<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:17:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328215" ref_strand="+" ref_description="SGN-E328215 [cTOC-21-M6]">
      <seq>caaaccctaaaccctgcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttggtcttctgatggaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="626" stop="1711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="926" g_stop="1131" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1411" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="383" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E328215" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="926" e_stop="1131"/>
          <exon e_start="1235" e_stop="1411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCCTAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCT</genome_strand>
        <mrna_strand>CAAACCCTAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGGTCTTCTGATGGAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203945" ref_strand="+" ref_description="SGN-E203945 [cLEC-22-I21]">
      <seq>aaccctaaaccctgcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="628" stop="2364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="928" g_stop="1131" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="412" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="508" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2064" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="552" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E203945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="928" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTT</genome_strand>
        <mrna_strand>AACCCTAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208803" ref_strand="+" ref_description="SGN-E208803 [cLEC-51-H4]">
      <seq>taaaccctgcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaattcattcaatctgcttgctgccgggtgtaattctcacatactcttttgggattggaggaccaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="633" stop="2349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="933" g_stop="1131" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="407" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="506" r_length="99" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2049" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="535" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E208803" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="933" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAA-TCA-T-AATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCG</genome_strand>
        <mrna_strand>TAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATTCATTCAATCTGCTTGCTGCCGGGTGTAATTCTCAC................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372476" ref_strand="+" ref_description="SGN-E372476 [TUS-32-C22]">
      <seq>gcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggctatgatgatagactcatttctggatcagttgatggattaatgtgtctatttgatactggtggagatatcaacgatgatgatcaaatggtatcggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="641" stop="3232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="941" g_stop="1131" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="399" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="495" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="570" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2819" g_stop="2929" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="681" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E372476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="941" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCG</genome_strand>
        <mrna_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292420" ref_strand="+" ref_description="SGN-E292420 [cLET-1-P9]">
      <seq>gcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggctatgatgatagactcatttctggatcagttgatggattaatgtgtctatttgatactggtggagatatcaacgatgatgatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="641" stop="3222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="941" g_stop="1131" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="399" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="495" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="570" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2819" g_stop="2922" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="674" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E292420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="941" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</genome_strand>
        <mrna_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544654" ref_strand="+" ref_description="SGN-E544654 [TUS-67-B14]">
      <seq>gcgagccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaagtgcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="641" stop="2398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="941" g_stop="1131" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="399" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="495" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="570" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E544654" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="941" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG</genome_strand>
        <mrna_strand>GCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306018" ref_strand="+" ref_description="SGN-E306018 [cLEY-17-J16]">
      <seq>ccggagttttcttcactgttgacagagagagaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcaaagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcaaatactctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="646" stop="1924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="946" g_stop="1131" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="394" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="490" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E306018" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="946" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG</genome_strand>
        <mrna_strand>CCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAAAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745915" ref_strand="+" ref_description="SGN-E745915 [GI|47105487]">
      <seq>agaagaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcagttgcttccaatatgcaacgattctaagcgatttggtatcaaaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctactgcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggctatgatgatagactcatttctggatcagttgatggattaatgtgtctatttgatactggtggagatatcaacgatgatgatcaaatggtatcggtactcaatgtgggaacctctattggaaaagtgggatttcttggagagaagaatcagaagctttggtgtttgacacacattgaaactttaagtgtctgggactggaaagaagaaaaaaccgaggccagttttgaggatgctagatccttggcctctaagagctggatggcagacaacgttgactatttcattgattgccactattcagtggaggaagatcgtctctgggtaattggtggtacgaatggtggttcgttgggctatttccctgtaacttataaagagacacgagctattggtcctccagaagcaattttatgcggtggacatgaaggcatcattaggagtgtcttgtctggggtaccaggtcagaccatggataaccacgggatctttggatggactggtggtgaagatggtcgtctttgttgttggttgtctgatggttctagtacaagccaatcatggatctctactcttgctttgaaatcagacaagactcgccgaaagggcagacattccccgtactaacaatttttcctttggatggaaagattatgttgtatattatttattagttactccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="675" stop="4797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="975" g_stop="1131" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="365" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="461" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="536" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2819" g_stop="2929" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="647" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2930" i_stop="3493" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3494" g_stop="3585" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="739" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3586" i_stop="3771" i_length="186">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3772" g_stop="3856" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="824" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3857" i_stop="4086" i_length="230">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4087" g_stop="4494" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="1232" r_length="408" r_score="0.998"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4495" i_stop="4759" i_length="265">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4760" g_stop="4772" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1233" r_stop="1245" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E745915" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="975" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2929"/>
          <exon e_start="3494" e_stop="3585"/>
          <exon e_start="3772" e_stop="3856"/>
          <exon e_start="4087" e_stop="4494"/>
          <exon e_start="4760" e_stop="4772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCGGTATGTCAAAAAGAATTTTTGCAGTCCATATTTTCTGTTTATTTCATTTAAAAATTATAACTACAAGAACTTTTGAGAAGGTGCAGTCTCACTGATCACTTAAGGTGGAAAAGACTCAATAGTATGTCTTTTCATACTGTTATGCTTTTTACTAAAACTCACGCTGCTATATCTATAGAGATATATCAGATTGCTACTGAAACTTTTAATGATCTCAGTTAACTTGTACTCAAAAGACAAAAAGGTAGCTCATGTGTATTCTAGTTGTAAATTTTTTGTGCATCTCTTGTTATGAGAACATGACCTCCATCCATGCAGTATATGACACCTCGTCTTCTTCTCAGTTCTCAAGATGATTTTGAATTTTTTTTTTCTTTACTTCTGAAGTTGCTAGTTCTGACATCAGTACAGTGTAGATGTTTAGCTAAACTTTGACTAAAAAGCCTGGCATATTGCAGTTTAATTGATTGATGAGCACTCCAGTGTTTTCATATTTCTATCTACCGTTAAGTAGATTTCTGTTCTTTTTGATTGTATGCTACTTATACCAAGATGTAATTGCAGGTACTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAGGTTTTATAATATCCATATCAGCCTAATATGCTCCATACTGATTTGTCTTTTATGCTAAATTTTTGGTCCTTTTAGCACAGTTGGTGAATCTCACCATCTCTGAACACAATCTAAGCTATTTTTTTCCTACTTTCTGAGGAAAAATCTGAAACCCTCACCTTTTTTTTACTCCTTATTCCGGTGCAGTGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAACGTATGTGACTCTACACCTATTCATTTTCTTTATGCAGTGAATGTATTATCTGTTTTTGTTATAGATATATGACATGTATGGTACAAAAAGAAGACGAACTACTCCCAGTTTGCAGTTCTTCGTACTTGGCAACTGCAATGTTCTGTTGTATTTGAGGAGCAGTGCTATTTAAGGCAATAATTCTGAGTTAGAGCATAAACTGACTACTCCGGCTTAAACTCTGATGGCAGGTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAGACAAGACTCGCCGAAAGGGCAGACATTCCCCGTACTAACAATTTTTCCTTTGGATGGAAAGATTATGTTGTATATTATTTATTAGTTACTTCATATTGTCTTCGTCTCTTATATCAGTGTTGTGTCTTAAATTTATTTGTCAGGTTTGCTTCATTTGAAATGAGGAAATATGTCTGAAATATACCTCAACTTTGATTAAAAATTGTTATAACAATACCAAACTTTGAAAAAAACTTTTTACCTTCTGCACTATGTCGCGGATGGAAGGAGGGGTGAGAGCATAGCACACATAGTCACCCAGAAGCCAGTGTCCTTTTCTCCACCTCCCAAAACAAAAAGAAAGACAGTTAATGCAACAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAG..........................................................................................................................................................................................TGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAAC......................................................................................................................................................................................................................................GTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAGACAAGACTCGCCGAAAGGGCAGACATTCCCCGTACTAACAATTTTTCCTTTGGATGGAAAGATTATGTTGTATATTATTTATTAGTTACTCC.........................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355904" ref_strand="+" ref_description="SGN-E355904 [cLHT-12-J8]">
      <seq>gaagaagaagaagaaaatggatggcgcagaggagatggaaatagagggacaatcgcaggtgcttccaccatgcaacaattctaagcgatttggtatcagaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctacagcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccggttgtgattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggatatgatgatagactcatttctgcatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="679" stop="3164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="979" g_stop="1131" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1442" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="361" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="457" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="532" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2819" g_stop="2864" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="578" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E355904" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="979" e_stop="1131"/>
          <exon e_start="1235" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAG</genome_strand>
        <mrna_strand>GAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGGTGCTTCCACCATGCAACAATTCTAAGCGATTTGGTATCAGAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACAGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGTTGTGATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGATATGATGATAGACTCATTTCTGCATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355902" ref_strand="+" ref_description="SGN-E355902 [cLHT-12-J4]">
      <seq>ggaaatagagggacaatcgcaggtgcttccaccatgcaacaattctaagcgatttggtatcagaaactctattcagactaacttcgccgacgattacgttttccaaattgttcccaagaatgattggacatcaatggcggtatcactctcaactaatgcgattaagttgtactctttagctacagcacagtacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="715" stop="1697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1015" g_stop="1131" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1235" g_stop="1397" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="280" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E355902" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1015" e_stop="1131"/>
          <exon e_start="1235" e_stop="1397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAAGTAATTCTCTTCAGTTTTTCCTTTCACTTTCTTCATTGTTTTTTCTGTATTAGTAGTAAATTTTGGTCCTAAAATTCTCACTGAATGTTCGTGTTTATTATAGGAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCT</genome_strand>
        <mrna_strand>GGAAATAGAGGGACAATCGCAGGTGCTTCCACCATGCAACAATTCTAAGCGATTTGGTATCAGAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA.......................................................................................................GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACAGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274466" ref_strand="+" ref_description="SGN-E274466 [cLEN-19-F20]">
      <seq>taatgctattaagttgtactctttagctactgcactttacattggggaatgtaatggtcattcttcaacgattaatcaaatttccttttcggatccttcatcgccacatgtgctgcattcttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggctatgatgatagactcatttctggatcaagtgatggattaatgtgtctatttgatactggtggagatatcaacgatgatgatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="971" stop="3222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1271" g_stop="1442" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="268" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="343" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2819" g_stop="2922" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="447" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E274466" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1271" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</genome_strand>
        <mrna_strand>TAATGCTATTAAGTTGTACTCTTTAGCTACTGCACTTTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAAGTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215082" ref_strand="+" ref_description="SGN-E215082 [cLEC-78-B19]">
      <seq>ttgttcttctgatggaactctcagagcttgggataccaggtcttttcagcaggtgttttccctaaatgctggcccttctcaagagatatttagtttctcctttggtggacctaatcataatctgcttgctgccgggtgtaattctcagatactcttttgggattggaggaccaagcgtcaggttgcgtgcttggaggaatctcatacggaagatgttactcaggtgcactttattccaggctatgatgatagactcatttctggatcagttgatggattaatgtgtctatttgatactggtggagatatcaacgatgatgatcaaatggtatcggtactcaatgtgggaacctctattggaaaagtgggatttcttggagagaagaatcagaagctttggtgtttgacacacattgaaactttaagtgtctgggactggaaagaagaaaaaaccgaggccagttttgaggatgctagatccttggcctctaagagctggatggcagacaacgttgactatttcattgattgccactattcagtggaggaagatcgtctctgggtaattggtggtacgaatggtggttcgttgggctatttccctgtaacttataaagagacacgagctattggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="1091" stop="4512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1391" g_stop="1442" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1525" g_stop="1620" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="148" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2021" g_stop="2095" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="223" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2819" g_stop="2929" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="334" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2930" i_stop="3493" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3494" g_stop="3585" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="426" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3586" i_stop="3771" i_length="186">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3772" g_stop="3856" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="511" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3857" i_stop="4086" i_length="230">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4087" g_stop="4212" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="637" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E215082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1391" e_stop="1442"/>
          <exon e_start="1525" e_stop="1620"/>
          <exon e_start="2021" e_stop="2095"/>
          <exon e_start="2819" e_stop="2929"/>
          <exon e_start="3494" e_stop="3585"/>
          <exon e_start="3772" e_stop="3856"/>
          <exon e_start="4087" e_stop="4212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAGGTTCCAGTTTTTAACTTTAATGTGCTTTTTTTAGGAGTTGAGTTAGTATATTGTTTTTGATTTCAAATAAGATTGAATGCAGGTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAGGTACGAAACCTCGTGGCTGCAAATTAGCAGTGGTAAATTTAGTAGAATCCTTCGTTCGTGGATGCCCTCTGTGCCTCACAAAAGCAGCAGTGTTTATGAACTTGGTGTTTCTGTGCATGGTGTATATTTGAGAAATGAAGTGTTTTAACTATATATGGTTCAAGGGAAGGACAGTGATTGCTGGTCTGTCATGAACTATTTACTACTTGCTTCATCCTTCAAATTGTTTGAAACTACAAAAAGAATTCCACTTTGATATAATTCCTTAAGAACTCTCATGTTTACACAAGAGATGCGATTTGGCTTATTCTTTTAATTAAGGCACATGAAATTACTTGGCTCTATTTAGTTGTATGAGATATGTGGCAAATGACATTGCATTGTAATTATCTTTGTATAGATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAGGTGTGTTGCTATACTAGTTTATCGACTCATTTCCTGTGGATTATTGGTAGTAAACCATTGAGTTTATTGTGTTAATCTATGTCCTATAAGTTAATATTAGTTTCTCATTACCGCTAGAACAACTTATACCCATGTTACTACTATAATGTAGATTGTTATTTCTAAGAGCTGAACAATCTGAAGTTTCTTTTTTGTAGCATGATTGTAGAGAAACTTCAGCATGGTTAATTTTTCTGAAATATTATTTTATACCTGAGGTGCTCTTTGAGTATTTTCTGATTTCTGATAGTATGTTTTGTATTCTAATGATGACACGAAAGAAAGGTAATATATATATGCATACTAGGTATTATCTTGCTGTAGATTATTAGCTTGTTTTGAAGTTTGAGTGCGCGAGATTTAATTATACTTTTAAGTGCTAATTTCCAACTTTGTTAAAGTAGTTGGATGTTGTGCTGAACCTGCTATGGTTTTCAGTCATCTGATTACTGCTCCTATACCATTCAGAGATGAGATTGTGGTGTTTATTTCATGTTTCCTTAACTATATCTGAGCAAGAGGAGACAAAGTAATGACTGACCTAGTTGCGATGCAAAGTTCTTTATGCTTTTAATGATTACCAAATGCGCACCCTTTCAAAGTCTTTTGTCTTTTTTTTTTTTGGTGTTCAGAAATACTGCAATATGGTATCTTCAAGTCTCTTTTGTTGCTTGTTACTTTTAGGTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCGGTATGTCAAAAAGAATTTTTGCAGTCCATATTTTCTGTTTATTTCATTTAAAAATTATAACTACAAGAACTTTTGAGAAGGTGCAGTCTCACTGATCACTTAAGGTGGAAAAGACTCAATAGTATGTCTTTTCATACTGTTATGCTTTTTACTAAAACTCACGCTGCTATATCTATAGAGATATATCAGATTGCTACTGAAACTTTTAATGATCTCAGTTAACTTGTACTCAAAAGACAAAAAGGTAGCTCATGTGTATTCTAGTTGTAAATTTTTTGTGCATCTCTTGTTATGAGAACATGACCTCCATCCATGCAGTATATGACACCTCGTCTTCTTCTCAGTTCTCAAGATGATTTTGAATTTTTTTTTTCTTTACTTCTGAAGTTGCTAGTTCTGACATCAGTACAGTGTAGATGTTTAGCTAAACTTTGACTAAAAAGCCTGGCATATTGCAGTTTAATTGATTGATGAGCACTCCAGTGTTTTCATATTTCTATCTACCGTTAAGTAGATTTCTGTTCTTTTTGATTGTATGCTACTTATACCAAGATGTAATTGCAGGTACTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAGGTTTTATAATATCCATATCAGCCTAATATGCTCCATACTGATTTGTCTTTTATGCTAAATTTTTGGTCCTTTTAGCACAGTTGGTGAATCTCACCATCTCTGAACACAATCTAAGCTATTTTTTTCCTACTTTCTGAGGAAAAATCTGAAACCCTCACCTTTTTTTTACTCCTTATTCCGGTGCAGTGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAACGTATGTGACTCTACACCTATTCATTTTCTTTATGCAGTGAATGTATTATCTGTTTTTGTTATAGATATATGACATGTATGGTACAAAAAGAAGACGAACTACTCCCAGTTTGCAGTTCTTCGTACTTGGCAACTGCAATGTTCTGTTGTATTTGAGGAGCAGTGCTATTTAAGGCAATAATTCTGAGTTAGAGCATAAACTGACTACTCCGGCTTAAACTCTGATGGCAGGTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCT</genome_strand>
        <mrna_strand>TTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG..................................................................................GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAG..........................................................................................................................................................................................TGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAAC......................................................................................................................................................................................................................................GTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336637" ref_strand="+" ref_description="SGN-E336637 [cTOE-4-L1]">
      <seq>ctcaatgtgggaacctctattggaaaagtgggatttcttggagagaagaatcagaagctttggtgtttgacacacattgaaactttaagtgtctgggactggaaagaagaaaaaaccgaggccagttttgaggatgctagatccttggcctctaagagctggatggcagacaacgttgactatttcattgattgccactattcagtggaggaagatcgtctctgggtaattggtggtacgaatggtggttcgttgggctatttccctgtaacttataaagagacacgagctattggtcctccagaagcaattttatgcggtggacatgaaggcatcattaggagtgtcttgtctggggtaccaggtcagaccatggataaccacgggatctttggatggactggtggtgaagatggtcgtctttgttgttggttgtctgatggttctagtacaagccaatcatggatctctactcttgctttgaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="3197" stop="4702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3497" g_stop="3585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3586" i_stop="3771" i_length="186">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3772" g_stop="3856" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="174" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3857" i_stop="4086" i_length="230">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4087" g_stop="4402" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="490" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E336637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3497" e_stop="3585"/>
          <exon e_start="3772" e_stop="3856"/>
          <exon e_start="4087" e_stop="4402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAGGTTTTATAATATCCATATCAGCCTAATATGCTCCATACTGATTTGTCTTTTATGCTAAATTTTTGGTCCTTTTAGCACAGTTGGTGAATCTCACCATCTCTGAACACAATCTAAGCTATTTTTTTCCTACTTTCTGAGGAAAAATCTGAAACCCTCACCTTTTTTTTACTCCTTATTCCGGTGCAGTGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAACGTATGTGACTCTACACCTATTCATTTTCTTTATGCAGTGAATGTATTATCTGTTTTTGTTATAGATATATGACATGTATGGTACAAAAAGAAGACGAACTACTCCCAGTTTGCAGTTCTTCGTACTTGGCAACTGCAATGTTCTGTTGTATTTGAGGAGCAGTGCTATTTAAGGCAATAATTCTGAGTTAGAGCATAAACTGACTACTCCGGCTTAAACTCTGATGGCAGGTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAG</genome_strand>
