATCTTGGTCTTAAAAATAACATGTTACAGCTTAATGATTCACAAGCTAAACTTCTTCAAGATTTAAAATATCTTCGTAAACTCAACATCATTTCAATATTTTTTGGTAGCATTCTCAAAGAACTCTGTTTTAGAAAGTTCGGATGAAGTTATTGCATCATTCAGGTGCAGTTTCCTTGTATCTAACTTGGTTTATTAACTAGATCACTGAAGCTGTGGATGGTATTGAGACTCTATGGGCTGGAAAAGCTTCAAGCTTACATAAGAAACCATATAGAACTAGCAAAGCTATTTGAGGAACTTGTTGCTCAAGACAAGAGGTTTGAGGTAAAAACTTCATATCAAAGTAACCTATGTGGAATGCTTGACCAAGCCAAGTAGGATCCTTACAGACATTGGCCGAAATCTACCTTTTAGAAAGGCTCAAATCCCCTTGTTTCTATGAAAAGCTCCCAATATCTCTTCTAATTAACAAATCTGTCCTCTGAGAAGTTTATTAACTGCAGATTGTCACCCCTCGGAAGTTCTCATTGGTTTGTTTTCGCCTACTTCCACCCCCGAGTAATGAAGATTATGCCAACAAACTGAACCATGACCTGCTAGATTCTGTCAACTCAACTGGAAAACTGTTTATTTCTCACACGGTATATTTGAATTAAGCGAATTTCCCAAGGAACTTGTCTTTTACTCAGAATTAGGGATTAAGTCGATTGCTTCAGTAATTTAACAAACAGCTTACTTTCAACGAATTTTGCAGCTTCTTTCAGATAGATACATACTACGCTTTGCAATAGGGGCTCCACTGACAGAAGCGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACGTCATTATTAATTTACCACATTATTGAAATGCAATTTATTTT</genome_strand>
        <mrna_strand>AAATCCTGAGTATCTCAAAAACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTCAAGAAAACTTGGTTGTGGATTACAAAGATTGGCAAATTCCTCTTGGACGCAGGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTGAAGCTGTGGATGGTATTGAGACTCTATGGGCTGGAAAAGCTTCAAGCTTACATAAGAAACCATATAGAACTAGCAAAGCTATTTGAGGAACTTGTTGCTCAAGACAAGAGGTTTGAG...................................................................................................................................................................................ATTGTCACCCCTCGGAAGTTCTCATTGGTTTGTTTTCGCCTACTTCCACCCCCGAGTAATGAAGATTATGCCAACAAACTGAACCATGACCTGCTAGATTCTGTCAACTCAACTGGGAAACTGTTTATTTCTCACACG.................................................................................................................CTTCTTTCAGATAGATACATACTACGCTTTGCAGTAGGAGCTCCACTGACAGAAGAGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACTTCATTATTAATTGACCACATTATTGAAATGCAATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259038" ref_strand="-" ref_description="SGN-E259038 [cLEG-41-M3]">
      <seq>attgtcacccctcggaagttctcattggtttgttttcgcctacttccacccccgagtaatgaagattatgccagcaaattgaaccatgacctgctagattctgtcaactcaactgggaaactgtttatttctcacacgcttctttcagatagatacatactacgctttgcagtaggagctccactgacagaagagaggcacatcgttggagcttggaaagtttcacaagatgaggctgctacattgttaagtaaatgttaatattaatccattatttcacttcattattaattgaccacattattgaaatgcaatttattttgtcttgttctcaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="103200" stop="104247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103500" g_stop="103637" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103638" i_stop="103750" i_length="113">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103751" g_stop="103946" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="333" r_length="195" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="352"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E259038" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103500" e_stop="103637"/>
          <exon e_start="103751" e_stop="103946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCACCCCTCGGAAGTTCTCATTGGTTTGTTTTCGCCTACTTCCACCCCCGAGTAATGAAGATTATGCCAACAAACTGAACCATGACCTGCTAGATTCTGTCAACTCAACTGGAAAACTGTTTATTTCTCACACGGTATATTTGAATTAAGCGAATTTCCCAAGGAACTTGTCTTTTACTCAGAATTAGGGATTAAGTCGATTGCTTCAGTAATTTAACAAACAGCTTACTTTCAACGAATTTTGCAGCTTCTTTCAGATAGATACATACTACGCTTTGCAATAGGGGCTCCACTGACAGAAGCGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACGTCATTATTAATTTACCACATTATTGAAATGCAATTTATTTTTGTCTTGTTCTC</genome_strand>
        <mrna_strand>ATTGTCACCCCTCGGAAGTTCTCATTGGTTTGTTTTCGCCTACTTCCACCCCCGAGTAATGAAGATTATGCCAGCAAATTGAACCATGACCTGCTAGATTCTGTCAACTCAACTGGGAAACTGTTTATTTCTCACACG.................................................................................................................CTTCTTTCAGATAGATACATACTACGCTTTGCAGTAGGAGCTCCACTGACAGAAGAGAGGCACATCGTTGGAGCTTGGAAAGTTTCACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACTTCATTATTAATTGACCACATTATTGAAATGCAATTTA-TTTTGTCTTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368223" ref_strand="-" ref_description="SGN-E368223 [TUS-26-G22]">
      <seq>accatgacatgctagattctgtcaactcaactggcaaactgtttatttctcacacgcttctttcaaatagatacatactacgctttgcagtaggagctccactgacagaagagaggcacatcgttggagcttggaaagttttacaagatgaggctgctacattgttaagtaaatgttaatattaatccattatttcacttcattattaattgaccacattattgaaatgcaatttattttgtcttgttctcaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="103282" stop="104247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103582" g_stop="103637" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103638" i_stop="103750" i_length="113">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103751" g_stop="103946" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="251" r_length="195" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="270"/>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E368223" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368223" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103582" e_stop="103637"/>
          <exon e_start="103751" e_stop="103946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGACCTGCTAGATTCTGTCAACTCAACTGGAAAACTGTTTATTTCTCACACGGTATATTTGAATTAAGCGAATTTCCCAAGGAACTTGTCTTTTACTCAGAATTAGGGATTAAGTCGATTGCTTCAGTAATTTAACAAACAGCTTACTTTCAACGAATTTTGCAGCTTCTTTCAGATAGATACATACTACGCTTTGCAATAGGGGCTCCACTGACAGAAGCGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACGTCATTATTAATTTACCACATTATTGAAATGCAATTTATTTTTGTCTTGTTCTC</genome_strand>
        <mrna_strand>ACCATGACATGCTAGATTCTGTCAACTCAACTGGCAAACTGTTTATTTCTCACACG.................................................................................................................CTTCTTTCAAATAGATACATACTACGCTTTGCAGTAGGAGCTCCACTGACAGAAGAGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACTTCATTATTAATTGACCACATTATTGAAATGCAATTTA-TTTTGTCTTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106334" stop="105011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106034" g_stop="106011" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106010" i_stop="105765" i_length="246">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105764" g_stop="105311" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="481" r_length="457" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106034" e_stop="106011"/>
          <exon e_start="105764" e_stop="105311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCAACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCATGTTCCGACACACAGTAGTAAGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGG......................................................................................................................................................................................................................................................GGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106335" stop="105254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106035" g_stop="106011" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106010" i_stop="105765" i_length="246">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105764" g_stop="105552" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="239" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106035" e_stop="106011"/>
          <exon e_start="105764" e_stop="105552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCAACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCATGTTCCGACACACAGTAGTAAGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGG......................................................................................................................................................................................................................................................GGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106138" stop="114454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106437" g_stop="106797" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106798" i_stop="106848" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106849" g_stop="107042" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="556" r_length="194" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106437" e_stop="106797"/>
          <exon e_start="106849" e_stop="107042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCATCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTTTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGTCATTCCGTCACGCCTGTGATGGTCCGTCCTGTCATTCCGTCACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTTACCATGACGGTCCGTCGTGGGGTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATATGTTGCTCAAAACGACTAAACAGGTCGTTACA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACG...................................................GTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106138" stop="114297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106437" g_stop="106797" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106798" i_stop="106848" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106849" g_stop="106940" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="454" r_length="92" r_score="0.793"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106437" e_stop="106797"/>
          <exon e_start="106849" e_stop="106940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCATCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTTTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGTCATTCCGTCACGCCTGTGATGGTCCGTCCTGTCATTCCGTCACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCTGCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACG...................................................GTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106138" stop="125239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106438" g_stop="106797" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106798" i_stop="106848" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106849" g_stop="107045" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="558" r_length="197" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106438" e_stop="106797"/>
          <exon e_start="106849" e_stop="107045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCATCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTTTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGTCATTCCGTCACGCCTGTGATGGTCCGTCCTGTCATTCCGTCACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTTACCATGACGGTCCGTCGTGGGGTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATATGTTGCTCAAAACGACTAAACAGGTCGTTACAATA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACG...................................................GTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106138" stop="118924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106438" g_stop="106797" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106798" i_stop="106848" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106849" g_stop="107032" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="545" r_length="184" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106438" e_stop="106797"/>
          <exon e_start="106849" e_stop="107032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCATCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTTTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGTCATTCCGTCACGCCTGTGATGGTCCGTCCTGTCATTCCGTCACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTTACCATGACGGTCCGTCGTGGGGTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATATGTTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACG...................................................GTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="106138" stop="114350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106438" g_stop="106797" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106798" i_stop="106848" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106849" g_stop="106959" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="472" r_length="111" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106438" e_stop="106797"/>
          <exon e_start="106849" e_stop="106959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCCTCTTTCTC-TT-TGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCATCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTTTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGTCATTCCGTCACGCCTGTGATGGTCCGTCCTGTCATTCCGTCACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTTACCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACG...................................................GTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="107401" stop="108178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107701" g_stop="107877" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107701" e_stop="107877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="108882" stop="110194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109182" g_stop="109894" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109182" e_stop="109894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="108882" stop="110077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109182" g_stop="109777" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109182" e_stop="109777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="108882" stop="110007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109182" g_stop="109707" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109182" e_stop="109707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="108953" stop="110231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109253" g_stop="109932" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109253" e_stop="109932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="109402" stop="110660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109702" g_stop="110360" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109702" e_stop="110360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="111458" stop="109454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111158" g_stop="110986" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110985" i_stop="110282" i_length="704">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110281" g_stop="109754" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111158" e_stop="110986"/>
          <exon e_start="110281" e_stop="109754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGATCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAATCCACAAGATCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGACATCGACATAAAAAGAGGTTTCGAAAAGGAGGTGAGTTTAATGGTTCTTACTCTACAGGACAGGGTTCCGGAGGTTACTAAGTTCGACCCATTCAGTCTTCACTACATACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTAAGAGACCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGGTGGTCACCAAAATGGCCGGGGTGATGGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGTACAAACAAACGAAAGGGCCCATTGTTATGCTTTCTCTGGGAGATCGGAGGCGGAGACATCTGATGTTGTCATCACAGGTAATCTTCTGGTTTGTGATCGCATGGCTTTTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTTATTTGCTAATGGTCTAAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATTTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGATGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTTATCTTGAACCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="109471" stop="110832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109771" g_stop="110532" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109771" e_stop="110532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAAAAGCCATGCGATCACAAACCAGAAGATTACCTGTGATGACAACATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="109471" stop="110731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109771" g_stop="110431" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109771" e_stop="110431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="109874" stop="110800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110174" g_stop="110504" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110174" e_stop="110504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAAAAGCCATGCGATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="112086" stop="110933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111786" g_stop="111233" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111786" e_stop="111233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTATGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCATCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATCGGACATAGGCACGTTTCCACGTCTGCCTACTGGGGCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAACGTGGTGGCGGTCACATGCTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="111121" stop="112154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111421" g_stop="111853" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111421" e_stop="111853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGCCCCAGTAGGCAGACGTGGAAACGTGCCTATGTCCGATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGATGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCATAGCATCAGATGGGCTAGGTGCTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGTTTTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="112445" stop="111560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112145" g_stop="111860" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112145" e_stop="111860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="117106" stop="111560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116806" g_stop="116557" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116556" i_stop="112319" i_length="4238">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112318" g_stop="111900" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="664" r_length="413" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116806" e_stop="116557"/>
