<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:18:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331795" ref_strand="+" ref_description="SGN-E331795 [cTOD-7-C6]">
      <seq>aaatacattactgttgcaacaatttagactattcaaacacaacaaattttcagctgcctccccaaaaatactggaaactttcactccccgcataaaattcaactcaagatgccgccggcagccggcgttgttgcgaattccgatcgagtttcatttggtaattctatggttatccctactcccggtgctccggtaatccaaccagctccaatgacgtcagacacatacgctaaggatgcaattatagcgtggttcagaggtgaattcgccgctgcaaatgcgattattgatgcgctttgtaatcatatcactcagctggaaggcgaccgatcggagtacgaaccggttttctccgcaatacatcgacggagattgaattggatcccgattcttcagatgcagaagtattactcgattgctgatgttacgcttgaactccgtaaactcgctgctaggaaagtgagtgatagagtcgaggtcgccgacgtgaaacagagtgaagtagtgaaggaatcgtttaatgagaagatcaattgtcacgatgaagacacggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="1930" stop="3088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2230" g_stop="2788" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E331795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2230" e_stop="2788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACATTACTGTTGCAACAATTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATG</genome_strand>
        <mrna_strand>AAATACATTACTGTTGCAACAATTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481937" ref_strand="+" ref_description="SGN-E481937 [cSTD-20-M13]">
      <seq>caacaattttagactattcaacataacaaattttcagctgcccccccaaaaatactggaaactttcactcacctcataaaattcaactctgcctgtttcaagatgccgccggcagccggcgttgttgcgaattccgatcgagtttcatttggtaattctatggttatccctactgccggtgctccggtaatccaacaacctccaatgacgtcggaaacattcgctaaggatgcaattatagcgtggttcagaggtgaattcgccgctgcaaatgcaattattgatgcgctttgtaatcatatcactcagctggaaggcgaccgatcggagtatgaaccggttttctccgctatacatcgacggagactgaattggatcccgattcttcagatgcaaaagtattattcgattgctgatgtaacgcttgaactccgtaaactcgctgctagaaaagtgagtgatagagtcgaggtcgccgacgtgaaacagagcgaagtagcgaaggaatcgtttaatgagaagatcaattgtcacgatgaagagtcggaaaatgcangcggtgaggtggtggatgtagattcagttagagatgattcaaatggatcgccggaaagtgagatcacggatacaggatctcaagaagtacagcatttcctggattctgatgaattttgcacaaaccatgaaaactgcgaggcgaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="1946" stop="7100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2246" g_stop="2866" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2867" i_stop="6727" i_length="3861">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6728" g_stop="6800" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="704" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E481937" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2246" e_stop="2866"/>
          <exon e_start="6728" e_stop="6800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAA-TTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACT----------CAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATGCAGGCGGTGAGGTGGTGGATGTAGATTCAGTTAGAGAGGATTCAAATGGATCGCCGGAAAGTGAGATCACGGATACAGGTAAATATTTTAATTATTTTTTTAAAATTATATTAATATTTATTTTTAAATCTTAGAGCCAAGATTCAAGTCCATAAAACAAATAATTAAACGGTGTTTCAATAATCAATAATTTAAAAATTATAAAGAATATTCCTGTATTTCTAAATCTTATATGTAAAATTTTTACTCTGTTTTTCTTCTTATAAATCTCTTGAAAGTGACTTTTCTGTGCTTGTTCTCATACAAATATTTATATTTCTTTGCCATTTATGTCTTTTTTTTAAATATTTGATATTTATGGTTTAATGTGTTCAGGCGATTGTATCTTATTGTTTTATTATTATTATTTTAATCCGTTCGTGATAAAAATCATTTATATTTTATTCGTGAAATTTGATTGAATATATTCTTATAAAACTAAGAGAGGTTAAGTCTTAGCGCAGTATAGGACCCATCTATGAGGCTGATGTTTGCAACAATTTTTTTTTTTGAATTTGGATTTTTATTTAAATATTATTGTATTATTATTTTATCACAACTCAAATTACGTTTTAACCGAGTGTCATTCTTGTAAAATTTCACAAAAATAAAATGTACCGTCAGCTTAGAAACAGAATAGAGAGTATAGTTTCAAAAATAATTTCAAAAGTTATCTTTTTAATGATCTTGAAATTAATTGGAAATTTTGACTTTTTCAGACGTGTTTTAAATGTTTTTATTAGAAAAAGATATTGGTATTAAAAAATATTTTATGTTGTTTCATAGGAAAAAGGTAAAAACTTTATTTTTTAAAATATTATATTATGAAATCGGAGTTAACAGAGAAAATTATTAAATATGTTGATTCTTTCCCGTTGAATCTGACTATTGGGTTTCCATCTCAATCTAATTCATATGGGGGAAAATATCTTATTCTTGAATTTTAAATTATGGAAATTTCTTCTTTTTCCTCAAATTCAGCCAGTCAATATTTGAAGCCTACAAATTTAATTAATATAAATTCGTGCCAAGTATTAAAAAAAGAAAAAAAACTCTCTTGCCGAAGGTTTTTTCTTCTGATGGATAGAATTTTTGTTTCCCCAAAAGCATTGAAAATTCTCTTCTCTTCTCTGTTTAAATAAAGAAATAAGTTTTTCTTTTCAAGCCACCCAATTTGGTGTGATGAAATTCAAGTGAAAGTTGACCACTTCCTTTACAAAAAGAAGACCAAATTATGACTTTTTCAGCTTTACCTTATCGTAAAATCAAATACTTTTTCCGTTTTATTTTATGTGATAATATTTAATTAGATATGGAGTTTAAAAAATATTGAAATTATCCTTCAAAAAAGTAAATTCATTTTTCTCTCCTCATAAATGTACTAGCTACTATTTTTAAAATTAAGTGAGACCAACCAAAGTAAAAAAAAAATTATACCTTCAAATACTTACATATAAGGAAATATAATATCTTTTTGGAATTGATCAAAAAGAAAATAGCAAAAGTATTTTTTCTTTGGAATTGAAAATGAAAACTTTAGTTAAATGCTGTTTGATTTCCCAATGTTTTCTATAGGAAAAAAGTTTTGACAAAACCAATGTGGTGGAAAAGGGGGTGTTGTAATTTTAGGTGTTATTAGGTGCAGCAGAGAATCAGAATTCAGAAACACAGTGAGTTTCACTGTACCAATAAAAAGTACAGTATTTGACTTGATATAAGTTTATTGTTTGATACTCCCTCTTTTCTACTTATTCAATTTTGAATTGACGCACTTATTAAAAAAATAATTAATAATATAATAAACTTATCATTGTATTTCTATTAATTATAAAGTAGATAAAATTTTTTATATTTTTCAAAGTAATTGGTCATTTAATTATGAATATAATAGATATAAAAAGTTATACTTTCTTAATTTATCAAAATGAATAAGTAATTAGGTATAAATATAAAAAAAAGTGAACAAATAATTAGAAATAGAGATAGTACTAAATTTCAAGTATTTTTAATTATAAAAATATAATAATTTTTTTGAGTGGAAAAAAATGTATAATATATATTTAGACGAAGGAGTAATAAAATTTATATAAGAGAAGGCGGCTCTGTTAAATAAATGCCTCGAAGTAGGTATCAGAGACAGAATTGACTCATTAAATTGTTCTTACTTTATTTAGCTGTGATCTCAAATGTGTGATGTTTTTGACGAACGAGCTTTATTGGCTTTAGAGTTTGGCTAACCTAATTCATTAGGTTGGAATTAATTCAAGTTCGCTTTGTGAAAATAATATTAGCTATACTTTCCTCATTTTAGTTTATGTAGCAGCCTAATTAAATAAATAGGCAGCCGTTTTAGAAAAAACAAATGATTCTTTGAGTTTTTAATAAGAAATTCTGTAGGACCATAAAAGTATATCATCATTGAAGAGCTTTCATTCGATAAAGCAAGTGGGCTGAGCTACTTCCATTTCAAGCTGTGTCATAGTTCGACTTGATTTGAAAAAACGATACATGATCAATAAAATGATTGAGAACAACGAAATGGTGATTTTCATGTGTGAAAGCTGTTCACTAGTGAGAATATATTTTCTATTTATAGACGTAAGATCAATAAAAAAAAAAAAAGGTATCGAGGAAAAAATCTAAAATCACCCAGTTGTCTTTGGGGGACTGTTTGATTTTGGTTCACTTTTTGTGTGATCCAATAATTTTTGGGGTTTGGGCCAAGGCACTTGTTGTAGTATTCCGTATTCATTTGGTAGGTTTATAGTGTGGGCCACCTGCCTTGTCTCTCTTTCCTCTCCAAGTGTTAGTGCTGGCTGCTTTCATTTTCTTGTCGCAATGCTATAATGGAATTTTTGGACTTAAATTAGACATATATTAATATTATAAAAAGATTTTGTTGCTTAGTATATGCCTTTAAAAACGAATATGCTCATTAATATTAGCAACACATGGATGGATACCTTTTATACAACATGATCATGTTGCTAACCAAATTATCAATCTACTAGTTCACCTTTAAAAACTATCAGAGAAGTGGGAGTTGATTATAGTTTCTTTAAGTTATTAAATTTTAAATTAATAGTTTATATAGATTTGATAAGTTATTTAAAGACAACTATAAAATTCGAATCAAAATTACTGAGTTCGGCACTTATAAACCGTATCGTTGCTCTCTATCTTTTTGTGTGTTATTAATGGTGGTTAGGTGAACACTAATGGAATTGGAACTGTAACACTTGTTTGGTATCATTATGTGGGGACGTTTTGATTTTGCACTGTTCTTTTACAGTGGCTTAATGTTATAATATGTTGTCATTTCCATCAACATAAACGTGGTCAACTTTAACTAGATACATTTTATGCCATGGTAAAAGAGTATTGTCTTTTTCAGTTTTTCTGTTCTTTTTTTGGTAAGGGACGTAACTTTGCCCGTTTGCCAAGTTCAGCCAGGATTAACACTCTTTAACACCAATGCCTAATATTGTGTTTACAAGAAAAATATTTAACTCATAACCAGAGTAATATGTTTATAGATGATACTTATTAGTTGAAAATATGTGTTTTAGATGTATTAGCACTTATATTGTTGGGTTATAAGGGTACTAAGGTCTACGTTTTGGAAAATTTATGTTTTAATACACTTAACAACTTTGTTAAAGATTGTCTGCAAAAAAACTACTAACTCAGAATGAGTAACAATGGTCATGTCAAATTGTCAATGGACACGTGAAATTGCTTTCATATATGCACCATCAAGGTCTCTTCTTATTGCCAAGACATATGATCAAGCATGTTACAGTGATCCGTTACTTCAACTAACTAGCTAGTGGAATTTTACTTGCATCATTGTGGATAGAGAATATACACATTTTTTAATTGCTTACTTTTATTTGATAGGATCTCAAGAAGTACAGCATTTCGTGGATTCTGATGAATTTTGCACAAACCATGAAAACTGCGAGGCGAGGCA</genome_strand>
        <mrna_strand>CAACAATTTTAGACTATTC-AACATAACAAATTTTCAGCTGCCCCCCCAAAAATACTGGAAACTTTCACTCACCTCATAAAATTCAACTCTGCCTGTTTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTGCCGGTGCTCCGGTAATCCAACAACCTCCAATGACGTCGGAAACATTCGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCAATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTATGAACCGGTTTTCTCCGCTATACATCGACGGAGACTGAATTGGATCCCGATTCTTCAGATGCAAAAGTATTATTCGATTGCTGATGTAACGCTTGAACTCCGTAAACTCGCTGCTAGAAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGCGAAGTAGCGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGAGTCGGAAAATGCANGCGGTGAGGTGGTGGATGTAGATTCAGTTAGAGATGATTCAAATGGATCGCCGGAAAGTGAGATCACGGATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAAGAAGTACAGCATTTCCTGGATTCTGATGAATTTTGCACAAACCATGAAAACTGCGAGGCGAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208844" ref_strand="+" ref_description="SGN-E208844 [cLEC-51-O13]">
      <seq>agatgacaaagggttttgtatcaaaggaaccagtcaaaggacatatggtgaatgttgtgagaggtctcaagttattcgaagacgtttttactccaaatgaaatctctagattagatgaccttgtgaatgaacttcgagttgctggtcaaaatggtgaactctcaggtgaaacttttattctgtacaaccagcaggtgaagggcagcaaaagagagctaattcagcttggtgcaccaatttttgagcatgtaaaagaggacgccacatgtcaaaagagtcacaatgagcccattccagcccttctgcaaggtgtcataaaccacctgattcagtggcatctaatatcagagagtagaaggcctaacagctgcatcatcaacttttttgatgagggggagttttcacagcctttcctgaaaccacctcacttggaacagccagtgtccacccttgtcctagctgactcaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="6512" stop="8318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6812" g_stop="6858" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6951" g_stop="7068" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="165" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7069" i_stop="7466" i_length="398">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7467" g_stop="7577" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="276" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7578" i_stop="7730" i_length="153">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7731" g_stop="7846" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="392" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7938" g_stop="8018" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="473" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E208844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6812" e_stop="6858"/>
          <exon e_start="6951" e_stop="7068"/>
          <exon e_start="7467" e_stop="7577"/>
          <exon e_start="7731" e_stop="7846"/>