        <mrna_strand>CTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAG..........................................................................................................................................................................................TGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAAC......................................................................................................................................................................................................................................GTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544653" ref_strand="-" ref_description="SGN-E544653 [TUS-67-B14](-)">
      <seq>ttttttttttttttagtgcagaaggtaaaaagtttttttcaaagtttggtattgttataacaatttttaatcaaagttgaggtatatttcagacatatttcctcatttcaaatgaagcaaacctgacaaataaatttaagacacaacactgatataagagacgaagacaatatgaagtaactaataaataatatacaacataatctttccatccaaaggaaaaattgttagtacggggaatgtctgccctttcggcgagtcttgtctgatttcaaagcaagagtagagatccatgattggcttgtactagaaccatcagacaaccaacaacaaagacgaccatcttcaccaccagtccatccaaagatcccgtggttatccatggtctgacctggtaccccagacaagacactcctaatgatgccttcatgtccaccgcataaaattgcttctggaggaccaatagctcgtgtctctttataagttacagggaaatagcccaacgaaccaccattcgtaccaccaattacccagagacgatcttcctccactgaatagtgggcaatcaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="4954" stop="3796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4772" g_stop="4760" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4759" i_stop="4655" i_length="105">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4654" g_stop="4096" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="573" r_length="560" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E544653" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544653" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4772" e_stop="4760"/>
          <exon e_start="4654" e_stop="4096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTGTTGCATTAACTGTCTTTCTTTTTGTTTTGGGAGGTGGAGAAAAGGACACTGGCTTCTGGGTGACTATGTGTGCTATGCTCTCACCCCTCCTTCCATCCGCGACATAGTGCAGAAGGTAAAAAGTTTTTTTCAAAGTTTGGTATTGTTATAACAATTTTTAATCAAAGTTGAGGTATATTTCAGACATATTTCCTCATTTCAAATGAAGCAAACCTGACAAATAAATTTAAGACACAACACTGATATAAGAGACGAAGACAATATGAAGTAACTAATAAATAATATACAACATAATCTTTCCATCCAAAGGAAAAATTGTTAGTACGGGGAATGTCTGCCCTTTCGGCGAGTCTTGTCTGATTTCAAAGCAAGAGTAGAGATCCATGATTGGCTTGTACTAGAACCATCAGACAACCAACAACAAAGACGACCATCTTCACCACCAGTCCATCCAAAGATCCCGTGGTTATCCATGGTCTGACCTGGTACCCCAGACAAGACACTCCTAATGATGCCTTCATGTCCACCGCATAAAATTGCTTCTGGAGGACCAATAGCTCGTGTCTCTTTATAAGTTACAGGGAAATAGCCCAACGAACCACCATTCGTACCACCAATTACCCAGAGACGATCTTCCTCCACTGAATAGT-GGCAATCAATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTT.........................................................................................................TAGTGCAGAAGGTAAAAAGTTTTTTTCAAAGTTTGGTATTGTTATAACAATTTTTAATCAAAGTTGAGGTATATTTCAGACATATTTCCTCATTTCAAATGAAGCAAACCTGACAAATAAATTTAAGACACAACACTGATATAAGAGACGAAGACAATATGAAGTAACTAATAAATAATATACAACATAATCTTTCCATCCAAAGGAAAAATTGTTAGTACGGGGAATGTCTGCCCTTTCGGCGAGTCTTGTCTGATTTCAAAGCAAGAGTAGAGATCCATGATTGGCTTGTACTAGAACCATCAGACAACCAACAACAAAGACGACCATCTTCACCACCAGTCCATCCAAAGATCCCGTGGTTATCCATGGTCTGACCTGGTACCCCAGACAAGACACTCCTAATGATGCCTTCATGTCCACCGCATAAAATTGCTTCTGGAGGACCAATAGCTCGTGTCTCTTTATAAGTTACAGGGAAATAGCCCAACGAACCACCATTCGTACCACCAATTACCCAGAGACGATCTTCCTCCACTGAATAGTGGGCAATCAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352979" ref_strand="+" ref_description="SGN-E352979 [cTOS-14-O13]">
      <seq>agacacgagctattggtcctccagaagcaattttatgcggtggacatgaaggcatcattaggagtgtcttgtctggggtaccaggtcagaccatggataaccacgggatctttggatggactggtggtgaagatggtcgtctttgttgttggttgtctgatggttctagtacaagccaatcatggatctctactcttgctttgaaatcagacaagactcgccgaaagggcagacattccccgtactaacaatttttcctttggatggaaagattatgttgtatattatttattagttacttcatattgtcttcgtctcttatatcagtgttgtgtcttaaatttatttgtcaggtttgcttcatttgaaatgaggaaatatgtctgaaatatacctcaactttgattaaaaattgttataacaataccaaactttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="+" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="3893" stop="4935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4193" g_stop="4638" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="+" ref_id="SGN-E352979" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4193" e_stop="4638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAGACAAGACTCGCCGAAAGGGCAGACATTCCCCGTACTAACAATTTTTCCTTTGGATGGAAAGATTATGTTGTATATTATTTATTAGTTACTTCATATTGTCTTCGTCTCTTATATCAGTGTTGTGTCTTAAATTTATTTGTCAGGTTTGCTTCATTTGAAATGAGGAAATATGTCTGAAATATACCTCAACTTTGATTAAAAATTGTTATAACAATACCAAACTTTGAAAAAAACTT</genome_strand>
        <mrna_strand>AGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAGACAAGACTCGCCGAAAGGGCAGACATTCCCCGTACTAACAATTTTTCCTTTGGATGGAAAGATTATGTTGTATATTATTTATTAGTTACTTCATATTGTCTTCGTCTCTTATATCAGTGTTGTGTCTTAAATTTATTTGTCAGGTTTGCTTCATTTGAAATGAGGAAATATGTCTGAAATATACCTCAACTTTGATTAAAAATTGTTATAACAATACCAAACTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331966" ref_strand="+" ref_description="SGN-E331966 [cTOD-16-O14]">
      <seq>tgaatcactgaatttctcagcatgaagtagtaaacttgatatcttacagttaccggcattgcccctacaatcaagcgagcgccattgaaatggacggagcagcagcagcttcttcaccgtcgactattaaacccataaacaagagcgtagtccatagaatttgtgcgggtcaagttattctggaccttccctctgccgtcaaggaattggttgaaaatagcttggacgccggagctaccagcatcgaagtctccctcaaagactatggttctgaatccttccaggtcattgataacggttgtggcatctcgcctcaaaatttcaaggtattggcgctaaaacatcatacctcaaaactatcagattttcctgatcttcagtcattagtgacttttggatttagaggggaggcattgagttcactttgtgctttaggggatttgacagttgaaacaagaacaaagaatgagcaaattgcgacacacttgacttttgatcattcgggccttctgatagctgaaaggaacatagctcgccaagttggtaccactgtcactgttaagaagttgttctccactttaccagtgagaagtaaagaattccaccgcaatatccggaaggaatatggaaagcttatcacattgctgaatgcctatgctcttatttctaagggagtcagactagtttgtaccaactcagctctaaaaatgcaaaatctgtagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="13990" stop="11249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13690" g_stop="13365" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13364" i_stop="12865" i_length="500">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12864" g_stop="12541" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="650" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12540" i_stop="11627" i_length="914">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11626" g_stop="11549" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="727" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E331966" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13690" e_stop="13365"/>
          <exon e_start="12864" e_stop="12541"/>
          <exon e_start="11626" e_stop="11549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCACTGAATTTCTCAGCATGAAGTAGTAAACTTGATATCTTACAGTTACCGGCATTGCCCCTACAATCAAGCGAGCGCCATTGAAATGGACGGAGCAGCAGCAGCTTCTTCACCGTCGACTATTAAACCCATAAACAAGAGCGTAGTCCATAGAATTTGTGCGGGTCAAGTTATTCTGGACCTTCCCTCTGCCGTCAAGGAATTGGTTGAAAATAGCTTGGACGCCGGAGCTACCAGCATCGAAGTCTCCCTCAAAGACTATGGTTCTGAATCCTTCCAGGTCATTGATAACGGTTGTGGCATCTCGCCTCAAAATTTCAAGGTCTTTTCCTCTTCTGTTTTCTGCTCACTTTCTTTCTGGATGCAAAAAGTTGCTGCATGTAGGACAATAACTATTAGTTGAGTGATCGAGTCTAAGTCTTATTGTTAATTGTTGTAAGTGAAGAAGCTAGTGATATTGTGTCTCTGTTTCGAGCTTTCCATATATGTTTTTGTATGTGTATGTGTAATATGTATGCACAGACAGACACGCACTTATACATGTGTAAAGGGTTTGTAGTCTTTCTCTATACTACTTTCTGTTTTCAATCAAAGTTGCGTCAATGTGTATATAAATGTGTTGATGTGCACATGCGCGTGCACCTGTACTCTAATCTCTATTTTCAATCAAGGTTGTTTCTGCTATGATGTAGTTCCACTTGATGCTAATTTCCACTGTTTATTTATGTTTCTTCGTTTCTGTTGATTAACTTCACTAGTTGTTGTGTCCATAGTAAATTGAGCTAATTTGATACTAAGTGTGTGGATGTTTTTGTATTGAAGGTATTGGCGCTAAAACATCATACCTCAAAACTATCAGATTTTCCTGATCTTCAGTCATTAGTGACTTTTGGATTTAGAGGGGAGGCATTGAGTTCACTTTGTGCTTTAGGGGATTTGACAGTTGAAACAAGAACAAAGAATGAGCAAATTGCGACACACTTGACTTTTGATCATTCGGGCCTTCTGATAGCTGAAAGGAACATAGCTCGCCAAGTTGGTACCACTGTCACTGTTAAGAAGTTGTTCTCCACTTTACCAGTGAGAAGTAAAGAATTCCACCGCAATATCCGGAAGGAATATGGAAAGCTTATCACATTGCTGAATGTATGATCCCTTTAATCTGTATTATCTTACTCTTGTTTGGCTATTGATTTCTTAGGATGGTTTTATTTTAATGAAACTTAAGAATTGAGATGGGAATGTCAACTGGTGCCGTCAAATCTATAGGGTCTTCGTGATGGTATAATCCAATTCAGTTCAAGTTGGTTTGAACTTCAAGCATCAATTTTTGTTACAGTAGCTATCTTGTTCTTTGTCCTTTTGGAGGAAGTTGTTTCCTAATTTTAGAAATTTGTCGACTACTATTAAGAAAGAGGTAAAAATGAGAATTTCTTCACCATATTGAAATTTTCATTTTAAGATTCTACTTGGAGTATCTCGGCTATGAATTATCGCCTAAAAGACACTGTTGCAGATGAATTTGTATGTCTAGCAGTTATGCTGTGTTGGTGCTGTAATATCTTCTGGAGATCCTTTAATATCTGCTAAATTCATTTTTTATTCAAATGGAAAAGCTTAAAGTAAGTTGGAAACCAGCTGAAAGAATTTGAGCCCCTTTATGAACTCAAGCATTACAAGGGGTAAGAAATACAAAAGCTTCCCAGGAAATTGAAGTTCCTATCTAAATTGAAGATTGCACAAATTGTGGAGCAATATGTAGAGACTCATACTTTTGTGTAGGCTATCCACTTTTTCTTTGGGTATACTTCTTGTATAGGGGAGATTTCTCTCTTTAGTGAAATCGATTAACTTCATCAAAAAATCTTTTTGCTTCTGGTGATTGTGAATTTCATTGTGCTATAGTTTGGTGACCTTTCATGTTAGACTGCTTAATAATTTGTTCTTGTCAAGGTTCTTAATCTTGAGAGAGTATGTGCATGGTTTCTGCTGAAGAAGTATTTTAATGCTTTTGTTGTTTAAGTTATTTATTTGCTTTCTTTTGTTGGTTGAACTTCTAGGCCTATGCTCTTATTTCTAAGGGAGTCAGACTAGTTTGTACCAACTCAGCTCTAAAAAATGCAAAATCTGTAGTTCTG</genome_strand>
        <mrna_strand>TGAATCACTGAATTTCTCAGCATGAAGTAGTAAACTTGATATCTTACAGTTACCGGCATTGCCCCTACAATCAAGCGAGCGCCATTGAAATGGACGGAGCAGCAGCAGCTTCTTCACCGTCGACTATTAAACCCATAAACAAGAGCGTAGTCCATAGAATTTGTGCGGGTCAAGTTATTCTGGACCTTCCCTCTGCCGTCAAGGAATTGGTTGAAAATAGCTTGGACGCCGGAGCTACCAGCATCGAAGTCTCCCTCAAAGACTATGGTTCTGAATCCTTCCAGGTCATTGATAACGGTTGTGGCATCTCGCCTCAAAATTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGCGCTAAAACATCATACCTCAAAACTATCAGATTTTCCTGATCTTCAGTCATTAGTGACTTTTGGATTTAGAGGGGAGGCATTGAGTTCACTTTGTGCTTTAGGGGATTTGACAGTTGAAACAAGAACAAAGAATGAGCAAATTGCGACACACTTGACTTTTGATCATTCGGGCCTTCTGATAGCTGAAAGGAACATAGCTCGCCAAGTTGGTACCACTGTCACTGTTAAGAAGTTGTTCTCCACTTTACCAGTGAGAAGTAAAGAATTCCACCGCAATATCCGGAAGGAATATGGAAAGCTTATCACATTGCTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATGCTCTTATTTCTAAGGGAGTCAGACTAGTTTGTACCAACTCAGCTCT-AAAAATGCAAAATCTGTAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538523" ref_strand="+" ref_description="SGN-E538523 [TUS-57-M16](-)">
      <seq>gggggaagatttgaccatgagatgggaaatattaatgtcatatgctgtttcccctccatgcggattattcttctctctgatgatagtctaatccaacttcttccaagtaagcatcatcacaagattcatatacaatccttagttgagggcccacattgcggactcatacccattggaatggttgccggaagaaccagtactacgggtctccaatggaatcttgataataccgaaatgagatttggtggcttagtcagtacatcaaatatcgtgaaagaaaacatagttacagtgcaatctgattcggacctcctatggacaatttctatcaaaaaagattgaatgatgcagtttttgcagatgaaatgattgagagacaatcaacgaaactttgttgaacgcgaacctccattttctgaaacaatggggttattctttactactttttttttttctgtaggaaaaaagcatccctttagtctatctttgtgaggcacaagcagatctatttgacatcaggtgcctgcattgcagtaaaggaaaaaaaaataacacaggggctacgagtgagagtaagctcattgcgggttaactttgatcgtcaacttttgcttatgtgctgtaggaatttagtagcacgttttctaatgttttgcatacgttattctttatccaatgtaatgaaataaggaaattttactattaatttgaattattagatagcagttatgtaaaaaaaaaaaagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="16939" stop="14502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16639" g_stop="16417" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16416" i_stop="15313" i_length="1104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15312" g_stop="14805" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="731" r_length="508" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="745"/>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E538523" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16639" e_stop="16417"/>
          <exon e_start="15312" e_stop="14805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATCACAAGATTCATATACAATCCTTAGTTGAGGGCCCACATTGCGGACTCATACCCATTGGAATGGTTGCCGGAAGAACCAGTACTACGGGTCTCCAATGGAATCTTGGTGAGTAGCTCAATCTACTTTTTCCATACAAAATTTTATGTGGGGTTTAGATGCTACCTACTTTATTTTGTTATGGGCTAATGCTTTATGCCAAGGACATCTCTGTTTAGCTATTGGTTCATTTACAAGAAGGATACAATTCTCGCCAGATAGCCAATGCTAACATTTTTTCTGGTAACCAACTTTAGTTTCATTACCTAAGTGATGCTTTACAAACCATCTGAAGGGAGAGTACTTGTTGGACACAGTCCCCCTCAAGTACTCCGTCAAAAATACACAAGCTAACATCAAGAGCAAATAGAGTCAATTATAACTACCAGAGCCTATAATAACAAGTCATAGGCAGCTATGGATAAACGTTGTGATCTGTCAACCATCCTCCAAGCTTTGCAACTTTCCTGCTTTAATATGGATTTCATGTATCACTTTCTTGATCATCATTGTTGTGGACTGTGTTCTTGTTTACGAAAATCCCTGAGTTCCTTTCTCTCCATAAAATATAAACTCCTGCAGCCAGCATCATCCTGTATTATCTCTGCTTTGTGACTTCTGCCTTTTGCATATGCTTCAGCTCAAAGTAATTCTTCATTCCACCCCATGGTGCCTCTGCCAATCCATATTAAGAGTTTTTCCATACCTGAGTTGATATTATTCAAGCAAAGAACAGGTGGTTTATACTCATTTTCCAGCTCACACAGTGCACATTGTGGTTGTGTTGTCAACTCCCCATTTAAAGAATTTATCTCTTGTGTTCAGCCTTCCCAAGGCAGCCAGTTCGAGTATGAAGATCCATCTAGGTAGCCCTAAATTTTTACGCTCCGTCTTCCTCCAAGTTACTTTGTGGAATTGCCCTCTAAGTCTCAACCACATTTACTTGATTGAGAAGGAGAGTGCATCTGCAATATCTCAGCAGCCACAAAATATCTACTAGCCTTCAGAATATTTTGAATAATCCAAGAAGCTTCTTAGGTACCTCATCAAAAATATTCCTGTTTCTCCCATAATAACAATAAAACCATTTGACCCATAGTCGATGTCGTTGTACTTGTGATTATCTAGTTTAAATGCTTGACTCTGATATACCTTTACTTTACTTTTGTTCAGATAATACCGAAATGAGATTTGGTGGCTTAGTCAGTACATCAAATATCGTGAAAGAAAACATAGTTACAGTGCAATCTGATTCGGACCTCCTATGGACAATTTCTATCAAAAAAGATTGAATGATGCAGTTTTTGCAGATGAAATGATTGAGAGACAATCAACGAAACTTTGTTGAACGCGAACCTCCATTTTCTGAAACAATGGGGTTATTCTTTACTACTTTTTTTTTTTCTGTAGGAAAAAAGCATCCCTTTAGTCTATCTTTGTGAGGCACAAGCAGATCTATTTGACATCAGGTGCCTGCATTGCAGTAAAGGAAAAAAAAATAACACAGGGGCTACGAGTGAGAGTAAGCTCATTGCGGGTTAACTTTGATCGTCAACTTTTGCTTATGTGCTGTAGGAATTTAGTAGCACGTTTTCTAATGTTTTGCATACGTTATTCTTTATCCCATGTAATGAAATAAGGAAATTTTACTATTAATTTGAATTATTAGATAGCCATTATT</genome_strand>
        <mrna_strand>GGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATCACAAGATTCATATACAATCCTTAGTTGAGGGCCCACATTGCGGACTCATACCCATTGGAATGGTTGCCGGAAGAACCAGTACTACGGGTCTCCAATGGAATCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACCGAAATGAGATTTGGTGGCTTAGTCAGTACATCAAATATCGTGAAAGAAAACATAGTTACAGTGCAATCTGATTCGGACCTCCTATGGACAATTTCTATCAAAAAAGATTGAATGATGCAGTTTTTGCAGATGAAATGATTGAGAGACAATCAACGAAACTTTGTTGAACGCGAACCTCCATTTTCTGAAACAATGGGGTTATTCTTTACTACTTTTTTTTTTTCTGTAGGAAAAAAGCATCCCTTTAGTCTATCTTTGTGAGGCACAAGCAGATCTATTTGACATCAGGTGCCTGCATTGCAGTAAAGGAAAAAAAAATAACACAGGGGCTACGAGTGAGAGTAAGCTCATTGCGGGTTAACTTTGATCGTCAACTTTTGCTTATGTGCTGTAGGAATTTAGTAGCACGTTTTCTAATGTTTTGCATACGTTATTCTTTATCCAATGTAATGAAATAAGGAAATTTTACTATTAATTTGAATTATTAGATAGCAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538524" ref_strand="+" ref_description="SGN-E538524 [TUS-57-M16]">
      <seq>cagaatcagtaggggtgtgcgcaagttagcaacgatgagtttgacgtctcattcttctactttcctcttaccaaatcttcccgccgacgacggacctgctctaacgtacgctctcgttatccttaaccaaagcctcccgaaattcactcctctgctttggaagcacgcaaaggttcatatttgtgctgacggtggagcgaatagggtgtttgatgaattgcctggcatgtttcctcatgaggaggcatctgaaattcgtaagaggtacaagccctatgctataaaaggagatatggattcaatcagaactgatgttcttgattattacagaggcctgggaaccaagataattgatgaatctcaagatcaagatactacagatcttaataaatgcgttacatatattcgtgactcactaaactcggaacatccaaatttgtgtattctagtcactggagcacttgggggaagatttgaccatgagatgggaaatattaatgtcatatgctgtttcccctccatgcggattattcttctctctgatgatagtctaatccaacttcttccaagtaagcatcatcacaagattcatatacaatccttagttgagggcccacattgcggactcatacccattggaatggttgccggaagaaccagtactacgggtctccaatggaatcttgataataccgaaatgagatttggtggcttagtcagtacatcaaatatcgtggaagaaacatagttacagtggcatctgattcggacctcctatggacaatttctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="20153" stop="14906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19853" g_stop="19687" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19686" i_stop="19435" i_length="252">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19434" g_stop="19338" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="264" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19337" i_stop="18363" i_length="975">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18362" g_stop="18290" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="337" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18289" i_stop="17371" i_length="919">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17370" g_stop="17272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="436" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17271" i_stop="16667" i_length="605">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16666" g_stop="16417" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="686" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16416" i_stop="15313" i_length="1104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15312" g_stop="15206" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="792" r_length="106" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E538524" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19853" e_stop="19687"/>
          <exon e_start="19434" e_stop="19338"/>
          <exon e_start="18362" e_stop="18290"/>
          <exon e_start="17370" e_stop="17272"/>
          <exon e_start="16666" e_stop="16417"/>
          <exon e_start="15312" e_stop="15206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACGGTAATGGACTTGCGGCTCTTCGTTTTTTTTCAACGTTTTTCGCAGTTTTCTGTGTTGTTATAGTCTAAATATGGTATATGTGAAATGGTGATCTCTTCGTAAAATTATAATATTTAAGTTATTTAGCTTGAGAACTGGGTATCAATTTGTTCCTGATTCATTTTTTTTGAACTTTTTTTAAGTAGTGCATTTGGCTCTGGGATTTGTGTTTGTTTTTGTCTAATATGGTGAATATGTTGTTGTTTAGAACAGCAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAGGTGAGTTTGAATATATTGAGTGAGTTATGTGGTTAATGAGTTCTGTAGTAGCTTATTGATTTAATTTGATGTGTTTTTTTAATGAGTTTTGTGGTAGTTTACTTTCTACAAAAGAAATTTTATTAGCTTTTGAGGTGTTTAGAGAGGAACAACTTTTTTTTGTAGTTTACTTACTACAAAAGAAATTTTACTCTTTTGTCTTTTCCTTTGTGTGTTTTCAATGTGTGAAATCTGTTTTTGATTCCATTGTTTTCTCCATCTTTTTTTATGTCTGCCTATGTTGTTGTTGTTTGAATCACCTCGCGAAAAGTTTTAGCTCATAGAGAGATTTTATTCTTAGTCTATGTCCCTAAAACTCTCAAAAAATGCACTGCTTTTGGAGGATGTGACATGCATCCATATATATCTTTGAAGAGTCCAAGCAAAAAAGCAACGAAAAATCAACAAGGGTTATGTTGGAATGGTAACTACTCTTTCATCCTTAATCGGAGGTCTCAAGTTCAAATCCTCTTCATTATGAAATCGCCTTTGCTAGGGATCGGAGCTTTAGTCTTGGAATTCCAATTCATAATGAGCATCTATAAATAAAAGTTGTTCGTGGATCAGTTACATTTACAACACTTCCACATGTGCGAGCCTCGTTTATTATTCCTTGGACCAAGATGGACTAAAGGAAAGCTTAACTTGGATTTCTACATTAGGGAAGAAAATTAGTCACTATTTGAGATCAGGTTAGGTTGTCTGCATCACATCACTTGGGGTGCAGTCTTCTCTGTTCCCCGCTAACACGGATGCTTTGTGCACCGGGTTGCCTTTCTATAATAGGATTGAACTTTAAATTAGCTAAAACACAATCTGACTATATATAAAAGCTCATATTTTATCTTTTTGTTTGGCCAAAGCACATTTTCTTTATGTTTGAAAACTTGTCTGTTATCATTGATTGAATTAGACTAAATCATGATCTTATTGCAGGTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTGGTAAGCCAGAATTTTCTTATGGTGGTCCTACAGTTGCTCAACAAATTTCTTTTGAAATGGGATATTTTTTTTAAGAAAATTGTGTAGGGATAAGTTTAAAATTTAGAGAACATTAGTTTTAGAGAAACCATAGTTTGCCTTAAAGGACAAATTATTTAGTATTGAAACTAAATGGAGCCTGAATTGTGTGGCCGAAAGGATACAGATGATTGATGTGGCGACCTAGTTAATTGAGATATATTTCAAAATTTGTCCCTTAAGACTACTTTAATTGAATCATCACTCTGGGTTAAATGCTTGCCTCCAGGGAGGATCTCAAAGAATTTGATGTTAAAAATTGCCTTGTATCTTTTTAGAGAAAGGTAACATGGTGAGTCTTTTTTCCATGTGGTGGCTCAAATTGGATACATTATGGAGTGGGACATCATGTGACGGGTTACTAGTGTATGATGTGTTAAGGGCTTATGTAATAACAAAATGAAAAACTTTGCTAAATTGTGTGCCAGAGTGAGAAACTTGCTTACAGCACAGTGAGCTCTGCAAATATATTCTTCAGTCTGGTAGAGAGAGGCCTACTTTGTTAACACCATGAAGTTCCCAAATTTATTGTTGAGTTCAAGCTTTTGAGCTGCATAACGACCATTGTTACACTTTTAGATACTAGTTTTTGTGTGAGTATTACATCAAATGTATGTGCTCTTTTCTAAATGTCTTTCTAGCCTATTTAACAATTATACATGTGCATTTTTCTCATTTTGAATCATGTTAAAACTCCAATTTTGGGGATGATTAGTTAGCTGTCTACATTTGTGTTTCATTTTCCAGCATTTCATTACAAAGCATGTTTGAACCGTATTTTGAAGATCTACCGATTTGGGAAAAACCATATTTTGAAGATTTGCTTGCTAACCACATGCAGGGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAATGTAAGTTAAGCCTTGCAGCATAGCTCTGGAAATTTTTAACCTTTTTCTATTCGCTATAAATATGTGGTATTTCTAGTTTACATCTGTTAAAAATGTCATTTCACTATATAGTTTCTCGACCAATATCTCCATCATCAACCCTTGTGGATATTTGTGATCTAATTCTTCTGCAGTTATATTTACTCCAAATAATTAAGATATTATTCTTTTTAGAATGGATGCTTGAAATAGTAAAAATTTTGAGCTTTGCCCTAAATGGTTCTGGATCATCATGCACTGTCAAATTTTGGAGTTGACACATTGGGTTTTGGTGATATACATTTTAAAGTATGGCAGTCATTAAAACATGAAACTGTATTAAATGGTGCAATATGTATTATATATTTTTAAGAATAAATGGAGCAGTATATTTTGTTGTCTTTTTATTATTATTTTGAGTTCATCACTGCATCTATTGACATTGAAAAAAAACGATTATTGTGAAGCTTAAAAGTCTGATGCAGTATTACAAGACAACATATTGACTTGAATATAGGCTTCCATCACTGGAAAGAACGTCCTAATAGAGTTTCAGTGGGATTAACTTTATCTCTGTGTAATTACAGTTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATCACAAGATTCATATACAATCCTTAGTTGAGGGCCCACATTGCGGACTCATACCCATTGGAATGGTTGCCGGAAGAACCAGTACTACGGGTCTCCAATGGAATCTTGGTGAGTAGCTCAATCTACTTTTTCCATACAAAATTTTATGTGGGGTTTAGATGCTACCTACTTTATTTTGTTATGGGCTAATGCTTTATGCCAAGGACATCTCTGTTTAGCTATTGGTTCATTTACAAGAAGGATACAATTCTCGCCAGATAGCCAATGCTAACATTTTTTCTGGTAACCAACTTTAGTTTCATTACCTAAGTGATGCTTTACAAACCATCTGAAGGGAGAGTACTTGTTGGACACAGTCCCCCTCAAGTACTCCGTCAAAAATACACAAGCTAACATCAAGAGCAAATAGAGTCAATTATAACTACCAGAGCCTATAATAACAAGTCATAGGCAGCTATGGATAAACGTTGTGATCTGTCAACCATCCTCCAAGCTTTGCAACTTTCCTGCTTTAATATGGATTTCATGTATCACTTTCTTGATCATCATTGTTGTGGACTGTGTTCTTGTTTACGAAAATCCCTGAGTTCCTTTCTCTCCATAAAATATAAACTCCTGCAGCCAGCATCATCCTGTATTATCTCTGCTTTGTGACTTCTGCCTTTTGCATATGCTTCAGCTCAAAGTAATTCTTCATTCCACCCCATGGTGCCTCTGCCAATCCATATTAAGAGTTTTTCCATACCTGAGTTGATATTATTCAAGCAAAGAACAGGTGGTTTATACTCATTTTCCAGCTCACACAGTGCACATTGTGGTTGTGTTGTCAACTCCCCATTTAAAGAATTTATCTCTTGTGTTCAGCCTTCCCAAGGCAGCCAGTTCGAGTATGAAGATCCATCTAGGTAGCCCTAAATTTTTACGCTCCGTCTTCCTCCAAGTTACTTTGTGGAATTGCCCTCTAAGTCTCAACCACATTTACTTGATTGAGAAGGAGAGTGCATCTGCAATATCTCAGCAGCCACAAAATATCTACTAGCCTTCAGAATATTTTGAATAATCCAAGAAGCTTCTTAGGTACCTCATCAAAAATATTCCTGTTTCTCCCATAATAACAATAAAACCATTTGACCCATAGTCGATGTCGTTGTACTTGTGATTATCTAGTTTAAATGCTTGACTCTGATATACCTTTACTTTACTTTTGTTCAGATAATACCGAAATGAGATTTGGTGGCTTAGTCAGTACATCAAATATCGTGAAAGAAAACATAGTTACAGTGCAATCTGATTCGGACCTCCTATGGACAATTTCTATC</genome_strand>
        <mrna_strand>CAGAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACG............................................................................................................................................................................................................................................................CAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATCACAAGATTCATATACAATCCTTAGTTGAGGGCCCACATTGCGGACTCATACCCATTGGAATGGTTGCCGGAAGAACCAGTACTACGGGTCTCCAATGGAATCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACCGAAATGAGATTTGGTGGCTTAGTCAGTACATCAAATATCGTGGAAG-AAACATAGTTACAGTGGCATCTGATTCGGACCTCCTATGGACAATTTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271742" ref_strand="+" ref_description="SGN-E271742 [cLEM-23-N6]">
      <seq>agaatcagtaggggtgtgcgcaagttagcaacgatgagtttgacgtctcattcttctactttcctcttaccaaatcttcccgccgacgacggacctgctctaacgtacgctctcgttatccttaaccaaagcctcccgaaattcactcctctgctttggaagcacgcaaaggttcatatttgtgctgacggtggagcgaatagggtgtttgatgaattgcctggcatgtttcctcatgaggaggcatctgaaattcgtaagaggtacaagccctatgctataaaaggagatatggattcaatcagaactgatgttcttgattattacagaggcctgggaaccaagataattgatgaatctcaagatcaagatactacagatcttaataaatgcgttacatatattcgtgactcactaaactcggaacatccaaatttgtgtattctagtcactggagcacttgggggaagatttgaccatgagatgggaaatattaatgtcatatgctgtttcccctccatgcggattattcttctctctgatgatagtctaatccaacttcttccaagtaagcatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="20152" stop="16222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19852" g_stop="19687" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19686" i_stop="19435" i_length="252">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19434" g_stop="19338" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="263" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19337" i_stop="18363" i_length="975">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18362" g_stop="18290" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="336" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18289" i_stop="17371" i_length="919">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17370" g_stop="17272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="435" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17271" i_stop="16667" i_length="605">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16666" g_stop="16522" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="580" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E271742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19852" e_stop="19687"/>
          <exon e_start="19434" e_stop="19338"/>
          <exon e_start="18362" e_stop="18290"/>
          <exon e_start="17370" e_stop="17272"/>