          <exon e_start="112318" e_stop="111900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTATGTATTTTTAGCTTCTTAGA-AACTCTTAGATTCAGTAATTTGA-AGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATAGTACATTGAAATGTTAAGGTTTAGATTTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTGACAATCGCGACCCGATTTGGATCGTGACATATATCAATAAAAATATAAAAAAATTCAAAATGCTCGAAGCATATATTTTTAAAACTCAAGACTTATATTTTTTACTGAGAGTTAACTTATCCAAATTTTAAAATTTATGCCTTATAAATTTAAGTTTTCATTTTACATCTCGAAGCATTTTTAATACGTTCTAACTCGCTTCATAAATATTTTTGGAAACACCAATTGAAATGGATAAAGTCATTGTGAAATAAGATGAGTCATAATACACCTTTTTTTGTTAGAAATGGAGACAACTGTCCCTACCCCACAAAACCTATTTTGTCAGTAATGGGCTTAACTGGGCCCATATGGGCCAAAACCTATATATAACCCACGTGATTAGTACCAAAAAACTGATCTCACTATCGAGTATATATTGTATTGGTATCATTAATACTGAATAAATTTGCTTAATTATACTAAATCAGTATATATCATTAAAGTTTTTGTTCAAAATTAATGATACTAAATGAGCATATATTTAAATTTTATGCGGTATTTACTTAGTTTTCCCTATAAAATTAGTGTTAAAATGTTGTATTGGTAAAGTTTTTAATTATGTTAGAAAAATTATTTCTTATGCATAGTTTGATTAGTATATTAAAAATAACATGCTTAAATTAAAAAAGTATTTACAAAAATACTCTCCATATATATCATGGAAAAGACGTGGAAAACTTTTTGAGGGGAAATCGTATCTTTAGTCATATATTAATGCAAGCATTATGATTCTATGCATTAGGGATACCGTGAATTTTCATATATTAGTTAGTTATGTATACCTTAATATCAGAGTGGATACATTAGTTATATATAGCTAAAAAAGTGTATCAATTATGGTACTAGTGTTAGTAATATACATAAAGCTAATACATGTATTTTTATTTTTTTTAATACGTTCTATAAAACAATCCCTAAAGTTACAAATATTTGATTATTGAATTATCATTTAAATCATATTTACAATGTGTAAATTATATATAATTTTCACTTTTGGAATAATTTTAAATATACAATCTTTGATGTTTTATGAGATTGAAGTTCAAAAAACTTAAAAGACTTTTTAATAATTTTTGCTTGCACTTTGTTAGCTACATATAACTTTTATTTTAACTTCAATCATAAAAAATTTATTTCAATTATTTTTACATGAAATTTATGCTATATATCATAGCTATTTTTATTGGATTTTAAACCAAACTAACTAAATTTTAGTCATATAAAAATTTAAAACATCATAGATTTAAATTAATTTCTAAGTGTTTATTAATTTCTAAGTGAAACACGTGAAATAGTTTTTGAAAATCCAAATAAAGTGCCCCACCATGACTTTTTAGTTATAGAGTGTACATTGTACAATCTAAAACATGACAAAATAGATATGAATGCAAGTTTTGTTTCAATAGCAAGCCAAAATTGATGATGTAGGGTATCTTGGTAGGAGCGAAAATATTTGTTAAAAGGAAAATAAACATTTTTTAAATAATTCATAACGAAGCAAAAAACAATTTCAATACTCAAGCTATTATATGACCAAAGGTAATGAATGTTTCCAGTATTTGTGGCCCAAAGGATCAATTTCATGATAGAAAATATTAGTTTTTGACCAAAAATATTTTTTAATTATATCCAAAATAAAAGTTACATATTTAAAGTATTATTTGTAGTAGAAAATATTCTTTAATAATAATCTAAATTTAAATTACATTTTTAAAGTATCATTTTTAGTAGAAACCATCCTTTAAGATTTATAAATAAATAACTTTCATCCTTTTGTTAGATTTTGTCAAAAAAAACTAATGGATTTTATGAAACATGAACTATTAACGTGATTATCAAAAAAACTTATTCTGCATAATTTCATTACTTGCTACAAGAAGTTCTTGGAGCATATAAAATATTTTAGACATTGTTGCTTATGAAAACTAAAGATGATTGGAAGATATGCGCATACATAATTTGCCTTTTTCGTAACCGAATGAAGTTAGAGATTAATTATTTTTATTTTTTTCTTAACTAAATAATTCAATAGATTTTTACGTCAATCTAATATTGAAGTGACCAAAATATAGATTGTCTCGTATTTGAGTTTCATTCTACATTATTAGAAGCGGAAGTCTCCAGGAAATGTCGCTTTTAGCATATTCAATTGAGAAGAAACATATTTAAACTAATAAATTTTTTAATTAAAATTGCATAAAAATGAATTTAAAAAGACGGACAAATTAAAAGTTTTGCATAATTCTTAACTCAATTACGAAAATGTAACGACCAGTTTAGTAGTTTTGAGCAACAGATTTTATTTCTGGAAAAACAGACTGAGACGACGGATCCCACGACGGACCGTCATGGTAACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGACGTGACGGACCGTCACAGGCGTGACTGACCGTCACAGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGAACAGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACATTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAAGGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTCATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAAGAGAAAGAGGGAGAATTGAACGAGAAGAGGAAAACACAAGGCTTTGGGAAATTCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGAATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTAATTGAATTGGTTTTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCA</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGACTACTCTTAG-TTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAAC-CCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTC--T-T-TC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="117187" stop="111618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116887" g_stop="116561" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116560" i_stop="112320" i_length="4241">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112319" g_stop="111918" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="729" r_length="399" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116887" e_stop="116561"/>
          <exon e_start="112319" e_stop="111918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGAT-ATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGATTCAGTAATTTGAAGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATAGTACATTGAAATGTTAAGGTTTAGATTTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTGACAATCGCGACCCGATTTGGATCGTGACATATATCAATAAAAATATAAAAAAATTCAAAATGCTCGAAGCATATATTTTTAAAACTCAAGACTTATATTTTTTACTGAGAGTTAACTTATCCAAATTTTAAAATTTATGCCTTATAAATTTAAGTTTTCATTTTACATCTCGAAGCATTTTTAATACGTTCTAACTCGCTTCATAAATATTTTTGGAAACACCAATTGAAATGGATAAAGTCATTGTGAAATAAGATGAGTCATAATACACCTTTTTTTGTTAGAAATGGAGACAACTGTCCCTACCCCACAAAACCTATTTTGTCAGTAATGGGCTTAACTGGGCCCATATGGGCCAAAACCTATATATAACCCACGTGATTAGTACCAAAAAACTGATCTCACTATCGAGTATATATTGTATTGGTATCATTAATACTGAATAAATTTGCTTAATTATACTAAATCAGTATATATCATTAAAGTTTTTGTTCAAAATTAATGATACTAAATGAGCATATATTTAAATTTTATGCGGTATTTACTTAGTTTTCCCTATAAAATTAGTGTTAAAATGTTGTATTGGTAAAGTTTTTAATTATGTTAGAAAAATTATTTCTTATGCATAGTTTGATTAGTATATTAAAAATAACATGCTTAAATTAAAAAAGTATTTACAAAAATACTCTCCATATATATCATGGAAAAGACGTGGAAAACTTTTTGAGGGGAAATCGTATCTTTAGTCATATATTAATGCAAGCATTATGATTCTATGCATTAGGGATACCGTGAATTTTCATATATTAGTTAGTTATGTATACCTTAATATCAGAGTGGATACATTAGTTATATATAGCTAAAAAAGTGTATCAATTATGGTACTAGTGTTAGTAATATACATAAAGCTAATACATGTATTTTTATTTTTTTTAATACGTTCTATAAAACAATCCCTAAAGTTACAAATATTTGATTATTGAATTATCATTTAAATCATATTTACAATGTGTAAATTATATATAATTTTCACTTTTGGAATAATTTTAAATATACAATCTTTGATGTTTTATGAGATTGAAGTTCAAAAAACTTAAAAGACTTTTTAATAATTTTTGCTTGCACTTTGTTAGCTACATATAACTTTTATTTTAACTTCAATCATAAAAAATTTATTTCAATTATTTTTACATGAAATTTATGCTATATATCATAGCTATTTTTATTGGATTTTAAACCAAACTAACTAAATTTTAGTCATATAAAAATTTAAAACATCATAGATTTAAATTAATTTCTAAGTGTTTATTAATTTCTAAGTGAAACACGTGAAATAGTTTTTGAAAATCCAAATAAAGTGCCCCACCATGACTTTTTAGTTATAGAGTGTACATTGTACAATCTAAAACATGACAAAATAGATATGAATGCAAGTTTTGTTTCAATAGCAAGCCAAAATTGATGATGTAGGGTATCTTGGTAGGAGCGAAAATATTTGTTAAAAGGAAAATAAACATTTTTTAAATAATTCATAACGAAGCAAAAAACAATTTCAATACTCAAGCTATTATATGACCAAAGGTAATGAATGTTTCCAGTATTTGTGGCCCAAAGGATCAATTTCATGATAGAAAATATTAGTTTTTGACCAAAAATATTTTTTAATTATATCCAAAATAAAAGTTACATATTTAAAGTATTATTTGTAGTAGAAAATATTCTTTAATAATAATCTAAATTTAAATTACATTTTTAAAGTATCATTTTTAGTAGAAACCATCCTTTAAGATTTATAAATAAATAACTTTCATCCTTTTGTTAGATTTTGTCAAAAAAAACTAATGGATTTTATGAAACATGAACTATTAACGTGATTATCAAAAAAACTTATTCTGCATAATTTCATTACTTGCTACAAGAAGTTCTTGGAGCATATAAAATATTTTAGACATTGTTGCTTATGAAAACTAAAGATGATTGGAAGATATGCGCATACATAATTTGCCTTTTTCGTAACCGAATGAAGTTAGAGATTAATTATTTTTATTTTTTTCTTAACTAAATAATTCAATAGATTTTTACGTCAATCTAATATTGAAGTGACCAAAATATAGATTGTCTCGTATTTGAGTTTCATTCTACATTATTAGAAGCGGAAGTCTCCAGGAAATGTCGCTTTTAGCATATTCAATTGAGAAGAAACATATTTAAACTAATAAATTTTTTAATTAAAATTGCATAAAAATGAATTTAAAAAGACGGACAAATTAAAAGTTTTGCATAATTCTTAACTCAATTACGAAAATGTAACGACCAGTTTAGTAGTTTTGAGCAACAGATTTTATTTCTGGAAAAACAGACTGAGACGACGGATCCCACGACGGACCGTCATGGTAACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGACGTGACGGACCGTCACAGGCGTGACTGACCGTCACAGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGAACAGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACATTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAAGGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTCATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAAGAGAAAGAGGGAGAATTGAACGAGAAGAGGAAAACACAAGGCTTTGGGAAATTCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGAATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTAATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTG-GTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGG-AATAATAGATGTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGTAGTT--ATT-GATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGTCAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="117187" stop="111693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116887" g_stop="116561" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116560" i_stop="112320" i_length="4241">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112319" g_stop="111993" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="655" r_length="325" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116887" e_stop="116561"/>
          <exon e_start="112319" e_stop="111993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGAT-ATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGATTCAGTAATTTGAAGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATAGTACATTGAAATGTTAAGGTTTAGATTTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTGACAATCGCGACCCGATTTGGATCGTGACATATATCAATAAAAATATAAAAAAATTCAAAATGCTCGAAGCATATATTTTTAAAACTCAAGACTTATATTTTTTACTGAGAGTTAACTTATCCAAATTTTAAAATTTATGCCTTATAAATTTAAGTTTTCATTTTACATCTCGAAGCATTTTTAATACGTTCTAACTCGCTTCATAAATATTTTTGGAAACACCAATTGAAATGGATAAAGTCATTGTGAAATAAGATGAGTCATAATACACCTTTTTTTGTTAGAAATGGAGACAACTGTCCCTACCCCACAAAACCTATTTTGTCAGTAATGGGCTTAACTGGGCCCATATGGGCCAAAACCTATATATAACCCACGTGATTAGTACCAAAAAACTGATCTCACTATCGAGTATATATTGTATTGGTATCATTAATACTGAATAAATTTGCTTAATTATACTAAATCAGTATATATCATTAAAGTTTTTGTTCAAAATTAATGATACTAAATGAGCATATATTTAAATTTTATGCGGTATTTACTTAGTTTTCCCTATAAAATTAGTGTTAAAATGTTGTATTGGTAAAGTTTTTAATTATGTTAGAAAAATTATTTCTTATGCATAGTTTGATTAGTATATTAAAAATAACATGCTTAAATTAAAAAAGTATTTACAAAAATACTCTCCATATATATCATGGAAAAGACGTGGAAAACTTTTTGAGGGGAAATCGTATCTTTAGTCATATATTAATGCAAGCATTATGATTCTATGCATTAGGGATACCGTGAATTTTCATATATTAGTTAGTTATGTATACCTTAATATCAGAGTGGATACATTAGTTATATATAGCTAAAAAAGTGTATCAATTATGGTACTAGTGTTAGTAATATACATAAAGCTAATACATGTATTTTTATTTTTTTTAATACGTTCTATAAAACAATCCCTAAAGTTACAAATATTTGATTATTGAATTATCATTTAAATCATATTTACAATGTGTAAATTATATATAATTTTCACTTTTGGAATAATTTTAAATATACAATCTTTGATGTTTTATGAGATTGAAGTTCAAAAAACTTAAAAGACTTTTTAATAATTTTTGCTTGCACTTTGTTAGCTACATATAACTTTTATTTTAACTTCAATCATAAAAAATTTATTTCAATTATTTTTACATGAAATTTATGCTATATATCATAGCTATTTTTATTGGATTTTAAACCAAACTAACTAAATTTTAGTCATATAAAAATTTAAAACATCATAGATTTAAATTAATTTCTAAGTGTTTATTAATTTCTAAGTGAAACACGTGAAATAGTTTTTGAAAATCCAAATAAAGTGCCCCACCATGACTTTTTAGTTATAGAGTGTACATTGTACAATCTAAAACATGACAAAATAGATATGAATGCAAGTTTTGTTTCAATAGCAAGCCAAAATTGATGATGTAGGGTATCTTGGTAGGAGCGAAAATATTTGTTAAAAGGAAAATAAACATTTTTTAAATAATTCATAACGAAGCAAAAAACAATTTCAATACTCAAGCTATTATATGACCAAAGGTAATGAATGTTTCCAGTATTTGTGGCCCAAAGGATCAATTTCATGATAGAAAATATTAGTTTTTGACCAAAAATATTTTTTAATTATATCCAAAATAAAAGTTACATATTTAAAGTATTATTTGTAGTAGAAAATATTCTTTAATAATAATCTAAATTTAAATTACATTTTTAAAGTATCATTTTTAGTAGAAACCATCCTTTAAGATTTATAAATAAATAACTTTCATCCTTTTGTTAGATTTTGTCAAAAAAAACTAATGGATTTTATGAAACATGAACTATTAACGTGATTATCAAAAAAACTTATTCTGCATAATTTCATTACTTGCTACAAGAAGTTCTTGGAGCATATAAAATATTTTAGACATTGTTGCTTATGAAAACTAAAGATGATTGGAAGATATGCGCATACATAATTTGCCTTTTTCGTAACCGAATGAAGTTAGAGATTAATTATTTTTATTTTTTTCTTAACTAAATAATTCAATAGATTTTTACGTCAATCTAATATTGAAGTGACCAAAATATAGATTGTCTCGTATTTGAGTTTCATTCTACATTATTAGAAGCGGAAGTCTCCAGGAAATGTCGCTTTTAGCATATTCAATTGAGAAGAAACATATTTAAACTAATAAATTTTTTAATTAAAATTGCATAAAAATGAATTTAAAAAGACGGACAAATTAAAAGTTTTGCATAATTCTTAACTCAATTACGAAAATGTAACGACCAGTTTAGTAGTTTTGAGCAACAGATTTTATTTCTGGAAAAACAGACTGAGACGACGGATCCCACGACGGACCGTCATGGTAACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGACGTGACGGACCGTCACAGGCGTGACTGACCGTCACAGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGAACAGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACATTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAAGGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTCATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAAGAGAAAGAGGGAGAATTGAACGAGAAGAGGAAAACACAAGGCTTTGGGAAATTCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGAATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTAATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTG-TTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGG-AATAATAGATGTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGTAGTT--ATT-GATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="117187" stop="111768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116887" g_stop="116561" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116560" i_stop="112320" i_length="4241">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112319" g_stop="112068" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="580" r_length="250" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116887" e_stop="116561"/>
          <exon e_start="112319" e_stop="112068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGAT-ATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGATTCAGTAATTTGAAGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATAGTACATTGAAATGTTAAGGTTTAGATTTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTGACAATCGCGACCCGATTTGGATCGTGACATATATCAATAAAAATATAAAAAAATTCAAAATGCTCGAAGCATATATTTTTAAAACTCAAGACTTATATTTTTTACTGAGAGTTAACTTATCCAAATTTTAAAATTTATGCCTTATAAATTTAAGTTTTCATTTTACATCTCGAAGCATTTTTAATACGTTCTAACTCGCTTCATAAATATTTTTGGAAACACCAATTGAAATGGATAAAGTCATTGTGAAATAAGATGAGTCATAATACACCTTTTTTTGTTAGAAATGGAGACAACTGTCCCTACCCCACAAAACCTATTTTGTCAGTAATGGGCTTAACTGGGCCCATATGGGCCAAAACCTATATATAACCCACGTGATTAGTACCAAAAAACTGATCTCACTATCGAGTATATATTGTATTGGTATCATTAATACTGAATAAATTTGCTTAATTATACTAAATCAGTATATATCATTAAAGTTTTTGTTCAAAATTAATGATACTAAATGAGCATATATTTAAATTTTATGCGGTATTTACTTAGTTTTCCCTATAAAATTAGTGTTAAAATGTTGTATTGGTAAAGTTTTTAATTATGTTAGAAAAATTATTTCTTATGCATAGTTTGATTAGTATATTAAAAATAACATGCTTAAATTAAAAAAGTATTTACAAAAATACTCTCCATATATATCATGGAAAAGACGTGGAAAACTTTTTGAGGGGAAATCGTATCTTTAGTCATATATTAATGCAAGCATTATGATTCTATGCATTAGGGATACCGTGAATTTTCATATATTAGTTAGTTATGTATACCTTAATATCAGAGTGGATACATTAGTTATATATAGCTAAAAAAGTGTATCAATTATGGTACTAGTGTTAGTAATATACATAAAGCTAATACATGTATTTTTATTTTTTTTAATACGTTCTATAAAACAATCCCTAAAGTTACAAATATTTGATTATTGAATTATCATTTAAATCATATTTACAATGTGTAAATTATATATAATTTTCACTTTTGGAATAATTTTAAATATACAATCTTTGATGTTTTATGAGATTGAAGTTCAAAAAACTTAAAAGACTTTTTAATAATTTTTGCTTGCACTTTGTTAGCTACATATAACTTTTATTTTAACTTCAATCATAAAAAATTTATTTCAATTATTTTTACATGAAATTTATGCTATATATCATAGCTATTTTTATTGGATTTTAAACCAAACTAACTAAATTTTAGTCATATAAAAATTTAAAACATCATAGATTTAAATTAATTTCTAAGTGTTTATTAATTTCTAAGTGAAACACGTGAAATAGTTTTTGAAAATCCAAATAAAGTGCCCCACCATGACTTTTTAGTTATAGAGTGTACATTGTACAATCTAAAACATGACAAAATAGATATGAATGCAAGTTTTGTTTCAATAGCAAGCCAAAATTGATGATGTAGGGTATCTTGGTAGGAGCGAAAATATTTGTTAAAAGGAAAATAAACATTTTTTAAATAATTCATAACGAAGCAAAAAACAATTTCAATACTCAAGCTATTATATGACCAAAGGTAATGAATGTTTCCAGTATTTGTGGCCCAAAGGATCAATTTCATGATAGAAAATATTAGTTTTTGACCAAAAATATTTTTTAATTATATCCAAAATAAAAGTTACATATTTAAAGTATTATTTGTAGTAGAAAATATTCTTTAATAATAATCTAAATTTAAATTACATTTTTAAAGTATCATTTTTAGTAGAAACCATCCTTTAAGATTTATAAATAAATAACTTTCATCCTTTTGTTAGATTTTGTCAAAAAAAACTAATGGATTTTATGAAACATGAACTATTAACGTGATTATCAAAAAAACTTATTCTGCATAATTTCATTACTTGCTACAAGAAGTTCTTGGAGCATATAAAATATTTTAGACATTGTTGCTTATGAAAACTAAAGATGATTGGAAGATATGCGCATACATAATTTGCCTTTTTCGTAACCGAATGAAGTTAGAGATTAATTATTTTTATTTTTTTCTTAACTAAATAATTCAATAGATTTTTACGTCAATCTAATATTGAAGTGACCAAAATATAGATTGTCTCGTATTTGAGTTTCATTCTACATTATTAGAAGCGGAAGTCTCCAGGAAATGTCGCTTTTAGCATATTCAATTGAGAAGAAACATATTTAAACTAATAAATTTTTTAATTAAAATTGCATAAAAATGAATTTAAAAAGACGGACAAATTAAAAGTTTTGCATAATTCTTAACTCAATTACGAAAATGTAACGACCAGTTTAGTAGTTTTGAGCAACAGATTTTATTTCTGGAAAAACAGACTGAGACGACGGATCCCACGACGGACCGTCATGGTAACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAATTCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGACGTGACGGACCGTCACAGGCGTGACTGACCGTCACAGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTCTGAACCTTGCGACGACCTGCAGGACGAACAGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACATTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAAGGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTCATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAATAGAAAGAACAAAGAGAAAGAGGGAGAATTGAACGAGAAGAGGAAAACACAAGGCTTTGGGAAATTCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCTGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGAATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTAATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTG-TTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGG-AATAATAGATGTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGTAGTT--ATT-GATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="113802" stop="112481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113502" g_stop="112781" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113502" e_stop="112781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGA-TTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAGA-TTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="-" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="113802" stop="105687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113502" g_stop="113098" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113502" e_stop="113098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGA-TTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="118993" stop="119770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119293" g_stop="119469" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119293" e_stop="119469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="120545" stop="121503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120845" g_stop="121203" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120845" e_stop="121203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="121278" stop="122597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121578" g_stop="122297" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121578" e_stop="122297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTAGGTGGCATACCTTGATAATGCACGAATCTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAGCAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCGCATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACATCAAACCGTTCTACTATACCCATCTTGTGTAGTAGTTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCAGCATATTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAGTTTCCTCTTCCTCACCCTCTCT-TACAACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGAAAGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0066M20-FYXq3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0066M20.2" temp_strand="+" temp_description="C09SLe0066M20.2  AC216910.2 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0066M20 upload_account_name:spain (1 - 125256)">