          <exon e_start="7938" e_stop="8018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGACAAAGGGTTTTGTATCAAAGGAACCAGTCAAAGGACATATGGCGAGTCCTCCATTTCCTTGTTACTTTACATCCATTTTGGTAGGATATAAATGTTGTGAAGATCTTAAATTTCCCTACATTGTTTCTGGCAGGTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGAGTAAGAAAAAACGCATCTTAATACATAACACTTGTTGTTGCTATTTGTGGTATACAAAACTTGACCATTGTATACCCCCAATTCTCCTCAACTTTAATCTCCAGTTCTTATTCTTTCATACCTATCATAACTTGGAAAAATGCCAACTTTCAGGTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAGGTATTTGCATTTATTCTAGAATTATGTTGGCCTGCAACATTTTTATCAGTATAGAAATGAAGCCTAAATGCTTGTCTGCTGCCTATTTTAGGGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATG</genome_strand>
        <mrna_strand>AGATGACAAAGGGTTTTGTATCAAAGGAACCAGTCAAAGGACATATG............................................................................................GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGA.........................................................................................................................................................GTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAG...........................................................................................GGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330039" ref_strand="+" ref_description="SGN-E330039 [cTOD-5-E15]">
      <seq>aaccagtcaaaggacatatggtgaatgttgtgagaggtctcaagttattcgaagacgtttttactccaaatgaaatctctagattagatgaccttgtgaatgaacttcgagttgctggtcaaaatggtgaactctcaggtggatcctgtgattcgtgacgcttttatagttattgttgtttcctttttggggcgaagttatgagatagtaaaaggacaccttctgtaggtttgctggagcaggtttgagcatttgtttattctttatgactaattgcagctgccttaaaatcattgtttgtgacttggtgcttgaggttgatacctaactttgttttcacttaaacttctcttttgcttataatctgatgaatcaaacaagcaccaaaaaacatcaactaaaattaaactttcttctacttttttggtagccttgtcaagttttgcgataccagcaatgccaattctgatgaactatttacttctccaatatgtgatcttggataagttcctgattgatctgtgactctgtttcaggtgaaacttttattctgtacaaccagcaggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="6539" stop="7800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6839" g_stop="6858" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6951" g_stop="7500" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="570" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E330039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6839" e_stop="6858"/>
          <exon e_start="6951" e_stop="7500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGTCAAAGGACATATGGCGAGTCCTCCATTTCCTTGTTACTTTACATCCATTTTGGTAGGATATAAATGTTGTGAAGATCTTAAATTTCCCTACATTGTTTCTGGCAGGTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAA</genome_strand>
        <mrna_strand>AACCAGTCAAAGGACATATG............................................................................................GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561416" ref_strand="+" ref_description="SGN-E561416 [17404]">
      <seq>attctgtacaaccagcaggtgaagggcagcanaagagagctaaattcagcttggtgcaccaatttttgagcatgtaaaagaggacgccacatgtcagaagagtcacaatgagcccattccagcccttctgcaaggtgtcataaaccacctgattcagtggcatctaatatcagagaatagaagacctaacagctgcatcatcaacttttttgatgagggggagtattcacagcctttcctgaaaccacctcacttggaacagccagtatccacccttgtcctagctgactcaatgatggcatttgggcgaacacttgtatgcgacagtgaagggaactacaaaggctcgctcatgctttctctaaaagaggggtctcttttggtcatgaggggaaacagtgctgatatggccagacatgctatgtgctcatctcctaacaaaagagttactatcacattcttcaaagtcagaacagagatgggaaacaacttttcagaagctgctcctctgactagagccatgaccatatggcaacctggtcttccaacacaatatgcaaccgcaaatagagcacacaatggttatgagccaatggatatgatccccaaatgggggggtgttgttcgatctccggtggttatgctggcaccactgcgtccagtagttatgaatccccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="7178" stop="8935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7478" g_stop="7577" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7578" i_stop="7730" i_length="153">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7731" g_stop="7846" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="217" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7938" g_stop="8092" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="372" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8329" g_stop="8635" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="679" r_length="307" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E561416" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7478" e_stop="7577"/>
          <exon e_start="7731" e_stop="7846"/>
          <exon e_start="7938" e_stop="8092"/>
          <exon e_start="8329" e_stop="8635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCT-AATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGAGTAAGAAAAAACGCATCTTAATACATAACACTTGTTGTTGCTATTTGTGGTATACAAAACTTGACCATTGTATACCCCCAATTCTCCTCAACTTTAATCTCCAGTTCTTATTCTTTCATACCTATCATAACTTGGAAAAATGCCAACTTTCAGGTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAGGTATTTGCATTTATTCTAGAATTATGTTGGCCTGCAACATTTTTATCAGTATAGAAATGAAGCCTAAATGCTTGTCTGCTGCCTATTTTAGGGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGGGTATGTTTTTCATTTCTTTTAGGTGTTTTACATTGATGAAGCTTTTGATCTGTAGTTCAGATGGGTTCAGTAGTTACAATCTTATTTTAGAAATGAATAGACTTTGGCAGAGTTTCAGCCATAACATGAAGTCTTTTCTTCAATGTTTGTTGAAGTTCAATTTGATGATCGTCCCTATAAAACAAATGACTATTCTTATGGTTGGTTTTTTGCTACCTGTTGTTTAATATTTGCAGGTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGGGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGG</genome_strand>
        <mrna_strand>ATTCTGTACAACCAGCAGGTGAAGGGCAGCANAAGAGAGCTAAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAGAAGA.........................................................................................................................................................GTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAATAGAAGACCTAACAGCTGCATCATCAACTTTTTTGATGAG...........................................................................................GGGGAGTATTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTATCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCGCTCATGCTTTCTCTAAAAGAGGG............................................................................................................................................................................................................................................GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAAAGAGTTACTATCACATTCTTCAAAGTCAGAACAGAGATGGGAAACAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTCTTCCAACACAATATGCAACCGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGATCCCCAAATGGGGGGGTGTTGTTCGATCTCCGGTGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302951" ref_strand="+" ref_description="SGN-E302951 [cLEW-26-L11]">
      <seq>agagtagaaggcctaacagctgcatcatcaacttttttgatgagggggagttttcacagcctttcctgaaaccacctcacttggaacagccagtgtccacccttgtcctagctgactcaatgatggcatttgggcgaacacttgtatgcgacagtgaagggaactacaaaggctctctcatgctttctctaaaagaagggtctcttttggtcatgaggggaaacagtgctgatatggccagacatgctatgtgctcatctcctaacaagagagttacgattacattcttcaaagtcagaacagagatgggaaccaacttttcagaagctgctcctctgactagagccatgaccatatggcaacctggtgttccaacacaatatgcaactgcaaatagagcacacaatggttatgagccaatggatatggtccccaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="7503" stop="8870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7803" g_stop="7846" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7938" g_stop="8092" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="199" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8329" g_stop="8570" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="441" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E302951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7803" e_stop="7846"/>
          <exon e_start="7938" e_stop="8092"/>
          <exon e_start="8329" e_stop="8570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAGGTATTTGCATTTATTCTAGAATTATGTTGGCCTGCAACATTTTTATCAGTATAGAAATGAAGCCTAAATGCTTGTCTGCTGCCTATTTTAGGGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGGGTATGTTTTTCATTTCTTTTAGGTGTTTTACATTGATGAAGCTTTTGATCTGTAGTTCAGATGGGTTCAGTAGTTACAATCTTATTTTAGAAATGAATAGACTTTGGCAGAGTTTCAGCCATAACATGAAGTCTTTTCTTCAATGTTTGTTGAAGTTCAATTTGATGATCGTCCCTATAAAACAAATGACTATTCTTATGGTTGGTTTTTTGCTACCTGTTGTTTAATATTTGCAGGTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGG</genome_strand>
        <mrna_strand>AGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAG...........................................................................................GGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGG............................................................................................................................................................................................................................................GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561315" ref_strand="+" ref_description="SGN-E561315 [17287]">
      <seq>cagctgcattatcacttttttgatgagggggagtattcacagcctttcctgaaaccacctcacttggaacagccagtgtccacccttgtcctagctgactcaatgatggcatttgggcgaacacttgtatgcgacagtgaagggaactacaaaggctcgctcatgctttctctaaaagaggggtctcttttggtcatgaggggaaacagtgctgatatggccagacatgctatgtgctcatctcctaacaaaagagttactatcacattcttcaaagtcagaacagagatgggaaacaacttttcagaagctgctcctctgactagagccatgaccatatggcaacctggtgttccaacacaatatgcaaccgcaaatagagcacacaatggttatgagccaatggatatgatccccaaatgggggggtgttgttcgatctccggtggttatgctggcaccactgcgtccagtagttatgaatccccggagggctcctcgtggtggtactggtgtatttctgccatggaatggtggatccagaaaacctgctaagcatcttccaccgcgtgctcaaagaggacggttccttgcactacctccccctggtgactcgcctaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="7634" stop="9070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7819" g_stop="7846" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7938" g_stop="8092" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="182" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8329" g_stop="8770" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="624" r_length="442" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E561315" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7819" e_stop="7846"/>