          <exon e_start="16666" e_stop="16522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACGGTAATGGACTTGCGGCTCTTCGTTTTTTTTCAACGTTTTTCGCAGTTTTCTGTGTTGTTATAGTCTAAATATGGTATATGTGAAATGGTGATCTCTTCGTAAAATTATAATATTTAAGTTATTTAGCTTGAGAACTGGGTATCAATTTGTTCCTGATTCATTTTTTTTGAACTTTTTTTAAGTAGTGCATTTGGCTCTGGGATTTGTGTTTGTTTTTGTCTAATATGGTGAATATGTTGTTGTTTAGAACAGCAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAGGTGAGTTTGAATATATTGAGTGAGTTATGTGGTTAATGAGTTCTGTAGTAGCTTATTGATTTAATTTGATGTGTTTTTTTAATGAGTTTTGTGGTAGTTTACTTTCTACAAAAGAAATTTTATTAGCTTTTGAGGTGTTTAGAGAGGAACAACTTTTTTTTGTAGTTTACTTACTACAAAAGAAATTTTACTCTTTTGTCTTTTCCTTTGTGTGTTTTCAATGTGTGAAATCTGTTTTTGATTCCATTGTTTTCTCCATCTTTTTTTATGTCTGCCTATGTTGTTGTTGTTTGAATCACCTCGCGAAAAGTTTTAGCTCATAGAGAGATTTTATTCTTAGTCTATGTCCCTAAAACTCTCAAAAAATGCACTGCTTTTGGAGGATGTGACATGCATCCATATATATCTTTGAAGAGTCCAAGCAAAAAAGCAACGAAAAATCAACAAGGGTTATGTTGGAATGGTAACTACTCTTTCATCCTTAATCGGAGGTCTCAAGTTCAAATCCTCTTCATTATGAAATCGCCTTTGCTAGGGATCGGAGCTTTAGTCTTGGAATTCCAATTCATAATGAGCATCTATAAATAAAAGTTGTTCGTGGATCAGTTACATTTACAACACTTCCACATGTGCGAGCCTCGTTTATTATTCCTTGGACCAAGATGGACTAAAGGAAAGCTTAACTTGGATTTCTACATTAGGGAAGAAAATTAGTCACTATTTGAGATCAGGTTAGGTTGTCTGCATCACATCACTTGGGGTGCAGTCTTCTCTGTTCCCCGCTAACACGGATGCTTTGTGCACCGGGTTGCCTTTCTATAATAGGATTGAACTTTAAATTAGCTAAAACACAATCTGACTATATATAAAAGCTCATATTTTATCTTTTTGTTTGGCCAAAGCACATTTTCTTTATGTTTGAAAACTTGTCTGTTATCATTGATTGAATTAGACTAAATCATGATCTTATTGCAGGTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTGGTAAGCCAGAATTTTCTTATGGTGGTCCTACAGTTGCTCAACAAATTTCTTTTGAAATGGGATATTTTTTTTAAGAAAATTGTGTAGGGATAAGTTTAAAATTTAGAGAACATTAGTTTTAGAGAAACCATAGTTTGCCTTAAAGGACAAATTATTTAGTATTGAAACTAAATGGAGCCTGAATTGTGTGGCCGAAAGGATACAGATGATTGATGTGGCGACCTAGTTAATTGAGATATATTTCAAAATTTGTCCCTTAAGACTACTTTAATTGAATCATCACTCTGGGTTAAATGCTTGCCTCCAGGGAGGATCTCAAAGAATTTGATGTTAAAAATTGCCTTGTATCTTTTTAGAGAAAGGTAACATGGTGAGTCTTTTTTCCATGTGGTGGCTCAAATTGGATACATTATGGAGTGGGACATCATGTGACGGGTTACTAGTGTATGATGTGTTAAGGGCTTATGTAATAACAAAATGAAAAACTTTGCTAAATTGTGTGCCAGAGTGAGAAACTTGCTTACAGCACAGTGAGCTCTGCAAATATATTCTTCAGTCTGGTAGAGAGAGGCCTACTTTGTTAACACCATGAAGTTCCCAAATTTATTGTTGAGTTCAAGCTTTTGAGCTGCATAACGACCATTGTTACACTTTTAGATACTAGTTTTTGTGTGAGTATTACATCAAATGTATGTGCTCTTTTCTAAATGTCTTTCTAGCCTATTTAACAATTATACATGTGCATTTTTCTCATTTTGAATCATGTTAAAACTCCAATTTTGGGGATGATTAGTTAGCTGTCTACATTTGTGTTTCATTTTCCAGCATTTCATTACAAAGCATGTTTGAACCGTATTTTGAAGATCTACCGATTTGGGAAAAACCATATTTTGAAGATTTGCTTGCTAACCACATGCAGGGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAATGTAAGTTAAGCCTTGCAGCATAGCTCTGGAAATTTTTAACCTTTTTCTATTCGCTATAAATATGTGGTATTTCTAGTTTACATCTGTTAAAAATGTCATTTCACTATATAGTTTCTCGACCAATATCTCCATCATCAACCCTTGTGGATATTTGTGATCTAATTCTTCTGCAGTTATATTTACTCCAAATAATTAAGATATTATTCTTTTTAGAATGGATGCTTGAAATAGTAAAAATTTTGAGCTTTGCCCTAAATGGTTCTGGATCATCATGCACTGTCAAATTTTGGAGTTGACACATTGGGTTTTGGTGATATACATTTTAAAGTATGGCAGTCATTAAAACATGAAACTGTATTAAATGGTGCAATATGTATTATATATTTTTAAGAATAAATGGAGCAGTATATTTTGTTGTCTTTTTATTATTATTTTGAGTTCATCACTGCATCTATTGACATTGAAAAAAAACGATTATTGTGAAGCTTAAAAGTCTGATGCAGTATTACAAGACAACATATTGACTTGAATATAGGCTTCCATCACTGGAAAGAACGTCCTAATAGAGTTTCAGTGGGATTAACTTTATCTCTGTGTAATTACAGTTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATC</genome_strand>
        <mrna_strand>AGAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACG............................................................................................................................................................................................................................................................CAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249278" ref_strand="+" ref_description="SGN-E249278 [cLEF-50-J8]">
      <seq>gaatcagtaggggtgtgcgcaagttagcaacgatgagtttgacgtctcattcttctactttcctcttaccaaatcttcccgccgacgacggacctgctctaacgtacgctctcgttatccttaaccaaagcctcccgaaattcactcctctgctttggaagcacgcaaaggttcatatttgtgctgacggtggagcgaatagggtgtttgatgaattgcctggcatgtttcctcatgaggaggcatctgaaattcgtaagaggtacaagccctatgctataaaaggagatatggattcaatcagaactgatgttcttgattattacagaggcctgggaaccaagataattgatgaatctcaagatcaagatactacagatcttaataaatgcgttacatatattcgtgactcactaaactcggaacatccaaatttgtgtattctagtcactggagcacttgggggaagatttgaccatgagatgggaaatattaatgtcatatgctgtttcccctccatgcggattattcttctctctgatgatagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="20151" stop="16251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19851" g_stop="19687" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19686" i_stop="19435" i_length="252">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19434" g_stop="19338" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="262" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19337" i_stop="18363" i_length="975">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18362" g_stop="18290" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="335" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18289" i_stop="17371" i_length="919">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.565" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17370" g_stop="17272" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="434" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17271" i_stop="16667" i_length="605">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16666" g_stop="16551" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="550" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E249278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19851" e_stop="19687"/>
          <exon e_start="19434" e_stop="19338"/>
          <exon e_start="18362" e_stop="18290"/>
          <exon e_start="17370" e_stop="17272"/>
          <exon e_start="16666" e_stop="16551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACGGTAATGGACTTGCGGCTCTTCGTTTTTTTTCAACGTTTTTCGCAGTTTTCTGTGTTGTTATAGTCTAAATATGGTATATGTGAAATGGTGATCTCTTCGTAAAATTATAATATTTAAGTTATTTAGCTTGAGAACTGGGTATCAATTTGTTCCTGATTCATTTTTTTTGAACTTTTTTTAAGTAGTGCATTTGGCTCTGGGATTTGTGTTTGTTTTTGTCTAATATGGTGAATATGTTGTTGTTTAGAACAGCAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAGGTGAGTTTGAATATATTGAGTGAGTTATGTGGTTAATGAGTTCTGTAGTAGCTTATTGATTTAATTTGATGTGTTTTTTTAATGAGTTTTGTGGTAGTTTACTTTCTACAAAAGAAATTTTATTAGCTTTTGAGGTGTTTAGAGAGGAACAACTTTTTTTTGTAGTTTACTTACTACAAAAGAAATTTTACTCTTTTGTCTTTTCCTTTGTGTGTTTTCAATGTGTGAAATCTGTTTTTGATTCCATTGTTTTCTCCATCTTTTTTTATGTCTGCCTATGTTGTTGTTGTTTGAATCACCTCGCGAAAAGTTTTAGCTCATAGAGAGATTTTATTCTTAGTCTATGTCCCTAAAACTCTCAAAAAATGCACTGCTTTTGGAGGATGTGACATGCATCCATATATATCTTTGAAGAGTCCAAGCAAAAAAGCAACGAAAAATCAACAAGGGTTATGTTGGAATGGTAACTACTCTTTCATCCTTAATCGGAGGTCTCAAGTTCAAATCCTCTTCATTATGAAATCGCCTTTGCTAGGGATCGGAGCTTTAGTCTTGGAATTCCAATTCATAATGAGCATCTATAAATAAAAGTTGTTCGTGGATCAGTTACATTTACAACACTTCCACATGTGCGAGCCTCGTTTATTATTCCTTGGACCAAGATGGACTAAAGGAAAGCTTAACTTGGATTTCTACATTAGGGAAGAAAATTAGTCACTATTTGAGATCAGGTTAGGTTGTCTGCATCACATCACTTGGGGTGCAGTCTTCTCTGTTCCCCGCTAACACGGATGCTTTGTGCACCGGGTTGCCTTTCTATAATAGGATTGAACTTTAAATTAGCTAAAACACAATCTGACTATATATAAAAGCTCATATTTTATCTTTTTGTTTGGCCAAAGCACATTTTCTTTATGTTTGAAAACTTGTCTGTTATCATTGATTGAATTAGACTAAATCATGATCTTATTGCAGGTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTGGTAAGCCAGAATTTTCTTATGGTGGTCCTACAGTTGCTCAACAAATTTCTTTTGAAATGGGATATTTTTTTTAAGAAAATTGTGTAGGGATAAGTTTAAAATTTAGAGAACATTAGTTTTAGAGAAACCATAGTTTGCCTTAAAGGACAAATTATTTAGTATTGAAACTAAATGGAGCCTGAATTGTGTGGCCGAAAGGATACAGATGATTGATGTGGCGACCTAGTTAATTGAGATATATTTCAAAATTTGTCCCTTAAGACTACTTTAATTGAATCATCACTCTGGGTTAAATGCTTGCCTCCAGGGAGGATCTCAAAGAATTTGATGTTAAAAATTGCCTTGTATCTTTTTAGAGAAAGGTAACATGGTGAGTCTTTTTTCCATGTGGTGGCTCAAATTGGATACATTATGGAGTGGGACATCATGTGACGGGTTACTAGTGTATGATGTGTTAAGGGCTTATGTAATAACAAAATGAAAAACTTTGCTAAATTGTGTGCCAGAGTGAGAAACTTGCTTACAGCACAGTGAGCTCTGCAAATATATTCTTCAGTCTGGTAGAGAGAGGCCTACTTTGTTAACACCATGAAGTTCCCAAATTTATTGTTGAGTTCAAGCTTTTGAGCTGCATAACGACCATTGTTACACTTTTAGATACTAGTTTTTGTGTGAGTATTACATCAAATGTATGTGCTCTTTTCTAAATGTCTTTCTAGCCTATTTAACAATTATACATGTGCATTTTTCTCATTTTGAATCATGTTAAAACTCCAATTTTGGGGATGATTAGTTAGCTGTCTACATTTGTGTTTCATTTTCCAGCATTTCATTACAAAGCATGTTTGAACCGTATTTTGAAGATCTACCGATTTGGGAAAAACCATATTTTGAAGATTTGCTTGCTAACCACATGCAGGGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAATGTAAGTTAAGCCTTGCAGCATAGCTCTGGAAATTTTTAACCTTTTTCTATTCGCTATAAATATGTGGTATTTCTAGTTTACATCTGTTAAAAATGTCATTTCACTATATAGTTTCTCGACCAATATCTCCATCATCAACCCTTGTGGATATTTGTGATCTAATTCTTCTGCAGTTATATTTACTCCAAATAATTAAGATATTATTCTTTTTAGAATGGATGCTTGAAATAGTAAAAATTTTGAGCTTTGCCCTAAATGGTTCTGGATCATCATGCACTGTCAAATTTTGGAGTTGACACATTGGGTTTTGGTGATATACATTTTAAAGTATGGCAGTCATTAAAACATGAAACTGTATTAAATGGTGCAATATGTATTATATATTTTTAAGAATAAATGGAGCAGTATATTTTGTTGTCTTTTTATTATTATTTTGAGTTCATCACTGCATCTATTGACATTGAAAAAAAACGATTATTGTGAAGCTTAAAAGTCTGATGCAGTATTACAAGACAACATATTGACTTGAATATAGGCTTCCATCACTGGAAAGAACGTCCTAATAGAGTTTCAGTGGGATTAACTTTATCTCTGTGTAATTACAGTTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCT</genome_strand>
        <mrna_strand>GAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACG............................................................................................................................................................................................................................................................CAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272278" ref_strand="-" ref_description="SGN-E272278 [cLEM-19-F19]">
      <seq>cccaaatgtcgatttagaagctattgctactatgacggacgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattagagaaattttggagaaggagaagaaggagaaaacattggcaattgcagagagcaggccatcaccggctttgcatagtagtgcagacattcgtcctcttaacatggatgattttaagtatgcacatgagcaggtatgtgccagtgtgtcatcagagtcttcaaatatgaatgagcttctccagtggaatgatttatatggagaaggaggatcaagaaagaaaacatctctcagttacttcatgtagaggagatatgtttaactatatagcaaggcattggtttatttgttttcctgttctgcaacccgcgataacagcattgcgtggataatccatttcaggttccccaaagtccaattggccttggcccctgacccccccttttgtatcatacttagttgataggatttttttccagttgcaagtcctgaagtctcacccaatttttctcatttttagctctcttctctgtacatatgagttgagtaatttaagaaaaagcatatcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="32250" stop="29737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31950" g_stop="31887" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31803" g_stop="31744" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="124" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31485" g_stop="31381" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="229" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30416" g_stop="30037" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="608" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E272278" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272278" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31950" e_stop="31887"/>
          <exon e_start="31803" e_stop="31744"/>
          <exon e_start="31485" e_stop="31381"/>
          <exon e_start="30416" e_stop="30037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGTCAGTCGCCTGAGTTCTGTCTTGTTGTTCTTTCAAAATTTGGTTGAATTGGTGACCTGGATCCACAACATACAAAAAATGCAACTATTACTAATTTTGTTTGGAAGTTGTTTAGTTATGCTTCATGATGTGTGTGTTTCATTTCGTGATGTTTGAAATTATTAGGTCATCATCAACTGCGAGGTGTCTTTACACTTTAATCTGCTAATCTTTCGATTTATTTTATTTTTTTTTTAAACTTTTGGGGCATGATTTCAGGAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAGGTACAGTAGCACATACTGTGATTTGTTAAGATAATTTTTATGTGCTGCATTCTACTTCCTTTGTGAAATTTACTTGGGGTTCAGGAGAAAGGTTGGTAACTTTATTTATTGCCAAGTAGTGAACTTGGGGAGTTGGGACTCTCATGGATCCTTTAGGATGTTACCTGTTGCTGATCGTCAACATTAGATAGATATATACTCAAGTTTAAATTTTATTTATATATTTGTTGGTGGGAGATACAGATTTGGATTTGGGAGCTGGCTTCATAAAAATAAGGGGTAAATCATATTAACTGGGTGAGTGTTGTTGGCTCTCACGTCTTATTACATGCTACTGGTGAAATAGTTCAAACGGAATTTGGTTTATGTGGATAGGGATTCTGTATCTGCACTGGCTGGCCCTTAATCTGACAAGCGAAATATAGAGATACTCCAATACTCCTCTTTTACAATGGTGGTTTTTTAATGATGTGGTGCCACGTTATAAACCTTGTGTCCTAGTTTATTAAGCTAATTGCTTTGGTCCCTATTACAGCATCACAATCTTTGTAATGGTGCAATGCCTGCTAATTGTGTGTATAGAAGTGACTAAGAGGATGTCCATTGGGTAAAGCCATGTTGGAGGTCCGAGGAACTGTGATACTTGGACCTACGAGCTCAAATGCCATTCTTTAGGCAACTAAACATATTGTGGTGCCTCTTTTTGGTTAATTCTAGAGCCTTCCACATAAACCTGAACTCATCTCATCTTATCCTTGTGATTATGCTTGCACGCTCCAGAAGAGCTTATCTGTAATGAAGAAAAGAAGTTGAGATAATGCGATCAAATGACCGTCACTCTTGATGACTCCATAACAGCAGCTAATTTGATAACGTCAATCAAATATCTTGCTGCATACGTGATGTTGGATGTTGATATCTTTTAGTAGATTCATGACTTGTTTGTGTGTGTTGACAAATGCAGGTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGCATATCCTAA</genome_strand>
        <mrna_strand>CCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG..................................................................................................................................................................................................................................................................GAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAA-TTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGCATATCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374963" ref_strand="+" ref_description="SGN-E374963 [TUS-15-M13](-)">
      <seq>acgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattaaagaaattttggagaaggagaagaaggagaaaacattggcaattgcaaagagcaggccatccccggctttgcatagtagtgcagacattcgtcctcttaacatggatgattttaagtatgcacatgagcaggtatgtgccagtgtgtcatcagagtcttcaaatatgaatgagcttctccagtggaatgatttatatggagaaggaggatcaagaaagaaaacatctttcagttacttcatgtagaggagatatgtttaactatatagcaaggcattggtttatttgttttcctgttttgcaacccgcgataacagcattgggtggataatccatttcaggttccccaaagtccaattggccttggcccctgacccccccttttgtatcatacttagttgataggatttttttccagttgcaagtcctgaagtctcacccaatttttttcatttttagctcttttctctgtacatatgagttgagtaatttaagaaaaaggcatatccttatataataaaaaaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="32212" stop="29734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31912" g_stop="31887" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.580" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31803" g_stop="31744" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="86" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258">
            <donor d_prob="0.743" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31485" g_stop="31381" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="191" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30416" g_stop="30046" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="561" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="587"/>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E374963" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31912" e_stop="31887"/>
          <exon e_start="31803" e_stop="31744"/>
          <exon e_start="31485" e_stop="31381"/>
          <exon e_start="30416" e_stop="30046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGTCAGTCGCCTGAGTTCTGTCTTGTTGTTCTTTCAAAATTTGGTTGAATTGGTGACCTGGATCCACAACATACAAAAAATGCAACTATTACTAATTTTGTTTGGAAGTTGTTTAGTTATGCTTCATGATGTGTGTGTTTCATTTCGTGATGTTTGAAATTATTAGGTCATCATCAACTGCGAGGTGTCTTTACACTTTAATCTGCTAATCTTTCGATTTATTTTATTTTTTTTTTAAACTTTTGGGGCATGATTTCAGGAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAGGTACAGTAGCACATACTGTGATTTGTTAAGATAATTTTTATGTGCTGCATTCTACTTCCTTTGTGAAATTTACTTGGGGTTCAGGAGAAAGGTTGGTAACTTTATTTATTGCCAAGTAGTGAACTTGGGGAGTTGGGACTCTCATGGATCCTTTAGGATGTTACCTGTTGCTGATCGTCAACATTAGATAGATATATACTCAAGTTTAAATTTTATTTATATATTTGTTGGTGGGAGATACAGATTTGGATTTGGGAGCTGGCTTCATAAAAATAAGGGGTAAATCATATTAACTGGGTGAGTGTTGTTGGCTCTCACGTCTTATTACATGCTACTGGTGAAATAGTTCAAACGGAATTTGGTTTATGTGGATAGGGATTCTGTATCTGCACTGGCTGGCCCTTAATCTGACAAGCGAAATATAGAGATACTCCAATACTCCTCTTTTACAATGGTGGTTTTTTAATGATGTGGTGCCACGTTATAAACCTTGTGTCCTAGTTTATTAAGCTAATTGCTTTGGTCCCTATTACAGCATCACAATCTTTGTAATGGTGCAATGCCTGCTAATTGTGTGTATAGAAGTGACTAAGAGGATGTCCATTGGGTAAAGCCATGTTGGAGGTCCGAGGAACTGTGATACTTGGACCTACGAGCTCAAATGCCATTCTTTAGGCAACTAAACATATTGTGGTGCCTCTTTTTGGTTAATTCTAGAGCCTTCCACATAAACCTGAACTCATCTCATCTTATCCTTGTGATTATGCTTGCACGCTCCAGAAGAGCTTATCTGTAATGAAGAAAAGAAGTTGAGATAATGCGATCAAATGACCGTCACTCTTGATGACTCCATAACAGCAGCTAATTTGATAACGTCAATCAAATATCTTGCTGCATACGTGATGTTGGATGTTGATATCTTTTAGTAGATTCATGACTTGTTTGTGTGTGTTGACAAATGCAGGTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGC</genome_strand>
        <mrna_strand>ACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAAAGAAATTTTGGAGAAGGAGAAGAAG..................................................................................................................................................................................................................................................................GAGAAAACATTGGCAATTGCAAAGAGCAGGCCATCCCCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTTTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTTTGCAACCCGCGATAACAGCATTGGGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTT-TCATTTTTAGCTCTTTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374964" ref_strand="+" ref_description="SGN-E374964 [TUS-15-M13]">
      <seq>tcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaaggaagaattagccccaaatgtcgatttagaagctattgctactatgacggacgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattagagaaattttggagaaggagaagaaggagaaaacattggcaattgcagagagcaggccatcaccggctttgcatagtagtgcagacattcgtcctcttaacatggatgattttaagtatgcacatgagcaggtatgtgccagtgtgtcatcagagtcttcaaatatgaatgagctttttcagtggaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="32864" stop="30056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32564" g_stop="32485" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="265" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32025" g_stop="31887" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="404" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31803" g_stop="31744" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="464" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31485" g_stop="31381" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="569" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30416" g_stop="30356" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="630" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E374964" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32564" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31887"/>
          <exon e_start="31803" e_stop="31744"/>
          <exon e_start="31485" e_stop="31381"/>
          <exon e_start="30416" e_stop="30356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGTCAGTCGCCTGAGTTCTGTCTTGTTGTTCTTTCAAAATTTGGTTGAATTGGTGACCTGGATCCACAACATACAAAAAATGCAACTATTACTAATTTTGTTTGGAAGTTGTTTAGTTATGCTTCATGATGTGTGTGTTTCATTTCGTGATGTTTGAAATTATTAGGTCATCATCAACTGCGAGGTGTCTTTACACTTTAATCTGCTAATCTTTCGATTTATTTTATTTTTTTTTTAAACTTTTGGGGCATGATTTCAGGAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAGGTACAGTAGCACATACTGTGATTTGTTAAGATAATTTTTATGTGCTGCATTCTACTTCCTTTGTGAAATTTACTTGGGGTTCAGGAGAAAGGTTGGTAACTTTATTTATTGCCAAGTAGTGAACTTGGGGAGTTGGGACTCTCATGGATCCTTTAGGATGTTACCTGTTGCTGATCGTCAACATTAGATAGATATATACTCAAGTTTAAATTTTATTTATATATTTGTTGGTGGGAGATACAGATTTGGATTTGGGAGCTGGCTTCATAAAAATAAGGGGTAAATCATATTAACTGGGTGAGTGTTGTTGGCTCTCACGTCTTATTACATGCTACTGGTGAAATAGTTCAAACGGAATTTGGTTTATGTGGATAGGGATTCTGTATCTGCACTGGCTGGCCCTTAATCTGACAAGCGAAATATAGAGATACTCCAATACTCCTCTTTTACAATGGTGGTTTTTTAATGATGTGGTGCCACGTTATAAACCTTGTGTCCTAGTTTATTAAGCTAATTGCTTTGGTCCCTATTACAGCATCACAATCTTTGTAATGGTGCAATGCCTGCTAATTGTGTGTATAGAAGTGACTAAGAGGATGTCCATTGGGTAAAGCCATGTTGGAGGTCCGAGGAACTGTGATACTTGGACCTACGAGCTCAAATGCCATTCTTTAGGCAACTAAACATATTGTGGTGCCTCTTTTTGGTTAATTCTAGAGCCTTCCACATAAACCTGAACTCATCTCATCTTATCCTTGTGATTATGCTTGCACGCTCCAGAAGAGCTTATCTGTAATGAAGAAAAGAAGTTGAGATAATGCGATCAAATGACCGTCACTCTTGATGACTCCATAACAGCAGCTAATTTGATAACGTCAATCAAATATCTTGCTGCATACGTGATGTTGGATGTTGATATCTTTTAGTAGATTCATGACTTGTTTGTGTGTGTTGACAAATGCAGGTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATT</genome_strand>
        <mrna_strand>TCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG..................................................................................................................................................................................................................................................................GAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTTTTCAGTGGAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247100" ref_strand="+" ref_description="SGN-E247100 [cLEF-41-L12]">
      <seq>agtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaaggaagaattagccccaaatgtcgatttagaagctattgctactatgacggacgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattagagaaattttggagaaggagaagaaggagaaaacattggcaattgcagagagcaggccatcaccggctttgcatagtagtgcagacattcgtcctcttaacatggatgattttaagtatgcacatgagcaggtatgtgccagtgtgtcatcagagtcttcaaatatgaatgagcttctccagtggaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="32849" stop="30056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32549" g_stop="32485" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="250" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32025" g_stop="31887" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="389" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31803" g_stop="31744" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="449" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31485" g_stop="31381" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="554" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30416" g_stop="30356" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="615" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E247100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32549" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31887"/>
          <exon e_start="31803" e_stop="31744"/>
          <exon e_start="31485" e_stop="31381"/>
          <exon e_start="30416" e_stop="30356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGTCAGTCGCCTGAGTTCTGTCTTGTTGTTCTTTCAAAATTTGGTTGAATTGGTGACCTGGATCCACAACATACAAAAAATGCAACTATTACTAATTTTGTTTGGAAGTTGTTTAGTTATGCTTCATGATGTGTGTGTTTCATTTCGTGATGTTTGAAATTATTAGGTCATCATCAACTGCGAGGTGTCTTTACACTTTAATCTGCTAATCTTTCGATTTATTTTATTTTTTTTTTAAACTTTTGGGGCATGATTTCAGGAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAGGTACAGTAGCACATACTGTGATTTGTTAAGATAATTTTTATGTGCTGCATTCTACTTCCTTTGTGAAATTTACTTGGGGTTCAGGAGAAAGGTTGGTAACTTTATTTATTGCCAAGTAGTGAACTTGGGGAGTTGGGACTCTCATGGATCCTTTAGGATGTTACCTGTTGCTGATCGTCAACATTAGATAGATATATACTCAAGTTTAAATTTTATTTATATATTTGTTGGTGGGAGATACAGATTTGGATTTGGGAGCTGGCTTCATAAAAATAAGGGGTAAATCATATTAACTGGGTGAGTGTTGTTGGCTCTCACGTCTTATTACATGCTACTGGTGAAATAGTTCAAACGGAATTTGGTTTATGTGGATAGGGATTCTGTATCTGCACTGGCTGGCCCTTAATCTGACAAGCGAAATATAGAGATACTCCAATACTCCTCTTTTACAATGGTGGTTTTTTAATGATGTGGTGCCACGTTATAAACCTTGTGTCCTAGTTTATTAAGCTAATTGCTTTGGTCCCTATTACAGCATCACAATCTTTGTAATGGTGCAATGCCTGCTAATTGTGTGTATAGAAGTGACTAAGAGGATGTCCATTGGGTAAAGCCATGTTGGAGGTCCGAGGAACTGTGATACTTGGACCTACGAGCTCAAATGCCATTCTTTAGGCAACTAAACATATTGTGGTGCCTCTTTTTGGTTAATTCTAGAGCCTTCCACATAAACCTGAACTCATCTCATCTTATCCTTGTGATTATGCTTGCACGCTCCAGAAGAGCTTATCTGTAATGAAGAAAAGAAGTTGAGATAATGCGATCAAATGACCGTCACTCTTGATGACTCCATAACAGCAGCTAATTTGATAACGTCAATCAAATATCTTGCTGCATACGTGATGTTGGATGTTGATATCTTTTAGTAGATTCATGACTTGTTTGTGTGTGTTGACAAATGCAGGTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATT</genome_strand>
        <mrna_strand>AGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG..................................................................................................................................................................................................................................................................GAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204853" ref_strand="+" ref_description="SGN-E204853 [cLEC-14-J13]">