        <position start="121281" stop="122546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121581" g_stop="122244" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0066M20.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0066M20.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121581" e_stop="122244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTAGGTGGCATACCTTGATAATGCACGAATCTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAGCAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCGCATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACATCAAACCGTTCTACTATACCCATCTTGTGTAGTAGTTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCAGCATATTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTT-CCTCATTCTGCACTTGCTCAGTTTCCTCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>89</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="64" PGL_stop="1005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64" e_stop="131"/>
            <exon e_start="358" e_stop="519"/>
            <exon e_start="609" e_stop="1005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64" e_stop="131" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="132" i_stop="357" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="358" e_stop="519" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="520" i_stop="608" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="609" e_stop="1005" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="131"/>
              <exon start="358" stop="519"/>
              <exon start="609" stop="1005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="131"/>
              <exon start="358" stop="519"/>
              <exon start="609" stop="907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="131"/>
              <exon start="358" stop="519"/>
              <exon start="609" stop="907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="131"/>
              <exon start="358" stop="519"/>
              <exon start="609" stop="907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64" stop="131"/>
              <exon start="358" stop="519"/>
              <exon start="609" stop="907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="372" stop="519"/>
              <exon start="609" stop="974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333615" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="373" stop="519"/>
              <exon start="609" stop="878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="378" stop="519"/>
              <exon start="609" stop="878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="417" stop="519"/>
              <exon start="609" stop="974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="429" stop="519"/>
              <exon start="609" stop="878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="431" stop="519"/>
              <exon start="609" stop="903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="455" stop="519"/>
              <exon start="609" stop="878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="457" stop="519"/>
              <exon start="609" stop="903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="664" stop="898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="687" stop="903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAG : GGTTGGGGAACCTCAGTGATTGTAGGTGTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAAAGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAG : GAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCGGACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCTTTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGAGAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAGTAAAATGTTCTTACTTTGAAGGCTAAAACCATCATTACTGGTTTTAGAGTTTGGCATAAACCATTGCCATGTTTGCATAAATGGAATCCTCCCTTTTCCAAAGTAG</gDNA_template>
            <first_frame> L  I  T  V  L  S  A  *  E  M  S  L  L  *  G  L  L  *  S  V  V  T  R :   V  G  E  P  Q  *  L  *  V  L  L  L  L  V  R  R  Y  L  H  V  H  F  S  W  *  L  V  V  F  G  R  E  L  L  L  V  V  S  K  A  D  H  K  F  L  P  S  W  T  S  I  *  R  R :   K  S  R  W  M  N  T  S  L  I  T  *  H  L  R  T  *  T  K  L  S  T  *  C  M  T  G  T  A  S  V  L  S  W  I  C  L  Y  E  *  S  L  *  A  L  Y  V  A  Y  F  L  F  L  C  Y  F  S  E  T  I  Y  L  S  P  C  *  L  C  V  E  *  K  E  S  E  K  K  R  I  K  M  T  D  E  L  F  L  N  G  W  *  F  I  I  F  S  S  K  M  F  L  L  *  R  L  K  P  S  L  L  V  L  E  F  G  I  N  H  C  H  V  C  I  N  G  I  L  P  F  P  K  * </first_frame>
            <second_frame>  *  L  Q  F  *  V  H  R  K  C  L  C  Y  E  V  C  F  R  V  L  S  Q   : G  L  G  N  L  S  D  C  R  C  C  C  F  W  S  G  D  I  Y  T  S  I  S  A  G  D  W  S  C  L  E  G  N  C  F  W  W  F  Q  K  P  I  T  S  S  F  P  R  G  Q  V  F  K  E   : G  N  Q  G  G  *  I  H  H  S  *  H  D  T  C  G  H  K  Q  S  F  R  P  D  A  *  R  G  L  P  P  C  C  P  G  Y  V  C  M  N  E  V  C  R  L  F  M  L  L  T  F  C  F  C  A  I  S  Q  R  L  F  T  F  P  L  A  N  Y  V  L  N  K  K  K  V  R  K  K  G  S  R  *  Q  M  N  S  F  *  M  D  G  S  L  L  S  F  Q  V  K  C  S  Y  F  E  G  *  N  H  H  Y  W  F  *  S  L  A  *  T  I  A  M  F  A  *  M  E  S  S  L  F  Q  S   </second_frame>
            <third_frame>   D  Y  S  F  E  C  I  G  N  V  S  V  M  R  S  A  L  E  C  C  H  K  :  G  W  G  T  S  V  I  V  G  V  A  A  S  G  Q  E  I  S  T  R  P  F  Q  L  V  T  G  R  V  W  K  G  T  A  F  G  G  F  K  S  R  S  Q  V  P  S  L  V  D  K  Y  L  K  K  :  E  I  K  V  D  E  Y  I  T  H  N  M  T  L  A  D  I  N  K  A  F  D  L  M  H  D  G  D  C  L  R  V  V  L  D  M  F  V  *  M  K  S  V  G  S  L  C  C  L  L  S  V  F  V  L  F  L  R  D  Y  L  P  F  P  L  L  I  M  C  *  I  K  R  K  *  E  K  K  D  Q  D  D  R  *  T  L  F  K  W  M  V  V  Y  Y  L  F  K  *  N  V  L  T  L  K  A  K  T  I  I  T  G  F  R  V  W  H  K  P  L  P  C  L  H  K  W  N  P  P  F  S  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66" stop="131"/>
                    <exon start="358" stop="519"/>
                    <exon start="609" stop="725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKAFDLMHDGDCLRVVLDMFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="974" PGL_stop="609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="974" e_stop="609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="974" e_stop="609" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="974" stop="609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACATGGCAATGGTTTATGCCAAACTCTAAAACCAGTAATGATGGTTTTAGCCTTCAAAGTAAGAACATTTTACTTGAAAAGATAATAAACTACCATCCATTTAAAAAGAGTTCATCTGTCATCTTGATCCTTTTTTTCTCACTTTCTTTTTATTCAACACATAATTAGCAAGGGGAAAGGTAAATAGTCTCTGAGAAATAGCACAAAAACAGAAAGTAAGCAACATAAAGAGCCTACAGACTTCATTCATACAAACATATCCAGGACAACACGGAGGCAGTCCCCGTCATGCATCAGGTCGAAAGCTTTGTTTATGTCCGCAAGTGTCATGTTATGAGTGATGTATTCATCCACCTTGATTTC</gDNA_template>
            <first_frame> Q  T  W  Q  W  F  M  P  N  S  K  T  S  N  D  G  F  S  L  Q  S  K  N  I  L  L  E  K  I  I  N  Y  H  P  F  K  K  S  S  S  V  I  L  I  L  F  F  S  L  S  F  Y  S  T  H  N  *  Q  G  E  R  *  I  V  S  E  K  *  H  K  N  R  K  *  A  T  *  R  A  Y  R  L  H  S  Y  K  H  I  Q  D  N  T  E  A  V  P  V  M  H  Q  V  E  S  F  V  Y  V  R  K  C  H  V  M  S  D  V  F  I  H  L  D  F </first_frame>
            <second_frame>  K  H  G  N  G  L  C  Q  T  L  K  P  V  M  M  V  L  A  F  K  V  R  T  F  Y  L  K  R  *  *  T  T  I  H  L  K  R  V  H  L  S  S  *  S  F  F  S  H  F  L  F  I  Q  H  I  I  S  K  G  K  G  K  *  S  L  R  N  S  T  K  T  E  S  K  Q  H  K  E  P  T  D  F  I  H  T  N  I  S  R  T  T  R  R  Q  S  P  S  C  I  R  S  K  A  L  F  M  S  A  S  V  M  L  *  V  M  Y  S  S  T  L  I   </second_frame>
            <third_frame>   N  M  A  M  V  Y  A  K  L  *  N  Q  *  *  W  F  *  P  S  K  *  E  H  F  T  *  K  D  N  K  L  P  S  I  *  K  E  F  I  C  H  L  D  P  F  F  L  T  F  F  L  F  N  T  *  L  A  R  G  K  V  N  S  L  *  E  I  A  Q  K  Q  K  V  S  N  I  K  S  L  Q  T  S  F  I  Q  T  Y  P  G  Q  H  G  G  S  P  R  H  A  S  G  R  K  L  C  L  C  P  Q  V  S  C  Y  E  *  C  I  H  P  P  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9849" PGL_stop="2573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9849" e_stop="9713"/>
            <exon e_start="6577" e_stop="6365"/>
            <exon e_start="6257" e_stop="6066"/>
            <exon e_start="5987" e_stop="5787"/>
            <exon e_start="5621" e_stop="5541"/>
            <exon e_start="4030" e_stop="3892"/>
            <exon e_start="3215" e_stop="3129"/>
            <exon e_start="3030" e_stop="2573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.688" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="9849" e_stop="9713" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9712" i_stop="6578" i_length="3135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6577" e_stop="6365" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="6364" i_stop="6258" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6257" e_stop="6066" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6065" i_stop="5988" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5987" e_stop="5787" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5786" i_stop="5622" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5621" e_stop="5541" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="5540" i_stop="4031" i_length="1510"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4030" e_stop="3892" e_length="139"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.992">
            <gDNA_intron_boundary i_start="3891" i_stop="3216" i_length="676"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3215" e_stop="3129" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.883" acc_prob="0.688">
            <gDNA_intron_boundary i_start="3128" i_stop="3031" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3030" e_stop="2573" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9849" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5787"/>
              <exon start="5621" stop="5541"/>
              <exon start="4030" stop="3892"/>
              <exon start="3215" stop="3129"/>
              <exon start="3030" stop="2595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9842" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9838" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9835" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9835" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9831" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9828" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9824" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9766" stop="9713"/>
              <exon start="6577" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5787"/>
              <exon start="5621" stop="5541"/>
              <exon start="4030" stop="3976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6498" stop="6365"/>
              <exon start="6257" stop="6066"/>
              <exon start="5987" stop="5855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4030" stop="3892"/>
              <exon start="3215" stop="3129"/>
              <exon start="3030" stop="2573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3961" stop="3892"/>
              <exon start="3215" stop="3129"/>
              <exon start="3030" stop="2590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303433" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2988" stop="2658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATACAAGTACCGGCAATAAAAGCTTAACAATGGCGTTATGGATGGAGGCAGGTTCTGAACCTAAAACAGAGAAAGAATTGGCTGACCTTGATGCTATCTCCGCTCTCAAAGAGTCTACTGCTTTTGAACTTAAG : GAACTAGGTAATGAACATGTCAAGAAAGGGAAGAAGCATTACTCGGATGCTATTGATTGCTATACAAGGGCAATAAATCAGAATGCTTTAAGTGATGCTGAGCAGTCAATTCTCTATTCAAACAGAGCTCATGTCAATCTTCTCTTGGGGAATTATAGACGTGCACTCCAGGATGCGGAAGATGCAATCAAATTAAATCCAAGTAGTGTTAAG : GCTCTTTATCGAGCAGCAAAAGCATCATTTTTTCTGAATCTTCTGGCTGAAGCAAAAGGGCTCTGCGAGAAAGGTCTTCAGCTCTCGTCATCAAGTGAAGAACTGAAGAAGCTTGCTAGGCACATCGATATACAGAAATCAGAAATGGATCGTCGTGATGCTGAAGAGTCTAAAGCAGTATCTTCTGCTAAG : ACCATTGTTTCTGCATTTGAGACTAGAGGATTGAAGATTGCGAAGCCCATGTATCAAGAACTCACTGGACTAAGAAAACCAACATTAGACAAAAATAATATTCTTCATTGGGCAGTTCTTCTTCTGTATCCAGAGGTCATGTCCAGTGACTTCATAGAGGAGTTCTGTGAGACCGACATGTTTTCAGCTCATCTTGATATG : ATGTTTTCAGAAGGTTGTCCACCTCTTCCTTGGGACAAAGAAAATGCTTACACTCGTGATGCTGTTGAGTTGTATTATGAG : GCTGGTGCTGGTGTCTGTTTATCCAAGCGGGATATTCTTCGGTATCTGCTGGAAGGAACAGCTGCTTCTCATGTGGAAGACTTTGGTGATGAGGAGAGCGCTTCTGCTCAGAGTTCAACCAAGGGTAGCATTTCACAAG : ATGTCCCTGGATGGGTTAAAATTAATGAGAAGACAACACTTTATAATGTTCTAAAGGAACCGCGGTGTGTAGTTCCTGGGCTTCCTG : TGTTTTGGGTTGTCTCGAGGAACTCAAGCTTCTATAATGAGTTCAAATCTGGAAATTGGTCTTCTCCAAAACTTCTATGAATTTGTCGTGGAGTTGCAAGTCCATTTTGAGTTCCTATTGTCTTGCAAGTACACTCAATGTACAAAACACTCCGTTCCGTGTTTGATAATATAACTGGGGTTCATTCGATATAAGTTCATTTTGTCCATGTAGAGAGCGGAGCGTTAGGGTACTTGCTCATATTTTGTAGATTAGCAGCTGTGCAAATCTCTCTAAGGTTTCAGTTTTTTGTGGATGTAAAATTATGGGAAGGAAGGTAATTATGTTTACCTGTTAACAAAATGAAGCATCTTTTTGTCATTTGTTAAAGGAAATTATGGGGGAGAAGGTGATCATGTAGAAAACTTAAATATGTTATCTTATGATTTATTTCGTTGCTCCATGCCCTTACTAATTAT</gDNA_template>
            <first_frame> H  I  Q  V  P  A  I  K  A  *  Q  W  R  Y  G  W  R  Q  V  L  N  L  K  Q  R  K  N  W  L  T  L  M  L  S  P  L  S  K  S  L  L  L  L  N  L  R :   N  *  V  M  N  M  S  R  K  G  R  S  I  T  R  M  L  L  I  A  I  Q  G  Q  *  I  R  M  L  *  V  M  L  S  S  Q  F  S  I  Q  T  E  L  M  S  I  F  S  W  G  I  I  D  V  H  S  R  M  R  K  M  Q  S  N  *  I  Q  V  V  L  R :   L  F  I  E  Q  Q  K  H  H  F  F  *  I  F  W  L  K  Q  K  G  S  A  R  K  V  F  S  S  R  H  Q  V  K  N  *  R  S  L  L  G  T  S  I  Y  R  N  Q  K  W  I  V  V  M  L  K  S  L  K  Q  Y  L  L  L  R :   P  L  F  L  H  L  R  L  E  D  *  R  L  R  S  P  C  I  K  N  S  L  D  *  E  N  Q  H  *  T  K  I  I  F  F  I  G  Q  F  F  F  C  I  Q  R  S  C  P  V  T  S  *  R  S  S  V  R  P  T  C  F  Q  L  I  L  I  * :   C  F  Q  K  V  V  H  L  F  L  G  T  K  K  M  L  T  L  V  M  L  L  S  C  I  M  R :   L  V  L  V  S  V  Y  P  S  G  I  F  F  G  I  C  W  K  E  Q  L  L  L  M  W  K  T  L  V  M  R  R  A  L  L  L  R  V  Q  P  R  V  A  F  H  K  :  M  S  L  D  G  L  K  L  M  R  R  Q  H  F  I  M  F  *  R  N  R  G  V  *  F  L  G  F  L  :  C  F  G  L  S  R  G  T  Q  A  S  I  M  S  S  N  L  E  I  G  L  L  Q  N  F  Y  E  F  V  V  E  L  Q  V  H  F  E  F  L  L  S  C  K  Y  T  Q  C  T  K  H  S  V  P  C  L  I  I  *  L  G  F  I  R  Y  K  F  I  L  S  M  *  R  A  E  R  *  G  T  C  S  Y  F  V  D  *  Q  L  C  K  S  L  *  G  F  S  F  L  W  M  *  N  Y  G  K  E  G  N  Y  V  Y  L  L  T  K  *  S  I  F  L  S  F  V  K  G  N  Y  G  G  E  G  D  H  V  E  N  L  N  M  L  S  Y  D  L  F  R  C  S  M  P  L  L  I   </first_frame>
            <second_frame>  T  Y  K  Y  R  Q  *  K  L  N  N  G  V  M  D  G  G  R  F  *  T  *  N  R  E  R  I  G  *  P  *  C  Y  L  R  S  Q  R  V  Y  C  F  *  T  *   : G  T  R  *  *  T  C  Q  E  R  E  E  A  L  L  G  C  Y  *  L  L  Y  K  G  N  K  S  E  C  F  K  *  C  *  A  V  N  S  L  F  K  Q  S  S  C  Q  S  S  L  G  E  L  *  T  C  T  P  G  C  G  R  C  N  Q  I  K  S  K  *  C  *   : G  S  L  S  S  S  K  S  I  I  F  S  E  S  S  G  *  S  K  R  A  L  R  E  R  S  S  A  L  V  I  K  *  R  T  E  E  A  C  *  A  H  R  Y  T  E  I  R  N  G  S  S  *  C  *  R  V  *  S  S  I  F  C  *   : D  H  C  F  C  I  *  D  *  R  I  E  D  C  E  A  H  V  S  R  T  H  W  T  K  K  T  N  I  R  Q  K  *  Y  S  S  L  G  S  S  S  S  V  S  R  G  H  V  Q  *  L  H  R  G  V  L  *  D  R  H  V  F  S  S  S  *  Y   : D  V  F  R  R  L  S  T  S  S  L  G  Q  R  K  C  L  H  S  *  C  C  *  V  V  L  *   : G  W  C  W  C  L  F  I  Q  A  G  Y  S  S  V  S  A  G  R  N  S  C  F  S  C  G  R  L  W  *  *  G  E  R  F  C  S  E  F  N  Q  G  *  H  F  T  R :   C  P  W  M  G  *  N  *  *  E  D  N  T  L  *  C  S  K  G  T  A  V  C  S  S  W  A  S  C :   V  L  G  C  L  E  E  L  K  L  L  *  *  V  Q  I  W  K  L  V  F  S  K  T  S  M  N  L  S  W  S  C  K  S  I  L  S  S  Y  C  L  A  S  T  L  N  V  Q  N  T  P  F  R  V  *  *  Y  N  W  G  S  F  D  I  S  S  F  C  P  C  R  E  R  S  V  R  V  L  A  H  I  L  *  I  S  S  C  A  N  L  S  K  V  S  V  F  C  G  C  K  I  M  G  R  K  V  I  M  F  T  C  *  Q  N  E  A  S  F  C  H  L  L  K  E  I  M  G  E  K  V  I  M  *  K  T  *  I  C  Y  L  M  I  Y  F  V  A  P  C  P  Y  *  L  </second_frame>
            <third_frame>   H  T  S  T  G  N  K  S  L  T  M  A  L  W  M  E  A  G  S  E  P  K  T  E  K  E  L  A  D  L  D  A  I  S  A  L  K  E  S  T  A  F  E  L  K  :  E  L  G  N  E  H  V  K  K  G  K  K  H  Y  S  D  A  I  D  C  Y  T  R  A  I  N  Q  N  A  L  S  D  A  E  Q  S  I  L  Y  S  N  R  A  H  V  N  L  L  L  G  N  Y  R  R  A  L  Q  D  A  E  D  A  I  K  L  N  P  S  S  V  K  :  A  L  Y  R  A  A  K  A  S  F  F  L  N  L  L  A  E  A  K  G  L  C  E  K  G  L  Q  L  S  S  S  S  E  E  L  K  K  L  A  R  H  I  D  I  Q  K  S  E  M  D  R  R  D  A  E  E  S  K  A  V  S  S  A  K  :  T  I  V  S  A  F  E  T  R  G  L  K  I  A  K  P  M  Y  Q  E  L  T  G  L  R  K  P  T  L  D  K  N  N  I  L  H  W  A  V  L  L  L  Y  P  E  V  M  S  S  D  F  I  E  E  F  C  E  T  D  M  F  S  A  H  L  D  M  :  M  F  S  E  G  C  P  P  L  P  W  D  K  E  N  A  Y  T  R  D  A  V  E  L  Y  Y  E  :  A  G  A  G  V  C  L  S  K  R  D  I  L  R  Y  L  L  E  G  T  A  A  S  H  V  E  D  F  G  D  E  E  S  A  S  A  Q  S  S  T  K  G  S  I  S  Q   : D  V  P  G  W  V  K  I  N  E  K  T  T  L  Y  N  V  L  K  E  P  R  C  V  V  P  G  L  P   : V  F  W  V  V  S  R  N  S  S  F  Y  N  E  F  K  S  G  N  W  S  S  P  K  L  L  *  I  C  R  G  V  A  S  P  F  *  V  P  I  V  L  Q  V  H  S  M  Y  K  T  L  R  S  V  F  D  N  I  T  G  V  H  S  I  *  V  H  F  V  H  V  E  S  G  A  L  G  Y  L  L  I  F  C  R  L  A  A  V  Q  I  S  L  R  F  Q  F  F  V  D  V  K  L  W  E  G  R  *  L  C  L  P  V  N  K  M  K  H  L  F  V  I  C  *  R  K  L  W  G  R  R  *  S  C  R  K  L  K  Y  V  I  L  *  F  I  S  L  L  H  A  L  T  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9847" stop="9713"/>
                    <exon start="6577" stop="6365"/>
                    <exon start="6257" stop="6066"/>
                    <exon start="5987" stop="5787"/>
                    <exon start="5621" stop="5541"/>
                    <exon start="4030" stop="3892"/>
                    <exon start="3215" stop="3129"/>