          <exon e_start="7938" e_stop="8092"/>
          <exon e_start="8329" e_stop="8770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGCATCATCAACTTTTTTGATGAGGTATTTGCATTTATTCTAGAATTATGTTGGCCTGCAACATTTTTATCAGTATAGAAATGAAGCCTAAATGCTTGTCTGCTGCCTATTTTAGGGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGGGTATGTTTTTCATTTCTTTTAGGTGTTTTACATTGATGAAGCTTTTGATCTGTAGTTCAGATGGGTTCAGTAGTTACAATCTTATTTTAGAAATGAATAGACTTTGGCAGAGTTTCAGCCATAACATGAAGTCTTTTCTTCAATGTTTGTTGAAGTTCAATTTGATGATCGTCCCTATAAAACAAATGACTATTCTTATGGTTGGTTTTTTGCTACCTGTTGTTTAATATTTGCAGGTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGGGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCA</genome_strand>
        <mrna_strand>CAGCTGCATTATC-ACTTTTTTGATGAG...........................................................................................GGGGAGTATTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCGCTCATGCTTTCTCTAAAAGAGGG............................................................................................................................................................................................................................................GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAAAGAGTTACTATCACATTCTTCAAAGTCAGAACAGAGATGGGAAACAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACCGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGATCCCCAAATGGGGGGGTGTTGTTCGATCTCCGGTGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTGCCATGGAATGGTGGATCCAGAAAACCTGCTAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418519" ref_strand="+" ref_description="SGN-E418519 [STM-27-B8]">
      <seq>ttttttttttggtgaaaaatgaaaactttaatacaaaattcagcctgttgtttggctaatatacactccatttacctaaagctcagttatctctaaagcctatcacataggtgaacaggtatagcagccaacgcctagtctctacgtaaaaaaaagagaaggaaaaccttagaaaaatcataagaaaaaagaaggcaaattcatgctcactcattgtacacagcaggagaaagccccttcagctacaaagggtatttaaattaaagacttcaaactggagaatctatggggatttgccatcaagatccaaacttggttctgaagcggtctctgatttaggcgagtcaccagggggaggtagtgcaaggaaccgtcctctttgagcacgcggtggaagatgcttagcaggttttctggatccaccattccatggcagaaatacaccagtaccaccacgaggagccctccggggattcataactactggacgcagtggtgccagcataaccaccggagatcgaacaacacccccccatttggggatcatatccattggctcataaccattgtgtgctctatttgcggttgcatattgtgttggaacaccaggttgccatatggtcatggctctagtcagaggagcagcttctgaaaagttgtttcccatctctgttctgactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="9388" stop="8118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9088" g_stop="8418" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="684" r_length="675" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E418519" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9088" e_stop="8418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTAAAAACGAAAACTTTAATACAAAATTCAGCCTGTTGTTTGGCTAATATACACTCCATTTACCT-AAGCTCAGTTATCTCTAAAGCCTATCACATAGGTGAACAGGTATAGTAGCCAACGCCTAGTCTCTACGTAAATAAAAAGAGAAGGAAAACCTTTGAAAACCCATAAGAAAAAAGAAAGCGAATTCATGCTCACTCATTGTACACAGTAGGAGAAAGCCCCTTCAGCTACAAAGGGTA--T---TTAAAGACTTCAAACTAGAGAATCTATGGTGATTTGCCATCAAGATCCAAACTTGGTTCTGAAGCGGTCTCTGATTTAGGCGAGTCACCAGGGGGAGGTAGTGCAAGGAACCGTCCTCTTTGAGCACGCGGTGGAAGATGCTTTGCAGGTTTTCTGGATCCACCATTCCATGGAAGAAATACACCAGTACCACCACGAGGAGCCCTCCGGGGATTCATAACTACTGGACGCAGTGGTGCCAGCATAACCATTGGAGATCGAACAACACCTCCCCATTTGGGGACCATATCCATTGGCTCATAACCATTGTGTGCTCTATTTGCAGTTGCATATTGTGTTGGAACACCAGGTTGCCATATGGTCATGGCTCTAGTCAGAGGAGCAGCTTCTGAAAAGTTGGTTCCCATCTCTGTTCTGACTTTGA</genome_strand>
        <mrna_strand>TGGTG-AAAAATGAAAACTTTAATACAAAATTCAGCCTGTTGTTTGGCTAATATACACTCCATTTACCTAAAGCTCAGTTATCTCTAAAGCCTATCACATAGGTGAACAGGTATAGCAGCCAACGCCTAGTCTCTACGTAAA-AAAAAGAGAAGGAAAACCTTAGAAAAATCATAAGAAAAAAGAAGGCAAATTCATGCTCACTCATTGTACACAGCAGGAGAAAGCCCCTTCAGCTACAAAGGGTATTTAAATTAAAGACTTCAAACTGGAGAATCTATGGGGATTTGCCATCAAGATCCAAACTTGGTTCTGAAGCGGTCTCTGATTTAGGCGAGTCACCAGGGGGAGGTAGTGCAAGGAACCGTCCTCTTTGAGCACGCGGTGGAAGATGCTTAGCAGGTTTTCTGGATCCACCATTCCATGGCAGAAATACACCAGTACCACCACGAGGAGCCCTCCGGGGATTCATAACTACTGGACGCAGTGGTGCCAGCATAACCACCGGAGATCGAACAACACCCCCCCATTTGGGGATCATATCCATTGGCTCATAACCATTGTGTGCTCTATTTGCGGTTGCATATTGTGTTGGAACACCAGGTTGCCATATGGTCATGGCTCTAGTCAGAGGAGCAGCTTCTGAAAAGTTGTTTCCCATCTCTGTTCTGACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285441" ref_strand="+" ref_description="SGN-E285441 [cLES-10-G17]">
      <seq>ggaggtgttgttcgatctccaatggttatgctggcaccactgcgtccagtagttatgaatccccggagggctcctcgtggtggtactggtgtatttcttccatggaatggtggatccagaaaacctgcaaagcatcttccaccgcgtgctcaaagaggacggttccttgcactacctccccctggtgactcgcctaaatcagagaccgcttcagaaccaagtttggatcttgatggcaaatcaccatagattctctagtttgaagtctttaaataccctttgtagctgaaggggctttctcctactgtgtacaatgagtgagcatgaattcgctttcttttttcttatgggttttcaaaggttttccttctctttttatttacgtagagactaggcgttggctactatacctgttcacctatgtgataggctttagagataactgaacttaagtaaatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="8270" stop="9332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8570" g_stop="9032" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E285441" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8570" e_stop="9032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGT</genome_strand>
        <mrna_strand>GGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAACTTAAGTAAATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296330" ref_strand="+" ref_description="SGN-E296330 [cLET-19-N3]">
      <seq>ttgttcgatctccaatggttatgctggcaccactgcgtccagtagttatgaatccccggagggctcctcgtggtggtactggtgtatttcttccatggaatggtggatccagaaaacctgcaaagcatcttccaccgcgtgctcaaagaggacggttccttgcactacctccccctggtgactcgcctaaatcagagaccgcttcagaaccaagtttggatcttgatggcaaatcaccatagattctctagtttgaagtctttaaataccctttgtagctgaaggggctttctcctactgtgtacaatgagtgagcatgaattcgctttcttttttcttatgggttttcaaaggttttccttctctttttatttacgtagagactaggcgttggctactatacctgttcacctatgtgataggctttagagataactgagcttaggtaaatggagtgtatattagccaaacaacaggctgaattttgtattaaagttttcgtttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="8277" stop="9385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8577" g_stop="9083" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="517"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E296330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8577" e_stop="9083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</genome_strand>
        <mrna_strand>TTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596085" ref_strand="+" ref_description="SGN-E596085 [39372]">
      <seq>gttttccttctcttttttttacgtagagactaggcgttgagtctgctatacctgttcacctatgtgataggctttagagataactgagctttaggtaaatggagtgtatattagccaaacaacaggctgaattttgtattaaagttttcattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="8630" stop="9383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8930" g_stop="9083" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E596085" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8930" e_stop="9083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTG-G-CTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGC-TTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</genome_strand>
        <mrna_strand>GTTTTCCTTCTCTTTTT-TTTACGTAGAGACTAGGCGTTGAGTCTGCTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415168" ref_strand="+" ref_description="SGN-E415168 [STM-20-J20]">
      <seq>tttttttttttgtctatgaacatcattgctttcattcaaatttcccaagtatacaaagggcacaaaacatgttcacataataaatgaacagctggacatggaaatcgcgactattaaactaaaagttcaataaaaagaatgaaaatcatgaagcacaattaaacaaactgcctgaggcaataaacattatcttactttactaggtttcaagctttaaagtttagttcttgagttctgttgtgtgctgactgctttgacatccagctttctgcatatcttaagcttgattcacaatctaaaagctttcacaggctcatcatcatcttcaatcccaactcaaatcctcgtcgtcctcttcaacactaagcctcttcctcaaatcatctctattggagcttgcaacatgagaagttgcctttttgtcatcaataccgtcaacgtcctcaatctcatcccagtccaagtcgtcctcatcggccccagtcttttgacttgaagcaatagagacatcaccatctttgcctgatccatccttatcacttttcccctctgaaccttttactactccttcctcctttttaaccagaggagtaacttcagtggcttctttcttactatctttgttattttcaactgattctacgaccttgctcttgccaccaccatctacattagactgattctcttcttttctatcaacagcagctgaacttatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="10153" stop="11462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10453" g_stop="11162" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="720" r_length="713" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E415168" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10453" e_stop="11162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCTATGAACATCATTGCTTTCATTCAAATTTCCCAAGTATACAAAGGGCACAAAACATGTTCACATTATAAATGAACAGCTAGACATGGAAATCGCGACTACTAAGCTAAAAGTAAAATGAAAAGAATGAAAATCATGAAGCACAATTAAACAAACTGCCTGAGACAATAAACGTTATCTTACTTTACTAGGTTTCAAGCTTTAAAGTTTAATTCTTGAGTTCTGTTGTACGTTGACAGCATTGACATCCAGCTTTCTGCATA--TT----TTGAATGACGATCAAAAAGCTTTCACAGGGTTGTCATCATCTTCAATCCCAACTCAAATCCTCATCGTCCTCTTCAACACTAAGCCTCTTCCTCAAATCATCTCTATTGGTGCTTGCAACATGAGAAGTTGCCTTTTTGTCATCAATACCGTCAACGTCCTCAATCTCATCCCAATCCAAGTCGTCCTCATCGGCCCCAGTCGTCTTTTGACTTGAAGCAATAGGGACATCACCATCTTTGCCTGATCCATCCTTATCACTTTTCCCCTCTGAACCTTTTACTACCTCTTCCTCCTTTTTAACCAGAGGAGTAACTTCAGCGTCTTCTTTCTTACTATCTTTGTTACTCCCAACTGATTCTACGACCTTACTCTTGCCACCACCATCTACATTAGGCTGACTCTCTTCTTTCCTATCAACAGAAGCCGAACTTATAGTTT</genome_strand>