      <seq>tcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaaggaagaattagccccaaatgtcgatttagaagctattgctactatgacggacgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattagagaaattttggagaaggagaagaaggagaaaacattggcaattgcagagagcaagccatcaccggctttgcatagtagtgcagacattcgtcctcttaacatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="32864" stop="31104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32564" g_stop="32485" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="265" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32025" g_stop="31887" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="404" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31803" g_stop="31744" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="464" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31485" g_stop="31404" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="546" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E204853" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32564" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31887"/>
          <exon e_start="31803" e_stop="31744"/>
          <exon e_start="31485" e_stop="31404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGTCAGTCGCCTGAGTTCTGTCTTGTTGTTCTTTCAAAATTTGGTTGAATTGGTGACCTGGATCCACAACATACAAAAAATGCAACTATTACTAATTTTGTTTGGAAGTTGTTTAGTTATGCTTCATGATGTGTGTGTTTCATTTCGTGATGTTTGAAATTATTAGGTCATCATCAACTGCGAGGTGTCTTTACACTTTAATCTGCTAATCTTTCGATTTATTTTATTTTTTTTTTAAACTTTTGGGGCATGATTTCAGGAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATG</genome_strand>
        <mrna_strand>TCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG..................................................................................................................................................................................................................................................................GAGAAAACATTGGCAATTGCAGAGAGCAAGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268339" ref_strand="+" ref_description="SGN-E268339 [cLEI-13-I5]">
      <seq>ggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaaggaagaattagccccaaatgtcgatttagaagctattgctactatgacggacgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattagagaaattttggagaaggagaagaaggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="32854" stop="31443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32554" g_stop="32485" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="255" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32025" g_stop="31887" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="394" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31803" g_stop="31744" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="454" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31485" g_stop="31479" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="461" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E268339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32554" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31887"/>
          <exon e_start="31803" e_stop="31744"/>
          <exon e_start="31485" e_stop="31479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGTCAGTCGCCTGAGTTCTGTCTTGTTGTTCTTTCAAAATTTGGTTGAATTGGTGACCTGGATCCACAACATACAAAAAATGCAACTATTACTAATTTTGTTTGGAAGTTGTTTAGTTATGCTTCATGATGTGTGTGTTTCATTTCGTGATGTTTGAAATTATTAGGTCATCATCAACTGCGAGGTGTCTTTACACTTTAATCTGCTAATCTTTCGATTTATTTTATTTTTTTTTTAAACTTTTGGGGCATGATTTCAGGAGAAAA</genome_strand>
        <mrna_strand>GGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG..................................................................................................................................................................................................................................................................GAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335282" ref_strand="+" ref_description="SGN-E335282 [cTOE-1-O16]">
      <seq>ttaccttttaatgacattggggccgttggaaacctgtcaaggacacctctgaaagaacctggtgatgcctgcctcttcagcgacccagaattgttttgtaaaggaccagctgacccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctacctgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaaggaagaattagccccaaatgtcgatttagaagctattgctactatgaccgacgggtattcanggagtgatttgaagaattngtgtgtgagcgctgcgcattgccctattagagaaattttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33330" stop="31457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33030" g_stop="32921" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="0.87"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="243" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="327" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="512" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32025" g_stop="31887" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="651" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.580" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31803" g_stop="31757" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="698" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E335282" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33030" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31887"/>
          <exon e_start="31803" e_stop="31757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTA-CTTTTAATGACATTGGGG-CGTTGGAAA-CTGTCAAGGATA-CTCTGAAAGAA-CTGGTGATG-CTGCCTCTTCAGCGAC-CAGAATTGTTTTGTAAAGGAC-AGCTGA-CCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTA-CTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGA</genome_strand>
        <mrna_strand>TTACCTTTTAATGACATTGGGGCCGTTGGAAACCTGTCAAGGACACCTCTGAAAGAACCTGGTGATGCCTGCCTCTTCAGCGACCCAGAATTGTTTTGTAAAGGACCAGCTGACCCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACCTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACCGACGGGTATTCANGGAGTGATTTGAAG...................................................................................AATTNGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687916" ref_strand="+" ref_description="SGN-E687916 [T3_tus_81_K02]">
      <seq>ccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaaggtactactgatgtggtttctgccatttcttttttgacttgcccttcttaaaatggttgacaactttttcttgccagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaaggaagaattagccccaaatgtcgatntagaagctattgctactatgacggacgggtattcagggagtgatttgaagaatttgtgtgtgagcgctgcgcattgccctattagagaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33349" stop="31459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33049" g_stop="32921" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32767" g_stop="32485" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="412" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="597" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32025" g_stop="31887" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="736" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31803" g_stop="31759" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="781" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E687916" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33049" e_stop="32921"/>
          <exon e_start="32767" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31887"/>
          <exon e_start="31803" e_stop="31759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGGTCTGGATCAATATTACTTGTACTGCATTTATTAATCCATGTTGCATATCATACTTACTGCCACTTTGAATTTCCAATCCCAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTG</genome_strand>
        <mrna_strand>CCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATNTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG...................................................................................AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264841" ref_strand="+" ref_description="SGN-E264841 [cLEG-71-C20]">
      <seq>tttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttnaattgggacggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttccccgtaggttaatggtaaacttgccagatgcttcaaatagggagaaaattttgggagttattttggcgaanggagaattagccccaaatgtcgatttagaagctattgctactatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33522" stop="31616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33222" g_stop="33204" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="199" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="322" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="406" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="592" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32025" g_stop="31916" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="702" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E264841" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33222" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="31916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTT-AATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGA</genome_strand>
        <mrna_strand>TTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTNAATTGGGACGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG...........................................................................................................GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAANGGAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328239" ref_strand="+" ref_description="SGN-E328239 [cTOC-21-F1]">
      <seq>cgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaaggtactactgatgtggtttctgccatttcttttttgacttgcccttcttaaaatggttgacaactttttcttgccagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagttattaggaggcttcccccgtaggtaatggtaaacttgccagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33348" stop="31701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33048" g_stop="32921" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32767" g_stop="32485" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="411" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32317" g_stop="32133" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="597" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32025" g_stop="32001" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="621" r_length="24" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E328239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33048" e_stop="32921"/>
          <exon e_start="32767" e_stop="32485"/>
          <exon e_start="32317" e_stop="32133"/>
          <exon e_start="32025" e_stop="32001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTT-CCCCGTAGGTAAACTTAAATTTAATTATTTTTTTGTGATTTATGTAACTGATTGATTGATCATGATGTCTCAAGTGTTTTATGGTAGTGATGCCGTAAGTGTACCTTTGATGCAGGTTAATGGTAAACTTGCCAGATGCT</genome_strand>
        <mrna_strand>CGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCCGTAG...........................................................................................................G-TAATGGTAAACTTGCCAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262375" ref_strand="+" ref_description="SGN-E262375 [cLEG-56-G23]">
      <seq>gaaattctatgcataaaggatcaagcactgacaaatgaaagtgttgaaaagataatcggctgggctttgagtcatcaccttatgcataaatctgagtctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcagggtgaaacgaagagtttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatagaccctttgacctggatgaagcagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33931" stop="31852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33631" g_stop="33592" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33499" g_stop="33403" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="137" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="207" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="387" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="510" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="594" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32317" g_stop="32152" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="760" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E262375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33631" e_stop="33592"/>
          <exon e_start="33499" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAAGTAAGTAATTTCTCATAGTTTTAGGCCTTAAAGATTTGAAATGCTTTAATTGATCATAATAGTCTGTCATGTTTATTGATGTGGTTGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTA</genome_strand>
        <mrna_strand>GAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA............................................................................................GTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211180" ref_strand="+" ref_description="SGN-E211180 [cLEC-70-M24]">
      <seq>ttgaaattctatgcataaaggatcaagcactgacaaatgaaagtgttgaaaagataatcggctgggctttgagtcatcaccttatgcataaatctgagtctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcagggtgaaacgaagagtttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgttgcaacaatagaccctttgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33933" stop="31866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33633" g_stop="33592" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33499" g_stop="33403" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="139" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="209" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="389" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="512" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="596" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32317" g_stop="32166" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="747" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E211180" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33633" e_stop="33592"/>
          <exon e_start="33499" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAAGTAAGTAATTTCTCATAGTTTTAGGCCTTAAAGATTTGAAATGCTTTAATTGATCATAATAGTCTGTCATGTTTATTGATGTGGTTGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCT</genome_strand>
        <mrna_strand>TTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA............................................................................................GTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGTTGCAAC-AATAGACCCTTTGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247795" ref_strand="+" ref_description="SGN-E247795 [cLEF-42-J22]">
      <seq>tccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcagggtgaaacgaagagtttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaacaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33575" stop="31878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33413" g_stop="33403" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="81" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="261" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="384" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="468" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32317" g_stop="32178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="608" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E247795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33413" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAG</genome_strand>
        <mrna_strand>TCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266403" ref_strand="+" ref_description="SGN-E266403 [cLEI-3-B11]">
      <seq>tgctgaaaatgagttcgcgaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttgggaagacgagaaaatccgggagagcatgaagctatgcggaagatgaagaatgaattcatggttaattgggatggtttgcgtacaaaagataaggaacgggttcttgtacttgctgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33392" stop="31883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33092" g_stop="32921" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="379" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32317" g_stop="32183" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="514" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E266403" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33092" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACA</genome_strand>
        <mrna_strand>TGCTGAAAATGAGTTCGCGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259574" ref_strand="+" ref_description="SGN-E259574 [cLEG-42-H8]">
      <seq>gaaattctatgcataaaggatcaagcactgacaaatgaaagtgttgaaaagataatcggctgggctttgagtcatcaccttatgcataaatctgagtctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcagggtgaaacgaagagtttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33931" stop="32171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33631" g_stop="33592" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33499" g_stop="33403" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="137" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="207" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="387" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="510" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="594" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32317" g_stop="32300" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="612" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E259574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33631" e_stop="33592"/>
          <exon e_start="33499" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAAGTAAGTAATTTCTCATAGTTTTAGGCCTTAAAGATTTGAAATGCTTTAATTGATCATAATAGTCTGTCATGTTTATTGATGTGGTTGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGA</genome_strand>
        <mrna_strand>GAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA............................................................................................GTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214802" ref_strand="+" ref_description="SGN-E214802 [cLEC-79-N15]">
      <seq>tgtcaaggtgttgaaaagataatcggctgggctttgagtcatcaccttatgcataaatctgagtctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcagggtgaaacgaagagtttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaagtggacagcatgttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33806" stop="32171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33506" g_stop="33403" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="174" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="354" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="477" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="561" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32317" g_stop="32300" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="579" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E214802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33506" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTGGGA</genome_strand>
        <mrna_strand>TGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAA.......................................................................................................................................................................GTGGACAGCATGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206905" ref_strand="+" ref_description="SGN-E206905 [cLEC-33-L22]">
      <seq>ttgaaattctatgcataaaggatcaagcactgacaaatgaaagtgttgaaaagaggatcggctgggctttgagtcatcaccttatgcataaatctgagtctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcagggtgaaacgaagagtttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaaatagctccgagtgttattttcgttgacgaggtggacagcatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33933" stop="32171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33633" g_stop="33592" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33499" g_stop="33403" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="139" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="209" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="389" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="512" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32568" g_stop="32485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="596" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32317" g_stop="32303" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="611" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E206905" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33633" e_stop="33592"/>
          <exon e_start="33499" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32485"/>
          <exon e_start="32317" e_stop="32303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAAGTAAGTAATTTCTCATAGTTTTAGGCCTTAAAGATTTGAAATGCTTTAATTGATCATAATAGTCTGTCATGTTTATTGATGTGGTTGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTTGGTGACATTTTCTGCACAATGCATCCATTTTTGCCCCAAATTTATTTCCGAAATAGATGACAGTTTGATTTCCCTTTCACATCCATACGAAGTTATTAAGTTTTCTTCTTTATGTCATTATTGTTTATATTTTCCTTTTCCATCCATTTCTTCATGTCTACTAGGTGGACAGCATGTTG</genome_strand>
        <mrna_strand>TTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA............................................................................................GTGTTGAAAAGAGGATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG.......................................................................................................................................................................GTGGACAGCATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262778" ref_strand="+" ref_description="SGN-E262778 [cLEG-63-H4]">
      <seq>tttgaagaaatccctcaaggacgtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcaaggatactctgaaagaactggtgatgctgcctcttcagcgaccagaattgttttgtaaaggacagctgaccaagccttgcaagggaatattgctctttggacctccaggtactggtaaaacaatgcttgcgaaagctgttgctactgaggctggtgcaaactttatcaacatatcaatgtcaagcattacatccaagtggttcggtgaaggggagaagtatgtcaaagcagtcttcacattagctagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33522" stop="32215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33222" g_stop="33204" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33100" g_stop="32921" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="199" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32767" g_stop="32645" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="322" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32568" g_stop="32515" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="376" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E262778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33222" e_stop="33204"/>
          <exon e_start="33100" e_stop="32921"/>
          <exon e_start="32767" e_stop="32645"/>
          <exon e_start="32568" e_stop="32515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGGTAAAAGGAATTTGCTTTATGTTGAAGTCCATTGGCATCTTCATTACCCCATCTCTCTGGGTTTTTTTTTTTTTGGGTTTGGGGGAGGTTTAGGTTATTAAAGCCTGTTCATCAAGTATGCACTTGTGTTTCTGAATAAGATGGTATCTGCAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAA</genome_strand>
        <mrna_strand>TTTGAAGAAATCCCTCAAG.......................................................................................................GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG.........................................................................................................................................................CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG............................................................................TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262260" ref_strand="+" ref_description="SGN-E262260 [cLEG-56-G24]">