                    <exon start="3030" stop="2951"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTSTGNKSLTMALWMEAGSEPKTEKELADLDAISALKESTAFELKELGNEHVKKGKKHYSDAIDCYTRAINQNALSDAEQSILYSNRAHVNLLLGNYRRALQDAEDAIKLNPSSVKALYRAAKASFFLNLLAEAKGLCEKGLQLSSSSEELKKLARHIDIQKSEMDRRDAEESKAVSSAKTIVSAFETRGLKIAKPMYQELTGLRKPTLDKNNILHWAVLLLYPEVMSSDFIEEFCETDMFSAHLDMMFSEGCPPLPWDKENAYTRDAVELYYEAGAGVCLSKRDILRYLLEGTAASHVEDFGDEESASAQSSTKGSISQDVPGWVKINEKTTLYNVLKEPRCVVPGLPVFWVVSRNSSFYNEFKSGNWSSPKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19132" PGL_stop="18802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19132" e_stop="18802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="19132" e_stop="18802" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19132" stop="18802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAACTCATATCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAACGTTACAAGACAAGACCTACACACCTTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGGAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAATCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  L  R  L  Q  S  L  E  K  A  N  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  T  L  Q  D  K  T  Y  T  P  F  Q  L  L  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  E  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  N  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  *  D  C  K  V  W  R  K  P  T  H  I  Q  N  Y  I  E  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  R  Y  K  T  R  P  T  H  L  F  N  Y  Y  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  R  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  I  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  L  I  S  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  N  V  T  R  Q  D  L  H  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  G  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  S  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19001" stop="18804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTNVTRQDLHTFSTITDSPTGVETRIGMSSNSQCKLRPVGNEEDTYENVDPGSNNTESMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="18832" PGL_stop="19492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18832" e_stop="19492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="18832" e_stop="19492" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18832" stop="19492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTCCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTAATAGTTGAAAAGGTGTGTAGGTCTTGTCTTGTAACGTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGATATGAGTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCTACTCCAGTTCGTATCATCTCCTTCCTTCGCGCTAAGAAAATGGTTAGAAAGGGTTGTTTAGCTTTCTTCGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGACGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGATCTTCCTGGTATGCCACCGGATAGGGATATCGACTTTTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  P  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  C  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  D  M  S  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  K  M  V  R  K  G  C  L  A  F  F  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  T  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  F  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  V  G  L  V  L  *  R  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  S  M  *  F  W  I  *  V  G  F  L  Q  T  L  Q  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  L  L  Q  F  V  S  S  P  S  F  A  L  R  K  W  L  E  R  V  V  *  L  S  S  H  T  S  G  M  I  L  P  K  Y  L  Q  L  R  R  F  Q  *  S  V  S  F  W  M  C  F  P  Q  I  F  L  V  C  H  R  I  G  I  S  T  F  V  L  I  W  S  W  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  S  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  N  S  *  K  G  V  *  V  L  S  C  N  V  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  R  C  N  S  G  Y  E  L  A  F  S  K  L  C  N  L  R  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Y  S  S  S  Y  H  L  L  P  S  R  *  E  N  G  *  K  G  L  F  S  F  L  R  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  D  G  F  N  S  P  *  V  S  G  C  V  S  R  R  S  S  W  Y  A  T  G  *  G  Y  R  L  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  R  V  K  G  P  T  S  R  V  V  K  Q  R  L  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18832" stop="19491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFPTGLNLHCELLDMPIRVSTPVGESVIVEKVCRSCLVTFVGSNTHVDLVILEMVDFDVILDMSWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLRAKKMVRKGCLAFFAHLRDDTTQVPSIETVSIVREFLDVFPADLPGMPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="21382" PGL_stop="20351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21382" e_stop="20351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="21382" e_stop="20351" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21382" stop="20841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20937" stop="20351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20937" stop="20351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20937" stop="20384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAAGTTAGAAGTAAACTGTGTACCTCTATCTGATATGATGGAGAGTGGGACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAGTCGGTCAACGATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAGTCAACAATGTCACGCTTCATTCTACTCCACCAAAAATGTTTCTTTAGGTCATGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACATTCCTCATCGATTTTTGCTTCTTTAGTCTCTCCTCGCAACGCCTTATCTCGGATCCGGATCAGTTTCTCATCATTAAATTGCTTTCCCTTAATCTTGTCAAGAAAGAAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACAACATTAGCTTTTCCTGGATGATACAATATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGCCTTAGATTCAAATCTTTCTGAGTAAAGACATATTGTAGGCTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCGTGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  K  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  S  R  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  F  F  R  S  *  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  W  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  H  S  S  S  I  F  A  S  L  V  S  P  R  N  A  L  S  R  I  R  I  S  F  S  S  L  N  C  F  P  L  I  L  S  R  K  K  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  I  K  L  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  N  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  R  F  K  S  F  *  V  K  T  Y  C  R  L  R  *  S  I  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  S  *  K  *  T  V  Y  L  Y  L  I  *  W  R  V  G  L  H  A  I  E  Q  F  L  R  C  K  V  W  L  T  S  L  H  C  K  S  P  *  P  E  *  N  E  Q  T  *  L  V  G  Q  R  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  Q  Q  S  Q  Q  C  H  A  S  F  Y  S  T  K  N  V  S  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  G  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  I  P  H  R  F  L  L  L  *  S  L  L  A  T  P  Y  L  G  S  G  S  V  S  H  H  *  I  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  K  P  K  I  L  P  S  H  L  L  L  A  S  *  S  Y  *  P  E  S  E  L  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  R  H  L  P  Q  H  *  L  F  L  D  D  T  I  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  A  L  D  S  N  L  S  E  *  R  H  I  V  G  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  P  P  L  T  P  N  H  G  S  D  N  Y  V  R  A  P  L  I   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  V  R  S  K  L  C  T  S  I  *  Y  D  G  E  W  D  S  M  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  C  I  V  S  H  L  D  R  N  E  M  S  R  L  S  *  S  V  N  D  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  V  N  N  V  T  L  H  S  T  P  P  K  M  F  L  *  V  M  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  D  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  R  L  I  S  D  P  D  Q  F  L  I  I  K  L  L  S  L  N  L  V  K  K  E  R  S  C  L  H  T  S  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  F  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  P  C  L  S  T  *  G  I  C  H  N  I  S  F  S  W  M  I  Q  Y  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  P  *  I  Q  I  F  L  S  K  D  I  L  *  A  T  M  I  H  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  R  R  *  L  Q  I  M  G  R  I  I  T  F  V  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21219" stop="20956"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGQRLPKWSHTYPLSLEDQPRSPLQFSPTSIQEWAFSEVSLQASGVHTLLADNSGIEQQSQQCHASFYSTKNVSLGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20938" stop="20678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASVRIVWIKSSTRGTHTLPLILKTHSSSIFASLVSPRNALSRIRISFSSLNCFPLILSRKKDLASTQAKNPPFSFTSSLIKLLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20945" stop="20706"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVDQIIDAGYTYPSLNSQNTFLIDFCFFSLSSQRLISDPDQFLIIKLLSLNLVKKERSCLHTSQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21215" stop="20991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNDYPNGVILTHCLWKTNHEVHCNSLPLPFRNGHSLKCPSRPLVFILYLLTIRALSNKVNNVTLHSTPPKMFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37009" PGL_stop="36358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37009" e_stop="36358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="37009" e_stop="36358" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37009" stop="36358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAAGCTTCTCCCATAGATTCTGGATATTTTGTTGACTTCTGAATGTTGGTGGTGTCCTTGACGAAACATGGCCTTCTGGTTTCTTCAAAGTTTTTTCTTTTAAAAACAAAATTAGGAATGCTTCTCCCATTTAAAGGGTAGCAAGGTACATAGGGTTAAAGAATTAGGGTTAACAGGTTCAGTTTTCTTCTGGTGTAAACTGCTTTTGTTTCTGAAACACAAACAAATCCATTCACCTGTAAATGGTACTAATCTCTTATGTTATGCTATCTAAATGACAGCTTTTTTTTCTCAAAAACTGATTCTAGTTAAGAGATGTGATATACAATTGTCAATTTTTATGAATATCTGTGGCCTGGAACTTATTGGTTTTGTGGGTTTTACCAGTTTTGCAACAGTTAAAAAATTCATCTGTACTTGGTGCTAATTTCTTATGTAAAGCTAACTTAATAGCAGCTGTTTTCACTTGAAAATGGACTAGTCAAGATATGATTTACAATTTTTTTTTAAAAATGGATATCTGTGCTTTGCCTGGACCTCAATGGTTTTATTGATGACTAGTTTTGTAACAGTTGAGGAATTAACCTTGTATTTGCTGGGCAACAACACTGATGGTTAGGTGATTCTTGCCTGCTGTCGAAGTCTTGCT</gDNA_template>
            <first_frame> P  E  A  S  P  I  D  S  G  Y  F  V  D  F  *  M  L  V  V  S  L  T  K  H  G  L  L  V  S  S  K  F  F  L  L  K  T  K  L  G  M  L  L  P  F  K  G  *  Q  G  T  *  G  *  R  I  R  V  N  R  F  S  F  L  L  V  *  T  A  F  V  S  E  T  Q  T  N  P  F  T  C  K  W  Y  *  S  L  M  L  C  Y  L  N  D  S  F  F  F  S  K  T  D  S  S  *  E  M  *  Y  T  I  V  N  F  Y  E  Y  L  W  P  G  T  Y  W  F  C  G  F  Y  Q  F  C  N  S  *  K  I  H  L  Y  L  V  L  I  S  Y  V  K  L  T  *  *  Q  L  F  S  L  E  N  G  L  V  K  I  *  F  T  I  F  F  *  K  W  I  S  V  L  C  L  D  L  N  G  F  I  D  D  *  F  C  N  S  *  G  I  N  L  V  F  A  G  Q  Q  H  *  W  L  G  D  S  C  L  L  S  K  S  C  </first_frame>
            <second_frame>  L  K  L  L  P  *  I  L  D  I  L  L  T  S  E  C  W  W  C  P  *  R  N  M  A  F  W  F  L  Q  S  F  F  F  *  K  Q  N  *  E  C  F  S  H  L  K  G  S  K  V  H  R  V  K  E  L  G  L  T  G  S  V  F  F  W  C  K  L  L  L  F  L  K  H  K  Q  I  H  S  P  V  N  G  T  N  L  L  C  Y  A  I  *  M  T  A  F  F  S  Q  K  L  I  L  V  K  R  C  D  I  Q  L  S  I  F  M  N  I  C  G  L  E  L  I  G  F  V  G  F  T  S  F  A  T  V  K  K  F  I  C  T  W  C  *  F  L  M  *  S  *  L  N  S  S  C  F  H  L  K  M  D  *  S  R  Y  D  L  Q  F  F  F  K  N  G  Y  L  C  F  A  W  T  S  M  V  L  L  M  T  S  F  V  T  V  E  E  L  T  L  Y  L  L  G  N  N  T  D  G  *  V  I  L  A  C  C  R  S  L  A </second_frame>
            <third_frame>   *  S  F  S  H  R  F  W  I  F  C  *  L  L  N  V  G  G  V  L  D  E  T  W  P  S  G  F  F  K  V  F  S  F  K  N  K  I  R  N  A  S  P  I  *  R  V  A  R  Y  I  G  L  K  N  *  G  *  Q  V  Q  F  S  S  G  V  N  C  F  C  F  *  N  T  N  K  S  I  H  L  *  M  V  L  I  S  Y  V  M  L  S  K  *  Q  L  F  F  L  K  N  *  F  *  L  R  D  V  I  Y  N  C  Q  F  L  *  I  S  V  A  W  N  L  L  V  L  W  V  L  P  V  L  Q  Q  L  K  N  S  S  V  L  G  A  N  F  L  C  K  A  N  L  I  A  A  V  F  T  *  K  W  T  S  Q  D  M  I  Y  N  F  F  L  K  M  D  I  C  A  L  P  G  P  Q  W  F  Y  *  *  L  V  L  *  Q  L  R  N  *  P  C  I  C  W  A  T  T  L  M  V  R  *  F  L  P  A  V  E  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="72364" PGL_stop="71790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72364" e_stop="71790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="72364" e_stop="71790" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72364" stop="71790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGAAGATATCAGTGTTATTTAGAGACTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCGGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</gDNA_template>
            <first_frame> K  L  G  L  D  S  S  N  K  C  E  F  V  K  Y  L  E  Q  G  T  D  D  I  T  N  D  N  G  I  P  E  L  L  N  W  W  R  N  R  G  A  Q  Y  P  K  L  S  R  M  V  K  D  V  L  A  I  Q  G  S  S  V  A  S  E  A  A  F  S  A  A  R  F  Q  I  G  D  H  R  Y  S  L  A  E  D  S  L  K  I  S  V  L  F  R  D  W  I  N  A  E  R  R  N  Q  G  L  P  K  L  D  S  Q  F  E  L  F  I  D  S  T  I  G  C  G  S  D  D  G  I  E  I  Q  D  R  Q  R  A  L  P  R  P  E  V  D  H  N  Q  S  L  A  E  L  E  R  G  F  T  G  L  Y  N  Y  *  Y  Y  I  R  D  I  V  E  T  E  P  F  L  E  G  G  C  V  S  Y  V  L  Y  *  *  L  *  I  E   </first_frame>
            <second_frame>  N  L  V  L  T  L  L  I  N  V  N  L  L  N  I  L  N  R  V  Q  M  I  L  Q  T  I  M  V  Y  R  N  Y  *  T  G  G  E  I  V  E  L  N  I  Q  N  L  V  G  W  *  R  M  C  L  Q  F  K  D  H  Q  *  L  R  R  Q  L  S  A  R  Q  D  F  K  L  E  T  T  D  I  R  *  Q  K  T  A  *  R  Y  Q  C  Y  L  E  T  G  *  M  L  S  V  E  I  K  D  F  Q  S  *  I  V  N  L  N  F  S  *  I  Q  L  L  D  V  V  V  T  M  A  S  K  F  K  I  V  N  E  L  Y  Q  D  Q  K  L  I  T  I  N  P  *  R  S  *  K  E  D  L  R  D  Y  T  T  I  S  I  T  F  E  T  *  L  K  Q  N  P  S  *  K  V  A  A  *  A  M  Y  S  T  N  S  C  K  L  K  </second_frame>
            <third_frame>   T  W  S  *  L  F  *  *  M  *  I  C  *  I  S  *  T  G  Y  R  *  Y  Y  K  R  *  W  Y  T  G  T  I  E  L  V  E  K  S  W  S  S  I  S  K  T  *  *  D  G  E  G  C  A  C  N  S  R  I  I  S  S  F  G  G  S  F  Q  R  G  K  I  S  N  W  R  P  Q  I  F  V  S  R  R  Q  P  E  D  I  S  V  I  *  R  L  D  K  C  *  A  *  K  S  R  T  S  K  V  R  *  S  I  *  T  F  H  R  F  N  Y  W  M  W  *  *  R  W  H  R  N  S  R  S  S  T  S  F  T  K  T  R  S  *  S  Q  S  I  P  S  G  V  R  K  R  I  Y  G  T  I  Q  L  L  V  L  H  S  R  H  S  *  N  R  T  L  P  R  R  W  L  R  K  L  C  T  L  L  I  V  V  N  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72364" stop="71879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGLDSSNKCEFVKYLEQGTDDITNDNGIPELLNWWRNRGAQYPKLSRMVKDVLAIQGSSVASEAAFSAARFQIGDHRYSLAEDSLKISVLFRDWINAERRNQGLPKLDSQFELFIDSTIGCGSDDGIEIQDRQRALPRPEVDHNQSLAELERGFTGLYNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="74119" PGL_stop="74583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74119" e_stop="74583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="74119" e_stop="74583" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74119" stop="74583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATACCATAATATCTTTCATAGAGTTCATGGGGAGTCGGACTATCTGAATTAATATTTATAGGACCGGGACGGGAAAAACTAGTTTCATTCACATGCGTAAATTCATCTGTATTTATTCTAACAAGAGGAATTTTAGATTTAGACGAACTAGCACCTTTGTTAGTTTTTTTAACTAATTTTTTTACTGATTCTACTAGACCTTTTTTACTTCCACTTTTTTTAGAAGACTCCATGATATAAAATTATAAATTATAAAATACGAAACTTAACAAGAACAACTTACAAGTTAAATAATAAATTAAAAAAATAAATATAAGATTAGAGAGTGGAACGAAGTTACCAAACGTTTGTATAAGAACAAACGATTATAATGAAAATTAAAATATTGATGTCGAAACTTGAAATTTGAAGAAGATTCCTCCTCCGAAATACACCAAATGACCAAATGATATAAGTTATAC</gDNA_template>
            <first_frame> I  N  T  I  I  S  F  I  E  F  M  G  S  R  T  I  *  I  N  I  Y  R  T  G  T  G  K  T  S  F  I  H  M  R  K  F  I  C  I  Y  S  N  K  R  N  F  R  F  R  R  T  S  T  F  V  S  F  F  N  *  F  F  Y  *  F  Y  *  T  F  F  T  S  T  F  F  R  R  L  H  D  I  K  L  *  I  I  K  Y  E  T  *  Q  E  Q  L  T  S  *  I  I  N  *  K  N  K  Y  K  I  R  E  W  N  E  V  T  K  R  L  Y  K  N  K  R  L  *  *  K  L  K  Y  *  C  R  N  L  K  F  E  E  D  S  S  S  E  I  H  Q  M  T  K  *  Y  K  L  Y </first_frame>
            <second_frame>  L  I  P  *  Y  L  S  *  S  S  W  G  V  G  L  S  E  L  I  F  I  G  P  G  R  E  K  L  V  S  F  T  C  V  N  S  S  V  F  I  L  T  R  G  I  L  D  L  D  E  L  A  P  L  L  V  F  L  T  N  F  F  T  D  S  T  R  P  F  L  L  P  L  F  L  E  D  S  M  I  *  N  Y  K  L  *  N  T  K  L  N  K  N  N  L  Q  V  K  *  *  I  K  K  I  N  I  R  L  E  S  G  T  K  L  P  N  V  C  I  R  T  N  D  Y  N  E  N  *  N  I  D  V  E  T  *  N  L  K  K  I  P  P  P  K  Y  T  K  *  P  N  D  I  S  Y   </second_frame>