        <mrna_strand>TTTTGTCTATGAACATCATTGCTTTCATTCAAATTTCCCAAGTATACAAAGGGCACAAAACATGTTCACATAATAAATGAACAGCTGGACATGGAAATCGCGACTATTAAACTAAAAGTTCAATAAAAAGAATGAAAATCATGAAGCACAATTAAACAAACTGCCTGAGGCAATAAACATTATCTTACTTTACTAGGTTTCAAGCTTTAAAGTTTAGTTCTTGAGTTCTGTTGTGTGCTGACTGCTTTGACATCCAGCTTTCTGCATATCTTAAGCTTGATTCACAATCTAAAAGCTTTCACAGGCTCATCATCATCTTCAATCCCAACTCAAATCCTCGTCGTCCTCTTCAACACTAAGCCTCTTCCTCAAATCATCTCTATTGGAGCTTGCAACATGAGAAGTTGCCTTTTTGTCATCAATACCGTCAACGTCCTCAATCTCATCCCAGTCCAAGTCGTCCTCATCGGCCCCA---GTCTTTTGACTTGAAGCAATAGAGACATCACCATCTTTGCCTGATCCATCCTTATCACTTTTCCCCTCTGAACCTTTTACTACTCCTTCCTCCTTTTTAACCAGAGGAGTAACTTCAGTGGCTTCTTTCTTACTATCTTTGTTATTTTCAACTGATTCTACGACCTTGCTCTTGCCACCACCATCTACATTAGACTGATTCTCTTCTTTTCTATCAACAGCAGCTGAACTTATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424020" ref_strand="+" ref_description="SGN-E424020 [STM-42-N4]">
      <seq>acaaaaccaattggtttttgtctatgaacttcaccgctttcattcaaatttcccaagtatacaaagggcacaaaacatgttcacataataaatgaacagctggacatggaaatcgcgactattaaactaaaagttcaataaaaagaatgaaaatcatgaagcacaattaaacaaactgcctgaggcaataaacattatcttactttactaggtttcaagctttaaagtttagttcttgagttctgttgtgtgctgactgctttgacatccagctttctgcatatcttaagcttgattcacaatctaaaagctttcacaggctcatcatcatcttcaatcccaactcaaatcctcgtcgtcctcttcaacactaagcctcttcctcaaatcatctctattggagcttgcaacatgagaagttgcctttttgtcatcaataccgtcaacgtcctcaatctcatcccagtccaagtcgtcctcatcggccccagtcttttgacttgaagcaatagagacatcaccatctttgcctgatccatccttatcacttttcccctctgaaccttttactactccttcctcctttttaaccagaggagtaacttcagtgtcttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="10147" stop="11353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10453" g_stop="11053" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="619" r_length="604" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E424020" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10453" e_stop="11053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCTATGAACATCATTGCTTTCATTCAAATTTCCCAAGTATACAAAGGGCACAAAACATGTTCACATTATAAATGAACAGCTAGACATGGAAATCGCGACTACTAAGCTAAAAGTAAAATGAAAAGAATGAAAATCATGAAGCACAATTAAACAAACTGCCTGAGACAATAAACGTTATCTTACTTTACTAGGTTTCAAGCTTTAAAGTTTAATTCTTGAGTTCTGTTGTACGTTGACAGCATTGACATCCAGCTTTCTGCATA--TT----TTGAATGACGATCAAAAAGCTTTCACAGGGTTGTCATCATCTTCAATCCCAACTCAAATCCTCATCGTCCTCTTCAACACTAAGCCTCTTCCTCAAATCATCTCTATTGGTGCTTGCAACATGAGAAGTTGCCTTTTTGTCATCAATACCGTCAACGTCCTCAATCTCATCCCAATCCAAGTCGTCCTCATCGGCCCCAGTCGTCTTTTGACTTGAAGCAATAGGGACATCACCATCTTTGCCTGATCCATCCTTATCACTTTTCCCCTCTGAACCTTTTACTACCTCTTCCTCCTTTTTAACCAGAGGAGTAACTTCAGCGTCTTCTTTC</genome_strand>
        <mrna_strand>TTTTGTCTATGAACTTCACCGCTTTCATTCAAATTTCCCAAGTATACAAAGGGCACAAAACATGTTCACATAATAAATGAACAGCTGGACATGGAAATCGCGACTATTAAACTAAAAGTTCAATAAAAAGAATGAAAATCATGAAGCACAATTAAACAAACTGCCTGAGGCAATAAACATTATCTTACTTTACTAGGTTTCAAGCTTTAAAGTTTAGTTCTTGAGTTCTGTTGTGTGCTGACTGCTTTGACATCCAGCTTTCTGCATATCTTAAGCTTGATTCACAATCTAAAAGCTTTCACAGGCTCATCATCATCTTCAATCCCAACTCAAATCCTCGTCGTCCTCTTCAACACTAAGCCTCTTCCTCAAATCATCTCTATTGGAGCTTGCAACATGAGAAGTTGCCTTTTTGTCATCAATACCGTCAACGTCCTCAATCTCATCCCAGTCCAAGTCGTCCTCATCGGCCCCA---GTCTTTTGACTTGAAGCAATAGAGACATCACCATCTTTGCCTGATCCATCCTTATCACTTTTCCCCTCTGAACCTTTTACTACTCCTTCCTCCTTTTTAACCAGAGGAGTAACTTCAGTGTCTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732333" ref_strand="+" ref_description="SGN-E732333 [LB01DE11]">
      <seq>cgattaaggtcgtagaatcagttgggagtaacaaagatagtaagaaagaagacgctgaagttactcctctggttaaaaaggaggaagaggtagtaaaaggttcagaggggaaaagtgataaggatggatcaggcaaagatggtgatgtccctattgcttcaagtcaaaagacgactggggccgatgaggacgacttggattgggatgagattgaggacgttgacggtattgatgacaaaaaggcaacttctcatgttgcaagcaccaatagagatgatttgaggaagaggcttagtgttgaagaggacgatgaggatttgagttgggattgaagatgatgacaaccctgtgaaagctttttgatcgtcattcaaaatatgcagaaagctggatgtcaatgctgtcaacgtacaacagaactcaagaattaaactttaaagcttgaaacctagtaaagtaagataacgtttattgtctcaggcagtttgtttaattgtgcttcatgattttcattcttttcattttacttttagcttagtagtcgcgatttccatgtctagctgttcatttataatgtgaacatgttttgtgccctttgtatacttgggaaatttgaatgaaagcaatgatgttcatagacnnnnnnnanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11395" stop="10157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11096" g_stop="10454" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="659"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E732333" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11096" e_stop="10454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACAAA</genome_strand>
        <mrna_strand>CGATTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732031" ref_strand="+" ref_description="SGN-E732031 [LB01AD05]">
      <seq>acatatagtaagaaagaagacgctgaagttactcctctggttaaaaaggaggaagaggtagtaaaaggttcagaggggaaaagtgataaggatggatcaggcaaagatggtgatgtccctattgcttcaagtcaaaagacgactggggccgatgaggacgacttggattgggatgagattgaggacgttgacggtattgatgacaaaaaggcaacttctcatgttgcaagcaccaatagagatgatttgaggaagaggcttagtgttgaagaggacgatgaggatttgagttgggattgaagatgatgacaaccctgtgaaagctttttgatcgtcattcaaaatatgcagaaagctggatgtcaatgctgtcaacgtacaacagaactcaagaattaaactttaaagcttgaaacctagtaaagtaagataacgtttattgtctcaggcagtttgtttaattgtgcttcatgattttcattcttttcattttacttttagcttagtagtcgcgatttccatgtctagctgttcatttataatgtgaacatgttttgtgccctttgtatacttgggaaatttgaatgaaagcaatgatgttcatagacnannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11364" stop="10155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11064" g_stop="10454" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="628"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E732031" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11064" e_stop="10454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACAAA</genome_strand>
        <mrna_strand>ACATATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424019" ref_strand="+" ref_description="SGN-E424019 [STM-42-N4]">
      <seq>gaaagaagacactgaagttactcctctggttaaaaaggaggaaggagtagtaaaaggttcagaggggaaaagtgataaggatggatcaggcaaagatggtgatgtctctattgcttcaagtcaaaagactggggccgatgaggacgacttggactgggatgagattgaggacgttgacggtattgatgacaaaaaggcaacttctcatgttgcaagctccaatagagatgatttgaggaagaggcttagtgttgaagaggacgacgaggatttgagttgggattgaagatgatgatgagcctgtgaaagcttttagattgtgaatcaagcttaagatatgcagaaagctggatgtcaaagcagtcagcacacaacagaactcaagaactaaactttaaagcttgaaacctagtaaagtaagataatgtttattgcctcaggcagtttgtttaattgtgcttcatgattttcattctttttattgaacttttagtttaatagtcgcgatttccatgtccagctgttcatttattatgtgaaacatgttttgtgccctttgtatacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11353" stop="10189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11053" g_stop="10489" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E424019" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11053" e_stop="10489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTC-A----AA-ATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTG-AACATGTTTTGTGCCCTTTGTATACTTGGG</genome_strand>
        <mrna_strand>GAAAGAAGACACTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGGAGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCTCTATTGCTTCAAGTC-AAA-A-GACTGGGGCCGATGAGGACGACTTGGACTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCTCCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGACGAGGATTTGAGTTGGGATTGAAGATGATGATGAGCCTGTGAAAGCTTTTAGATTGTGAATCAAGCTTAAGATATGCAGAAAGCTGGATGTCAAAGCAGTCAGCACACAACAGAACTCAAGAACTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAATGTTTATTGCCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTTATTGAACTTTTAGTTTAATAGTCGCGATTTCCATGTCCAGCTGTTCATTTATTATGTGAAACATGTTTTGTGCCCTTTGTATACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708875" ref_strand="+" ref_description="SGN-E708875 [FA42AA10]">
      <seq>ccattataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgctaataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacgcaggattcaaccaacgttgcgaaggaagtgcctactaataaaagtgaaccaaacaagcaggattcgaccaacgctgtaaaacaggacgaatcacaaactataagttcggcttctgttgataggaaagaagagagtcagcctaatgtagatggtggtggcaagagtaaggtcgtagaatcagttgggagtaacaaagatagtaagaaagaagacgctgaagttactcctctggttaaaaaggaggaagaggtagtaaaaggttcagaggggaaaagtgataaggatggatcaggcaaagatggtgatgtccctattgcttcaagtcaaaagacgactggggccgatgaggacgacttggattgggatgagattgaggacgttgacggtattgatgacaaaaaggcaacttctcatgttgcaagcaccaatagagatgatttgaggaagaggcttagtgttgaagaggacgatgaggatttgagttgggattgaagatgatgacaaccctgtgaaagctttttgatcgtcattcaaaatatgcagaaagctggatgtcaatgctgtcaacgtacaacagaactcaagaattaaactttaaagcttgaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11779" stop="10347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11479" g_stop="10647" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E708875" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11479" e_stop="10647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCT</genome_strand>
        <mrna_strand>CCATTATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346232" ref_strand="+" ref_description="SGN-E346232 [cTOF-23-C16]">
      <seq>tttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgctaataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacgcaggattcaaccaacgttgcgaaggaagtgcctactaataaaagtgaaccaaacaagcaggattcgaccaacgctgtaaaacaggacgaatcacaaactataagttcggcttctgttgataggaaagaagagagtcagcctaatgtagatggtggtggcaagagtaaggtcgtagaatcagttgggagtaacaaagatagtaagaaagaagacgctgaagttactcctctggttaaaaaggaggaagaggtagtaaaaggttcagaggggaaaagtgatagggatggatcangcanagatggtgatgtccctattgcttcaagtcaaaagacgactggggccgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11959" stop="10609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11659" g_stop="10909" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E346232" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11659" e_stop="10909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAG</genome_strand>