      <seq>ctatgcataaaggatcgagcactgacaaatgaaagtgctgaaaagataatcggctgggctttgagtcgtcaccttatgcataaatctgactctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatgtttcaaggcattcgaggtgaaacgaagagtttgaagaaatccctcaaggaggtggttactgaaaatgagttcgagaagaaactacttggggatgtaattccgccgagtgatattggtgttacttttaatgacattggggcgttggaaactgtcatggatactctgaaagaactggtgatgctgcctcatcaacgaccagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="33925" stop="32646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33625" g_stop="33592" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33499" g_stop="33403" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="131" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33273" g_stop="33204" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="201" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33100" g_stop="32946" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="356" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E262260" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33625" e_stop="33592"/>
          <exon e_start="33499" e_stop="33403"/>
          <exon e_start="33273" e_stop="33204"/>
          <exon e_start="33100" e_stop="32946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGCATAAAGGATCAAGCACTGACAAATGAAAGTAAGTAATTTCTCATAGTTTTAGGCCTTAAAGATTTGAAATGCTTTAATTGATCATAATAGTCTGTCATGTTTATTGATGTGGTTGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGTGAAGGCTCTAGTTATTTTTCTCTGACTGTACAAATTTACTTATTTAAAGTTGCTTCTTATTCTGAATTTTCTGAACTGTGAGATGGGTGCTTGATTTTCAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATT</genome_strand>
        <mrna_strand>CTATGCATAAAGGATCGAGCACTGACAAATGAAA............................................................................................GTGCTGAAAAGATAATCGGCTGGGCTTTGAGTCGTCACCTTATGCATAAATCTGACTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCGAGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG.......................................................................................................GAGGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCATGGATACTCTGAAAGAACTGGTGATGCTGCCTCATCAACGACCAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330094" ref_strand="+" ref_description="SGN-E330094 [cTOD-5-I22]">
      <seq>tcttgttttgttcatcaaagacattgagaagtctatggtgggtaatcctgaggcctatgctgctttcaagattaagctcgagcatttgccagagaatgttgttgccatagcttcccatgcccagtcggacagccgaaaggagaaatcgcatcctggtggcttgctatttacaaaatttggaagtaaccaaacagcattgcttgaccttgccttcccagataattttggtaggttgcatgatagaagcaaagaaacccccaagacgatgaagcagctcacacgactgtttcccaacaaagttaccatacagatccctcaggacgaaaccttattatccgactggaagcaaaagttagatcgggatatggaaactatgaaatctcagtcaaacattgcaagcattcgcaatgttttgaatcgattcaaaattaattgcgatgaccttgaaattctatgcataaaggatcaagcactgacaaatgaaagtgttgaaaagataatcggctgggctttgagtcatcaccttatgcataaatctgagtctgctatgaaagagacgaagctagctatctccagtgaaagcattgcttatgggctcagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="36920" stop="32952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36620" g_stop="36476" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36475" i_stop="36391" i_length="85">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36390" g_stop="36319" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="217" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36318" i_stop="34350" i_length="1969">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34349" g_stop="34248" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="319" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34247" i_stop="34173" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34172" g_stop="34083" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="409" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34082" i_stop="33668" i_length="415">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33667" g_stop="33592" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="485" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33499" g_stop="33403" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="582" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33273" g_stop="33252" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="604" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E330094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36620" e_stop="36476"/>
          <exon e_start="36390" e_stop="36319"/>
          <exon e_start="34349" e_stop="34248"/>
          <exon e_start="34172" e_stop="34083"/>
          <exon e_start="33667" e_stop="33592"/>
          <exon e_start="33499" e_stop="33403"/>
          <exon e_start="33273" e_stop="33252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAAGTATGCAAGGCATAGTTATTCTGCATTTCTTTCTGATAAAAAATTGCCTTGCGATGCTGATAGCCTTACTTTTTATCTGTTACAGTCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCAGTATGTAACACTTTCTCTTCCTTTTCCTTTTGTTTTTGGTTTTCCCTTTTCTTGTTCTCAGTGTTGTACCTAAGAACTATGAGGTTGTGAGGCACTTTAGCTGCACGTCTTAGGGGGAGTTTGTCAATGTGCTAATAGCCTCATATGGATTTTCTTTATTTTGTTATTACCCATGACTGACACTAGGAGTCTCCAAGCCTTTTACATTTGGTCATTTACGAACTGCATAGTTAAAGAGCATACAATACAAAAGAGACTCCTTTTCCTCAATATGCTGAGATGTAGGAGTTGTCAAATGATTGGGTGTCAAATTGGGTTTTAAAAATATGGTGCCAGCTTTAATCCACAAAAACCCATTCCTTGTACTTCATTCTTATACAATACATTCTTCTCTACTCTAATGGGTCTACCGCTCTACTCTCCACTTAAATACCAGACTTCTGTCTGTGGTTGGGTTCGAGCCCATAACATGCACCTAATTACATATCACCCACTGCACTCTTACCACTAGACCAAAGCCCTCGGAGCCGATTCCTGTCCATATTTTATATTTCTCAATAACCCAAACTGCATTTACCCATCTGTGTCTCTGTCCTCAAGTAATTATTTTTTTAACACACACATGTAGATACATATATATGATGTGTCTACACTTGCAAATGGTTTCATATAATTATTTGAAAGTATTTTTGTGACAAGTCAAAAAATTCAAATTTATCTTCTATTTTCCTGTGGCTGACATTAAGTTCTGAAAAGTATTACACTCATATGTTTGCATGGTTGAGCATACAACCCAAACTCTTTCATACATTACATGAAATTCTCAGGCATAGTGTCAAATTTGTGGATTAGATTGGGTATCGGCAGGAGTAGATTGGTTTTAGTAATCAGTACAGACATTACCAAGCCACCTGACTCCCATTTAATCCATATCCTTGTTCTTTTTTCTTATACAGCACAGATATTTCTGTTCTTACCCATCTTATACTAGGCATACATTTCTACTCTTACTCATATCTCTTTATCTTTCAATCACTGAAGCTACTACCACCCACCCAGTGTTGAGTGTTGTCAATAGCAGTAAACTCAAAAGCTCTTGAGATCACTAAGGGAATTAAGAGCAAAAAAAGCGTGAGGCCGTGAGCTTTAATGAAAAACACGCGAAGGGAGAAAAAAGTACAAATATATATGTTTAATTCAAGACTAATGATTATAAGCTTGAATGACAAATATATGAACAAACAAATCGACTTTTTTTTACAATAAATTGAAATATCAATTGTTTAGTGTTGCCTCTTCAGAAGAGTCTTATTTCAAGGAAAAGCATGCCTCGGAACACTGATGATGACAATGAAGTGCACATTAAGTGAGGCAAAGCACGCCTTTGACAACACTGCCACCACCTACCAATTTCCTCTAGAAATTTAATTTCATGTGTGGTGTTTGTAGTAGATGCATGTGCATGATGTGTCTGTAAGTATGAGGGAGGGGAGTTGCAGAATGTAAGGTTACAGAGAGGGACAGGAAGGAAATAGTGTAGTTTTTATTTTTAGAACGAAAAATACCTAGTTTCTTTTGTGGGAGTTGTTTGGGAAGGGAGTTACAGAATGAAAGGTTACAAGGAGGGACAGGAAGGAAATGTGTAGTTTTTATTTTAGAACCAAAAATACGTAGTTTCTTTTGCTGGAGTTGTTTGGGCATTAGAGGTGGCAAGTGTGGCGTACAAAGAAACTGACTAGAGCATGTTATTTAATGTTTGTGGCTTTTTCCTTGATCAAATCCTTTAACTTCCATTCTTTCCCAACCATCCCCCAACAGAAACTGTTCATCTCTTAAACCCACAGGCAACTCAGTAAAAATGGATTTTGAAACCTATGCTTAACCGTTTTTATAAACTAAAGAGGCCTAGGGGCTTGGGTTTACCTGCAAAATGGTTGATATTACTGCATTTAATGTCATTCCTTTCCAGGATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAGGTAACTTTCAGTTTATGTTTAGACGGCCAACTGCATTAATTTTGATGCAAGCATTTAATATAGGTTTTGTGGCAGGACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAATGTGAGTGCTATTTACTTACCATCTAAGGGGAAAAAAACTTTTTCTTAGATCCCTTCAGTTTTCTCCATTTGTGGATTCTGTAAGCCCATATGAAATATTCTATGTTCTGTGAAATTCTAATTACTTACATAGGCAACACCATGGACATTTCTTTAGCACGTCAATTTTCATTTTCGTACTGTATTATACTGGGTTCACCCGAAAGTCTAAAACCACCTTCTCATCAGTGTATCCCTTGTGAGAAGAGGCAGTTAATTTTGTTTGACCACTCATGGATGATGGACCTAAAGTTGTAAATAATGCTTACAATTGACAGTTATGGTGATTGTGTAAGAAAGAAGAGTATGATGCTTATGAAATTGCATCCTCAATGAACTGATTTATAGAGTTGTTCTAACTATATGAGTGATTTCAGGTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAAGTAAGTAATTTCTCATAGTTTTAGGCCTTAAAGATTTGAAATGCTTTAATTGATCATAATAGTCTGTCATGTTTATTGATGTGGTTGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGGTCAAATTTGATTTCACCGTAGTCCATAATGTTGCAACATGTAGATTAAATGTTCTCTTGGTTCAATTGTGTAGGGCGAAGATCTTTTCGGTTAGTTCACATGTCACTGAAATGTCTTTTTTTTTGCAGCATTGCTTATGGGCTCAGTATG</genome_strand>
        <mrna_strand>TCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAA.....................................................................................TCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAG...........................................................................GACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA............................................................................................GTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG.................................................................................................................................CATTGCTTATGGGCTCAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271714" ref_strand="+" ref_description="SGN-E271714 [cLEM-23-D22]">
      <seq>ccctcttgatagctcaagtaatgatgaaattgataaacttgctattaatgaactctttgaggttgctttaaaagaaagtaaaagtggccctcttgttttgttcatcaaagacattgagaagtctatggtgggtaatcctgaggcctatgctgctttcaagattaagctcgagcatttgccagagaatgttgttgccatagcttcccatgcccagtcggacagccgaaaggagaaatcgcatcctggtggcttgctatttacaaaatttggaagtaaccaaacagcattgcttgaccttgccttcccagataattttggtaggttgcatgatagaagcaaagaaacccccaagacgatgaagcagctcacacgactgtttcccaacaaagttaccatacagatccctcaggacgaaaccttattatccgactggaagcaaaagttagatcgggatatggaaactatgaaatctcagtcaaacattgcaagcattcgcaatgttttgaatcgattcaaaattaattgcgatgaccttgaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="37093" stop="33325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36793" g_stop="36733" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36732" i_stop="36650" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36649" g_stop="36476" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="235" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36475" i_stop="36391" i_length="85">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36390" g_stop="36319" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="307" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36318" i_stop="34350" i_length="1969">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34349" g_stop="34248" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="409" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34247" i_stop="34173" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34172" g_stop="34083" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="499" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34082" i_stop="33668" i_length="415">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33667" g_stop="33625" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="542" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E271714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36793" e_stop="36733"/>
          <exon e_start="36649" e_stop="36476"/>
          <exon e_start="36390" e_stop="36319"/>
          <exon e_start="34349" e_stop="34248"/>
          <exon e_start="34172" e_stop="34083"/>
          <exon e_start="33667" e_stop="33625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAGGTATTTTCTAATATTCCTTTCCATGATACTATTCCACTTCTTAACCGAGTGTGATAGCTTATTTATATGTTTTATCTGTATAGGTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAAGTATGCAAGGCATAGTTATTCTGCATTTCTTTCTGATAAAAAATTGCCTTGCGATGCTGATAGCCTTACTTTTTATCTGTTACAGTCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCAGTATGTAACACTTTCTCTTCCTTTTCCTTTTGTTTTTGGTTTTCCCTTTTCTTGTTCTCAGTGTTGTACCTAAGAACTATGAGGTTGTGAGGCACTTTAGCTGCACGTCTTAGGGGGAGTTTGTCAATGTGCTAATAGCCTCATATGGATTTTCTTTATTTTGTTATTACCCATGACTGACACTAGGAGTCTCCAAGCCTTTTACATTTGGTCATTTACGAACTGCATAGTTAAAGAGCATACAATACAAAAGAGACTCCTTTTCCTCAATATGCTGAGATGTAGGAGTTGTCAAATGATTGGGTGTCAAATTGGGTTTTAAAAATATGGTGCCAGCTTTAATCCACAAAAACCCATTCCTTGTACTTCATTCTTATACAATACATTCTTCTCTACTCTAATGGGTCTACCGCTCTACTCTCCACTTAAATACCAGACTTCTGTCTGTGGTTGGGTTCGAGCCCATAACATGCACCTAATTACATATCACCCACTGCACTCTTACCACTAGACCAAAGCCCTCGGAGCCGATTCCTGTCCATATTTTATATTTCTCAATAACCCAAACTGCATTTACCCATCTGTGTCTCTGTCCTCAAGTAATTATTTTTTTAACACACACATGTAGATACATATATATGATGTGTCTACACTTGCAAATGGTTTCATATAATTATTTGAAAGTATTTTTGTGACAAGTCAAAAAATTCAAATTTATCTTCTATTTTCCTGTGGCTGACATTAAGTTCTGAAAAGTATTACACTCATATGTTTGCATGGTTGAGCATACAACCCAAACTCTTTCATACATTACATGAAATTCTCAGGCATAGTGTCAAATTTGTGGATTAGATTGGGTATCGGCAGGAGTAGATTGGTTTTAGTAATCAGTACAGACATTACCAAGCCACCTGACTCCCATTTAATCCATATCCTTGTTCTTTTTTCTTATACAGCACAGATATTTCTGTTCTTACCCATCTTATACTAGGCATACATTTCTACTCTTACTCATATCTCTTTATCTTTCAATCACTGAAGCTACTACCACCCACCCAGTGTTGAGTGTTGTCAATAGCAGTAAACTCAAAAGCTCTTGAGATCACTAAGGGAATTAAGAGCAAAAAAAGCGTGAGGCCGTGAGCTTTAATGAAAAACACGCGAAGGGAGAAAAAAGTACAAATATATATGTTTAATTCAAGACTAATGATTATAAGCTTGAATGACAAATATATGAACAAACAAATCGACTTTTTTTTACAATAAATTGAAATATCAATTGTTTAGTGTTGCCTCTTCAGAAGAGTCTTATTTCAAGGAAAAGCATGCCTCGGAACACTGATGATGACAATGAAGTGCACATTAAGTGAGGCAAAGCACGCCTTTGACAACACTGCCACCACCTACCAATTTCCTCTAGAAATTTAATTTCATGTGTGGTGTTTGTAGTAGATGCATGTGCATGATGTGTCTGTAAGTATGAGGGAGGGGAGTTGCAGAATGTAAGGTTACAGAGAGGGACAGGAAGGAAATAGTGTAGTTTTTATTTTTAGAACGAAAAATACCTAGTTTCTTTTGTGGGAGTTGTTTGGGAAGGGAGTTACAGAATGAAAGGTTACAAGGAGGGACAGGAAGGAAATGTGTAGTTTTTATTTTAGAACCAAAAATACGTAGTTTCTTTTGCTGGAGTTGTTTGGGCATTAGAGGTGGCAAGTGTGGCGTACAAAGAAACTGACTAGAGCATGTTATTTAATGTTTGTGGCTTTTTCCTTGATCAAATCCTTTAACTTCCATTCTTTCCCAACCATCCCCCAACAGAAACTGTTCATCTCTTAAACCCACAGGCAACTCAGTAAAAATGGATTTTGAAACCTATGCTTAACCGTTTTTATAAACTAAAGAGGCCTAGGGGCTTGGGTTTACCTGCAAAATGGTTGATATTACTGCATTTAATGTCATTCCTTTCCAGGATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAGGTAACTTTCAGTTTATGTTTAGACGGCCAACTGCATTAATTTTGATGCAAGCATTTAATATAGGTTTTGTGGCAGGACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAATGTGAGTGCTATTTACTTACCATCTAAGGGGAAAAAAACTTTTTCTTAGATCCCTTCAGTTTTCTCCATTTGTGGATTCTGTAAGCCCATATGAAATATTCTATGTTCTGTGAAATTCTAATTACTTACATAGGCAACACCATGGACATTTCTTTAGCACGTCAATTTTCATTTTCGTACTGTATTATACTGGGTTCACCCGAAAGTCTAAAACCACCTTCTCATCAGTGTATCCCTTGTGAGAAGAGGCAGTTAATTTTGTTTGACCACTCATGGATGATGGACCTAAAGTTGTAAATAATGCTTACAATTGACAGTTATGGTGATTGTGTAAGAAAGAAGAGTATGATGCTTATGAAATTGCATCCTCAATGAACTGATTTATAGAGTTGTTCTAACTATATGAGTGATTTCAGGTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTC</genome_strand>
        <mrna_strand>CCCTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAG...................................................................................GTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAA.....................................................................................TCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAG...........................................................................GACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273058" ref_strand="+" ref_description="SGN-E273058 [cLEM-25-L2]">
      <seq>ccgtcttgatagctcaagtaatgatgaaattgataaacttgctattaatgaactctttgaggttgctttaaaagaaagtaaaagtggccctcttgttttgttcatcaaagacattgagaagtctatggtgggtaatcctgaggcctatgctgctttcaagattaagctcgagcatttgccagagaatgttgttgccatagcttcccatgcccagtcggacagccgaaaggagaaatcgcatcctggtggcttgctatttacaaaatttggaagtaaccaaacagcattgcttgaccttgccttcccagataattttggtaggttgcatgatagaagcaaagaaacccccaagacgatgaagcagctcacacgactgtttcccaacaaagttaccatacagatccctcaggacgaaaccttattatccgactggaagcaaaagttagatcgggatatggaaactatgaaatctcagtcaaacattgcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0022C03-RrZfM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLf0022C03.1" temp_strand="-" temp_description="C09SLf0022C03.1  AC234213.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0022C03 upload_account_name:spain (1 - 41987)">
        <position start="37093" stop="33791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36793" g_stop="36733" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36732" i_stop="36650" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36649" g_stop="36476" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="235" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36475" i_stop="36391" i_length="85">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36390" g_stop="36319" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="307" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36318" i_stop="34350" i_length="1969">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34349" g_stop="34248" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="409" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34247" i_stop="34173" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34172" g_stop="34091" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="491" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0022C03.1" gen_strand="-" ref_id="SGN-E273058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0022C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36793" e_stop="36733"/>
          <exon e_start="36649" e_stop="36476"/>
          <exon e_start="36390" e_stop="36319"/>
          <exon e_start="34349" e_stop="34248"/>
          <exon e_start="34172" e_stop="34091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAGGTATTTTCTAATATTCCTTTCCATGATACTATTCCACTTCTTAACCGAGTGTGATAGCTTATTTATATGTTTTATCTGTATAGGTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAAGTATGCAAGGCATAGTTATTCTGCATTTCTTTCTGATAAAAAATTGCCTTGCGATGCTGATAGCCTTACTTTTTATCTGTTACAGTCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCAGTATGTAACACTTTCTCTTCCTTTTCCTTTTGTTTTTGGTTTTCCCTTTTCTTGTTCTCAGTGTTGTACCTAAGAACTATGAGGTTGTGAGGCACTTTAGCTGCACGTCTTAGGGGGAGTTTGTCAATGTGCTAATAGCCTCATATGGATTTTCTTTATTTTGTTATTACCCATGACTGACACTAGGAGTCTCCAAGCCTTTTACATTTGGTCATTTACGAACTGCATAGTTAAAGAGCATACAATACAAAAGAGACTCCTTTTCCTCAATATGCTGAGATGTAGGAGTTGTCAAATGATTGGGTGTCAAATTGGGTTTTAAAAATATGGTGCCAGCTTTAATCCACAAAAACCCATTCCTTGTACTTCATTCTTATACAATACATTCTTCTCTACTCTAATGGGTCTACCGCTCTACTCTCCACTTAAATACCAGACTTCTGTCTGTGGTTGGGTTCGAGCCCATAACATGCACCTAATTACATATCACCCACTGCACTCTTACCACTAGACCAAAGCCCTCGGAGCCGATTCCTGTCCATATTTTATATTTCTCAATAACCCAAACTGCATTTACCCATCTGTGTCTCTGTCCTCAAGTAATTATTTTTTTAACACACACATGTAGATACATATATATGATGTGTCTACACTTGCAAATGGTTTCATATAATTATTTGAAAGTATTTTTGTGACAAGTCAAAAAATTCAAATTTATCTTCTATTTTCCTGTGGCTGACATTAAGTTCTGAAAAGTATTACACTCATATGTTTGCATGGTTGAGCATACAACCCAAACTCTTTCATACATTACATGAAATTCTCAGGCATAGTGTCAAATTTGTGGATTAGATTGGGTATCGGCAGGAGTAGATTGGTTTTAGTAATCAGTACAGACATTACCAAGCCACCTGACTCCCATTTAATCCATATCCTTGTTCTTTTTTCTTATACAGCACAGATATTTCTGTTCTTACCCATCTTATACTAGGCATACATTTCTACTCTTACTCATATCTCTTTATCTTTCAATCACTGAAGCTACTACCACCCACCCAGTGTTGAGTGTTGTCAATAGCAGTAAACTCAAAAGCTCTTGAGATCACTAAGGGAATTAAGAGCAAAAAAAGCGTGAGGCCGTGAGCTTTAATGAAAAACACGCGAAGGGAGAAAAAAGTACAAATATATATGTTTAATTCAAGACTAATGATTATAAGCTTGAATGACAAATATATGAACAAACAAATCGACTTTTTTTTACAATAAATTGAAATATCAATTGTTTAGTGTTGCCTCTTCAGAAGAGTCTTATTTCAAGGAAAAGCATGCCTCGGAACACTGATGATGACAATGAAGTGCACATTAAGTGAGGCAAAGCACGCCTTTGACAACACTGCCACCACCTACCAATTTCCTCTAGAAATTTAATTTCATGTGTGGTGTTTGTAGTAGATGCATGTGCATGATGTGTCTGTAAGTATGAGGGAGGGGAGTTGCAGAATGTAAGGTTACAGAGAGGGACAGGAAGGAAATAGTGTAGTTTTTATTTTTAGAACGAAAAATACCTAGTTTCTTTTGTGGGAGTTGTTTGGGAAGGGAGTTACAGAATGAAAGGTTACAAGGAGGGACAGGAAGGAAATGTGTAGTTTTTATTTTAGAACCAAAAATACGTAGTTTCTTTTGCTGGAGTTGTTTGGGCATTAGAGGTGGCAAGTGTGGCGTACAAAGAAACTGACTAGAGCATGTTATTTAATGTTTGTGGCTTTTTCCTTGATCAAATCCTTTAACTTCCATTCTTTCCCAACCATCCCCCAACAGAAACTGTTCATCTCTTAAACCCACAGGCAACTCAGTAAAAATGGATTTTGAAACCTATGCTTAACCGTTTTTATAAACTAAAGAGGCCTAGGGGCTTGGGTTTACCTGCAAAATGGTTGATATTACTGCATTTAATGTCATTCCTTTCCAGGATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAGGTAACTTTCAGTTTATGTTTAGACGGCCAACTGCATTAATTTTGATGCAAGCATTTAATATAGGTTTTGTGGCAGGACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCA</genome_strand>
        <mrna_strand>CCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAG...................................................................................GTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAA.....................................................................................TCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAG...........................................................................GACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>42</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="926" PGL_stop="4772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="926" e_stop="1131"/>
            <exon e_start="1235" e_stop="1442"/>
            <exon e_start="1525" e_stop="1620"/>
            <exon e_start="2021" e_stop="2095"/>
            <exon e_start="2819" e_stop="2929"/>
            <exon e_start="3494" e_stop="3585"/>
            <exon e_start="3772" e_stop="3856"/>
            <exon e_start="4087" e_stop="4494"/>
            <exon e_start="4760" e_stop="4772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="926" e_stop="1131" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1235" e_stop="1442" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.825">
            <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1525" e_stop="1620" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2021" e_stop="2095" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2819" e_stop="2929" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2930" i_stop="3493" i_length="564"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3494" e_stop="3585" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.946">
            <gDNA_intron_boundary i_start="3586" i_stop="3771" i_length="186"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3772" e_stop="3856" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.877">
            <gDNA_intron_boundary i_start="3857" i_stop="4086" i_length="230"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="4087" e_stop="4494" e_length="408"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4495" i_stop="4759" i_length="265"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4760" e_stop="4772" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="926" stop="1131"/>
              <exon start="1235" stop="1411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="928" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="933" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="946" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="975" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2929"/>
              <exon start="3494" stop="3585"/>
              <exon start="3772" stop="3856"/>
              <exon start="4087" stop="4494"/>
              <exon start="4760" stop="4772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="979" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1015" stop="1131"/>
              <exon start="1235" stop="1397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1271" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1391" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2929"/>
              <exon start="3494" stop="3585"/>
              <exon start="3772" stop="3856"/>
              <exon start="4087" stop="4212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3497" stop="3585"/>
              <exon start="3772" stop="3856"/>
              <exon start="4087" stop="4402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACCCTAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA : GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG : GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG : ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG : GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCG : GTACTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAG : TGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAAC : GTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAGACAAGACTCGCCGAAAGGGCAGACATTCCCCGTACTAACAATTTTTCCTTTGGATGGAAAGATTATGTTGTATATTATTTATTAGTTACTTC : AAAAAAAAAAAAA</gDNA_template>