            <third_frame>   *  Y  H  N  I  F  H  R  V  H  G  E  S  D  Y  L  N  *  Y  L  *  D  R  D  G  K  N  *  F  H  S  H  A  *  I  H  L  Y  L  F  *  Q  E  E  F  *  I  *  T  N  *  H  L  C  *  F  F  *  L  I  F  L  L  I  L  L  D  L  F  Y  F  H  F  F  *  K  T  P  *  Y  K  I  I  N  Y  K  I  R  N  L  T  R  T  T  Y  K  L  N  N  K  L  K  K  *  I  *  D  *  R  V  E  R  S  Y  Q  T  F  V  *  E  Q  T  I  I  M  K  I  K  I  L  M  S  K  L  E  I  *  R  R  F  L  L  R  N  T  P  N  D  Q  M  I  *  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74144" stop="74362"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSWGVGLSELIFIGPGREKLVSFTCVNSSVFILTRGILDLDELAPLLVFLTNFFTDSTRPFLLPLFLEDSMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88614" PGL_stop="88899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88614" e_stop="88899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="88614" e_stop="88899" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88614" stop="88899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGGTTCGTTGTTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTATTTCTTTTGTTCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  F  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  P  F  F  L  Y  F  F  C  S  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  L  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  C  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  I  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  W  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  V  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  S  I  L  S  L  F  L  L  F  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88663" stop="88899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFISFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHWQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="88973" PGL_stop="89526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88973" e_stop="89526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="88973" e_stop="89526" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88973" stop="89526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAACAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGTCACCTCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGACACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  N  R  G  *  G  W  G  E  *  T  S  A  E  *  G  I  V  T  S  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  N  T  S  G  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  K  R  Q  N  V  V  A  I  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  T  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  S  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  T  P  P  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  D  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  W  *  Q  R  V  R  M  G  R  M  N  K  C  R  M  R  N  C  H  L  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  T  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  E  T  P  K  C  G  G  D  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88974" stop="89525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVTEGEDGENEQVQNEELSPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPTPPVPEVQHAATVAPRMDASLEIDTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="89696" PGL_stop="88977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89696" e_stop="88977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="89696" e_stop="88977" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89696" stop="88977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89693" stop="89030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTTGGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGATCGCCACCACATTTTGGCGTTTCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGTCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCTGCATGTTGTACCTCCGGAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGAGGTGACAATTCCTCATTCTGCACTTGTTCATTCTCCCCATCCTCACCCTCTGTTACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCT</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  W  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  S  P  P  H  F  G  V  S  L  K  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  V  Y  F  Q  *  G  I  H  A  G  S  H  S  S  C  M  L  Y  L  R  N  R  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  R  *  Q  F  L  I  L  H  L  F  I  L  P  I  L  T  L  C  Y  H  F  L  S  W  W  R  S  H  R  P  S  T  R  W  A </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  G  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  S  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  G  T  G  G  V  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  *  G  D  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  V  T  T  S  S  V  G  G  G  V  T  A  L  V  P  D  G   </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  L  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  I  A  T  T  F  W  R  F  L  E  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  T  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  L  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  S  G  P  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  E  V  T  I  P  H  S  A  L  V  H  S  P  H  P  H  P  L  L  P  L  P  Q  L  V  E  E  S  P  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89695" stop="89486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKQSWVAYLDNARNLASYAVTDILPCSRLKNSSLFLSLKVGGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="91610" PGL_stop="90266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91610" e_stop="90266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="91610" e_stop="90266" e_length="1345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91610" stop="91090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91543" stop="90867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91028" stop="90266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91028" stop="90367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTGACCCAATTCTTCACCGTCTCAATCTTAGAAGGATCCACATCACCTCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGACATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCCTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGATTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGACCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAATCCCATCCTTCTTCTTCACAAACAAAACCAGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTTCTCAACAACTCTTGAAGTTGGGCCTTTAACTCCCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTGAAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATATGAACCAGATTGGAAGTGTAGTCGCCCTCCCACAATAACGGATCTGTCCCAGACTAGGCTAACGCCACAGTTTTAGCATTACAATCCAAGATCGCAAAATTCAGAGAAAGCCAAGTCATACCCAGAATTATATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTATTGCTCCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAATATACATATGAAAATGTGGAGCCGGGATCAAATAATACAGCAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATCTGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  *  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  D  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  V  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  T  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  *  *  L  L  F  N  C  R  *  S  M  H  I  R  K  I  P  S  F  F  F  T  N  K  T  R  A  P  Q  G  D  A  L  G  L  M  K  P  F  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  E  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Q  P  L  L  T  I  L  L  A  R  R  K  E  M  I  *  T  R  L  E  V  *  S  P  S  H  N  N  G  S  V  P  D  *  A  N  A  T  V  L  A  L  Q  S  K  I  A  K  F  R  E  S  Q  V  I  P  R  I  I  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  I  Y  I  *  K  C  G  A  G  I  K  *  Y  S  S  H  T  I  T  N  Q  K  I  T  C  D  N  S  I  *  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  *  P  N  S  S  P  S  Q  S  *  K  D  P  H  H  L  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  D  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  P  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  I  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  S  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  P  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  S  Y  C  S  T  A  G  S  L  C  T  S  E  K  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  F  S  T  T  L  E  V  G  P  L  T  P  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  T  R  G  L  S  K  P  T  Q  L  K  V  L  G  *  Y  H  P  *  G  V  P  R  K  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  P  D  W  K  C  S  R  P  P  T  I  T  D  L  S  Q  T  R  L  T  P  Q  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  Y  Q  N  Q  P  F  L  R  *  P  N  L  H  K  Y  C  S  P  T  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  Y  T  Y  E  N  V  E  P  G  S  N  N  T  A  A  I  Q  S  Q  T  K  R  L  P  V  I  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  D  P  I  L  H  R  L  N  L  R  R  I  H  I  T  S  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  T  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  L  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  V  T  V  Q  L  P  V  V  Y  A  H  P  K  N  P  I  L  L  L  H  K  Q  N  Q  S  T  P  R  G  C  T  W  S  N  E  A  F  S  Q  Q  L  L  K  L  G  L  *  L  P  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  L  A  D  Y  R  N  R  L  N  *  R  Y  L  G  S  I  I  P  E  V  C  Q  E  S  *  T  T  L  T  N  H  S  L  S  T  K  K  G  D  D  M  N  Q  I  G  S  V  V  A  L  P  Q  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  R  K  I  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  I  A  P  P  Q  K  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  N  I  H  M  K  M  W  S  R  D  Q  I  I  Q  Q  P  Y  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90508" stop="90266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLHKYCSPTKVTKQDLYTFSTITDSPTGVDTRIGMSSNSQCKLRPVANEEYTYENVEPGSNNTAAIQSQTKRLPVITASD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91351" stop="91112"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWIKNPVHQAHESSRGIRKTKRHHYKFVMSIPGPKSSLWHIRCPYFQLMITGPQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90890" stop="90663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSAGNTSENSRTIETDSIEGTWVVSSLRCAKKAKQPLLTILLARRKEMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91419" stop="91222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSLLLFEYTNISSINTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="93091" PGL_stop="92915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93091" e_stop="92915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="93091" e_stop="92915" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93091" stop="92915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAATTCCTCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAACATATCCTCCAACACTTGGATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  S  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  N  I  S  S  N  T  W  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  R  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  D  H  Q  I  L  S  H  M  H  E  T  Y  P  P  T  L  G  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  F  L  *  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  D  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96605" PGL_stop="103946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96607" e_stop="96733"/>
            <exon e_start="96819" e_stop="96939"/>
            <exon e_start="97680" e_stop="97752"/>
            <exon e_start="97946" e_stop="98233"/>
            <exon e_start="98620" e_stop="98783"/>
            <exon e_start="98994" e_stop="99134"/>
            <exon e_start="99878" e_stop="99937"/>
            <exon e_start="101065" e_stop="101229"/>
            <exon e_start="101489" e_stop="101545"/>
            <exon e_start="102620" e_stop="102684"/>
            <exon e_start="103197" e_stop="103320"/>
            <exon e_start="103500" e_stop="103637"/>
            <exon e_start="103751" e_stop="103946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.979" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.579" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.270" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.981" e_score="0.988"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.988" e_score="0.985"/>
          <exon-intron don_prob="0.990" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.931" e_score="0.993"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="96607" e_stop="96733" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96819" e_stop="96939" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.966">
            <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97680" e_stop="97752" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.839">
            <gDNA_intron_boundary i_start="97753" i_stop="97945" i_length="193"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97946" e_stop="98233" e_length="288"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.699">
            <gDNA_intron_boundary i_start="98234" i_stop="98619" i_length="386"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="98620" e_stop="98783" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98784" i_stop="98993" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="98994" e_stop="99134" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.579">
            <gDNA_intron_boundary i_start="99135" i_stop="99877" i_length="743"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99878" e_stop="99937" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.270">
            <gDNA_intron_boundary i_start="99938" i_stop="101064" i_length="1127"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="101065" e_stop="101229" e_length="165"/>
          </exon>
          <intron i_serial="8" don_prob="0.937" acc_prob="0.981">
            <gDNA_intron_boundary i_start="101230" i_stop="101488" i_length="259"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101545" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101546" i_stop="102619" i_length="1074"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="102620" e_stop="102684" e_length="65"/>
          </exon>
          <intron i_serial="10" don_prob="0.872" acc_prob="0.988">
            <gDNA_intron_boundary i_start="102685" i_stop="103196" i_length="512"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="103197" e_stop="103320" e_length="124"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.719">
            <gDNA_intron_boundary i_start="103321" i_stop="103499" i_length="179"/>
          </intron>
          <exon e_serial="12" e_score="0.993">
            <gDNA_exon_boundary e_start="103500" e_stop="103637" e_length="138"/>
          </exon>
          <intron i_serial="12" don_prob="0.834" acc_prob="0.931">
            <gDNA_intron_boundary i_start="103638" i_stop="103750" i_length="113"/>
          </intron>
          <exon e_serial="13" e_score="0.973">
            <gDNA_exon_boundary e_start="103751" e_stop="103946" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96607" stop="96733"/>
              <exon start="96819" stop="96939"/>
              <exon start="97680" stop="97752"/>
              <exon start="97946" stop="98233"/>
              <exon start="98620" stop="98783"/>
              <exon start="98994" stop="99134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98631" stop="98783"/>
              <exon start="98994" stop="99134"/>
              <exon start="99878" stop="99937"/>
              <exon start="101065" stop="101229"/>
              <exon start="101489" stop="101536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98698" stop="98783"/>
              <exon start="98994" stop="99134"/>
              <exon start="99878" stop="99937"/>
              <exon start="101065" stop="101229"/>
              <exon start="101489" stop="101545"/>
              <exon start="102620" stop="102671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101521" stop="101545"/>
              <exon start="102620" stop="102684"/>
              <exon start="103197" stop="103320"/>
              <exon start="103500" stop="103637"/>
              <exon start="103751" stop="103934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103500" stop="103637"/>
              <exon start="103751" stop="103946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103582" stop="103637"/>
              <exon start="103751" stop="103946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368223" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAAT : GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAG : CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG : ACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAG : GTCAAGGAGGTGGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCATGCCAG : ATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACT : ATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAG : AGTAATAGCATATGGTTTCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAATGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAG : GACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAGTATCTCAAAAACAAA : GCCTCTCAAGAAAACTTGGTTGTGGATTATAAAGATTGGCAAATTCCTCTTGGACGCAGGTTCAG : ATCACTGAAGCTGTGGATGGTATTGAGACTCTATGGGCTGGAAAAGCTTCAAGCTTACATAAGAAACCATATAGAACTAGCAAAGCTATTTGAGGAACTTGTTGCTCAAGACAAGAGGTTTGAG : ATTGTCACCCCTCGGAAGTTCTCATTGGTTTGTTTTCGCCTACTTCCACCCCCGAGTAATGAAGATTATGCCAACAAACTGAACCATGACCTGCTAGATTCTGTCAACTCAACTGGAAAACTGTTTATTTCTCACACG : CTTCTTTCAGATAGATACATACTACGCTTTGCAATAGGGGCTCCACTGACAGAAGCGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACGTCATTATTAATTTACCACATTATTGAAATGCAATTTATTTTTGTCTTGTTCTC</gDNA_template>
            <first_frame> R  S  W  *  M  *  R  G  T  L  A  S  S  T  C  P  L  L  C  R  L  P  I  K  N  W  Y  F  I  L  R  H  H  K  A  F  T  Q  S  S  V  K   : W  K  G  D  *  S  R  W  M  Q  S  N  C  E  S  M  V  T  R  W  *  I  S  L  L  I  T  T  K  T  L  R  I  S  P  F  S  V  K  S  S :   L  V  I  S  V  S  F  C  L  K  P  H  L  L  I  L  R  H  C  K  T  F  L  K  :  T  L  M  S  R  M  L  M  R  V  I  W  I  L  M  H  L  I  Q  T  L  K  Q  K  Y  Y  Q  G  *  P  T  G  R  A  Q  I  T  L  H  I  F  L  Q  I  V  V  W  L  D  F  W  G  K  C  S  V  P  G  L  T  W  W  A  L  V  G  *  L  L  Q  Q  R  Q  N  L  K  *  S  F  W  I  G  L  L  K  Y  L  S  C  L  M  N  S  F  Q  Q  :  V  K  E  V  E  *  Y  R  E  Q  Q  V  K  L  F  *  L  *  F  *  L  L  G  I  R  F  *  E  D  S  E  K  M  Q  S  A  N  L  W  S  I  V  L  I  K  L  I  L  L  Y  R  K  H  A  R :   S  E  A  F  I  L  R  T  F  G  C  *  K  Q  T  H  P  G  I  M  L  F  L  L  I  H  F  Q  K  L  Y  H  M  T  W  P  L  V  *  Y  L  S  S  F  V  L  L :   L  V  Q  H  L  Q  L  L  W  I  L  C  S  N  W  E  R  L  P  R :   V  I  A  Y  G  F  M  W  M  R  P  M  L  E  V  H  V  S  V  Q  N  T  G  A  I  *  M  V  S  K  K  L  I  R  S  T  *  M  H  I  N  G  S  *  Q  T  L  T  V  P  L  S  G  S  R :   T  G  V  H  S  S  S  H  C  Q  Q  I  L  S  I  S  K  T  K :   P  L  K  K  T  W  L  W  I  I  K  I  G  K  F  L  L  D  A  G  S   : D  H  *  S  C  G  W  Y  *  D  S  M  G  W  K  S  F  K  L  T  *  E  T  I  *  N  *  Q  S  Y  L  R  N  L  L  L  K  T  R  G  L  R :   L  S  P  L  G  S  S  H  W  F  V  F  A  Y  F  H  P  R  V  M  K  I  M  P  T  N  *  T  M  T  C  *  I  L  S  T  Q  L  E  N  C  L  F  L  T  R :   F  F  Q  I  D  T  Y  Y  A  L  Q  *  G  L  H  *  Q  K  R  G  T  S  L  E  L  G  K  F  Y  K  M  R  L  L  H  C  *  V  N  V  N  I  N  P  L  F  H  V  I  I  N  L  P  H  Y  *  N  A  I  Y  F  C  L  V  L </first_frame>