        <mrna_strand>TTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAGGGATGGATCANGCANAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341555" ref_strand="+" ref_description="SGN-E341555 [cTOE-23-D5]">
      <seq>ttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgctaataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacgcaggattcaaccaacgttgcgaaggaagtgcctactaataaaagtgaaccaaacaagcaggattcgaccaacgctgtaaaacaggacgaatcacaaactataagttcggcttctgttgataggaaagaagagagtcagcctaatgtagatggtggtggcaagagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11936" stop="10791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11636" g_stop="11091" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E341555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11636" e_stop="11091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTA</genome_strand>
        <mrna_strand>TTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238133" ref_strand="+" ref_description="SGN-E238133 [cLED-22-F12]">
      <seq>taatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgctaataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacgcaggattcaaccaacgttgcgaaggaagtgcctactaataaaagtgaaccaaacaagcaggattcgaccaacgctgtaaaacaggacgaatcacaaactataagttcggcttctgttgataggaaagaagagagtcagcctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11917" stop="10812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11617" g_stop="11112" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E238133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11617" e_stop="11112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATG</genome_strand>
        <mrna_strand>TAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240244" ref_strand="+" ref_description="SGN-E240244 [cLED-25-J11]">
      <seq>taatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgctaataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacgcaggattcaaccaacgttgcgaaggaagtgcctactaataaaagtgaaccaaacaagcaggattcgaccaacgctgtaaaacaggacgaatcacaaactataagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11917" stop="10849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11617" g_stop="11149" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E240244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11617" e_stop="11149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCG</genome_strand>
        <mrna_strand>TAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236244" ref_strand="+" ref_description="SGN-E236244 [cLED-20-N23]">
      <seq>taatgagacttttttttgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgcttataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="11917" stop="10957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11617" g_stop="11257" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E236244" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11617" e_stop="11257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACG</genome_strand>
        <mrna_strand>TAATGAGACTTTTTTTTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTTATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476751" ref_strand="+" ref_description="SGN-E476751 [cSTB-45-J6]">
      <seq>gttctgtatggatcctgaggatttggaggagtataagaaatggaaatctgagtttgagttgaaagagaagagtaaggaagttgagattttgattgaagaaaatgaatctttggaaggtatatacaaaagggttgtgcctaatgaagttgataatgagacattttggtgtcgttatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatagctatagacgatgaagaagaattgtcttgggatgtcgatgatgaagacgataatgaacaagagagcattgccaaatcgaaagtcgatgaaaagggaaaagagggatctgttgttgaaagctctgtcaatgatgtaaagaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12067" stop="11080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11767" g_stop="11379" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E476751" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11767" e_stop="11379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAAT</genome_strand>
        <mrna_strand>GTTCTGTATGGATCCTGAGGATTTGGAGGAGTATAAGAAATGGAAATCTGAGTTTGAGTTGAAAGAGAAGAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGAATCTTTGGAAGGTATATACAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACATTTTGGTGTCGTTATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATAGCTATAGACGATGAAGAAGAATTGTCTTGGGATGTCGATGATGA--A-GACGATAATGAACAAGAGAGCATTGCCAAATCGAAAGTCGATGAAAAGGGAAAAGAGGGATCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726454" ref_strand="+" ref_description="SGN-E726454 [LA11DD11]">
      <seq>gcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccagagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtacaagaagtggaaatctgagtttgatttgaaggaaaatagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagaagcatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaaacagagaacattgccaaatcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12608" stop="11142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12308" g_stop="11442" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E726454" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12308" e_stop="11442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAAT</genome_strand>
        <mrna_strand>GCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAAGCATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAAACAGAGAACATTGCCAAATCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301348" ref_strand="+" ref_description="SGN-E301348 [cLEW-24-D1]">
      <seq>agacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccagagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtacaagaagtggaaatctgagtttgatttgaaggaaaatagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12371" stop="11180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12071" g_stop="11480" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E301348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12071" e_stop="11480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGA</genome_strand>
        <mrna_strand>AGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707725" ref_strand="+" ref_description="SGN-E707725 [FA33DC04]">
      <seq>cgcttcaaaggtgacactttgacagaacactcaaatcaattcttgattccactgcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccagagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtacaagaagtggaaatctgagtttgatttgaaggaaaatagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagangagcatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12661" stop="11182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12361" g_stop="11482" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="880" r_length="880" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E707725" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12361" e_stop="11482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGA-GAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGAT</genome_strand>
        <mrna_strand>CGCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGANGAGC-ATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710979" ref_strand="+" ref_description="SGN-E710979 [FA57CD01]">
      <seq>cttctaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccagagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtacaagaagtggaaatctgagtttgatttgaaggaaaatagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagccacaagagagtgtaagagctaatcttgggaagagagcaatatctatagatgatgaagacaaattgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12595" stop="11198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12295" g_stop="11498" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E710979" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12295" e_stop="11498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTG</genome_strand>
        <mrna_strand>CTTCTAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCCACAAGAGAGTGTAAGAGCTAATCTTGGGAAGAGAGCAATATCTATAGATGATGAAGACAAATTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717685" ref_strand="+" ref_description="SGN-E717685 [FC02BG09]">
      <seq>attggcggccaatcggccgaattcccatggggatccgatggattccactgcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcaaaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccagagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtacaagaagtggaaatctgagtttgatttgaaggaaaatagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggcgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12619" stop="11213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12317" g_stop="11513" g_length="805"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="845" r_length="805" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E717685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12317" e_stop="11513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGA</genome_strand>
        <mrna_strand>GATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAAACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGCGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478188" ref_strand="+" ref_description="SGN-E478188 [cSTD-3-F13]">