            <first_frame> Q  T  L  N  P  A  S  R  S  F  L  H  C  *  Q  R  E  K  K  K  K  K  K  M  D  G  A  E  E  M  E  I  E  G  Q  S  Q  L  L  P  I  C  N  D  S  K  R  F  G  I  K  N  S  I  Q  T  N  F  A  D  D  Y  V  F  Q  I  V  P  K :   N  D  W  T  S  M  A  V  S  L  S  T  N  A  I  K  L  Y  S  L  A  T  A  Q  Y  I  G  E  C  N  G  H  S  S  T  I  N  Q  I  S  F  S  D  P  S  S  P  H  V  L  H  S  C  S  S  D  G  T  L  R  A  W  D  T  R  S  F  Q  Q  :  V  F  S  L  N  A  G  P  S  Q  E  I  F  S  F  S  F  G  G  P  N  H  N  L  L  A  A  G  C  N  S  Q  :  I  L  F  W  D  W  R  T  K  R  Q  V  A  C  L  E  E  S  H  T  E  D  V  T  Q  :  V  H  F  I  P  G  Y  D  D  R  L  I  S  G  S  V  D  G  L  M  C  L  F  D  T  G  G  D  I  N  D  D  D  Q  M  V  S  :  V  L  N  V  G  T  S  I  G  K  V  G  F  L  G  E  K  N  Q  K  L  W  C  L  T  H  I  E  T  L  S :   V  W  D  W  K  E  E  K  T  E  A  S  F  E  D  A  R  S  L  A  S  K  S  W  M  A  D  N  :  V  D  Y  F  I  D  C  H  Y  S  V  E  E  D  R  L  W  V  I  G  G  T  N  G  G  S  L  G  Y  F  P  V  T  Y  K  E  T  R  A  I  G  P  P  E  A  I  L  C  G  G  H  E  G  I  I  R  S  V  L  S  G  V  P  G  Q  T  M  D  N  H  G  I  F  G  W  T  G  G  E  D  G  R  L  C  C  W  L  S  D  G  S  S  T  S  Q  S  W  I  S  T  L  A  L  K  S  D  K  T  R  R  K  G  R  H  S  P  Y  *  Q  F  F  L  W  M  E  R  L  C  C  I  L  F  I  S  Y  F  :  K  K  K  K  </first_frame>
            <second_frame>  K  P  *  T  L  R  A  G  V  F  F  T  V  D  R  E  R  R  R  R  R  R  K  W  M  A  Q  R  R  W  K  *  R  D  N  R  S  C  F  Q  Y  A  T  I  L  S  D  L  V  S  K  T  L  F  R  L  T  S  P  T  I  T  F  S  K  L  F  P   : R  M  I  G  H  Q  W  R  Y  H  S  Q  L  M  R  L  S  C  T  L  *  L  L  H  S  T  L  G  N  V  M  V  I  L  Q  R  L  I  K  F  P  F  R  I  L  H  R  H  M  C  C  I  L  V  L  L  M  E  L  S  E  L  G  I  P  G  L  F  S  R :   C  F  P  *  M  L  A  L  L  K  R  Y  L  V  S  P  L  V  D  L  I  I  I  C  L  L  P  G  V  I  L  R :   Y  S  F  G  I  G  G  P  S  V  R  L  R  A  W  R  N  L  I  R  K  M  L  L  R :   C  T  L  F  Q  A  M  M  I  D  S  F  L  D  Q  L  M  D  *  C  V  Y  L  I  L  V  E  I  S  T  M  M  I  K  W  Y  R :   Y  S  M  W  E  P  L  L  E  K  W  D  F  L  E  R  R  I  R  S  F  G  V  *  H  T  L  K  L  *   : V  S  G  T  G  K  K  K  K  P  R  P  V  L  R  M  L  D  P  W  P  L  R  A  G  W  Q  T  T :   L  T  I  S  L  I  A  T  I  Q  W  R  K  I  V  S  G  *  L  V  V  R  M  V  V  R  W  A  I  S  L  *  L  I  K  R  H  E  L  L  V  L  Q  K  Q  F  Y  A  V  D  M  K  A  S  L  G  V  S  C  L  G  Y  Q  V  R  P  W  I  T  T  G  S  L  D  G  L  V  V  K  M  V  V  F  V  V  G  C  L  M  V  L  V  Q  A  N  H  G  S  L  L  L  L  *  N  Q  T  R  L  A  E  R  A  D  I  P  R  T  N  N  F  S  F  G  W  K  D  Y  V  V  Y  Y  L  L  V  T  S :   K  K  K  K </second_frame>
            <third_frame>   N  P  K  P  C  E  P  E  F  S  S  L  L  T  E  R  E  E  E  E  E  E  N  G  W  R  R  G  D  G  N  R  G  T  I  A  V  A  S  N  M  Q  R  F  *  A  I  W  Y  Q  K  L  Y  S  D  *  L  R  R  R  L  R  F  P  N  C  S  Q  :  E  *  L  D  I  N  G  G  I  T  L  N  *  C  D  *  V  V  L  F  S  Y  C  T  V  H  W  G  M  *  W  S  F  F  N  D  *  S  N  F  L  F  G  S  F  I  A  T  C  A  A  F  L  F  F  *  W  N  S  Q  S  L  G  Y  Q  V  F  S  A   : G  V  F  P  K  C  W  P  F  S  R  D  I  *  F  L  L  W  W  T  *  S  *  S  A  C  C  R  V  *  F  S   : D  T  L  L  G  L  E  D  Q  A  S  G  C  V  L  G  G  I  S  Y  G  R  C  Y  S   : G  A  L  Y  S  R  L  *  *  *  T  H  F  W  I  S  *  W  I  N  V  S  I  *  Y  W  W  R  Y  Q  R  *  *  S  N  G  I   : G  T  Q  C  G  N  L  Y  W  K  S  G  I  S  W  R  E  E  S  E  A  L  V  F  D  T  H  *  N  F  K  :  C  L  G  L  E  R  R  K  N  R  G  Q  F  *  G  C  *  I  L  G  L  *  E  L  D  G  R  Q   : R  *  L  F  H  *  L  P  L  F  S  G  G  R  S  S  L  G  N  W  W  Y  E  W  W  F  V  G  L  F  P  C  N  L  *  R  D  T  S  Y  W  S  S  R  S  N  F  M  R  W  T  *  R  H  H  *  E  C  L  V  W  G  T  R  S  D  H  G  *  P  R  D  L  W  M  D  W  W  *  R  W  S  S  L  L  L  V  V  *  W  F  *  Y  K  P  I  M  D  L  Y  S  C  F  E  I  R  Q  D  S  P  K  G  Q  T  F  P  V  L  T  I  F  P  L  D  G  K  I  M  L  Y  I  I  Y  *  L  L   : Q  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="968" stop="1131"/>
                    <exon start="1235" stop="1442"/>
                    <exon start="1525" stop="1620"/>
                    <exon start="2021" stop="2095"/>
                    <exon start="2819" stop="2929"/>
                    <exon start="3494" stop="3585"/>
                    <exon start="3772" stop="3856"/>
                    <exon start="4087" stop="4440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREKKKKKKMDGAEEMEIEGQSQLLPICNDSKRFGIKNSIQTNFADDYVFQIVPKNDWTSMAVSLSTNAIKLYSLATAQYIGECNGHSSTINQISFSDPSSPHVLHSCSSDGTLRAWDTRSFQQVFSLNAGPSQEIFSFSFGGPNHNLLAAGCNSQILFWDWRTKRQVACLEESHTEDVTQVHFIPGYDDRLISGSVDGLMCLFDTGGDINDDDQMVSVLNVGTSIGKVGFLGEKNQKLWCLTHIETLSVWDWKEEKTEASFEDARSLASKSWMADNVDYFIDCHYSVEEDRLWVIGGTNGGSLGYFPVTYKETRAIGPPEAILCGGHEGIIRSVLSGVPGQTMDNHGIFGWTGGEDGRLCCWLSDGSSTSQSWISTLALKSDKTRRKGRHSPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="926" e_stop="1131"/>
            <exon e_start="1235" e_stop="1442"/>
            <exon e_start="1525" e_stop="1620"/>
            <exon e_start="2021" e_stop="2095"/>
            <exon e_start="2819" e_stop="2929"/>
            <exon e_start="3494" e_stop="3585"/>
            <exon e_start="3772" e_stop="3856"/>
            <exon e_start="4087" e_stop="4638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="926" e_stop="1131" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1132" i_stop="1234" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1235" e_stop="1442" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.825">
            <gDNA_intron_boundary i_start="1443" i_stop="1524" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1525" e_stop="1620" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1621" i_stop="2020" i_length="400"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2021" e_stop="2095" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="2096" i_stop="2818" i_length="723"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2819" e_stop="2929" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2930" i_stop="3493" i_length="564"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3494" e_stop="3585" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.946">
            <gDNA_intron_boundary i_start="3586" i_stop="3771" i_length="186"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3772" e_stop="3856" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.877">
            <gDNA_intron_boundary i_start="3857" i_stop="4086" i_length="230"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="4087" e_stop="4638" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="926" stop="1131"/>
              <exon start="1235" stop="1411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="928" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="933" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="941" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="946" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="979" stop="1131"/>
              <exon start="1235" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1015" stop="1131"/>
              <exon start="1235" stop="1397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1271" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1391" stop="1442"/>
              <exon start="1525" stop="1620"/>
              <exon start="2021" stop="2095"/>
              <exon start="2819" stop="2929"/>
              <exon start="3494" stop="3585"/>
              <exon start="3772" stop="3856"/>
              <exon start="4087" stop="4212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3497" stop="3585"/>
              <exon start="3772" stop="3856"/>
              <exon start="4087" stop="4402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4193" stop="4638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACCCTAAACCCTGCGAGCCGGAGTTTTCTTCACTGTTGACAGAGAGAGAAGAAGAAGAAGAAGAAAATGGATGGCGCAGAGGAGATGGAAATAGAGGGACAATCGCAGTTGCTTCCAATATGCAACGATTCTAAGCGATTTGGTATCAAAAACTCTATTCAGACTAACTTCGCCGACGATTACGTTTTCCAAATTGTTCCCAA : GAATGATTGGACATCAATGGCGGTATCACTCTCAACTAATGCGATTAAGTTGTACTCTTTAGCTACTGCACAGTACATTGGGGAATGTAATGGTCATTCTTCAACGATTAATCAAATTTCCTTTTCGGATCCTTCATCGCCACATGTGCTGCATTCTTGTTCTTCTGATGGAACTCTCAGAGCTTGGGATACCAGGTCTTTTCAGCAG : GTGTTTTCCCTAAATGCTGGCCCTTCTCAAGAGATATTTAGTTTCTCCTTTGGTGGACCTAATCATAATCTGCTTGCTGCCGGGTGTAATTCTCAG : ATACTCTTTTGGGATTGGAGGACCAAGCGTCAGGTTGCGTGCTTGGAGGAATCTCATACGGAAGATGTTACTCAG : GTGCACTTTATTCCAGGCTATGATGATAGACTCATTTCTGGATCAGTTGATGGATTAATGTGTCTATTTGATACTGGTGGAGATATCAACGATGATGATCAAATGGTATCG : GTACTCAATGTGGGAACCTCTATTGGAAAAGTGGGATTTCTTGGAGAGAAGAATCAGAAGCTTTGGTGTTTGACACACATTGAAACTTTAAG : TGTCTGGGACTGGAAAGAAGAAAAAACCGAGGCCAGTTTTGAGGATGCTAGATCCTTGGCCTCTAAGAGCTGGATGGCAGACAAC : GTTGACTATTTCATTGATTGCCACTATTCAGTGGAGGAAGATCGTCTCTGGGTAATTGGTGGTACGAATGGTGGTTCGTTGGGCTATTTCCCTGTAACTTATAAAGAGACACGAGCTATTGGTCCTCCAGAAGCAATTTTATGCGGTGGACATGAAGGCATCATTAGGAGTGTCTTGTCTGGGGTACCAGGTCAGACCATGGATAACCACGGGATCTTTGGATGGACTGGTGGTGAAGATGGTCGTCTTTGTTGTTGGTTGTCTGATGGTTCTAGTACAAGCCAATCATGGATCTCTACTCTTGCTTTGAAATCAGACAAGACTCGCCGAAAGGGCAGACATTCCCCGTACTAACAATTTTTCCTTTGGATGGAAAGATTATGTTGTATATTATTTATTAGTTACTTCATATTGTCTTCGTCTCTTATATCAGTGTTGTGTCTTAAATTTATTTGTCAGGTTTGCTTCATTTGAAATGAGGAAATATGTCTGAAATATACCTCAACTTTGATTAAAAATTGTTATAACAATACCAAACTTTGAAAAAAACTT</gDNA_template>
            <first_frame> Q  T  L  N  P  A  S  R  S  F  L  H  C  *  Q  R  E  K  K  K  K  K  K  M  D  G  A  E  E  M  E  I  E  G  Q  S  Q  L  L  P  I  C  N  D  S  K  R  F  G  I  K  N  S  I  Q  T  N  F  A  D  D  Y  V  F  Q  I  V  P  K :   N  D  W  T  S  M  A  V  S  L  S  T  N  A  I  K  L  Y  S  L  A  T  A  Q  Y  I  G  E  C  N  G  H  S  S  T  I  N  Q  I  S  F  S  D  P  S  S  P  H  V  L  H  S  C  S  S  D  G  T  L  R  A  W  D  T  R  S  F  Q  Q  :  V  F  S  L  N  A  G  P  S  Q  E  I  F  S  F  S  F  G  G  P  N  H  N  L  L  A  A  G  C  N  S  Q  :  I  L  F  W  D  W  R  T  K  R  Q  V  A  C  L  E  E  S  H  T  E  D  V  T  Q  :  V  H  F  I  P  G  Y  D  D  R  L  I  S  G  S  V  D  G  L  M  C  L  F  D  T  G  G  D  I  N  D  D  D  Q  M  V  S  :  V  L  N  V  G  T  S  I  G  K  V  G  F  L  G  E  K  N  Q  K  L  W  C  L  T  H  I  E  T  L  S :   V  W  D  W  K  E  E  K  T  E  A  S  F  E  D  A  R  S  L  A  S  K  S  W  M  A  D  N  :  V  D  Y  F  I  D  C  H  Y  S  V  E  E  D  R  L  W  V  I  G  G  T  N  G  G  S  L  G  Y  F  P  V  T  Y  K  E  T  R  A  I  G  P  P  E  A  I  L  C  G  G  H  E  G  I  I  R  S  V  L  S  G  V  P  G  Q  T  M  D  N  H  G  I  F  G  W  T  G  G  E  D  G  R  L  C  C  W  L  S  D  G  S  S  T  S  Q  S  W  I  S  T  L  A  L  K  S  D  K  T  R  R  K  G  R  H  S  P  Y  *  Q  F  F  L  W  M  E  R  L  C  C  I  L  F  I  S  Y  F  I  L  S  S  S  L  I  S  V  L  C  L  K  F  I  C  Q  V  C  F  I  *  N  E  E  I  C  L  K  Y  T  S  T  L  I  K  N  C  Y  N  N  T  K  L  *  K  K  L </first_frame>
            <second_frame>  K  P  *  T  L  R  A  G  V  F  F  T  V  D  R  E  R  R  R  R  R  R  K  W  M  A  Q  R  R  W  K  *  R  D  N  R  S  C  F  Q  Y  A  T  I  L  S  D  L  V  S  K  T  L  F  R  L  T  S  P  T  I  T  F  S  K  L  F  P   : R  M  I  G  H  Q  W  R  Y  H  S  Q  L  M  R  L  S  C  T  L  *  L  L  H  S  T  L  G  N  V  M  V  I  L  Q  R  L  I  K  F  P  F  R  I  L  H  R  H  M  C  C  I  L  V  L  L  M  E  L  S  E  L  G  I  P  G  L  F  S  R :   C  F  P  *  M  L  A  L  L  K  R  Y  L  V  S  P  L  V  D  L  I  I  I  C  L  L  P  G  V  I  L  R :   Y  S  F  G  I  G  G  P  S  V  R  L  R  A  W  R  N  L  I  R  K  M  L  L  R :   C  T  L  F  Q  A  M  M  I  D  S  F  L  D  Q  L  M  D  *  C  V  Y  L  I  L  V  E  I  S  T  M  M  I  K  W  Y  R :   Y  S  M  W  E  P  L  L  E  K  W  D  F  L  E  R  R  I  R  S  F  G  V  *  H  T  L  K  L  *   : V  S  G  T  G  K  K  K  K  P  R  P  V  L  R  M  L  D  P  W  P  L  R  A  G  W  Q  T  T :   L  T  I  S  L  I  A  T  I  Q  W  R  K  I  V  S  G  *  L  V  V  R  M  V  V  R  W  A  I  S  L  *  L  I  K  R  H  E  L  L  V  L  Q  K  Q  F  Y  A  V  D  M  K  A  S  L  G  V  S  C  L  G  Y  Q  V  R  P  W  I  T  T  G  S  L  D  G  L  V  V  K  M  V  V  F  V  V  G  C  L  M  V  L  V  Q  A  N  H  G  S  L  L  L  L  *  N  Q  T  R  L  A  E  R  A  D  I  P  R  T  N  N  F  S  F  G  W  K  D  Y  V  V  Y  Y  L  L  V  T  S  Y  C  L  R  L  L  Y  Q  C  C  V  L  N  L  F  V  R  F  A  S  F  E  M  R  K  Y  V  *  N  I  P  Q  L  *  L  K  I  V  I  T  I  P  N  F  E  K  N   </second_frame>
            <third_frame>   N  P  K  P  C  E  P  E  F  S  S  L  L  T  E  R  E  E  E  E  E  E  N  G  W  R  R  G  D  G  N  R  G  T  I  A  V  A  S  N  M  Q  R  F  *  A  I  W  Y  Q  K  L  Y  S  D  *  L  R  R  R  L  R  F  P  N  C  S  Q  :  E  *  L  D  I  N  G  G  I  T  L  N  *  C  D  *  V  V  L  F  S  Y  C  T  V  H  W  G  M  *  W  S  F  F  N  D  *  S  N  F  L  F  G  S  F  I  A  T  C  A  A  F  L  F  F  *  W  N  S  Q  S  L  G  Y  Q  V  F  S  A   : G  V  F  P  K  C  W  P  F  S  R  D  I  *  F  L  L  W  W  T  *  S  *  S  A  C  C  R  V  *  F  S   : D  T  L  L  G  L  E  D  Q  A  S  G  C  V  L  G  G  I  S  Y  G  R  C  Y  S   : G  A  L  Y  S  R  L  *  *  *  T  H  F  W  I  S  *  W  I  N  V  S  I  *  Y  W  W  R  Y  Q  R  *  *  S  N  G  I   : G  T  Q  C  G  N  L  Y  W  K  S  G  I  S  W  R  E  E  S  E  A  L  V  F  D  T  H  *  N  F  K  :  C  L  G  L  E  R  R  K  N  R  G  Q  F  *  G  C  *  I  L  G  L  *  E  L  D  G  R  Q   : R  *  L  F  H  *  L  P  L  F  S  G  G  R  S  S  L  G  N  W  W  Y  E  W  W  F  V  G  L  F  P  C  N  L  *  R  D  T  S  Y  W  S  S  R  S  N  F  M  R  W  T  *  R  H  H  *  E  C  L  V  W  G  T  R  S  D  H  G  *  P  R  D  L  W  M  D  W  W  *  R  W  S  S  L  L  L  V  V  *  W  F  *  Y  K  P  I  M  D  L  Y  S  C  F  E  I  R  Q  D  S  P  K  G  Q  T  F  P  V  L  T  I  F  P  L  D  G  K  I  M  L  Y  I  I  Y  *  L  L  H  I  V  F  V  S  Y  I  S  V  V  S  *  I  Y  L  S  G  L  L  H  L  K  *  G  N  M  S  E  I  Y  L  N  F  D  *  K  L  L  *  Q  Y  Q  T  L  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="968" stop="1131"/>
                    <exon start="1235" stop="1442"/>
                    <exon start="1525" stop="1620"/>
                    <exon start="2021" stop="2095"/>
                    <exon start="2819" stop="2929"/>
                    <exon start="3494" stop="3585"/>
                    <exon start="3772" stop="3856"/>
                    <exon start="4087" stop="4440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QREKKKKKKMDGAEEMEIEGQSQLLPICNDSKRFGIKNSIQTNFADDYVFQIVPKNDWTSMAVSLSTNAIKLYSLATAQYIGECNGHSSTINQISFSDPSSPHVLHSCSSDGTLRAWDTRSFQQVFSLNAGPSQEIFSFSFGGPNHNLLAAGCNSQILFWDWRTKRQVACLEESHTEDVTQVHFIPGYDDRLISGSVDGLMCLFDTGGDINDDDQMVSVLNVGTSIGKVGFLGEKNQKLWCLTHIETLSVWDWKEEKTEASFEDARSLASKSWMADNVDYFIDCHYSVEEDRLWVIGGTNGGSLGYFPVTYKETRAIGPPEAILCGGHEGIIRSVLSGVPGQTMDNHGIFGWTGGEDGRLCCWLSDGSSTSQSWISTLALKSDKTRRKGRHSPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4772" PGL_stop="4096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4772" e_stop="4760"/>
            <exon e_start="4654" e_stop="4096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4772" e_stop="4760" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4759" i_stop="4655" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="4654" e_stop="4096" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4772" stop="4760"/>
              <exon start="4654" stop="4096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544653" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTT : TAGTGCAGAAGGTAAAAAGTTTTTTTCAAAGTTTGGTATTGTTATAACAATTTTTAATCAAAGTTGAGGTATATTTCAGACATATTTCCTCATTTCAAATGAAGCAAACCTGACAAATAAATTTAAGACACAACACTGATATAAGAGACGAAGACAATATGAAGTAACTAATAAATAATATACAACATAATCTTTCCATCCAAAGGAAAAATTGTTAGTACGGGGAATGTCTGCCCTTTCGGCGAGTCTTGTCTGATTTCAAAGCAAGAGTAGAGATCCATGATTGGCTTGTACTAGAACCATCAGACAACCAACAACAAAGACGACCATCTTCACCACCAGTCCATCCAAAGATCCCGTGGTTATCCATGGTCTGACCTGGTACCCCAGACAAGACACTCCTAATGATGCCTTCATGTCCACCGCATAAAATTGCTTCTGGAGGACCAATAGCTCGTGTCTCTTTATAAGTTACAGGGAAATAGCCCAACGAACCACCATTCGTACCACCAATTACCCAGAGACGATCTTCCTCCACTGAATAGTGGCAATCAATGAA</gDNA_template>
            <first_frame> F  F  F  F   : L  V  Q  K  V  K  S  F  F  Q  S  L  V  L  L  *  Q  F  L  I  K  V  E  V  Y  F  R  H  I  S  S  F  Q  M  K  Q  T  *  Q  I  N  L  R  H  N  T  D  I  R  D  E  D  N  M  K  *  L  I  N  N  I  Q  H  N  L  S  I  Q  R  K  N  C  *  Y  G  E  C  L  P  F  R  R  V  L  S  D  F  K  A  R  V  E  I  H  D  W  L  V  L  E  P  S  D  N  Q  Q  Q  R  R  P  S  S  P  P  V  H  P  K  I  P  W  L  S  M  V  *  P  G  T  P  D  K  T  L  L  M  M  P  S  C  P  P  H  K  I  A  S  G  G  P  I  A  R  V  S  L  *  V  T  G  K  *  P  N  E  P  P  F  V  P  P  I  T  Q  R  R  S  S  S  T  E  *  W  Q  S  M   </first_frame>
            <second_frame>  F  F  F  F  :  *  C  R  R  *  K  V  F  F  K  V  W  Y  C  Y  N  N  F  *  S  K  L  R  Y  I  S  D  I  F  P  H  F  K  *  S  K  P  D  K  *  I  *  D  T  T  L  I  *  E  T  K  T  I  *  S  N  *  *  I  I  Y  N  I  I  F  P  S  K  G  K  I  V  S  T  G  N  V  C  P  F  G  E  S  C  L  I  S  K  Q  E  *  R  S  M  I  G  L  Y  *  N  H  Q  T  T  N  N  K  D  D  H  L  H  H  Q  S  I  Q  R  S  R  G  Y  P  W  S  D  L  V  P  Q  T  R  H  S  *  *  C  L  H  V  H  R  I  K  L  L  L  E  D  Q  *  L  V  S  L  Y  K  L  Q  G  N  S  P  T  N  H  H  S  Y  H  Q  L  P  R  D  D  L  P  P  L  N  S  G  N  Q  *  </second_frame>
            <third_frame>   F  F  F  F :   S  A  E  G  K  K  F  F  S  K  F  G  I  V  I  T  I  F  N  Q  S  *  G  I  F  Q  T  Y  F  L  I  S  N  E  A  N  L  T  N  K  F  K  T  Q  H  *  Y  K  R  R  R  Q  Y  E  V  T  N  K  *  Y  T  T  *  S  F  H  P  K  E  K  L  L  V  R  G  M  S  A  L  S  A  S  L  V  *  F  Q  S  K  S  R  D  P  *  L  A  C  T  R  T  I  R  Q  P  T  T  K  T  T  I  F  T  T  S  P  S  K  D  P  V  V  I  H  G  L  T  W  Y  P  R  Q  D  T  P  N  D  A  F  M  S  T  A  *  N  C  F  W  R  T  N  S  S  C  L  F  I  S  Y  R  E  I  A  Q  R  T  T  I  R  T  T  N  Y  P  E  T  I  F  L  H  *  I  V  A  I  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLf0022C03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13690" PGL_stop="11549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13690" e_stop="13365"/>
            <exon e_start="12864" e_stop="12541"/>
            <exon e_start="11626" e_stop="11549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13690" e_stop="13365" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.991">
            <gDNA_intron_boundary i_start="13364" i_stop="12865" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12864" e_stop="12541" e_length="324"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="12540" i_stop="11627" i_length="914"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="11626" e_stop="11549" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13690" stop="13365"/>
              <exon start="12864" stop="12541"/>
              <exon start="11626" stop="11549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCACTGAATTTCTCAGCATGAAGTAGTAAACTTGATATCTTACAGTTACCGGCATTGCCCCTACAATCAAGCGAGCGCCATTGAAATGGACGGAGCAGCAGCAGCTTCTTCACCGTCGACTATTAAACCCATAAACAAGAGCGTAGTCCATAGAATTTGTGCGGGTCAAGTTATTCTGGACCTTCCCTCTGCCGTCAAGGAATTGGTTGAAAATAGCTTGGACGCCGGAGCTACCAGCATCGAAGTCTCCCTCAAAGACTATGGTTCTGAATCCTTCCAGGTCATTGATAACGGTTGTGGCATCTCGCCTCAAAATTTCAAG : GTATTGGCGCTAAAACATCATACCTCAAAACTATCAGATTTTCCTGATCTTCAGTCATTAGTGACTTTTGGATTTAGAGGGGAGGCATTGAGTTCACTTTGTGCTTTAGGGGATTTGACAGTTGAAACAAGAACAAAGAATGAGCAAATTGCGACACACTTGACTTTTGATCATTCGGGCCTTCTGATAGCTGAAAGGAACATAGCTCGCCAAGTTGGTACCACTGTCACTGTTAAGAAGTTGTTCTCCACTTTACCAGTGAGAAGTAAAGAATTCCACCGCAATATCCGGAAGGAATATGGAAAGCTTATCACATTGCTGAAT : GCCTATGCTCTTATTTCTAAGGGAGTCAGACTAGTTTGTACCAACTCAGCTCTAAAAAATGCAAAATCTGTAGTTCTG</gDNA_template>
            <first_frame> *  I  T  E  F  L  S  M  K  *  *  T  *  Y  L  T  V  T  G  I  A  P  T  I  K  R  A  P  L  K  W  T  E  Q  Q  Q  L  L  H  R  R  L  L  N  P  *  T  R  A  *  S  I  E  F  V  R  V  K  L  F  W  T  F  P  L  P  S  R  N  W  L  K  I  A  W  T  P  E  L  P  A  S  K  S  P  S  K  T  M  V  L  N  P  S  R  S  L  I  T  V  V  A  S  R  L  K  I  S  R :   Y  W  R  *  N  I  I  P  Q  N  Y  Q  I  F  L  I  F  S  H  *  *  L  L  D  L  E  G  R  H  *  V  H  F  V  L  *  G  I  *  Q  L  K  Q  E  Q  R  M  S  K  L  R  H  T  *  L  L  I  I  R  A  F  *  *  L  K  G  T  *  L  A  K  L  V  P  L  S  L  L  R  S  C  S  P  L  Y  Q  *  E  V  K  N  S  T  A  I  S  G  R  N  M  E  S  L  S  H  C  *  M :   P  M  L  L  F  L  R  E  S  D  *  F  V  P  T  Q  L  *  K  M  Q  N  L  *  F   </first_frame>
            <second_frame>  E  S  L  N  F  S  A  *  S  S  K  L  D  I  L  Q  L  P  A  L  P  L  Q  S  S  E  R  H  *  N  G  R  S  S  S  S  F  F  T  V  D  Y  *  T  H  K  Q  E  R  S  P  *  N  L  C  G  S  S  Y  S  G  P  S  L  C  R  Q  G  I  G  *  K  *  L  G  R  R  S  Y  Q  H  R  S  L  P  Q  R  L  W  F  *  I  L  P  G  H  *  *  R  L  W  H  L  A  S  K  F  Q   : G  I  G  A  K  T  S  Y  L  K  T  I  R  F  S  *  S  S  V  I  S  D  F  W  I  *  R  G  G  I  E  F  T  L  C  F  R  G  F  D  S  *  N  K  N  K  E  *  A  N  C  D  T  L  D  F  *  S  F  G  P  S  D  S  *  K  E  H  S  S  P  S  W  Y  H  C  H  C  *  E  V  V  L  H  F  T  S  E  K  *  R  I  P  P  Q  Y  P  E  G  I  W  K  A  Y  H  I  A  E   : C  L  C  S  Y  F  *  G  S  Q  T  S  L  Y  Q  L  S  S  K  K  C  K  I  C  S  S  </second_frame>
            <third_frame>   N  H  *  I  S  Q  H  E  V  V  N  L  I  S  Y  S  Y  R  H  C  P  Y  N  Q  A  S  A  I  E  M  D  G  A  A  A  A  S  S  P  S  T  I  K  P  I  N  K  S  V  V  H  R  I  C  A  G  Q  V  I  L  D  L  P  S  A  V  K  E  L  V  E  N  S  L  D  A  G  A  T  S  I  E  V  S  L  K  D  Y  G  S  E  S  F  Q  V  I  D  N  G  C  G  I  S  P  Q  N  F  K  :  V  L  A  L  K  H  H  T  S  K  L  S  D  F  P  D  L  Q  S  L  V  T  F  G  F  R  G  E  A  L  S  S  L  C  A  L  G  D  L  T  V  E  T  R  T  K  N  E  Q  I  A  T  H  L  T  F  D  H  S  G  L  L  I  A  E  R  N  I  A  R  Q  V  G  T  T  V  T  V  K  K  L  F  S  T  L  P  V  R  S  K  E  F  H  R  N  I  R  K  E  Y  G  K  L  I  T  L  L  N  :  A  Y  A  L  I  S  K  G  V  R  L  V  C  T  N  S  A  L  K  N  A  K  S  V  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13679" stop="13365"/>
                    <exon start="12864" stop="12541"/>
                    <exon start="11626" stop="11549"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQHEVVNLISYSYRHCPYNQASAIEMDGAAAASSPSTIKPINKSVVHRICAGQVILDLPSAVKELVENSLDAGATSIEVSLKDYGSESFQVIDNGCGISPQNFKVLALKHHTSKLSDFPDLQSLVTFGFRGEALSSLCALGDLTVETRTKNEQIATHLTFDHSGLLIAERNIARQVGTTVTVKKLFSTLPVRSKEFHRNIRKEYGKLITLLNAYALISKGVRLVCTNSALKNAKSVVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19853" PGL_stop="14805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19853" e_stop="19687"/>
            <exon e_start="19434" e_stop="19338"/>
            <exon e_start="18362" e_stop="18290"/>
            <exon e_start="17370" e_stop="17272"/>
            <exon e_start="16666" e_stop="16417"/>
            <exon e_start="15312" e_stop="14805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.826" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.565" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19853" e_stop="19687" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.826" acc_prob="0.993">