            <second_frame>  G  V  G  K  C  N  V  G  H  W  R  L  P  L  V  L  C  S  A  V  C  L  S  K  T  G  I  S  F  S  V  T  T  K  L  S  L  R  V  Q  *  N  :  G  R  G  I  E  A  D  G  C  R  A  T  A  R  V  W  S  Q  D  G  R  F  H  C  *  L  L  Q  K  H  *  E  F  P  R  S  Q  S  S  P   : A  W  L  S  P  *  A  F  A  *  N  R  T  C  S  F  *  D  I  A  R  R  S  *  R :   H  *  *  A  G  C  *  C  V  *  F  G  S  *  C  I  *  S  R  R  *  N  K  N  I  T  R  G  D  P  L  A  E  P  R  L  L  C  I  F  S  F  K  *  *  C  G  W  I  S  G  G  N  A  Q  C  R  D  *  H  G  G  L  *  L  D  N  F  S  S  S  D  R  T  *  N  D  R  S  G  L  A  C  *  S  T  *  V  A  *  *  I  P  F  N  R :   S  R  R  W  S  D  T  G  N  S  K  *  S  C  S  S  C  D  F  S  C  *  G  *  G  S  E  K  I  R  K  R  C  N  Q  Q  T  C  G  L  L  F  *  S  N  S  F  F  F  T  E  S  M  P   : D  R  R  H  L  S  *  E  L  S  G  A  E  S  R  P  I  Q  G  L  C  S  F  S  *  Y  T  F  R  S  C  I  T  *  H  G  H  W  F  N  T  F  L  L  L  C  Y   : Y  W  Y  N  I  F  N  C  C  G  S  F  A  R  T  G  K  D  C  Q   : E  *  *  H  M  V  S  C  G  C  G  L  C  W  K  C  M  Y  L  S  R  I  P  G  L  Y  E  W  C  R  R  S  *  F  V  Q  H  E  C  T  *  M  V  P  D  K  L  *  L  F  R  S  L  G  Q   : G  P  E  C  T  H  P  V  T  V  N  K  S  *  V  S  Q  K  Q   : S  L  S  R  K  L  G  C  G  L  *  R  L  A  N  S  S  W  T  Q  V  Q  :  I  T  E  A  V  D  G  I  E  T  L  W  A  G  K  A  S  S  L  H  K  K  P  Y  R  T  S  K  A  I  *  G  T  C  C  S  R  Q  E  V  *   : D  C  H  P  S  E  V  L  I  G  L  F  S  P  T  S  T  P  E  *  *  R  L  C  Q  Q  T  E  P  *  P  A  R  F  C  Q  L  N  W  K  T  V  Y  F  S  H   : A  S  F  R  *  I  H  T  T  L  C  N  R  G  S  T  D  R  S  E  A  H  R  W  S  L  E  S  F  T  R  *  G  C  Y  I  V  K  *  M  L  I  L  I  H  Y  F  T  S  L  L  I  Y  H  I  I  E  M  Q  F  I  F  V  L  F   </second_frame>
            <third_frame>   E  L  V  N  V  T  W  D  I  G  V  F  H  L  S  F  A  L  P  S  A  Y  Q  K  L  V  F  H  S  P  S  P  Q  S  F  H  S  E  F  S  E  M :   E  G  G  L  K  P  M  D  A  E  Q  L  R  E  Y  G  H  K  M  V  D  F  I  A  D  Y  Y  K  N  I  E  N  F  P  V  L  S  Q  V  Q  :  P  G  Y  L  R  K  L  L  P  E  T  A  P  A  H  S  E  T  L  Q  D  V  L  E   : D  I  D  E  Q  D  A  N  A  C  N  L  D  P  D  A  F  D  P  D  V  E  T  K  I  L  P  G  V  T  H  W  Q  S  P  D  Y  F  A  Y  F  P  S  N  S  S  V  A  G  F  L  G  E  M  L  S  A  G  I  N  M  V  G  F  S  W  I  T  S  P  A  A  T  E  L  E  M  I  V  L  D  W  L  A  K  V  L  K  L  P  D  E  F  L  S  T   : G  Q  G  G  G  V  I  Q  G  T  A  S  E  A  V  L  V  V  I  L  A  A  R  D  K  V  L  R  R  F  G  K  D  A  I  S  K  L  V  V  Y  C  S  D  Q  T  H  S  S  L  Q  K  A  C  Q  :  I  G  G  I  Y  P  E  N  F  R  V  L  K  A  D  P  S  R  D  Y  A  L  S  P  D  T  L  S  E  A  V  S  H  D  M  A  T  G  L  I  P  F  F  F  C  A  T  :  I  G  T  T  S  S  T  A  V  D  P  L  L  E  L  G  K  I  A  K  :  S  N  S  I  W  F  H  V  D  A  A  Y  A  G  S  A  C  I  C  P  E  Y  R  G  Y  M  N  G  V  E  E  A  D  S  F  N  M  N  A  H  K  W  F  L  T  N  F  D  C  S  A  L  W  V  K  :  D  R  S  A  L  I  Q  S  L  S  T  N  P  E  Y  L  K  N  K  :  A  S  Q  E  N  L  V  V  D  Y  K  D  W  Q  I  P  L  G  R  R  F  R :   S  L  K  L  W  M  V  L  R  L  Y  G  L  E  K  L  Q  A  Y  I  R  N  H  I  E  L  A  K  L  F  E  E  L  V  A  Q  D  K  R  F  E  :  I  V  T  P  R  K  F  S  L  V  C  F  R  L  L  P  P  P  S  N  E  D  Y  A  N  K  L  N  H  D  L  L  D  S  V  N  S  T  G  K  L  F  I  S  H  T  :  L  L  S  D  R  Y  I  L  R  F  A  I  G  A  P  L  T  E  A  R  H  I  V  G  A  W  K  V  L  Q  D  E  A  A  T  L  L  S  K  C  *  Y  *  S  I  I  S  R  H  Y  *  F  T  T  L  L  K  C  N  L  F  L  S  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96609" stop="96733"/>
                    <exon start="96819" stop="96939"/>
                    <exon start="97680" stop="97752"/>
                    <exon start="97946" stop="98233"/>
                    <exon start="98620" stop="98783"/>
                    <exon start="98994" stop="99134"/>
                    <exon start="99878" stop="99937"/>
                    <exon start="101065" stop="101229"/>
                    <exon start="101489" stop="101545"/>
                    <exon start="102620" stop="102684"/>
                    <exon start="103197" stop="103320"/>
                    <exon start="103500" stop="103637"/>
                    <exon start="103751" stop="103873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELVNVTWDIGVFHLSFALPSAYQKLVFHSPSPQSFHSEFSEMEGGLKPMDAEQLREYGHKMVDFIADYYKNIENFPVLSQVQPGYLRKLLPETAPAHSETLQDVLEDIDEQDANACNLDPDAFDPDVETKILPGVTHWQSPDYFAYFPSNSSVAGFLGEMLSAGINMVGFSWITSPAATELEMIVLDWLAKVLKLPDEFLSTGQGGGVIQGTASEAVLVVILAARDKVLRRFGKDAISKLVVYCSDQTHSSLQKACQIGGIYPENFRVLKADPSRDYALSPDTLSEAVSHDMATGLIPFFFCATIGTTSSTAVDPLLELGKIAKSNSIWFHVDAAYAGSACICPEYRGYMNGVEEADSFNMNAHKWFLTNFDCSALWVKDRSALIQSLSTNPEYLKNKASQENLVVDYKDWQIPLGRRFRSLKLWMVLRLYGLEKLQAYIRNHIELAKLFEELVAQDKRFEIVTPRKFSLVCFRLLPPPSNEDYANKLNHDLLDSVNSTGKLFISHTLLSDRYILRFAIGAPLTEARHIVGAWKVLQDEAATLLSKC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99688" e_stop="99937"/>
            <exon e_start="101065" e_stop="101229"/>
            <exon e_start="101422" e_stop="101545"/>
            <exon e_start="102620" e_stop="102684"/>
            <exon e_start="103197" e_stop="103320"/>
            <exon e_start="103500" e_stop="103637"/>
            <exon e_start="103751" e_stop="103946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.270" e_score="0.984"/>
          <exon-intron don_prob="0.937" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.872" acc_prob="0.988" e_score="0.985"/>
          <exon-intron don_prob="0.990" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.931" e_score="0.993"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="99688" e_stop="99937" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.270">
            <gDNA_intron_boundary i_start="99938" i_stop="101064" i_length="1127"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="101065" e_stop="101229" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101230" i_stop="101421" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="101422" e_stop="101545" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101546" i_stop="102619" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="102620" e_stop="102684" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.872" acc_prob="0.988">
            <gDNA_intron_boundary i_start="102685" i_stop="103196" i_length="512"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103197" e_stop="103320" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.719">
            <gDNA_intron_boundary i_start="103321" i_stop="103499" i_length="179"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="103500" e_stop="103637" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.834" acc_prob="0.931">
            <gDNA_intron_boundary i_start="103638" i_stop="103750" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="103751" e_stop="103946" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99688" stop="99937"/>
              <exon start="101065" stop="101229"/>
              <exon start="101422" stop="101545"/>
              <exon start="102620" stop="102649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101521" stop="101545"/>
              <exon start="102620" stop="102684"/>
              <exon start="103197" stop="103320"/>
              <exon start="103500" stop="103637"/>
              <exon start="103751" stop="103934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103500" stop="103637"/>
              <exon start="103751" stop="103946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103582" stop="103637"/>
              <exon start="103751" stop="103946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368223" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCCAGTATATTAGTTTAAAGCTTTAGATGCAAATTGTTGGTAATCAATGTTTGTTGTAAGTTTGGTATATAATGAAATGGATGCCACCTTCCGATGCTTTCTCACATCTCGTTTGCTTACTTTTGACGTGTAATTTCCTTGCTGTGCATTCTAAATTGCTTAAGCAATCTTTTGCAATTCATGCACAGATTGGTACAACATCTTCAACTGCTGTGGATCCTTTGCTCGAACTGGGAAAGATTGCCAAG : AGTAATAGCATATGGTTTCATGTGGATGCGGCCTATGCTGGAAGTGCATGTATCTGTCCAGAATACCGGGGCTATATGAATGGTGTCGAAGAAGCTGATTCGTTCAACATGAATGCACATAAATGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAG : ACACAAGAGCTAACATGAATTTATATTGTTTGGAAAACTGGAATTTATGGCATTTGCATCTGAACAGGACCGGAGTGCACTCATCCAGTCACTGTCAACAAATCCTGAGTATCTCAAAAACAAA : GCCTCTCAAGAAAACTTGGTTGTGGATTATAAAGATTGGCAAATTCCTCTTGGACGCAGGTTCAG : ATCACTGAAGCTGTGGATGGTATTGAGACTCTATGGGCTGGAAAAGCTTCAAGCTTACATAAGAAACCATATAGAACTAGCAAAGCTATTTGAGGAACTTGTTGCTCAAGACAAGAGGTTTGAG : ATTGTCACCCCTCGGAAGTTCTCATTGGTTTGTTTTCGCCTACTTCCACCCCCGAGTAATGAAGATTATGCCAACAAACTGAACCATGACCTGCTAGATTCTGTCAACTCAACTGGAAAACTGTTTATTTCTCACACG : CTTCTTTCAGATAGATACATACTACGCTTTGCAATAGGGGCTCCACTGACAGAAGCGAGGCACATCGTTGGAGCTTGGAAAGTTTTACAAGATGAGGCTGCTACATTGTTAAGTAAATGTTAATATTAATCCATTATTTCACGTCATTATTAATTTACCACATTATTGAAATGCAATTTATTTTTGTCTTGTTCTC</gDNA_template>
            <first_frame> A  P  V  Y  *  F  K  A  L  D  A  N  C  W  *  S  M  F  V  V  S  L  V  Y  N  E  M  D  A  T  F  R  C  F  L  T  S  R  L  L  T  F  D  V  *  F  P  C  C  A  F  *  I  A  *  A  I  F  C  N  S  C  T  D  W  Y  N  I  F  N  C  C  G  S  F  A  R  T  G  K  D  C  Q   : E  *  *  H  M  V  S  C  G  C  G  L  C  W  K  C  M  Y  L  S  R  I  P  G  L  Y  E  W  C  R  R  S  *  F  V  Q  H  E  C  T  *  M  V  P  D  K  L  *  L  F  R  S  L  G  Q   : D  T  R  A  N  M  N  L  Y  C  L  E  N  W  N  L  W  H  L  H  L  N  R  T  G  V  H  S  S  S  H  C  Q  Q  I  L  S  I  S  K  T  K :   P  L  K  K  T  W  L  W  I  I  K  I  G  K  F  L  L  D  A  G  S   : D  H  *  S  C  G  W  Y  *  D  S  M  G  W  K  S  F  K  L  T  *  E  T  I  *  N  *  Q  S  Y  L  R  N  L  L  L  K  T  R  G  L  R :   L  S  P  L  G  S  S  H  W  F  V  F  A  Y  F  H  P  R  V  M  K  I  M  P  T  N  *  T  M  T  C  *  I  L  S  T  Q  L  E  N  C  L  F  L  T  R :   F  F  Q  I  D  T  Y  Y  A  L  Q  *  G  L  H  *  Q  K  R  G  T  S  L  E  L  G  K  F  Y  K  M  R  L  L  H  C  *  V  N  V  N  I  N  P  L  F  H  V  I  I  N  L  P  H  Y  *  N  A  I  Y  F  C  L  V  L </first_frame>
            <second_frame>  L  Q  Y  I  S  L  K  L  *  M  Q  I  V  G  N  Q  C  L  L  *  V  W  Y  I  M  K  W  M  P  P  S  D  A  F  S  H  L  V  C  L  L  L  T  C  N  F  L  A  V  H  S  K  L  L  K  Q  S  F  A  I  H  A  Q  I  G  T  T  S  S  T  A  V  D  P  L  L  E  L  G  K  I  A  K  :  S  N  S  I  W  F  H  V  D  A  A  Y  A  G  S  A  C  I  C  P  E  Y  R  G  Y  M  N  G  V  E  E  A  D  S  F  N  M  N  A  H  K  W  F  L  T  N  F  D  C  S  A  L  W  V  K  :  T  Q  E  L  T  *  I  Y  I  V  W  K  T  G  I  Y  G  I  C  I  *  T  G  P  E  C  T  H  P  V  T  V  N  K  S  *  V  S  Q  K  Q   : S  L  S  R  K  L  G  C  G  L  *  R  L  A  N  S  S  W  T  Q  V  Q  :  I  T  E  A  V  D  G  I  E  T  L  W  A  G  K  A  S  S  L  H  K  K  P  Y  R  T  S  K  A  I  *  G  T  C  C  S  R  Q  E  V  *   : D  C  H  P  S  E  V  L  I  G  L  F  S  P  T  S  T  P  E  *  *  R  L  C  Q  Q  T  E  P  *  P  A  R  F  C  Q  L  N  W  K  T  V  Y  F  S  H   : A  S  F  R  *  I  H  T  T  L  C  N  R  G  S  T  D  R  S  E  A  H  R  W  S  L  E  S  F  T  R  *  G  C  Y  I  V  K  *  M  L  I  L  I  H  Y  F  T  S  L  L  I  Y  H  I  I  E  M  Q  F  I  F  V  L  F   </second_frame>
            <third_frame>   S  S  I  L  V  *  S  F  R  C  K  L  L  V  I  N  V  C  C  K  F  G  I  *  *  N  G  C  H  L  P  M  L  S  H  I  S  F  A  Y  F  *  R  V  I  S  L  L  C  I  L  N  C  L  S  N  L  L  Q  F  M  H  R  L  V  Q  H  L  Q  L  L  W  I  L  C  S  N  W  E  R  L  P  R :   V  I  A  Y  G  F  M  W  M  R  P  M  L  E  V  H  V  S  V  Q  N  T  G  A  I  *  M  V  S  K  K  L  I  R  S  T  *  M  H  I  N  G  S  *  Q  T  L  T  V  P  L  S  G  S  R :   H  K  S  *  H  E  F  I  L  F  G  K  L  E  F  M  A  F  A  S  E  Q  D  R  S  A  L  I  Q  S  L  S  T  N  P  E  Y  L  K  N  K  :  A  S  Q  E  N  L  V  V  D  Y  K  D  W  Q  I  P  L  G  R  R  F  R :   S  L  K  L  W  M  V  L  R  L  Y  G  L  E  K  L  Q  A  Y  I  R  N  H  I  E  L  A  K  L  F  E  E  L  V  A  Q  D  K  R  F  E  :  I  V  T  P  R  K  F  S  L  V  C  F  R  L  L  P  P  P  S  N  E  D  Y  A  N  K  L  N  H  D  L  L  D  S  V  N  S  T  G  K  L  F  I  S  H  T  :  L  L  S  D  R  Y  I  L  R  F  A  I  G  A  P  L  T  E  A  R  H  I  V  G  A  W  K  V  L  Q  D  E  A  A  T  L  L  S  K  C  *  Y  *  S  I  I  S  R  H  Y  *  F  T  T  L  L  K  C  N  L  F  L  S  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101435" stop="101545"/>
                    <exon start="102620" stop="102684"/>
                    <exon start="103197" stop="103320"/>
                    <exon start="103500" stop="103637"/>
                    <exon start="103751" stop="103873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEFILFGKLEFMAFASEQDRSALIQSLSTNPEYLKNKASQENLVVDYKDWQIPLGRRFRSLKLWMVLRLYGLEKLQAYIRNHIELAKLFEELVAQDKRFEIVTPRKFSLVCFRLLPPPSNEDYANKLNHDLLDSVNSTGKLFISHTLLSDRYILRFAIGAPLTEARHIVGAWKVLQDEAATLLSKC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99749" stop="99937"/>
                    <exon start="101065" stop="101229"/>
                    <exon start="101422" stop="101439"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWYIMKWMPPSDAFSHLVCLLLTCNFLAVHSKLLKQSFAIHAQIGTTSSTAVDPLLELGKIAKSNSIWFHVDAAYAGSACICPEYRGYMNGVEEADSFNMNAHKWFLTNFDCSALWVKTQELT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96615" e_stop="96733"/>
            <exon e_start="96819" e_stop="96939"/>
            <exon e_start="97680" e_stop="97752"/>
            <exon e_start="98003" e_stop="98233"/>
            <exon e_start="98439" e_stop="98540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.924"/>
          <exon-intron don_prob="0.979" acc_prob="0.966" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="96615" e_stop="96733" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="96819" e_stop="96939" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.966">
            <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97680" e_stop="97752" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97753" i_stop="98002" i_length="250"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="98003" e_stop="98233" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98234" i_stop="98438" i_length="205"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="98439" e_stop="98540" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96615" stop="96733"/>
              <exon start="96819" stop="96939"/>
              <exon start="97680" stop="97752"/>
              <exon start="98003" stop="98215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96617" stop="96733"/>
              <exon start="96819" stop="96939"/>
              <exon start="97680" stop="97752"/>
              <exon start="98003" stop="98186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96622" stop="96733"/>
              <exon start="96819" stop="96939"/>
              <exon start="97680" stop="97752"/>
              <exon start="98003" stop="98233"/>
              <exon start="98439" stop="98540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAAT : GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAG : CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG : ACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAG : GTTGTGTACTAAATTTTGTGCAAGTTAAGCAAAAAGTCGGGAGAGAGAAGATAGAACCATATGTTTATAAGCTGATTGAAAGATTGAAGATCACTTAAATAT</gDNA_template>
            <first_frame> V  N  V  T  W  D  I  G  V  F  H  L  S  F  A  L  P  S  A  Y  Q  K  L  V  F  H  S  P  S  P  Q  S  F  H  S  E  F  S  E  M :   E  G  G  L  K  P  M  D  A  E  Q  L  R  E  Y  G  H  K  M  V  D  F  I  A  D  Y  Y  K  N  I  E  N  F  P  V  L  S  Q  V  Q  :  P  G  Y  L  R  K  L  L  P  E  T  A  P  A  H  S  E  T  L  Q  D  V  L  E   : D  V  E  T  K  I  L  P  G  V  T  H  W  Q  S  P  D  Y  F  A  Y  F  P  S  N  S  S  V  A  G  F  L  G  E  M  L  S  A  G  I  N  M  V  G  F  S  W  I  T  S  P  A  A  T  E  L  E  M  I  V  L  D  W  L  A  K  V  L  K  L  P  D  E  F  L  S  T   : G  C  V  L  N  F  V  Q  V  K  Q  K  V  G  R  E  K  I  E  P  Y  V  Y  K  L  I  E  R  L  K  I  T  *  I  </first_frame>
            <second_frame>  *  M  *  R  G  T  L  A  S  S  T  C  P  L  L  C  R  L  P  I  K  N  W  Y  F  I  L  R  H  H  K  A  F  T  Q  S  S  V  K   : W  K  G  D  *  S  R  W  M  Q  S  N  C  E  S  M  V  T  R  W  *  I  S  L  L  I  T  T  K  T  L  R  I  S  P  F  S  V  K  S  S :   L  V  I  S  V  S  F  C  L  K  P  H  L  L  I  L  R  H  C  K  T  F  L  K  :  T  L  K  Q  K  Y  Y  Q  G  *  P  T  G  R  A  Q  I  T  L  H  I  F  L  Q  I  V  V  W  L  D  F  W  G  K  C  S  V  P  G  L  T  W  W  A  L  V  G  *  L  L  Q  Q  R  Q  N  L  K  *  S  F  W  I  G  L  L  K  Y  L  S  C  L  M  N  S  F  Q  Q  :  V  V  Y  *  I  L  C  K  L  S  K  K  S  G  E  R  R  *  N  H  M  F  I  S  *  L  K  D  *  R  S  L  K  Y </second_frame>
            <third_frame>   K  C  N  V  G  H  W  R  L  P  L  V  L  C  S  A  V  C  L  S  K  T  G  I  S  F  S  V  T  T  K  L  S  L  R  V  Q  *  N  :  G  R  G  I  E  A  D  G  C  R  A  T  A  R  V  W  S  Q  D  G  R  F  H  C  *  L  L  Q  K  H  *  E  F  P  R  S  Q  S  S  P   : A  W  L  S  P  *  A  F  A  *  N  R  T  C  S  F  *  D  I  A  R  R  S  *  R :   R  *  N  K  N  I  T  R  G  D  P  L  A  E  P  R  L  L  C  I  F  S  F  K  *  *  C  G  W  I  S  G  G  N  A  Q  C  R  D  *  H  G  G  L  *  L  D  N  F  S  S  S  D  R  T  *  N  D  R  S  G  L  A  C  *  S  T  *  V  A  *  *  I  P  F  N  R :   L  C  T  K  F  C  A  S  *  A  K  S  R  E  R  E  D  R  T  I  C  L  *  A  D  *  K  I  E  D  H  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96615" stop="96733"/>
