<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:20:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1500" ref_strand="+" ref_description="SGN-M1500 T0616 [cos_markers]">
      <seq>gcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggctatgatgatagactcatttctggatcagttgatggattaatgtgtctatttgatactggtggagatatcaacgatgatgatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="641" stop="3222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="941" g_stop="1131" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="399" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="495" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="570" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2819" g_stop="2922" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="674" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-M1500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="941" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</genome_strand>
        <mrna_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="941" PGL_stop="2922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="941" e_stop="1131"/>
            <exon e_start="1235" e_stop="1442"/>
            <exon e_start="1525" e_stop="1620"/>
            <exon e_start="2021" e_stop="2095"/>
            <exon e_start="2819" e_stop="2922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="941" e_stop="1131" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1235" e_stop="1442" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.825">
            <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1525" e_stop="1620" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2021" e_stop="2095" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2819" e_stop="2922" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA : GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG : GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG : ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG : GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</gDNA_template>
            <first_frame> A  S  R  S  F  L  H  C  *  Q  R  E  K  K  K  K  K  K  M  D  G  A  E  E  M  E  I  E  G  Q  S  Q  L  L  P  I  C  N  D  S  K  R  F  G  I  K  N  S  I  Q  T  N  F  A  D  D  Y  V  F  Q  I  V  P  K :   N  D  W  T  S  M  A  V  S  L  S  T  N  A  I  K  L  Y  S  L  A  T  A  Q  Y  I  G  E  C  N  G  H  S  S  T  I  N  Q  I  S  F  S  D  P  S  S  P  H  V  L  H  S  C  S  S  D  G  T  L  R  A  W  D  T  R  S  F  Q  Q  :  V  F  S  L  N  A  G  P  S  Q  E  I  F  S  F  S  F  G  G  P  N  H  N  L  L  A  A  G  C  N  S  Q  :  I  L  F  W  D  W  R  T  K  R  Q  V  A  C  L  E  E  S  H  T  E  D  V  T  Q  :  V  H  F  I  P  G  Y  D  D  R  L  I  S  G  S  V  D  G  L  M  C  L  F  D  T  G  G  D  I  N  D  D  D  Q   </first_frame>
            <second_frame>  R  A  G  V  F  F  T  V  D  R  E  R  R  R  R  R  R  K  W  M  A  Q  R  R  W  K  *  R  D  N  R  S  C  F  Q  Y  A  T  I  L  S  D  L  V  S  K  T  L  F  R  L  T  S  P  T  I  T  F  S  K  L  F  P   : R  M  I  G  H  Q  W  R  Y  H  S  Q  L  M  R  L  S  C  T  L  *  L  L  H  S  T  L  G  N  V  M  V  I  L  Q  R  L  I  K  F  P  F  R  I  L  H  R  H  M  C  C  I  L  V  L  L  M  E  L  S  E  L  G  I  P  G  L  F  S  R :   C  F  P  *  M  L  A  L  L  K  R  Y  L  V  S  P  L  V  D  L  I  I  I  C  L  L  P  G  V  I  L  R :   Y  S  F  G  I  G  G  P  S  V  R  L  R  A  W  R  N  L  I  R  K  M  L  L  R :   C  T  L  F  Q  A  M  M  I  D  S  F  L  D  Q  L  M  D  *  C  V  Y  L  I  L  V  E  I  S  T  M  M  I  K  </second_frame>
            <third_frame>   E  P  E  F  S  S  L  L  T  E  R  E  E  E  E  E  E  N  G  W  R  R  G  D  G  N  R  G  T  I  A  V  A  S  N  M  Q  R  F  *  A  I  W  Y  Q  K  L  Y  S  D  *  L  R  R  R  L  R  F  P  N  C  S  Q  :  E  *  L  D  I  N  G  G  I  T  L  N  *  C  D  *  V  V  L  F  S  Y  C  T  V  H  W  G  M  *  W  S  F  F  N  D  *  S  N  F  L  F  G  S  F  I  A  T  C  A  A  F  L  F  F  *  W  N  S  Q  S  L  G  Y  Q  V  F  S  A   : G  V  F  P  K  C  W  P  F  S  R  D  I  *  F  L  L  W  W  T  *  S  *  S  A  C  C  R  V  *  F  S   : D  T  L  L  G  L  E  D  Q  A  S  G  C  V  L  G  G  I  S  Y  G  R  C  Y  S   : G  A  L  Y  S  R  L  *  *  *  T  H  F  W  I  S  *  W  I  N  V  S  I  *  Y  W  W  R  Y  Q  R  *  *  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="968" stop="1131"/>
                    <exon start="1235" stop="1442"/>
                    <exon start="1525" stop="1620"/>
                    <exon start="2021" stop="2095"/>
                    <exon start="2819" stop="2920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREKKKKKKMDGAEEMEIEGQSQLLPICNDSKRFGIKNSIQTNFADDYVFQIVPKNDWTSMAVSLSTNAIKLYSLATAQYIGECNGHSSTINQISFSDPSSPHVLHSCSSDGTLRAWDTRSFQQVFSLNAGPSQEIFSFSFGGPNHNLLAAGCNSQILFWDWRTKRQVACLEESHTEDVTQVHFIPGYDDRLISGSVDGLMCLFDTGGDINDDDQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5656 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5656 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:20:57
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