      <seq>atcgattcttcattccactgcttcaataatttatggatttcttcaaatccatcttatcagatgatccggaaccggaccctccactacccaaaaagccccaagattcttcaccggaacaatcacctgaaaaggaagttgacccggatcagaatcttgaaaaacccaattcaggatctgattcaaccgccgacgacggcggtgatggtgatgctgatggtggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtactcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgggctgttaaggatcttcctaactcgatcgaggtcggaactacagtcagccacgccattgacggcgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaacccgaaacccccgatgcgaatcggaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccaaagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtataagaaatggaaatctgagtttgagttgaaagagaagagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatatacaaaagggttgtgcctaatgaagttgataatgagacattttggtgtagatatttttataaagtgtataagcttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12603" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12303" g_stop="11567" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="784" r_length="752" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E478188" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12303" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAA-AA--G---G---A--AA-TTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGAT-G-G-TCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCA</genome_strand>
        <mrna_strand>ATGGATTTCTTCAAATCCATCTTATCAGATGATCCGGAACCGGACCCTCCACTACCCAAAAAGCCCCAAGATTCTTCACCGGAACAATCACCTGAAAAGGAAGTTGACCCGGATCAGAATCTTGAAAAACCCAATTCAGGATCTGATTCAACCGCCGACGACGGCGGTGATGGTGATGCTGATGGTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTACTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGGGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACAGTCAGCCACGCCATTGACGGCGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAACCCGAAACCCCCGATGCGAATCGGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAAAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTATAAGAAATGGAAATCTGAGTTTGAGTTGAAAGAGAAGAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATACAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACATTTTGGTGTAGATATTTTTATAAAGTGTATAAGCTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480012" ref_strand="+" ref_description="SGN-E480012 [cSTD-12-O23]">
      <seq>atcgattcttcattccactgcttcaataatttatggatttcttcaaatccatcttatcagatgatccggaaccggaccctccactacccaaaaagccccaagattcttcaccggaacaatcacctgaaaaggaagttgacccggatcagaatcttgaaaaacccaattcaggatctgattcaaccgccgacgacggcggtgatggtgatgctgatggtggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtactcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgggctgttaaggatcttcctaactcgatcgaggtcggaactacagtcagccacgccattgacggcgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaacccgaaacccccgatgcgaatcggaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccaaagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtataagaaatggaaatctgagtttgagttgaaagagaagagtaaggaagttgagattttgattgaagaaaatggatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12603" stop="11357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12303" g_stop="11657" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="694" r_length="662" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E480012" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12303" e_stop="11657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAA-AA--G---G---A--AA-TTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGAT-G-G-TCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTT</genome_strand>
        <mrna_strand>ATGGATTTCTTCAAATCCATCTTATCAGATGATCCGGAACCGGACCCTCCACTACCCAAAAAGCCCCAAGATTCTTCACCGGAACAATCACCTGAAAAGGAAGTTGACCCGGATCAGAATCTTGAAAAACCCAATTCAGGATCTGATTCAACCGCCGACGACGGCGGTGATGGTGATGCTGATGGTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTACTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGGGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACAGTCAGCCACGCCATTGACGGCGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAACCCGAAACCCCCGATGCGAATCGGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAAAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTATAAGAAATGGAAATCTGAGTTTGAGTTGAAAGAGAAGAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575852" ref_strand="+" ref_description="SGN-E575852 [35541]">
      <seq>cttcattccactgcttcaataatttatggatttcttcaaatccatcttatcagatgatccggaaccggaccctccactacccaaaaagccccaagattcttcaccggaacaatcacctgaaaaggaagttgacccggatcagaatcttgaaaaacccaattcaggatctgattcaaccaccgacgacggcggtgatgctgatgctgatggtggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtactcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgggctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagatcatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcggaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatattcaaagtgacccgaatacgttctgtatggatcctgaggatttggaggagtataagaaatggaaatctgaatttgagttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12603" stop="11405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12303" g_stop="11704" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="640" r_length="615" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E575852" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12303" e_stop="11704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAA-AA-G----G---A--AA-TTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATG--G-TCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAG</genome_strand>
        <mrna_strand>ATGGATTTCTTCAAATCCATCTTATCAGATGATCCGGAACCGGACCCTCCACTACCCAAAAAGCCCCAAGATTCTTCACCGGAACAATCACCTGAAAAGGAAGTTGACCCGGATCAGAATCTTGAAAAACCCAATTCAGGATCTGATTCAACCACCGACGACGGCGGTGATGCTGATGCTGATGGTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTACTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGGGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATCATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCGGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATTCAAAGTGACCCGAATACGTTCTGTATGGATCCTGAGGATTTGGAGGAGTATAAGAAATGGAAATCTGAATTTGAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341924" ref_strand="+" ref_description="SGN-E341924 [cTOF-9-H15]">
      <seq>agtctttctctgagagtgggaactgccaactggcaacaacatcctcttcaaaggtgacactttgacagaacactcaaatcaattcttgattccactgcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgttcggagtttcggaggtttgttgaagacattatcaacccgatccgaatcattgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaagtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgatattatatcacaaggtaaagatactctgctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcaggcttgaatctcatttgatgaatatccagagtgacccgaataccttctgggtggatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12704" stop="11451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12404" g_stop="11751" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E341924" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12404" e_stop="11751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACATCCTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTC-GGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTG</genome_strand>
        <mrna_strand>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACATCCTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTCGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCATTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAAGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGATATTATATCACAAGGTAAAGATACTCTGCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCAGGCTTGAATCTCATTTGATGAATATCCAGAGTGACCCGAATACCTTCTGGGTGGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450645" ref_strand="+" ref_description="SGN-E450645 [cSTS-10-A5]">
      <seq>aattgttccgtgaagtagctagtcgggctgttaaagggaatcttcctaactcgatcgaggtcggaacctaccagtcagccacgcccattgacggcgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaacccgaaacccccgatgcgaatcggaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccaaagtgacccgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12317" stop="11469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12017" g_stop="11769" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E450645" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12017" e_stop="11769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTCCGTGAAGTAGCTAGTCGAGCTGTT-AA-GG-ATCTTCCTAACTCGATCGAGGTCGGAA-CTACC-GTCAGCCACG-CCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATA</genome_strand>
        <mrna_strand>AATTGTTCCGTGAAGTAGCTAGTCGGGCTGTTAAAGGGAATCTTCCTAACTCGATCGAGGTCGGAACCTACCAGTCAGCCACGCCCATTGACGGCGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAACCCGAAACCCCCGATGCGAATCGGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAAAGTGACCCGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266943" ref_strand="+" ref_description="SGN-E266943 [cLEI-7-O18]">
      <seq>aaatccatcttatcagatgatcccgaaccggaccctccactacgcaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12591" stop="11489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12291" g_stop="11789" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E266943" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12291" e_stop="11789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAA</genome_strand>
        <mrna_strand>AAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACGCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326159" ref_strand="+" ref_description="SGN-E326159 [cTOC-16-E9]">