                    <exon start="96819" stop="96939"/>
                    <exon start="97680" stop="97752"/>
                    <exon start="98003" stop="98233"/>
                    <exon start="98439" stop="98536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNVTWDIGVFHLSFALPSAYQKLVFHSPSPQSFHSEFSEMEGGLKPMDAEQLREYGHKMVDFIADYYKNIENFPVLSQVQPGYLRKLLPETAPAHSETLQDVLEDVETKILPGVTHWQSPDYFAYFPSNSSVAGFLGEMLSAGINMVGFSWITSPAATELEMIVLDWLAKVLKLPDEFLSTGCVLNFVQVKQKVGREKIEPYVYKLIERLKIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="96607" e_stop="96733"/>
            <exon e_start="96819" e_stop="96939"/>
            <exon e_start="97680" e_stop="97752"/>
            <exon e_start="97946" e_stop="98233"/>
            <exon e_start="98620" e_stop="98783"/>
            <exon e_start="98994" e_stop="99361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.979" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="0.994"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="96607" e_stop="96733" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96819" e_stop="96939" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.966">
            <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97680" e_stop="97752" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.839">
            <gDNA_intron_boundary i_start="97753" i_stop="97945" i_length="193"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97946" e_stop="98233" e_length="288"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.699">
            <gDNA_intron_boundary i_start="98234" i_stop="98619" i_length="386"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="98620" e_stop="98783" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98784" i_stop="98993" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="98994" e_stop="99361" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96607" stop="96733"/>
              <exon start="96819" stop="96939"/>
              <exon start="97680" stop="97752"/>
              <exon start="97946" stop="98233"/>
              <exon start="98620" stop="98783"/>
              <exon start="98994" stop="99134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98631" stop="98783"/>
              <exon start="98994" stop="99361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAAT : GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAG : CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG : ACATTGATGAGCAGGATGCTAATGCGTGTAATTTGGATCCTGATGCATTTGATCCAGACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATATTTTCCTTCAAATAGTAGTGTGGCTGGATTTCTGGGGGAAATGCTCAGTGCCGGGATTAACATGGTGGGCTTTAGTTGGATAACTTCTCCAGCAGCGACAGAACTTGAAATGATCGTTCTGGATTGGCTTGCTAAAGTACTTAAGTTGCCTGATGAATTCCTTTCAACAG : GTCAAGGAGGTGGAGTGATACAGGGAACAGCAAGTGAAGCTGTTCTAGTTGTGATTTTAGCTGCTAGGGATAAGGTTCTGAGAAGATTCGGAAAAGATGCAATCAGCAAACTTGTGGTCTATTGTTCTGATCAAACTCATTCTTCTTTACAGAAAGCATGCCAG : ATCGGAGGCATTTATCCTGAGAACTTTCGGGTGCTGAAAGCAGACCCATCCAGGGATTATGCTCTTTCTCCTGATACACTTTCAGAAGCTGTATCACATGACATGGCCACTGGTTTAATACCTTTCTTCTTTTGTGCTACTGTAAGGGAAATAGGAAAAGAAGAAACCATGTTCATCTTGCCAAACCGTATCTTTCAATGTATTAGCAAGAGAACTATTTTTTGGTTTTACTTTTTAGGTCTCTCTCATTTCGGGTAAGATATTGCATAGTCCTTAGGTCTCTCTCATTGACAAGATAAGTTACTGCTAATTCCTGTTCTAGAAAGATTAAGTAGATCATTAATTTAGTATGTCATATTGTGATTACT</gDNA_template>
            <first_frame> R  S  W  *  M  *  R  G  T  L  A  S  S  T  C  P  L  L  C  R  L  P  I  K  N  W  Y  F  I  L  R  H  H  K  A  F  T  Q  S  S  V  K   : W  K  G  D  *  S  R  W  M  Q  S  N  C  E  S  M  V  T  R  W  *  I  S  L  L  I  T  T  K  T  L  R  I  S  P  F  S  V  K  S  S :   L  V  I  S  V  S  F  C  L  K  P  H  L  L  I  L  R  H  C  K  T  F  L  K  :  T  L  M  S  R  M  L  M  R  V  I  W  I  L  M  H  L  I  Q  T  L  K  Q  K  Y  Y  Q  G  *  P  T  G  R  A  Q  I  T  L  H  I  F  L  Q  I  V  V  W  L  D  F  W  G  K  C  S  V  P  G  L  T  W  W  A  L  V  G  *  L  L  Q  Q  R  Q  N  L  K  *  S  F  W  I  G  L  L  K  Y  L  S  C  L  M  N  S  F  Q  Q  :  V  K  E  V  E  *  Y  R  E  Q  Q  V  K  L  F  *  L  *  F  *  L  L  G  I  R  F  *  E  D  S  E  K  M  Q  S  A  N  L  W  S  I  V  L  I  K  L  I  L  L  Y  R  K  H  A  R :   S  E  A  F  I  L  R  T  F  G  C  *  K  Q  T  H  P  G  I  M  L  F  L  L  I  H  F  Q  K  L  Y  H  M  T  W  P  L  V  *  Y  L  S  S  F  V  L  L  *  G  K  *  E  K  K  K  P  C  S  S  C  Q  T  V  S  F  N  V  L  A  R  E  L  F  F  G  F  T  F  *  V  S  L  I  S  G  K  I  L  H  S  P  *  V  S  L  I  D  K  I  S  Y  C  *  F  L  F  *  K  D  *  V  D  H  *  F  S  M  S  Y  C  D  Y  </first_frame>
            <second_frame>  G  V  G  K  C  N  V  G  H  W  R  L  P  L  V  L  C  S  A  V  C  L  S  K  T  G  I  S  F  S  V  T  T  K  L  S  L  R  V  Q  *  N  :  G  R  G  I  E  A  D  G  C  R  A  T  A  R  V  W  S  Q  D  G  R  F  H  C  *  L  L  Q  K  H  *  E  F  P  R  S  Q  S  S  P   : A  W  L  S  P  *  A  F  A  *  N  R  T  C  S  F  *  D  I  A  R  R  S  *  R :   H  *  *  A  G  C  *  C  V  *  F  G  S  *  C  I  *  S  R  R  *  N  K  N  I  T  R  G  D  P  L  A  E  P  R  L  L  C  I  F  S  F  K  *  *  C  G  W  I  S  G  G  N  A  Q  C  R  D  *  H  G  G  L  *  L  D  N  F  S  S  S  D  R  T  *  N  D  R  S  G  L  A  C  *  S  T  *  V  A  *  *  I  P  F  N  R :   S  R  R  W  S  D  T  G  N  S  K  *  S  C  S  S  C  D  F  S  C  *  G  *  G  S  E  K  I  R  K  R  C  N  Q  Q  T  C  G  L  L  F  *  S  N  S  F  F  F  T  E  S  M  P   : D  R  R  H  L  S  *  E  L  S  G  A  E  S  R  P  I  Q  G  L  C  S  F  S  *  Y  T  F  R  S  C  I  T  *  H  G  H  W  F  N  T  F  L  L  L  C  Y  C  K  G  N  R  K  R  R  N  H  V  H  L  A  K  P  Y  L  S  M  Y  *  Q  E  N  Y  F  L  V  L  L  F  R  S  L  S  F  R  V  R  Y  C  I  V  L  R  S  L  S  L  T  R  *  V  T  A  N  S  C  S  R  K  I  K  *  I  I  N  L  V  C  H  I  V  I  T </second_frame>
            <third_frame>   E  L  V  N  V  T  W  D  I  G  V  F  H  L  S  F  A  L  P  S  A  Y  Q  K  L  V  F  H  S  P  S  P  Q  S  F  H  S  E  F  S  E  M :   E  G  G  L  K  P  M  D  A  E  Q  L  R  E  Y  G  H  K  M  V  D  F  I  A  D  Y  Y  K  N  I  E  N  F  P  V  L  S  Q  V  Q  :  P  G  Y  L  R  K  L  L  P  E  T  A  P  A  H  S  E  T  L  Q  D  V  L  E   : D  I  D  E  Q  D  A  N  A  C  N  L  D  P  D  A  F  D  P  D  V  E  T  K  I  L  P  G  V  T  H  W  Q  S  P  D  Y  F  A  Y  F  P  S  N  S  S  V  A  G  F  L  G  E  M  L  S  A  G  I  N  M  V  G  F  S  W  I  T  S  P  A  A  T  E  L  E  M  I  V  L  D  W  L  A  K  V  L  K  L  P  D  E  F  L  S  T   : G  Q  G  G  G  V  I  Q  G  T  A  S  E  A  V  L  V  V  I  L  A  A  R  D  K  V  L  R  R  F  G  K  D  A  I  S  K  L  V  V  Y  C  S  D  Q  T  H  S  S  L  Q  K  A  C  Q  :  I  G  G  I  Y  P  E  N  F  R  V  L  K  A  D  P  S  R  D  Y  A  L  S  P  D  T  L  S  E  A  V  S  H  D  M  A  T  G  L  I  P  F  F  F  C  A  T  V  R  E  I  G  K  E  E  T  M  F  I  L  P  N  R  I  F  Q  C  I  S  K  R  T  I  F  W  F  Y  F  L  G  L  S  H  F  G  *  D  I  A  *  S  L  G  L  S  H  *  Q  D  K  L  L  L  I  P  V  L  E  R  L  S  R  S  L  I  *  Y  V  I  L  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96609" stop="96733"/>
                    <exon start="96819" stop="96939"/>
                    <exon start="97680" stop="97752"/>
                    <exon start="97946" stop="98233"/>
                    <exon start="98620" stop="98783"/>
                    <exon start="98994" stop="99251"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELVNVTWDIGVFHLSFALPSAYQKLVFHSPSPQSFHSEFSEMEGGLKPMDAEQLREYGHKMVDFIADYYKNIENFPVLSQVQPGYLRKLLPETAPAHSETLQDVLEDIDEQDANACNLDPDAFDPDVETKILPGVTHWQSPDYFAYFPSNSSVAGFLGEMLSAGINMVGFSWITSPAATELEMIVLDWLAKVLKLPDEFLSTGQGGGVIQGTASEAVLVVILAARDKVLRRFGKDAISKLVVYCSDQTHSSLQKACQIGGIYPENFRVLKADPSRDYALSPDTLSEAVSHDMATGLIPFFFCATVREIGKEETMFILPNRIFQCISKRTIFWFYFLGLSHFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="96605" e_stop="96733"/>
            <exon e_start="96819" e_stop="96939"/>
            <exon e_start="97680" e_stop="97752"/>
            <exon e_start="98002" e_stop="98064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="0.891"/>
          <exon-intron don_prob="0.979" acc_prob="0.966" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="96605" e_stop="96733" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96734" i_stop="96818" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="96819" e_stop="96939" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.966">
            <gDNA_intron_boundary i_start="96940" i_stop="97679" i_length="740"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97680" e_stop="97752" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97753" i_stop="98001" i_length="249"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="98002" e_stop="98064" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96605" stop="96733"/>
              <exon start="96819" stop="96939"/>
              <exon start="97680" stop="97752"/>
              <exon start="98002" stop="98064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279085" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGAGTTGGTAAATGTAACGTGGGACATTGGCGTCTTCCACTTGTCCTTTGCTCTGCCGTCTGCCTATCAAAAACTGGTATTTCATTCTCCGTCACCACAAAGCTTTCACTCAGAGTTCAGTGAAAT : GGAAGGGGGATTGAAGCCGATGGATGCAGAGCAACTGCGAGAGTATGGTCACAAGATGGTAGATTTCATTGCTGATTACTACAAAAACATTGAGAATTTCCCCGTTCTCAGTCAAGTCCAG : CCTGGTTATCTCCGTAAGCTTTTGCCTGAAACCGCACCTGCTCATTCTGAGACATTGCAAGACGTTCTTGAAG : GACGTTGAAACAAAAATATTACCAGGGGTGACCCACTGGCAGAGCCCAGATTACTTTGCATAT</gDNA_template>
            <first_frame> R  G  V  G  K  C  N  V  G  H  W  R  L  P  L  V  L  C  S  A  V  C  L  S  K  T  G  I  S  F  S  V  T  T  K  L  S  L  R  V  Q  *  N  :  G  R  G  I  E  A  D  G  C  R  A  T  A  R  V  W  S  Q  D  G  R  F  H  C  *  L  L  Q  K  H  *  E  F  P  R  S  Q  S  S  P   : A  W  L  S  P  *  A  F  A  *  N  R  T  C  S  F  *  D  I  A  R  R  S  *  R :   T  L  K  Q  K  Y  Y  Q  G  *  P  T  G  R  A  Q  I  T  L  H   </first_frame>
            <second_frame>  E  E  L  V  N  V  T  W  D  I  G  V  F  H  L  S  F  A  L  P  S  A  Y  Q  K  L  V  F  H  S  P  S  P  Q  S  F  H  S  E  F  S  E  M :   E  G  G  L  K  P  M  D  A  E  Q  L  R  E  Y  G  H  K  M  V  D  F  I  A  D  Y  Y  K  N  I  E  N  F  P  V  L  S  Q  V  Q  :  P  G  Y  L  R  K  L  L  P  E  T  A  P  A  H  S  E  T  L  Q  D  V  L  E   : G  R  *  N  K  N  I  T  R  G  D  P  L  A  E  P  R  L  L  C  I  </second_frame>
            <third_frame>   R  S  W  *  M  *  R  G  T  L  A  S  S  T  C  P  L  L  C  R  L  P  I  K  N  W  Y  F  I  L  R  H  H  K  A  F  T  Q  S  S  V  K   : W  K  G  D  *  S  R  W  M  Q  S  N  C  E  S  M  V  T  R  W  *  I  S  L  L  I  T  T  K  T  L  R  I  S  P  F  S  V  K  S  S :   L  V  I  S  V  S  F  C  L  K  P  H  L  L  I  L  R  H  C  K  T  F  L  K  :  D  V  E  T  K  I  L  P  G  V  T  H  W  Q  S  P  D  Y  F  A  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96606" stop="96733"/>
                    <exon start="96819" stop="96939"/>
                    <exon start="97680" stop="97752"/>
                    <exon start="98002" stop="98009"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELVNVTWDIGVFHLSFALPSAYQKLVFHSPSPQSFHSEFSEMEGGLKPMDAEQLREYGHKMVDFIADYYKNIENFPVLSQVQPGYLRKLLPETAPAHSETLQDVLEGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="106035" PGL_stop="105311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106035" e_stop="106011"/>
            <exon e_start="105764" e_stop="105311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.920"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="106035" e_stop="106011" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106010" i_stop="105765" i_length="246"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="105764" e_stop="105311" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106035" stop="106011"/>
              <exon start="105764" stop="105552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106034" stop="106011"/>
              <exon start="105764" stop="105311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAAACCGACACGTAGATTTAGG : GGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATTTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCTACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  Q  T  D  T  *  I  *   : G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  I  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  K  P  T  R  R  F  R  :  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  F  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  L  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G :   D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  F  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  Y  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105526" stop="105311"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAVIFYSTVTLASLHYSGYQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="106437" PGL_stop="107045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106437" e_stop="106797"/>
            <exon e_start="106849" e_stop="107045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="106437" e_stop="106797" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106798" i_stop="106848" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="106849" e_stop="107045" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106437" stop="106797"/>
              <exon start="106849" stop="107042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106437" stop="106797"/>
              <exon start="106849" stop="106940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106438" stop="106797"/>
              <exon start="106849" stop="107045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106438" stop="106797"/>
              <exon start="106849" stop="107032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106438" stop="106797"/>
              <exon start="106849" stop="106959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGATTCTCCCTCTTTCTCTTTGTTCTTTCTATTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATGAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCATCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTTTGTGACGGTCCGTCACGCCTGTGACG : GTCCGTCCTGTCATTCCGTCACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTTACCATGACGGTCCGTCGTGGGGTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATATGTTGCTCAAAACGACTAAACAGGTCGTTACAATA</gDNA_template>
            <first_frame> F  D  S  P  S  F  S  L  F  F  L  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  M  K  D  G  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  L  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  F  V  T  V  R  H  A  C  D   : G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  L  R  R  S  V  V  T  M  T  V  R  R  G  V  R  R  L  S  L  F  F  Q  K  *  N  M  L  L  K  T  T  K  Q  V  V  T  I </first_frame>
            <second_frame>  S  I  L  P  L  S  L  C  S  F  Y  F  L  I  Q  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  A  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  P  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  A  H  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  :  V  R  P  V  I  P  S  R  S  S  E  S  Q  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  C  D  G  L  S  L  P  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  Q   </second_frame>
            <third_frame>   R  F  S  L  F  L  F  V  L  S  I  F  L  F  K  P  S  F  F  Y  P  N  *  Y  I  I  K  N  E  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  L  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  P  I  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  L  *  R :   S  V  L  S  F  R  H  E  V  Q  R  V  N  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  A  T  V  C  R  Y  H  D  G  P  S  W  G  P  S  S  Q  P  V  F  P  E  I  K  Y  V  A  Q  N  D  *  T  G  R  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106623" stop="106797"/>
                    <exon start="106849" stop="106916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPDWDYATCDGPSCLRRSVLQVVARFRDSISTKEFVTVRHACDGPSCHSVTKFRESIFSTQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="107701" PGL_stop="107877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107701" e_stop="107877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="107701" e_stop="107877" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107701" stop="107877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="109182" PGL_stop="110532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109182" e_stop="110532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="109182" e_stop="110532" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109253" stop="109932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109702" stop="110360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109771" stop="110532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109771" stop="110431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110174" stop="110504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCATCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCTGGTTCAAGATAAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCATCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAAATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAATCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTTAGACCATTAGCAAATAAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAAAAGCCATGCGATCACAAACCAGAAGATTACCTGTGATGACAACATCAGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  F  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  I  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  A  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  W  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  N  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  N  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  K  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  F  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  R  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  S  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  *  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  I  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  F  R  P  L  A  N  K  E  D  T  *  E  N  V  D  P  G  S  N  N  T  K  A  M  R  S  Q  T  R  R  L  P  V  M  T  T  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  E  T  H  T  *  R  T  W  H  K  V  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  C  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  L  V  Q  D  K  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  S  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  K  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  S  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  L  D  H  *  Q  I  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  D  H  K  P  E  D  Y  L  *  *  Q  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109347" stop="109685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKFFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109948" stop="110154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQKSISLSGGIPGRSAGNTSRNSRTIETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="111158" PGL_stop="109754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111158" e_stop="110986"/>