            <gDNA_intron_boundary i_start="19686" i_stop="19435" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19434" e_stop="19338" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19337" i_stop="18363" i_length="975"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18362" e_stop="18290" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.927" acc_prob="0.565">
            <gDNA_intron_boundary i_start="18289" i_stop="17371" i_length="919"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17370" e_stop="17272" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.967">
            <gDNA_intron_boundary i_start="17271" i_stop="16667" i_length="605"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16666" e_stop="16417" e_length="250"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16416" i_stop="15313" i_length="1104"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="15312" e_stop="14805" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19853" stop="19687"/>
              <exon start="19434" stop="19338"/>
              <exon start="18362" stop="18290"/>
              <exon start="17370" stop="17272"/>
              <exon start="16666" stop="16417"/>
              <exon start="15312" stop="15206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19852" stop="19687"/>
              <exon start="19434" stop="19338"/>
              <exon start="18362" stop="18290"/>
              <exon start="17370" stop="17272"/>
              <exon start="16666" stop="16522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19851" stop="19687"/>
              <exon start="19434" stop="19338"/>
              <exon start="18362" stop="18290"/>
              <exon start="17370" stop="17272"/>
              <exon start="16666" stop="16551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16639" stop="16417"/>
              <exon start="15312" stop="14805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATCAGTAGGGGTGTGCGCAAGTTAGCAACGATGAGTTTGACGTCTCATTCTTCTACTTTCCTCTTACCAAATCTTCCCGCCGACGACGGACCTGCTCTAACGTACGCTCTCGTTATCCTTAACCAAAGCCTCCCGAAATTCACTCCTCTGCTTTGGAAGCACG : CAAAGGTTCATATTTGTGCTGACGGTGGAGCGAATAGGGTGTTTGATGAATTGCCTGGCATGTTTCCTCATGAGGAGGCATCTGAAATTCGTAAGAG : GTACAAGCCCTATGCTATAAAAGGAGATATGGATTCAATCAGAACTGATGTTCTTGATTATTACAGAGGCCTG : GGAACCAAGATAATTGATGAATCTCAAGATCAAGATACTACAGATCTTAATAAATGCGTTACATATATTCGTGACTCACTAAACTCGGAACATCCAAAT : TTGTGTATTCTAGTCACTGGAGCACTTGGGGGAAGATTTGACCATGAGATGGGAAATATTAATGTCATATGCTGTTTCCCCTCCATGCGGATTATTCTTCTCTCTGATGATAGTCTAATCCAACTTCTTCCAAGTAAGCATCATCACAAGATTCATATACAATCCTTAGTTGAGGGCCCACATTGCGGACTCATACCCATTGGAATGGTTGCCGGAAGAACCAGTACTACGGGTCTCCAATGGAATCTTG : ATAATACCGAAATGAGATTTGGTGGCTTAGTCAGTACATCAAATATCGTGAAAGAAAACATAGTTACAGTGCAATCTGATTCGGACCTCCTATGGACAATTTCTATCAAAAAAGATTGAATGATGCAGTTTTTGCAGATGAAATGATTGAGAGACAATCAACGAAACTTTGTTGAACGCGAACCTCCATTTTCTGAAACAATGGGGTTATTCTTTACTACTTTTTTTTTTTCTGTAGGAAAAAAGCATCCCTTTAGTCTATCTTTGTGAGGCACAAGCAGATCTATTTGACATCAGGTGCCTGCATTGCAGTAAAGGAAAAAAAAATAACACAGGGGCTACGAGTGAGAGTAAGCTCATTGCGGGTTAACTTTGATCGTCAACTTTTGCTTATGTGCTGTAGGAATTTAGTAGCACGTTTTCTAATGTTTTGCATACGTTATTCTTTATCCCATGTAATGAAATAAGGAAATTTTACTATTAATTTGAATTATTAGATAGCCATTATT</gDNA_template>
            <first_frame> Q  N  Q  *  G  C  A  Q  V  S  N  D  E  F  D  V  S  F  F  Y  F  P  L  T  K  S  S  R  R  R  R  T  C  S  N  V  R  S  R  Y  P  *  P  K  P  P  E  I  H  S  S  A  L  E  A  R :   K  G  S  Y  L  C  *  R  W  S  E  *  G  V  *  *  I  A  W  H  V  S  S  *  G  G  I  *  N  S  *  E  :  V  Q  A  L  C  Y  K  R  R  Y  G  F  N  Q  N  *  C  S  *  L  L  Q  R  P   : G  N  Q  D  N  *  *  I  S  R  S  R  Y  Y  R  S  *  *  M  R  Y  I  Y  S  *  L  T  K  L  G  T  S  K   : F  V  Y  S  S  H  W  S  T  W  G  K  I  *  P  *  D  G  K  Y  *  C  H  M  L  F  P  L  H  A  D  Y  S  S  L  *  *  *  S  N  P  T  S  S  K  *  A  S  S  Q  D  S  Y  T  I  L  S  *  G  P  T  L  R  T  H  T  H  W  N  G  C  R  K  N  Q  Y  Y  G  S  P  M  E  S  * :   *  Y  R  N  E  I  W  W  L  S  Q  Y  I  K  Y  R  E  R  K  H  S  Y  S  A  I  *  F  G  P  P  M  D  N  F  Y  Q  K  R  L  N  D  A  V  F  A  D  E  M  I  E  R  Q  S  T  K  L  C  *  T  R  T  S  I  F  *  N  N  G  V  I  L  Y  Y  F  F  F  F  C  R  K  K  A  S  L  *  S  I  F  V  R  H  K  Q  I  Y  L  T  S  G  A  C  I  A  V  K  E  K  K  I  T  Q  G  L  R  V  R  V  S  S  L  R  V  N  F  D  R  Q  L  L  L  M  C  C  R  N  L  V  A  R  F  L  M  F  C  I  R  Y  S  L  S  H  V  M  K  *  G  N  F  T  I  N  L  N  Y  *  I  A  I  I </first_frame>
            <second_frame>  R  I  S  R  G  V  R  K  L  A  T  M  S  L  T  S  H  S  S  T  F  L  L  P  N  L  P  A  D  D  G  P  A  L  T  Y  A  L  V  I  L  N  Q  S  L  P  K  F  T  P  L  L  W  K  H   : A  K  V  H  I  C  A  D  G  G  A  N  R  V  F  D  E  L  P  G  M  F  P  H  E  E  A  S  E  I  R  K  R :   Y  K  P  Y  A  I  K  G  D  M  D  S  I  R  T  D  V  L  D  Y  Y  R  G  L  :  G  T  K  I  I  D  E  S  Q  D  Q  D  T  T  D  L  N  K  C  V  T  Y  I  R  D  S  L  N  S  E  H  P  N  :  L  C  I  L  V  T  G  A  L  G  G  R  F  D  H  E  M  G  N  I  N  V  I  C  C  F  P  S  M  R  I  I  L  L  S  D  D  S  L  I  Q  L  L  P  S  K  H  H  H  K  I  H  I  Q  S  L  V  E  G  P  H  C  G  L  I  P  I  G  M  V  A  G  R  T  S  T  T  G  L  Q  W  N  L   : D  N  T  E  M  R  F  G  G  L  V  S  T  S  N  I  V  K  E  N  I  V  T  V  Q  S  D  S  D  L  L  W  T  I  S  I  K  K  D  *  M  M  Q  F  L  Q  M  K  *  L  R  D  N  Q  R  N  F  V  E  R  E  P  P  F  S  E  T  M  G  L  F  F  T  T  F  F  F  S  V  G  K  K  H  P  F  S  L  S  L  *  G  T  S  R  S  I  *  H  Q  V  P  A  L  Q  *  R  K  K  K  *  H  R  G  Y  E  *  E  *  A  H  C  G  L  T  L  I  V  N  F  C  L  C  A  V  G  I  *  *  H  V  F  *  C  F  A  Y  V  I  L  Y  P  M  *  *  N  K  E  I  L  L  L  I  *  I  I  R  *  P  L   </second_frame>
            <third_frame>   E  S  V  G  V  C  A  S  *  Q  R  *  V  *  R  L  I  L  L  L  S  S  Y  Q  I  F  P  P  T  T  D  L  L  *  R  T  L  S  L  S  L  T  K  A  S  R  N  S  L  L  C  F  G  S  T  :  Q  R  F  I  F  V  L  T  V  E  R  I  G  C  L  M  N  C  L  A  C  F  L  M  R  R  H  L  K  F  V  R   : G  T  S  P  M  L  *  K  E  I  W  I  Q  S  E  L  M  F  L  I  I  T  E  A  W :   E  P  R  *  L  M  N  L  K  I  K  I  L  Q  I  L  I  N  A  L  H  I  F  V  T  H  *  T  R  N  I  Q  I :   C  V  F  *  S  L  E  H  L  G  E  D  L  T  M  R  W  E  I  L  M  S  Y  A  V  S  P  P  C  G  L  F  F  S  L  M  I  V  *  S  N  F  F  Q  V  S  I  I  T  R  F  I  Y  N  P  *  L  R  A  H  I  A  D  S  Y  P  L  E  W  L  P  E  E  P  V  L  R  V  S  N  G  I  L  :  I  I  P  K  *  D  L  V  A  *  S  V  H  Q  I  S  *  K  K  T  *  L  Q  C  N  L  I  R  T  S  Y  G  Q  F  L  S  K  K  I  E  *  C  S  F  C  R  *  N  D  *  E  T  I  N  E  T  L  L  N  A  N  L  H  F  L  K  Q  W  G  Y  S  L  L  L  F  F  F  L  *  E  K  S  I  P  L  V  Y  L  C  E  A  Q  A  D  L  F  D  I  R  C  L  H  C  S  K  G  K  K  N  N  T  G  A  T  S  E  S  K  L  I  A  G  *  L  *  S  S  T  F  A  Y  V  L  *  E  F  S  S  T  F  S  N  V  L  H  T  L  F  F  I  P  C  N  E  I  R  K  F  Y  Y  *  F  E  L  L  D  S  H  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19852" stop="19687"/>
                    <exon start="19434" stop="19338"/>
                    <exon start="18362" stop="18290"/>
                    <exon start="17370" stop="17272"/>
                    <exon start="16666" stop="16417"/>
                    <exon start="15312" stop="15194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RISRGVRKLATMSLTSHSSTFLLPNLPADDGPALTYALVILNQSLPKFTPLLWKHAKVHICADGGANRVFDELPGMFPHEEASEIRKRYKPYAIKGDMDSIRTDVLDYYRGLGTKIIDESQDQDTTDLNKCVTYIRDSLNSEHPNLCILVTGALGGRFDHEMGNINVICCFPSMRIILLSDDSLIQLLPSKHHHKIHIQSLVEGPHCGLIPIGMVAGRTSTTGLQWNLDNTEMRFGGLVSTSNIVKENIVTVQSDSDLLWTISIKKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15056" stop="14847"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFVRHKQIYLTSGACIAVKEKKITQGLRVRVSSLRVNFDRQLLLMCCRNLVARFLMFCIRYSLSHVMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36793" PGL_stop="30037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36793" e_stop="36733"/>
            <exon e_start="36649" e_stop="36476"/>
            <exon e_start="36390" e_stop="36319"/>
            <exon e_start="34349" e_stop="34248"/>
            <exon e_start="34172" e_stop="34083"/>
            <exon e_start="33667" e_stop="33592"/>
            <exon e_start="33499" e_stop="33403"/>
            <exon e_start="33273" e_stop="33204"/>
            <exon e_start="33100" e_stop="32921"/>
            <exon e_start="32767" e_stop="32645"/>
            <exon e_start="32568" e_stop="32485"/>
            <exon e_start="32317" e_stop="32133"/>
            <exon e_start="32025" e_stop="31887"/>
            <exon e_start="31803" e_stop="31744"/>
            <exon e_start="31485" e_stop="31381"/>
            <exon e_start="30416" e_stop="30037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.178" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.580" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36793" e_stop="36733" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36732" i_stop="36650" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36649" e_stop="36476" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.929">
            <gDNA_intron_boundary i_start="36475" i_stop="36391" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36390" e_stop="36319" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36318" i_stop="34350" i_length="1969"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34349" e_stop="34248" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.546">
            <gDNA_intron_boundary i_start="34247" i_stop="34173" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34172" e_stop="34083" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.839" acc_prob="0.178">
            <gDNA_intron_boundary i_start="34082" i_stop="33668" i_length="415"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33667" e_stop="33592" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.961">
            <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33499" e_stop="33403" e_length="97"/>
          </exon>
          <intron i_serial="7" don_prob="0.789" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33204" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33100" e_stop="32921" e_length="180"/>
          </exon>
          <intron i_serial="9" don_prob="0.903" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="32767" e_stop="32645" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="32568" e_stop="32485" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="32317" e_stop="32133" e_length="185"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="32025" e_stop="31887" e_length="139"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.580">
            <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31744" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.743" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="31485" e_stop="31381" e_length="105"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964"/>
          </intron>
          <exon e_serial="16" e_score="0.997">
            <gDNA_exon_boundary e_start="30416" e_stop="30037" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36733"/>
              <exon start="36649" stop="36476"/>
              <exon start="36390" stop="36319"/>
              <exon start="34349" stop="34248"/>
              <exon start="34172" stop="34083"/>
              <exon start="33667" stop="33625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36733"/>
              <exon start="36649" stop="36476"/>
              <exon start="36390" stop="36319"/>
              <exon start="34349" stop="34248"/>
              <exon start="34172" stop="34091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36620" stop="36476"/>
              <exon start="36390" stop="36319"/>
              <exon start="34349" stop="34248"/>
              <exon start="34172" stop="34083"/>
              <exon start="33667" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33633" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33633" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33631" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33631" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33625" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33413" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33222" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33222" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33092" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33030" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32554" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32549" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31950" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272278" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31912" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAG : GTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAA : TCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCA : GATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAG : GACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAAT : GTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA : GTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG : CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG : GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG : CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG : TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG : GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG : GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG : AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG : GAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG : GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGCATATCCTAA</gDNA_template>
            <first_frame> P  S  *  *  L  K  *  *  *  N  *  *  T  C  Y  *  *  T  L  *   : G  C  F  K  R  K  *  K  W  P  S  C  F  V  H  Q  R  H  *  E  V  Y  G  G  *  S  *  G  L  C  C  F  Q  D  *  A  R  A  F  A  R  E  C  C  C  H  S  F  P  C  P  V  G  Q  P  K  G  E   : I  A  S  W  W  L  A  I  Y  K  I  W  K  *  P  N  S  I  A  *  P  C  L  P   : R  *  F  W  *  V  A  *  *  K  Q  R  N  P  Q  D  D  E  A  A  H  T  T  V  S  Q  Q  S  Y  H  T  D  P  S   : G  R  N  L  I  I  R  L  E  A  K  V  R  S  G  Y  G  N  Y  E  I  S  V  K  H  C  K  H  S  Q   : C  F  E  S  I  Q  N  *  L  R  *  P  *  N  S  M  H  K  G  S  S  T  D  K  *  K :   C  *  K  D  N  R  L  G  F  E  S  S  P  Y  A  *  I  *  V  C  Y  E  R  D  E  A  S  Y  L  Q  *  K  :  H  C  L  W  A  Q  Y  V  S  R  H  S  G  *  N  E  E  F  E  E  I  P  Q   : G  R  G  Y  *  K  *  V  R  E  E  T  T  W  G  C  N  S  A  E  *  Y  W  C  Y  F  *  *  H  W  G  V  G  N  C  Q  G  Y  S  E  R  T  G  D  A  A  S  S  A  T  R  I  V  L  *  R  T  A  D  Q   : A  L  Q  G  N  I  A  L  W  T  S  R  Y  W  *  N  N  A  C  E  S  C  C  Y  *  G  W  C  K  L  Y  Q  H  I  N  V  K  H  Y  I  Q   : V  V  R  *  R  G  E  V  C  Q  S  S  L  H  I  S  *  *  N  S  S  E  C  Y  F  R  *  R   : G  G  Q  H  V  G  K  T  R  K  S  G  R  A  *  S  Y  A  E  D  E  E  *  I  H  G  *  L  G  W  F  A  Y  K  R  *  G  T  G  S  C  T  C  C  N  K  *  T  L  *  P  G  *  S  S  Y  *  E  A  S  P  *  :  V  N  G  K  L  A  R  C  F  K  *  G  E  N  F  G  S  Y  F  G  E  G  R  I  S  P  K  C  R  F  R  S  Y  C  Y  Y  D  G  R  V  F  R  E  *  F  E   : E  F  V  C  E  R  C  A  L  P  Y  *  R  N  F  G  E  G  E  E   : G  E  N  I  G  N  C  R  E  Q  A  I  T  G  F  A  *  *  C  R  H  S  S  S  *  H  G  *  F  *  V  C  T  *  A   : G  M  C  Q  C  V  I  R  V  F  K  Y  E  *  A  S  P  V  E  *  F  I  W  R  R  R  I  K  K  E  N  I  S  Q  L  L  H  V  E  E  I  C  L  T  I  *  Q  G  I  G  L  F  V  F  L  F  C  N  P  R  *  Q  H  C  V  D  N  P  F  Q  V  P  Q  S  P  I  G  L  G  P  *  P  P  L  L  Y  H  T  *  L  I  G  F  F  S  S  C  K  S  *  S  L  T  Q  F  F  L  I  F  S  S  L  L  C  T  Y  E  L  S  N  L  R  K  S  I  S  * </first_frame>
            <second_frame>  R  L  D  S  S  S  N  D  E  I  D  K  L  A  I  N  E  L  F  E  :  V  A  L  K  E  S  K  S  G  P  L  V  L  F  I  K  D  I  E  K  S  M  V  G  N  P  E  A  Y  A  A  F  K  I  K  L  E  H  L  P  E  N  V  V  A  I  A  S  H  A  Q  S  D  S  R  K  E  K  :  S  H  P  G  G  L  L  F  T  K  F  G  S  N  Q  T  A  L  L  D  L  A  F  P  :  D  N  F  G  R  L  H  D  R  S  K  E  T  P  K  T  M  K  Q  L  T  R  L  F  P  N  K  V  T  I  Q  I  P  Q  :  D  E  T  L  L  S  D  W  K  Q  K  L  D  R  D  M  E  T  M  K  S  Q  S  N  I  A  S  I  R  N  :  V  L  N  R  F  K  I  N  C  D  D  L  E  I  L  C  I  K  D  Q  A  L  T  N  E   : S  V  E  K  I  I  G  W  A  L  S  H  H  L  M  H  K  S  E  S  A  M  K  E  T  K  L  A  I  S  S  E  S :   I  A  Y  G  L  S  M  F  Q  G  I  Q  G  E  T  K  S  L  K  K  S  L  K  :  D  V  V  T  E  N  E  F  E  K  K  L  L  G  D  V  I  P  P  S  D  I  G  V  T  F  N  D  I  G  A  L  E  T  V  K  D  T  L  K  E  L  V  M  L  P  L  Q  R  P  E  L  F  C  K  G  Q  L  T  K  :  P  C  K  G  I  L  L  F  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  T  E  A  G  A  N  F  I  N  I  S  M  S  S  I  T  S  K  :  W  F  G  E  G  E  K  Y  V  K  A  V  F  T  L  A  S  K  I  A  P  S  V  I  F  V  D  E  :  V  D  S  M  L  G  R  R  E  N  P  G  E  H  E  A  M  R  K  M  K  N  E  F  M  V  N  W  D  G  L  R  T  K  D  K  E  R  V  L  V  L  A  A  T  N  R  P  F  D  L  D  E  A  V  I  R  R  L  P  R  R :   L  M  V  N  L  P  D  A  S  N  R  E  K  I  L  G  V  I  L  A  K  E  E  L  A  P  N  V  D  L  E  A  I  A  T  M  T  D  G  Y  S  G  S  D  L  K  :  N  L  C  V  S  A  A  H  C  P  I  R  E  I  L  E  K  E  K  K  :  E  K  T  L  A  I  A  E  S  R  P  S  P  A  L  H  S  S  A  D  I  R  P  L  N  M  D  D  F  K  Y  A  H  E  Q  :  V  C  A  S  V  S  S  E  S  S  N  M  N  E  L  L  Q  W  N  D  L  Y  G  E  G  G  S  R  K  K  T  S  L  S  Y  F  M  *  R  R  Y  V  *  L  Y  S  K  A  L  V  Y  L  F  S  C  S  A  T  R  D  N  S  I  A  W  I  I  H  F  R  F  P  K  V  Q  L  A  L  A  P  D  P  P  F  C  I  I  L  S  *  *  D  F  F  P  V  A  S  P  E  V  S  P  N  F  F  S  F  L  A  L  F  S  V  H  M  S  *  V  I  *  E  K  A  Y  P   </second_frame>
            <third_frame>   V  L  I  A  Q  V  M  M  K  L  I  N  L  L  L  M  N  S  L  R :   L  L  *  K  K  V  K  V  A  L  L  F  C  S  S  K  T  L  R  S  L  W  W  V  I  L  R  P  M  L  L  S  R  L  S  S  S  I  C  Q  R  M  L  L  P  *  L  P  M  P  S  R  T  A  E  R  R  N :   R  I  L  V  A  C  Y  L  Q  N  L  E  V  T  K  Q  H  C  L  T  L  P  S  Q :   I  I  L  V  G  C  M  I  E  A  K  K  P  P  R  R  *  S  S  S  H  D  C  F  P  T  K  L  P  Y  R  S  L  R :   T  K  P  Y  Y  P  T  G  S  K  S  *  I  G  I  W  K  L  *  N  L  S  Q  T  L  Q  A  F  A  M :   F  *  I  D  S  K  L  I  A  M  T  L  K  F  Y  A  *  R  I  K  H  *  Q  M  K  :  V  L  K  R  *  S  A  G  L  *  V  I  T  L  C  I  N  L  S  L  L  *  K  R  R  S  *  L  S  P  V  K   : A  L  L  M  G  S  V  C  F  K  A  F  R  V  K  R  R  V  *  R  N  P  S  R :   T  W  L  L  K  M  S  S  R  R  N  Y  L  G  M  *  F  R  R  V  I  L  V  L  L  L  M  T  L  G  R  W  K  L  S  R  I  L  *  K  N  W  *  C  C  L  F  S  D  Q  N  C  F  V  K  D  S  *  P  S :   L  A  R  E  Y  C  S  L  D  L  Q  V  L  V  K  Q  C  L  R  K  L  L  L  L  R  L  V  Q  T  L  S  T  Y  Q  C  Q  A  L  H  P  S :   G  S  V  K  G  R  S  M  S  K  Q  S  S  H  *  L  V  K  *  L  R  V  L  F  S  L  T  R :   W  T  A  C  W  E  D  E  K  I  R  E  S  M  K  L  C  G  R  *  R  M  N  S  W  L  I  G  M  V  C  V  Q  K  I  R  N  G  F  L  Y  L  L  Q  Q  I  D  P  L  T  W  M  K  Q  L  L  G  G  F  P  V   : G  *  W  *  T  C  Q  M  L  Q  I  G  R  K  F  W  E  L  F  W  R  R  K  N  *  P  Q  M  S  I  *  K  L  L  L  L  *  R  T  G  I  Q  G  V  I  *  R :   I  C  V  *  A  L  R  I  A  L  L  E  K  F  W  R  R  R  R  R :   R  K  H  W  Q  L  Q  R  A  G  H  H  R  L  C  I  V  V  Q  T  F  V  L  L  T  W  M  I  L  S  M  H  M  S  R :   Y  V  P  V  C  H  Q  S  L  Q  I  *  M  S  F  S  S  G  M  I  Y  M  E  K  E  D  Q  E  R  K  H  L  S  V  T  S  C  R  G  D  M  F  N  Y  I  A  R  H  W  F  I  C  F  P  V  L  Q  P  A  I  T  A  L  R  G  *  S  I  S  G  S  P  K  S  N  W  P  W  P  L  T  P  P  F  V  S  Y  L  V  D  R  I  F  F  Q  L  Q  V  L  K  S  H  P  I  F  S  H  F  *  L  S  S  L  Y  I  *  V  E  *  F  K  K  K  H  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36792" stop="36733"/>
                    <exon start="36649" stop="36476"/>
                    <exon start="36390" stop="36319"/>
                    <exon start="34349" stop="34248"/>
                    <exon start="34172" stop="34083"/>
                    <exon start="33667" stop="33592"/>
                    <exon start="33499" stop="33403"/>
                    <exon start="33273" stop="33204"/>
                    <exon start="33100" stop="32921"/>
                    <exon start="32767" stop="32645"/>
                    <exon start="32568" stop="32485"/>
                    <exon start="32317" stop="32133"/>
                    <exon start="32025" stop="31887"/>
                    <exon start="31803" stop="31744"/>
                    <exon start="31485" stop="31381"/>
                    <exon start="30416" stop="30303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1728</number_coding_nucleotides>
                  <number_encoded_amino_acids>576</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLDSSSNDEIDKLAINELFEVALKESKSGPLVLFIKDIEKSMVGNPEAYAAFKIKLEHLPENVVAIASHAQSDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFGRLHDRSKETPKTMKQLTRLFPNKVTIQIPQDETLLSDWKQKLDRDMETMKSQSNIASIRNVLNRFKINCDDLEILCIKDQALTNESVEKIIGWALSHHLMHKSESAMKETKLAISSESIAYGLSMFQGIQGETKSLKKSLKDVVTENEFEKKLLGDVIPPSDIGVTFNDIGALETVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFTLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDASNREKILGVILAKEELAPNVDLEAIATMTDGYSGSDLKNLCVSAAHCPIREILEKEKKEKTLAIAESRPSPALHSSADIRPLNMDDFKYAHEQVCASVSSESSNMNELLQWNDLYGEGGSRKKTSLSYFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36793" e_stop="36733"/>
            <exon e_start="36649" e_stop="36476"/>
            <exon e_start="36390" e_stop="36319"/>
            <exon e_start="34349" e_stop="34248"/>
            <exon e_start="34172" e_stop="34083"/>
            <exon e_start="33667" e_stop="33592"/>
            <exon e_start="33499" e_stop="33403"/>
            <exon e_start="33273" e_stop="33204"/>
            <exon e_start="33100" e_stop="32921"/>
            <exon e_start="32767" e_stop="32485"/>
            <exon e_start="32317" e_stop="32133"/>
            <exon e_start="32025" e_stop="31887"/>
            <exon e_start="31803" e_stop="31744"/>
            <exon e_start="31485" e_stop="31381"/>
            <exon e_start="30416" e_stop="30037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.178" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.789" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="0.903" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.580" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36793" e_stop="36733" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36732" i_stop="36650" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36649" e_stop="36476" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.929">