      <seq>ccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgatgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagacaaaaaccgaattgttccgtgaagtacctagtcgagctgttaaggatcttcctaactcgatcgaagtcggaactacagtcagccacgccattgacggcgttatctaatcgacaactgagattatatcacgaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcaaatcaaaccttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12605" stop="11526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12305" g_stop="11826" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E326159" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12305" e_stop="11826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATT</genome_strand>
        <mrna_strand>CCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGATGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGACAAAAACCGAATTGTTCCGTGAAGTACCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAAGTCGGAACTACAGTCAGCCACGCCATTGACGGCGTTATCTAATCGACAACTGAGATTATATCACGAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCAAATCAAACCTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341786" ref_strand="+" ref_description="SGN-E341786 [cTOF-9-C12]">
      <seq>agtctttctctgagagtgggaactgccaactggcaacaaccactcctcttcaaaggtgacactttgacagaaccactcaaatcaattcttgattccactgcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaagtcggaactaccgtcagccacgccattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12704" stop="11633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12404" g_stop="11933" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E341786" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12404" e_stop="11933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAA-CA-TCCTCTTCAAAGGTGACACTTTGACAGAA-CACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAG-AATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGA</genome_strand>
        <mrna_strand>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACCACTCCTCTTCAAAGGTGACACTTTGACAGAACCACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAAGTCGGAACTACCGTCAGCCACGCCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303962" ref_strand="+" ref_description="SGN-E303962 [cLEX-4-F22]">
      <seq>agaacactcaaatcaattcttgattccactgcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12638" stop="11726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12338" g_stop="12026" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E303962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12338" e_stop="12026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAA</genome_strand>
        <mrna_strand>AGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547682" ref_strand="+" ref_description="SGN-E547682 [TUS-71-L1]">
      <seq>gccttttggagcctttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatgccaggatttatttggctaatttgatacctaatgaggtgaaacgcgttatttatcttgattctgaccttgtcatggttgatgacatcgcaaagttatggaaggttgatttaggtgacaaggttttggctgcacctgaatattgtcaagcaaatttcaccgtttattttactgaagcgttttggtctgatccttatatgccaagaacatttgaagggcgaaaaccgtgttatttcaacacaggggtgttggtaatggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17154" stop="15833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16854" g_stop="16132" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E547682" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16854" e_stop="16132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGAATTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATTTGAAGGGCGAAAACCGTGTTATTTCAACACGGGGGTGTTGGTAATGGATGTT</genome_strand>
        <mrna_strand>GCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATGCCAGGATTTATTTGGCTAATTTGATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGATTTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATTTGAAGGGCGAAAACCGTGTTATTTCAACACAGGGGTGTTGGTAATGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547689" ref_strand="+" ref_description="SGN-E547689 [TUS-71-L5]">
      <seq>gccttttggagcctttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatgccaggatttatttggctaatttgatacctaatgaggtgaaacgcgttatttatcttgattctgaccttgtcatggttgatgacatcgcaaagttatggaaggttgatttaggtgacaaggttttggctgcacctgaatattgtcaagcaaatttcaccgtttattttactgaagcgttttggtctgatccttatatgccaagaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17154" stop="15884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16854" g_stop="16184" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E547689" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16854" e_stop="16184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGAATTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATT</genome_strand>
        <mrna_strand>GCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATGCCAGGATTTATTTGGCTAATTTGATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGATTTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365170" ref_strand="+" ref_description="SGN-E365170 [cLPP-17-J1]">
      <seq>tttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatgccaggatttatttggctaatttgatacctaatgaggtgaaacgcgttatttatcttgattctgaccttgtcatggttgatgacatcgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17141" stop="16001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16841" g_stop="16301" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E365170" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16841" e_stop="16301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAA</genome_strand>
        <mrna_strand>TTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATGCCAGGATTTATTTGGCTAATTTGATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363325" ref_strand="+" ref_description="SGN-E363325 [cLPP-4-J11]">
      <seq>cttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatgccaggatttatttggctaatttgatacctaatgaggtgaaacgcgttatttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17138" stop="16037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16838" g_stop="16337" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E363325" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16838" e_stop="16337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCT</genome_strand>
        <mrna_strand>CTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATGCCAGGATTTATTTGGCTAATTTGATACCTAATGAGGTGAAACGCGTTATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360011" ref_strand="+" ref_description="SGN-E360011 [cLPP-9-L11]">
      <seq>tctcttcctctccttggcctcctgtctctcttgctctcccatcaatcctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcactgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttatacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatgccaggatttatttggctaatttgatacctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17133" stop="16058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16833" g_stop="16358" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E360011" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16833" e_stop="16358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGA</genome_strand>
        <mrna_strand>TCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTCTCCCATCAATCCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCACTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTATACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATGCCAGGATTTATTTGGCTAATTTGATACCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365026" ref_strand="+" ref_description="SGN-E365026 [cLPP-17-D22]">
      <seq>ccttttggagcctttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17153" stop="16092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16853" g_stop="16392" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E365026" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16853" e_stop="16392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATG</genome_strand>
        <mrna_strand>CCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359710" ref_strand="+" ref_description="SGN-E359710 [cLPP-5-A16]">
      <seq>agcctttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaagtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtcgctatgacactcgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagaccttacatttcatttcctatgggttagacatgaagatgaggcgttttcgagtattaaagcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17145" stop="16092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16845" g_stop="16392" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E359710" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16845" e_stop="16392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATG</genome_strand>
        <mrna_strand>AGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAAGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTCGCTATGACACTCGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACCTTACATTTCATTTCCTATGGGTTAGACATGAAGATGAGGCGTTTTCGAGTATTAAAGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360646" ref_strand="+" ref_description="SGN-E360646 [cLPP-7-D1]">
      <seq>cctttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcatatggacgggtcgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtcgctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgcttcatttcctatgggttagacatgaagatgaggtgttctcgagtattaaagcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17143" stop="16133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16843" g_stop="16433" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E360646" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16843" e_stop="16433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATC</genome_strand>