            <exon e_start="110281" e_stop="109754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="111158" e_stop="110986" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110985" i_stop="110282" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="110281" e_stop="109754" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111158" stop="110986"/>
              <exon start="110281" stop="109754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGATCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAATCCACAAGATCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGATTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATTTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGATGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTTATCTTGAACCAGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  D  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  S  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  D  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  F  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  D  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  L  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  N  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  I  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  N  P  Q  D  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  I  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  M  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  Y  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  I  H  K  I  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  F  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  F  I  L  N  Q  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111157" stop="110986"/>
                    <exon start="110281" stop="109755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSINAYEAKFRALSRYATQLCFNPQDRIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWISPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSMVREFLDVFPADLPGMPPDRDIDFCIYLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="111786" PGL_stop="111233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111786" e_stop="111233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="111786" e_stop="111233" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111786" stop="111233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTATGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCATCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATCGGACATAGGCACGTTTCCACGTCTGCCTACTGGGGCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAACGTGGTGGCGGTCACATGCTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  Y  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  I  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  A  Y  W  G  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  A  M  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  S  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  S  D  I  G  T  F  P  R  L  P  T  G  A  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  T  W  W  R  S  H  A  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  M  L  W  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  R  T  *  A  R  F  H  V  C  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  R  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111785" stop="111234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDAMAVTPPPTEEVVREGEEGENEQVQNEELPSQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASSDIGTFPRLPTGAIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKTWWRSHAECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="111421" PGL_stop="111853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111421" e_stop="111853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="111421" e_stop="111853" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111421" stop="111853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGCCCCAGTAGGCAGACGTGGAAACGTGCCTATGTCCGATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGATGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTCACCCTCTCTTACTACTTCCTCAGTCGGTGGAGGAGTCACCGCCATAGCATCAGATGGGCTAGGTGCTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGTTTTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  A  P  V  G  R  R  G  N  V  P  M  S  D  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  D  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  I  A  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  V  F  </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  P  Q  *  A  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  M  A  I  P  H  F  A  L  V  H  S  P  L  P  H  P  L  L  L  L  P  Q  S  V  E  E  S  P  P  *  H  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  F  F </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  S  P  S  R  Q  T  W  K  R  A  Y  V  R  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  Y  F  L  S  R  W  R  S  H  R  H  S  I  R  W  A  R  C  L  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111576" stop="111851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQFLILHLFILPFLTLSYYFLSRWRSHRHSIRWARCLSSSSRGRPPTTSTTASCRCF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111655" stop="111852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWDGNSSFCTCSFSPSSPSLTTSSVGGGVTAIASDGLGACPLPLEDVLPRPLPRPLAVVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="116887" PGL_stop="111860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116887" e_stop="116561"/>
            <exon e_start="112319" e_stop="111860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="116887" e_stop="116561" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="116560" i_stop="112320" i_length="4241"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="112319" e_stop="111860" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116887" stop="116561"/>
              <exon start="112319" stop="111918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116887" stop="116561"/>
              <exon start="112319" stop="111993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116887" stop="116561"/>
              <exon start="112319" stop="112068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112145" stop="111860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTCAGTAATTTGAAGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGA : ATAATAGTAATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  A  D  D  I  Y  S  V  P  M  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  S  V  I  *  S  R  C  S  C  G  D  D  F  Q  I  L  G  N  N  S  Y  *  :  I  I  V  I  E  L  V  F  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  S  D  L  G  R  D  K  L  G  I  R  A  L  C  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  D  I  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  Q  *  F  E  V  D  V  L  V  V  M  T  S  R  F  W  E  I  I  V  I  E :   *  *  *  L  N  W  F  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  E  G  *  V  W  V  P  V  A  A  P  I  W  V  V  T  N  L  V  S  E  H  Y  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  C  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  Q  G  R  I  *  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   G  R  *  Y  L  L  S  T  H  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  *  M  F  L  W  *  *  L  P  D  F  G  K  *  *  L  L   : N  N  S  N  *  I  G  F  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  K  G  K  C  G  C  Q  S  R  L  R  F  G  S  *  Q  T  W  Y  Q  S  I  M  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  V  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  K  A  G  Y  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116886" stop="116647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPMISTQYPCFVLTPTFMFSSCLFVECSKRAVIFDSTVTLASLHYSGYQGELMLLAWTGSSSSCLDALKFRHGLAFMYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112096" stop="111884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFCLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQQGRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113502" e_stop="112781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="113502" e_stop="112781" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113502" stop="112781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113502" stop="113098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGCAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTGTGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGGCACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCGGGTGTCACAAATCGACACGTAGATTTGGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTTACGAACCGACACATAGATTTAGAGGATCGAGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCATGTTCTGACACACAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGGTTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  C  K  K  E  G  L  M  N  *  *  K  E  I  *  G  I  G  C  H  E  P  A  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  C  H  K  S  T  R  R  F  G  G  S  G  V  T  N  *  H  V  D  L  G  D  R  V  L  R  T  D  T  *  I  *  R  I  E  C  H  E  P  T  H  R  F  R  G  S  E  C  H  V  L  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  G  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  A  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  C  V  R  K  K  A  *  *  I  D  R  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  Y  E  P  T  H  R  F  R  G  S  S  V  T  N  R  H  I  D  L  G  D  R  S  V  M  F  *  H  T  V  V  G  D  R  S  V  T  Y  R  H  K  R  V  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  Q  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  V  *  E  R  R  L  D  E  L  I  E  G  D  L  G  D  R  V  S  R  T  G  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  E  D  R  V  S  Q  I  D  T  *  I  W  G  I  G  C  H  E  L  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  E  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  C  S  D  T  Q  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="116806" e_stop="116557"/>
            <exon e_start="112318" e_stop="111860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.872"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="116806" e_stop="116557" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="116556" i_stop="112319" i_length="4238"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="112318" e_stop="111860" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116806" stop="116557"/>
              <exon start="112318" stop="111900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112145" stop="111860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTCAGTAATTTGAAGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTG : TAATAGTAATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGAAGGGTAAGTGTGGGTGCCAGTCGCGGCTCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTATGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTGTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCAAGGCAGGATATAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  S  V  I  *  S  R  C  S  C  G  D  D  F  Q  I  L  G  N  N  S  Y  *  I   : V  I  V  I  E  L  V  F  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  S  D  L  G  R  D  K  L  G  I  R  A  L  C  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  D  I  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  Q  *  F  E  V  D  V  L  V  V  M  T  S  R  F  W  E  I  I  V  I  E  L  :  *  *  *  L  N  W  F  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  E  G  *  V  W  V  P  V  A  A  P  I  W  V  V  T  N  L  V  S  E  H  Y  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  C  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  Q  G  R  I  *  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  *  M  F  L  W  *  *  L  P  D  F  G  K  *  *  L  L  N  C :   N  S  N  *  I  G  F  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  K  G  K  C  G  C  Q  S  R  L  R  F  G  S  *  Q  T  W  Y  Q  S  I  M  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  V  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  K  A  G  Y  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112096" stop="111884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFCLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQQGRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="119293" PGL_stop="119469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119293" e_stop="119469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="119293" e_stop="119469" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119293" stop="119469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="120845" PGL_stop="121203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120845" e_stop="121203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="120845" e_stop="121203" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120845" stop="121203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCGAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</gDNA_template>
            <first_frame> V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  E  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A   </first_frame>
            <second_frame>  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  </second_frame>
            <third_frame>   L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  R  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120939" stop="121202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHHYKFVMPIPGSKSSLWH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0066M20.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120970" stop="121167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSSLLLEYISMSSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="121578" PGL_stop="122297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121578" e_stop="122297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="121578" e_stop="122297" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121578" stop="122297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121581" stop="122244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTAGGTGGCATACCTTGATAATGCACGAATCTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAGCAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCGCATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACATCAAACCGTTCTACTATACCCATCTTGTGTAGTAGTTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCAGCATATTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAGTTCCTCATTCTGCACTTGCTCAGTTTCCTCTTCCTCACCCTCTCTTACAACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGAAAGGCT</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  *  *  C  T  N  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  I  K  P  F  Y  Y  T  H  L  V  *  *  F  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  V  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  S  I  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  H  L  L  S  F  L  F  L  T  L  S  Y  N  F  F  S  R  W  R  S  H  R  P  S  I  R  K  A </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  N  A  R  I  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  S  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  R  I  L  A  F  P  *  N  *  *  L  T  N  S  T  S  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  Y  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  S  S  S  F  C  T  C  S  V  S  S  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  E  R   </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  R  W  H  T  L  I  M  H  E  S  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  A  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  A  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  V  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  R  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  Q  H  I  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  V  V  P  H  S  A  L  A  Q  F  P  L  P  H  P  L  L  Q  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0066M20.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 288 chains have been computed
$ 
$ memory statistics:
$ 293160 bytes spliced alignments in total
$ 89 spliced alignments have been stored
$ 3293 bytes was the average size of a spliced alignment
$ 36992 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1422 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 401 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:56:23
-->