            <gDNA_intron_boundary i_start="36475" i_stop="36391" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36390" e_stop="36319" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36318" i_stop="34350" i_length="1969"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34349" e_stop="34248" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.546">
            <gDNA_intron_boundary i_start="34247" i_stop="34173" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34172" e_stop="34083" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.839" acc_prob="0.178">
            <gDNA_intron_boundary i_start="34082" i_stop="33668" i_length="415"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33667" e_stop="33592" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.961">
            <gDNA_intron_boundary i_start="33591" i_stop="33500" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33499" e_stop="33403" e_length="97"/>
          </exon>
          <intron i_serial="7" don_prob="0.789" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129"/>
          </intron>
          <exon e_serial="8" e_score="0.971">
            <gDNA_exon_boundary e_start="33273" e_stop="33204" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33100" e_stop="32921" e_length="180"/>
          </exon>
          <intron i_serial="9" don_prob="0.903" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="32767" e_stop="32485" e_length="283"/>
          </exon>
          <intron i_serial="10" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="32317" e_stop="32133" e_length="185"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="32025" e_stop="31887" e_length="139"/>
          </exon>
          <intron i_serial="12" don_prob="0.993" acc_prob="0.580">
            <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31744" e_length="60"/>
          </exon>
          <intron i_serial="13" don_prob="0.743" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="31485" e_stop="31381" e_length="105"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964"/>
          </intron>
          <exon e_serial="15" e_score="0.997">
            <gDNA_exon_boundary e_start="30416" e_stop="30037" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36733"/>
              <exon start="36649" stop="36476"/>
              <exon start="36390" stop="36319"/>
              <exon start="34349" stop="34248"/>
              <exon start="34172" stop="34083"/>
              <exon start="33667" stop="33625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36733"/>
              <exon start="36649" stop="36476"/>
              <exon start="36390" stop="36319"/>
              <exon start="34349" stop="34248"/>
              <exon start="34172" stop="34091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36620" stop="36476"/>
              <exon start="36390" stop="36319"/>
              <exon start="34349" stop="34248"/>
              <exon start="34172" stop="34083"/>
              <exon start="33667" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33625" stop="33592"/>
              <exon start="33499" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33049" stop="32921"/>
              <exon start="32767" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33048" stop="32921"/>
              <exon start="32767" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="32001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32554" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32549" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31950" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272278" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31912" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAG : GTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAA : TCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCA : GATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAG : GACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAAT : GTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAA : GTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG : CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG : GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG : CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGGTACTACTGATGTGGTTTCTGCCATTTCTTTTTTGACTTGCCCTTCTTAAAATGGTTGACAACTTTTTCTTGCCAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG : GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG : GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG : AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG : GAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG : GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGCATATCCTAA</gDNA_template>
            <first_frame> P  S  *  *  L  K  *  *  *  N  *  *  T  C  Y  *  *  T  L  *   : G  C  F  K  R  K  *  K  W  P  S  C  F  V  H  Q  R  H  *  E  V  Y  G  G  *  S  *  G  L  C  C  F  Q  D  *  A  R  A  F  A  R  E  C  C  C  H  S  F  P  C  P  V  G  Q  P  K  G  E   : I  A  S  W  W  L  A  I  Y  K  I  W  K  *  P  N  S  I  A  *  P  C  L  P   : R  *  F  W  *  V  A  *  *  K  Q  R  N  P  Q  D  D  E  A  A  H  T  T  V  S  Q  Q  S  Y  H  T  D  P  S   : G  R  N  L  I  I  R  L  E  A  K  V  R  S  G  Y  G  N  Y  E  I  S  V  K  H  C  K  H  S  Q   : C  F  E  S  I  Q  N  *  L  R  *  P  *  N  S  M  H  K  G  S  S  T  D  K  *  K :   C  *  K  D  N  R  L  G  F  E  S  S  P  Y  A  *  I  *  V  C  Y  E  R  D  E  A  S  Y  L  Q  *  K  :  H  C  L  W  A  Q  Y  V  S  R  H  S  G  *  N  E  E  F  E  E  I  P  Q   : G  R  G  Y  *  K  *  V  R  E  E  T  T  W  G  C  N  S  A  E  *  Y  W  C  Y  F  *  *  H  W  G  V  G  N  C  Q  G  Y  S  E  R  T  G  D  A  A  S  S  A  T  R  I  V  L  *  R  T  A  D  Q   : A  L  Q  G  N  I  A  L  W  T  S  R  Y  W  *  N  N  A  C  E  S  C  C  Y  *  G  W  C  K  L  Y  Q  H  I  N  V  K  H  Y  I  Q  G  T  T  D  V  V  S  A  I  S  F  L  T  C  P  S  *  N  G  *  Q  L  F  L  A  S  G  S  V  K  G  R  S  M  S  K  Q  S  S  H  *  L  V  K  *  L  R  V  L  F  S  L  T  R :   W  T  A  C  W  E  D  E  K  I  R  E  S  M  K  L  C  G  R  *  R  M  N  S  W  L  I  G  M  V  C  V  Q  K  I  R  N  G  F  L  Y  L  L  Q  Q  I  D  P  L  T  W  M  K  Q  L  L  G  G  F  P  V   : G  *  W  *  T  C  Q  M  L  Q  I  G  R  K  F  W  E  L  F  W  R  R  K  N  *  P  Q  M  S  I  *  K  L  L  L  L  *  R  T  G  I  Q  G  V  I  *  R :   I  C  V  *  A  L  R  I  A  L  L  E  K  F  W  R  R  R  R  R :   R  K  H  W  Q  L  Q  R  A  G  H  H  R  L  C  I  V  V  Q  T  F  V  L  L  T  W  M  I  L  S  M  H  M  S  R :   Y  V  P  V  C  H  Q  S  L  Q  I  *  M  S  F  S  S  G  M  I  Y  M  E  K  E  D  Q  E  R  K  H  L  S  V  T  S  C  R  G  D  M  F  N  Y  I  A  R  H  W  F  I  C  F  P  V  L  Q  P  A  I  T  A  L  R  G  *  S  I  S  G  S  P  K  S  N  W  P  W  P  L  T  P  P  F  V  S  Y  L  V  D  R  I  F  F  Q  L  Q  V  L  K  S  H  P  I  F  S  H  F  *  L  S  S  L  Y  I  *  V  E  *  F  K  K  K  H  I  L  </first_frame>
            <second_frame>  R  L  D  S  S  S  N  D  E  I  D  K  L  A  I  N  E  L  F  E  :  V  A  L  K  E  S  K  S  G  P  L  V  L  F  I  K  D  I  E  K  S  M  V  G  N  P  E  A  Y  A  A  F  K  I  K  L  E  H  L  P  E  N  V  V  A  I  A  S  H  A  Q  S  D  S  R  K  E  K  :  S  H  P  G  G  L  L  F  T  K  F  G  S  N  Q  T  A  L  L  D  L  A  F  P  :  D  N  F  G  R  L  H  D  R  S  K  E  T  P  K  T  M  K  Q  L  T  R  L  F  P  N  K  V  T  I  Q  I  P  Q  :  D  E  T  L  L  S  D  W  K  Q  K  L  D  R  D  M  E  T  M  K  S  Q  S  N  I  A  S  I  R  N  :  V  L  N  R  F  K  I  N  C  D  D  L  E  I  L  C  I  K  D  Q  A  L  T  N  E   : S  V  E  K  I  I  G  W  A  L  S  H  H  L  M  H  K  S  E  S  A  M  K  E  T  K  L  A  I  S  S  E  S :   I  A  Y  G  L  S  M  F  Q  G  I  Q  G  E  T  K  S  L  K  K  S  L  K  :  D  V  V  T  E  N  E  F  E  K  K  L  L  G  D  V  I  P  P  S  D  I  G  V  T  F  N  D  I  G  A  L  E  T  V  K  D  T  L  K  E  L  V  M  L  P  L  Q  R  P  E  L  F  C  K  G  Q  L  T  K  :  P  C  K  G  I  L  L  F  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  T  E  A  G  A  N  F  I  N  I  S  M  S  S  I  T  S  K  V  L  L  M  W  F  L  P  F  L  F  *  L  A  L  L  K  M  V  D  N  F  F  L  P  V  V  R  *  R  G  E  V  C  Q  S  S  L  H  I  S  *  *  N  S  S  E  C  Y  F  R  *  R   : G  G  Q  H  V  G  K  T  R  K  S  G  R  A  *  S  Y  A  E  D  E  E  *  I  H  G  *  L  G  W  F  A  Y  K  R  *  G  T  G  S  C  T  C  C  N  K  *  T  L  *  P  G  *  S  S  Y  *  E  A  S  P  *  :  V  N  G  K  L  A  R  C  F  K  *  G  E  N  F  G  S  Y  F  G  E  G  R  I  S  P  K  C  R  F  R  S  Y  C  Y  Y  D  G  R  V  F  R  E  *  F  E   : E  F  V  C  E  R  C  A  L  P  Y  *  R  N  F  G  E  G  E  E   : G  E  N  I  G  N  C  R  E  Q  A  I  T  G  F  A  *  *  C  R  H  S  S  S  *  H  G  *  F  *  V  C  T  *  A   : G  M  C  Q  C  V  I  R  V  F  K  Y  E  *  A  S  P  V  E  *  F  I  W  R  R  R  I  K  K  E  N  I  S  Q  L  L  H  V  E  E  I  C  L  T  I  *  Q  G  I  G  L  F  V  F  L  F  C  N  P  R  *  Q  H  C  V  D  N  P  F  Q  V  P  Q  S  P  I  G  L  G  P  *  P  P  L  L  Y  H  T  *  L  I  G  F  F  S  S  C  K  S  *  S  L  T  Q  F  F  L  I  F  S  S  L  L  C  T  Y  E  L  S  N  L  R  K  S  I  S  * </second_frame>
            <third_frame>   V  L  I  A  Q  V  M  M  K  L  I  N  L  L  L  M  N  S  L  R :   L  L  *  K  K  V  K  V  A  L  L  F  C  S  S  K  T  L  R  S  L  W  W  V  I  L  R  P  M  L  L  S  R  L  S  S  S  I  C  Q  R  M  L  L  P  *  L  P  M  P  S  R  T  A  E  R  R  N :   R  I  L  V  A  C  Y  L  Q  N  L  E  V  T  K  Q  H  C  L  T  L  P  S  Q :   I  I  L  V  G  C  M  I  E  A  K  K  P  P  R  R  *  S  S  S  H  D  C  F  P  T  K  L  P  Y  R  S  L  R :   T  K  P  Y  Y  P  T  G  S  K  S  *  I  G  I  W  K  L  *  N  L  S  Q  T  L  Q  A  F  A  M :   F  *  I  D  S  K  L  I  A  M  T  L  K  F  Y  A  *  R  I  K  H  *  Q  M  K  :  V  L  K  R  *  S  A  G  L  *  V  I  T  L  C  I  N  L  S  L  L  *  K  R  R  S  *  L  S  P  V  K   : A  L  L  M  G  S  V  C  F  K  A  F  R  V  K  R  R  V  *  R  N  P  S  R :   T  W  L  L  K  M  S  S  R  R  N  Y  L  G  M  *  F  R  R  V  I  L  V  L  L  L  M  T  L  G  R  W  K  L  S  R  I  L  *  K  N  W  *  C  C  L  F  S  D  Q  N  C  F  V  K  D  S  *  P  S :   L  A  R  E  Y  C  S  L  D  L  Q  V  L  V  K  Q  C  L  R  K  L  L  L  L  R  L  V  Q  T  L  S  T  Y  Q  C  Q  A  L  H  P  R  Y  Y  *  C  G  F  C  H  F  F  F  D  L  P  F  L  K  W  L  T  T  F  S  C  Q  W  F  G  E  G  E  K  Y  V  K  A  V  F  T  L  A  S  K  I  A  P  S  V  I  F  V  D  E  :  V  D  S  M  L  G  R  R  E  N  P  G  E  H  E  A  M  R  K  M  K  N  E  F  M  V  N  W  D  G  L  R  T  K  D  K  E  R  V  L  V  L  A  A  T  N  R  P  F  D  L  D  E  A  V  I  R  R  L  P  R  R :   L  M  V  N  L  P  D  A  S  N  R  E  K  I  L  G  V  I  L  A  K  E  E  L  A  P  N  V  D  L  E  A  I  A  T  M  T  D  G  Y  S  G  S  D  L  K  :  N  L  C  V  S  A  A  H  C  P  I  R  E  I  L  E  K  E  K  K  :  E  K  T  L  A  I  A  E  S  R  P  S  P  A  L  H  S  S  A  D  I  R  P  L  N  M  D  D  F  K  Y  A  H  E  Q  :  V  C  A  S  V  S  S  E  S  S  N  M  N  E  L  L  Q  W  N  D  L  Y  G  E  G  G  S  R  K  K  T  S  L  S  Y  F  M  *  R  R  Y  V  *  L  Y  S  K  A  L  V  Y  L  F  S  C  S  A  T  R  D  N  S  I  A  W  I  I  H  F  R  F  P  K  V  Q  L  A  L  A  P  D  P  P  F  C  I  I  L  S  *  *  D  F  F  P  V  A  S  P  E  V  S  P  N  F  F  S  F  L  A  L  F  S  V  H  M  S  *  V  I  *  E  K  A  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36792" stop="36733"/>
                    <exon start="36649" stop="36476"/>
                    <exon start="36390" stop="36319"/>
                    <exon start="34349" stop="34248"/>
                    <exon start="34172" stop="34083"/>
                    <exon start="33667" stop="33592"/>
                    <exon start="33499" stop="33403"/>
                    <exon start="33273" stop="33204"/>
                    <exon start="33100" stop="32921"/>
                    <exon start="32767" stop="32609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLDSSSNDEIDKLAINELFEVALKESKSGPLVLFIKDIEKSMVGNPEAYAAFKIKLEHLPENVVAIASHAQSDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFGRLHDRSKETPKTMKQLTRLFPNKVTIQIPQDETLLSDWKQKLDRDMETMKSQSNIASIRNVLNRFKINCDDLEILCIKDQALTNESVEKIIGWALSHHLMHKSESAMKETKLAISSESIAYGLSMFQGIQGETKSLKKSLKDVVTENEFEKKLLGDVIPPSDIGVTFNDIGALETVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVLLMWFLPFLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32634" stop="32485"/>
                    <exon start="32317" stop="32133"/>
                    <exon start="32025" stop="31887"/>
                    <exon start="31803" stop="31744"/>
                    <exon start="31485" stop="31381"/>
                    <exon start="30416" stop="30303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGFCHFFFDLPFLKWLTTFSCQWFGEGEKYVKAVFTLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDASNREKILGVILAKEELAPNVDLEAIATMTDGYSGSDLKNLCVSAAHCPIREILEKEKKEKTLAIAESRPSPALHSSADIRPLNMDDFKYAHEQVCASVSSESSNMNELLQWNDLYGEGGSRKKTSLSYFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33506" e_stop="33403"/>
            <exon e_start="33273" e_stop="33204"/>
            <exon e_start="33100" e_stop="32921"/>
            <exon e_start="32767" e_stop="32645"/>
            <exon e_start="32568" e_stop="32485"/>
            <exon e_start="32317" e_stop="32133"/>
            <exon e_start="32025" e_stop="31887"/>
            <exon e_start="31803" e_stop="31744"/>
            <exon e_start="31485" e_stop="31381"/>
            <exon e_start="30416" e_stop="30037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.789" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.580" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33506" e_stop="33403" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.789" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33402" i_stop="33274" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33273" e_stop="33204" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33203" i_stop="33101" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33100" e_stop="32921" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.953">
            <gDNA_intron_boundary i_start="32920" i_stop="32768" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32767" e_stop="32645" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="32644" i_stop="32569" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32568" e_stop="32485" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32484" i_stop="32318" i_length="167"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32317" e_stop="32133" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32132" i_stop="32026" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32025" e_stop="31887" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.580">
            <gDNA_intron_boundary i_start="31886" i_stop="31804" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31744" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.743" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31743" i_stop="31486" i_length="258"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31485" e_stop="31381" e_length="105"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31380" i_stop="30417" i_length="964"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="30416" e_stop="30037" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33506" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33413" stop="33403"/>
              <exon start="33273" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33222" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33222" stop="33204"/>
              <exon start="33100" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33092" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33030" stop="32921"/>
              <exon start="32767" stop="32645"/>
              <exon start="32568" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32564" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32554" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32549" stop="32485"/>
              <exon start="32317" stop="32133"/>
              <exon start="32025" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31950" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272278" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31912" stop="31887"/>
              <exon start="31803" stop="31744"/>
              <exon start="31485" stop="31381"/>
              <exon start="30416" stop="30046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCAAGGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAG : CATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAG : GACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAG : CCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAG : TGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAG : GTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAG : GTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAG : AATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAG : GAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAG : GTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGCATATCCTAA</gDNA_template>
            <first_frame> C  Q  G  V  E  K  I  I  G  W  A  L  S  H  H  L  M  H  K  S  E  S  A  M  K  E  T  K  L  A  I  S  S  E  S :   I  A  Y  G  L  S  M  F  Q  G  I  Q  G  E  T  K  S  L  K  K  S  L  K  :  D  V  V  T  E  N  E  F  E  K  K  L  L  G  D  V  I  P  P  S  D  I  G  V  T  F  N  D  I  G  A  L  E  T  V  K  D  T  L  K  E  L  V  M  L  P  L  Q  R  P  E  L  F  C  K  G  Q  L  T  K  :  P  C  K  G  I  L  L  F  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  T  E  A  G  A  N  F  I  N  I  S  M  S  S  I  T  S  K  :  W  F  G  E  G  E  K  Y  V  K  A  V  F  T  L  A  S  K  I  A  P  S  V  I  F  V  D  E  :  V  D  S  M  L  G  R  R  E  N  P  G  E  H  E  A  M  R  K  M  K  N  E  F  M  V  N  W  D  G  L  R  T  K  D  K  E  R  V  L  V  L  A  A  T  N  R  P  F  D  L  D  E  A  V  I  R  R  L  P  R  R :   L  M  V  N  L  P  D  A  S  N  R  E  K  I  L  G  V  I  L  A  K  E  E  L  A  P  N  V  D  L  E  A  I  A  T  M  T  D  G  Y  S  G  S  D  L  K  :  N  L  C  V  S  A  A  H  C  P  I  R  E  I  L  E  K  E  K  K  :  E  K  T  L  A  I  A  E  S  R  P  S  P  A  L  H  S  S  A  D  I  R  P  L  N  M  D  D  F  K  Y  A  H  E  Q  :  V  C  A  S  V  S  S  E  S  S  N  M  N  E  L  L  Q  W  N  D  L  Y  G  E  G  G  S  R  K  K  T  S  L  S  Y  F  M  *  R  R  Y  V  *  L  Y  S  K  A  L  V  Y  L  F  S  C  S  A  T  R  D  N  S  I  A  W  I  I  H  F  R  F  P  K  V  Q  L  A  L  A  P  D  P  P  F  C  I  I  L  S  *  *  D  F  F  P  V  A  S  P  E  V  S  P  N  F  F  S  F  L  A  L  F  S  V  H  M  S  *  V  I  *  E  K  A  Y  P   </first_frame>
            <second_frame>  V  K  V  L  K  R  *  S  A  G  L  *  V  I  T  L  C  I  N  L  S  L  L  *  K  R  R  S  *  L  S  P  V  K   : A  L  L  M  G  S  V  C  F  K  A  F  R  V  K  R  R  V  *  R  N  P  S  R :   T  W  L  L  K  M  S  S  R  R  N  Y  L  G  M  *  F  R  R  V  I  L  V  L  L  L  M  T  L  G  R  W  K  L  S  R  I  L  *  K  N  W  *  C  C  L  F  S  D  Q  N  C  F  V  K  D  S  *  P  S :   L  A  R  E  Y  C  S  L  D  L  Q  V  L  V  K  Q  C  L  R  K  L  L  L  L  R  L  V  Q  T  L  S  T  Y  Q  C  Q  A  L  H  P  S :   G  S  V  K  G  R  S  M  S  K  Q  S  S  H  *  L  V  K  *  L  R  V  L  F  S  L  T  R :   W  T  A  C  W  E  D  E  K  I  R  E  S  M  K  L  C  G  R  *  R  M  N  S  W  L  I  G  M  V  C  V  Q  K  I  R  N  G  F  L  Y  L  L  Q  Q  I  D  P  L  T  W  M  K  Q  L  L  G  G  F  P  V   : G  *  W  *  T  C  Q  M  L  Q  I  G  R  K  F  W  E  L  F  W  R  R  K  N  *  P  Q  M  S  I  *  K  L  L  L  L  *  R  T  G  I  Q  G  V  I  *  R :   I  C  V  *  A  L  R  I  A  L  L  E  K  F  W  R  R  R  R  R :   R  K  H  W  Q  L  Q  R  A  G  H  H  R  L  C  I  V  V  Q  T  F  V  L  L  T  W  M  I  L  S  M  H  M  S  R :   Y  V  P  V  C  H  Q  S  L  Q  I  *  M  S  F  S  S  G  M  I  Y  M  E  K  E  D  Q  E  R  K  H  L  S  V  T  S  C  R  G  D  M  F  N  Y  I  A  R  H  W  F  I  C  F  P  V  L  Q  P  A  I  T  A  L  R  G  *  S  I  S  G  S  P  K  S  N  W  P  W  P  L  T  P  P  F  V  S  Y  L  V  D  R  I  F  F  Q  L  Q  V  L  K  S  H  P  I  F  S  H  F  *  L  S  S  L  Y  I  *  V  E  *  F  K  K  K  H  I  L  </second_frame>
            <third_frame>   S  R  C  *  K  D  N  R  L  G  F  E  S  S  P  Y  A  *  I  *  V  C  Y  E  R  D  E  A  S  Y  L  Q  *  K  :  H  C  L  W  A  Q  Y  V  S  R  H  S  G  *  N  E  E  F  E  E  I  P  Q   : G  R  G  Y  *  K  *  V  R  E  E  T  T  W  G  C  N  S  A  E  *  Y  W  C  Y  F  *  *  H  W  G  V  G  N  C  Q  G  Y  S  E  R  T  G  D  A  A  S  S  A  T  R  I  V  L  *  R  T  A  D  Q   : A  L  Q  G  N  I  A  L  W  T  S  R  Y  W  *  N  N  A  C  E  S  C  C  Y  *  G  W  C  K  L  Y  Q  H  I  N  V  K  H  Y  I  Q   : V  V  R  *  R  G  E  V  C  Q  S  S  L  H  I  S  *  *  N  S  S  E  C  Y  F  R  *  R   : G  G  Q  H  V  G  K  T  R  K  S  G  R  A  *  S  Y  A  E  D  E  E  *  I  H  G  *  L  G  W  F  A  Y  K  R  *  G  T  G  S  C  T  C  C  N  K  *  T  L  *  P  G  *  S  S  Y  *  E  A  S  P  *  :  V  N  G  K  L  A  R  C  F  K  *  G  E  N  F  G  S  Y  F  G  E  G  R  I  S  P  K  C  R  F  R  S  Y  C  Y  Y  D  G  R  V  F  R  E  *  F  E   : E  F  V  C  E  R  C  A  L  P  Y  *  R  N  F  G  E  G  E  E   : G  E  N  I  G  N  C  R  E  Q  A  I  T  G  F  A  *  *  C  R  H  S  S  S  *  H  G  *  F  *  V  C  T  *  A   : G  M  C  Q  C  V  I  R  V  F  K  Y  E  *  A  S  P  V  E  *  F  I  W  R  R  R  I  K  K  E  N  I  S  Q  L  L  H  V  E  E  I  C  L  T  I  *  Q  G  I  G  L  F  V  F  L  F  C  N  P  R  *  Q  H  C  V  D  N  P  F  Q  V  P  Q  S  P  I  G  L  G  P  *  P  P  L  L  Y  H  T  *  L  I  G  F  F  S  S  C  K  S  *  S  L  T  Q  F  F  L  I  F  S  S  L  L  C  T  Y  E  L  S  N  L  R  K  S  I  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0022C03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33506" stop="33403"/>
                    <exon start="33273" stop="33204"/>
                    <exon start="33100" stop="32921"/>
                    <exon start="32767" stop="32645"/>
                    <exon start="32568" stop="32485"/>
                    <exon start="32317" stop="32133"/>
                    <exon start="32025" stop="31887"/>
                    <exon start="31803" stop="31744"/>
                    <exon start="31485" stop="31381"/>
                    <exon start="30416" stop="30303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQGVEKIIGWALSHHLMHKSESAMKETKLAISSESIAYGLSMFQGIQGETKSLKKSLKDVVTENEFEKKLLGDVIPPSDIGVTFNDIGALETVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFTLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDASNREKILGVILAKEELAPNVDLEAIATMTDGYSGSDLKNLCVSAAHCPIREILEKEKKEKTLAIAESRPSPALHSSADIRPLNMDDFKYAHEQVCASVSSESSNMNELLQWNDLYGEGGSRKKTSLSYFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 51 chains have been computed
$ 
$ memory statistics:
$ 90656 bytes spliced alignments in total
$ 42 spliced alignments have been stored
$ 2158 bytes was the average size of a spliced alignment
$ 12832 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2566 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 53 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:18:50
-->