        <mrna_strand>CCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCATATGGACGGGTCGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTCGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGCTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTCTCGAGTATTAAAGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362105" ref_strand="+" ref_description="SGN-E362105 [cLPP-11-E4]">
      <seq>ttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaagcaacattcccttaccttaatttcaaggtgtatcgatttgatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17134" stop="16155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16834" g_stop="16455" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E362105" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16834" e_stop="16455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTAC</genome_strand>
        <mrna_strand>TTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAAGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360381" ref_strand="+" ref_description="SGN-E360381 [cLPP-8-B22]">
      <seq>ttgacattaatattattactatatcaaatgcaaacagctggatggcctaaaggagcctttcttcttctcttcctctcctaggcctccagtctctcttgctttcccatcaaacctacttgatcacatgcactaacaacgacaacgttaacattcatcaagtgtcagatggactggttgggtcaaactattctgtattccgtgaggccactgcatttcacaatggggacactagtggtaataatcatagaatgcatgtggctatcacactggatgctaattatataagacgtactatggctgcaatgttatcgatataacaacattcaacctgccctgaagacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17198" stop="16254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16898" g_stop="16554" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E360381" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16898" e_stop="16554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATTAATATTATTACTATATCAAATGCAAAGAGCTGGATGGCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTA</genome_strand>
        <mrna_strand>TTGACATTAATATTATTACTATATCAAATGCAAACAGCTGGATGGCCTAAAGGAGCCTTTCTTCTTCTCTTCCTCTCCTAGGCCTCCAGTCTCTCTTGCTTTCCCATCAAACCTACTTGATCACATGCACTAACAACGACAACGTTAACATTCATCAAGTGTCAGATGGACTGGTTGGGTCAAACTATTCTGTATTCCGTGAGGCCACTGCATTTCACAATGGGGACACTAGTGGTAATAATCATAGAATGCATGTGGCTATCACACTGGATGCTAATTATATAAGACGTACTATGGCTGCAATGTTATCGATATAACAACATTCAACCTGCCCTGAAGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745359" ref_strand="+" ref_description="SGN-E745359 [GI|47105719]">
      <seq>gattgtacaagcttggcaaacagggtttaagagaggttttagggtttcttctgcactagttcttcttcttcttccttttgttcacaaaatcagaaaaaaatgagaggaatacagttatctttcagcaacacccaaaagctaagattagaaaaagcattagcgcaattggaatccttttcttcgaagcttaattccaatgccactgtcattgttgcagacaaaattccagtcgacgaagatgctgccctcaaaggacatgggacgttggagatgggcaatgatgttgttgcaagtgtatgtggagtggttgagcgggtgaataagcttgtttatgttagacctttaagggccaggtataagccggagattggtgatattatagtcggccgcgttattgaggttgctccaaagagatggaggttggaaattaatttcagccaagacgctgtactaatgctctcttctatgaatcttccagatggcattcagaggcggcgaacagcagttgatgaactcaatatgcgaagcatatttgtggagaatgatgtcatctgtgctgaagtccgtggtttccaacatgatgggagtctacacctccaagctagaagccaaaagtatggaaagcttgaaagagggaaactactcaaaatccctccatatctagtgaaaaggcgtaaacagcatttccaccatctagatcagtatggagttgacttgatttttggctgcaatggattaatttgggttggggaacacattgatgtaaaagatgtaatggtggaggatcaagtaaataagtccgatccacagaacacccattcatcaagcttaccaggttctagtgaagaaccaactgatacaccactggaaataagacaatatatatgcaggatagcaaatgccatcactgtattctcagctttaggcttcatggttaatttggactccatgatggagacagttaccttgagcttatctttaaaccttggtgtacatgagatgcttgaagcagaattccatgttcgagttgctgagcaagaagctgaacgacggagcacatcaaaaaggaggagatagtttacaactcatcatctacatttgcctttcttggattgtcgattatgcaaaagatagaagagattaggaatctattaagctgaatcgggtagcgctatgtcaccctttaattgaaaaagatctgtaaaagagtttccttctgaatatccccttaaattcacacttttgatttatgtgcattagtaaggagtgtgcagctgaagatcaaagtttttcttcccagcaatgaaaatttttcttatgttttcaaaaaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="21705" stop="27055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22004" g_stop="22254" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22492" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="353" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22570" g_stop="22615" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="399" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22616" i_stop="23366" i_length="751">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23367" g_stop="23456" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="489" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23457" i_stop="24484" i_length="1028">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24485" g_stop="24550" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="555" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24551" i_stop="24745" i_length="195">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24746" g_stop="24814" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="624" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24815" i_stop="26053" i_length="1239">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26054" g_stop="26755" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="1326" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1327" polyA_stop="1350"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E745359" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1326</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22004" e_stop="22254"/>
          <exon e_start="22391" e_stop="22492"/>
          <exon e_start="22570" e_stop="22615"/>
          <exon e_start="23367" e_stop="23456"/>
          <exon e_start="24485" e_stop="24550"/>
          <exon e_start="24746" e_stop="24814"/>
          <exon e_start="26054" e_stop="26755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTACAAGCTTGGCAAACAGGGTTTAAGAGAGGTTTTAGGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAAGTAAGTAGTTGGGGTTCTTCTATATGAATCATTTGTATCTACTCTACAACCCCTTTTTGTTCAAATTAAGAAAATAGGTGTTGATTTCATTTTTCCGATTTTTGGTATCTGACCCATTTTTGTTTGTTGAATGAAGAGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAGGTTTAGTGTTTAAAGTTTGAATTTTTGTTGATTTTAAGCTTGATTTTAAGGTGAAAAAAGGGTTCTTTTTAATGTAGGTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAGGTGAGTCTGATTCCCTGCAATGAGTTTCTTGTCAAGTTTGCTTCTTTCATGTTTAGGTGTTTCATTTGCTGCTAGCTCTTACATCGGTTTCTTCCAAAAATATTGAAAATTGAGTAATCTTTGCTCCTTTTATGTTTAAGTGCTTATAATTAGAAGTTTAATGCTAGTGTATGGACAATTTGTTTCTAGTTGATTGAATCGGTATTTTTGGGTAGTACTGTAGTAGTTAGAAACCTCAATTGATACGAAAGTCGAAACCTGTTGCAATGGTAAAGTTGCTCTCTTTAGTGACTGGTAGGTCATGAGTTCAAGGCTTGGAATCAACTTATTTTCAATCTACCATTTTCCCCTTACCATGCCTAACCCCGGGAGCATCTTGTTCAAAGTTCACTTAGCAAAATGCAACTCTCTCCTAATGTATCCCCAGGTAATTGTAAGGGATAGGATAGAGAGTTAAATTATTTCCGCTGCTCTTCAGGTTTTCCTAGTATGATCATAAATTCATAATAGCGTGGGTTTTTTCACTCTACCATTTGTTAGAGAAATATATTAGCCTTCACATTAATATATGGATAATCTAATTGTGCATGCCTTTGGTGCTGAATTTCAAAGAAAGGGCACTAAGAGAACATAAAGGAAAAGAACACATGTGTCCTCCTTTTTACTTGTCTCCATTTACTTTGGCAAGAAATATTAATGTTTCTTGCGGTTAGATATATATCTAATGATTATTAATATTCTTGATGTAAAGGTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAGGTTATTGTTTACAATGTCACTAAGCCCATTTGAGCATAATCTCTGAATTGATTTTGGTCCCATGATGTGATGGTTATATTTTCTGGATAATTCACTAGTCAAGATTGTGTAATTTGGAGTCCTTATTGCATCTTGTCTGCATGTAAAGAAACATTTGTAAGGAATCAGTTGAGCACCGAAATCAGGACCTCCTTTATTCTGTGTCACCATATGTACCCACTTGTGACACTGCATATTGAAATCCTAGAGAAAAAAGAGCTGAAAAGATTTTCCTATGGCTGTTTTATATCATTTTTCCAAATTCTTCAGTTTCAACCCCCTCCGCCTCTGTGGCTTAAGACCCTAGTCTATTTCACTTTAGCAGCAGGGAACCAACTTTGCTCCTCTTTGAAGAAGTCATCTCTTTAACTTCCTTTGGTAACATGAATCGAATAGCCCAATGGATCTATAAGTCCAAGATAGCATGGATTCATATGGCCTACCCCAACTTGTTTGGGATCGAGGCACATTTGCTGTGGACCTGTGGTTGTAAAGGATTCACTTCTGCCTTGGAGAGTAAGATGAACTTTGTCCAGCTTTTAACTCTATGCACAATCTCATATTTTAAAGAACACTGCTGTCTCAACATTTAAATAATTAGACCTTCATGGGCAACAAGTTTCTCCCCAATTCCATTCTCTAAATTTATCATAACAGTACAGTGAATTTATCAAACTAGTATAACTTCTATTATTGTTCAATAAATGAGCCCACTGCCTGAAGCTTGCTTAAAGAGATCTGAAGTTCCCAAGGTATTGAAACTAAAGAGTTAGAAGGGTGACATGCCTATAGAAGTTCGATCTTGACTTGTGACTCGACCTGTAGAGCAGATACAACTTTTGAAGTTTGTCCCCTGAAGCAAATATACACTTCCTTTTCCTTTTTGTTTCCCTGAATTTCTGTCATTATGTTGCATTCTTTTAGGTCTTACTTAGTCATGGTCATAGTCAAACTAAAATTAACTACTTCCTCTTATTCTATGATTCCAGAGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGTGTAAGCTCCCCAGCTCCTTTGACTATTTATCAAATTCTTGAAGGGACCATTTTATGTGTGGCATCCATCTGTGGATTATGATGAATGCAATTATGTCTCGTCTGTCCTTACTGATTATATGTGCATGTCATTCTCCTTTTATTTTATTTTATTTTCTGCAAGTATGGTAATCTAAGCGAAATTGTCCATCTTCAGGCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAGGTGTGTTTTCATAATTGAAATTAGAACACTAAATTTTGTTTCAGAGTTATTGTTTTGATTATCAGGTTGGAAATAAGCACCTCATTTTCTCACCTTTTCCTCCTCCTACCTGTTTGACCATAAAAGCTTTGTGTGGGAGTAGGACTGGGATTCAAATTCAATCTCCACAAGGTGGGGGATATACATTTCTAGCATTCACAAGAGATTTTAGGTAGATGGATTTATGGTTAATTAAAACCATGGATTAAACTTTTCCCATTTAAAAAGCGTAAAATAATTTTGCATAATAGCTGGGATGGAGTTGCTTGCTTGTAGGAAGCAGGAAGATGATATGTCTGATGAAATTTTTGAAGTTAATCTTAATTTTCCACGGTCTAACGAGTTCTCTGTCTTGTCCCGGATACACTCTAGACGTGAATAGCACTCAATATCACTATCTAGGCGAACCAAATCCCGATATCTTAAGCATTAATTTGCCACATTTAATAAATCTATTAAGTACCCTAACAATATGATAATTAATTACAAAATAATAAGTATCTTCAAATATTAATTTAAGCTCTTGGCAAAACCCCACAGTAGACCGCATATCAGTGTTCAGGAAAGTGAGTGCAGCAATGAAGCAAAGCGATTCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTCAGCGCTTCATCGCTTAAAGCAAGCTCTTCATTGCTTAAAGCGTGAAGCGGGGCGTTATCGCTTTTTTCCGCTTCACGCTTCCCTGAACACTGCCGCATATATTTTAAACCATGTCTATATTTCAATGGATTAAAATGAATCTGTCTGTGAATATAAAGGACAATATTAGTTAAAACCTCATGGTACAAACGGCAGAAGTTTTACTTAAGCAGATGATCTGACCATAAAGTTCGAATAGAGAATACAAAGGACCTTGACATGATCTGCATTAGATTGTTATTTTGCTTTAAATACTGGCAAGAAGGCCTTTTATATGCTGCTGATATCACCATCACATAGAGCTATACTTTTCAGTTGCTTCTCGTCATGTTACGTCTCTTTTTCTTGGGGTGGTCAGTGGAATGAAATGTGCATTTTTACCTAAGCTTTGCAATTTTTGTTTGTCCCCTTGAATATATTTCAGATTTCAGACATTAATTATCAATTTGTTTGAGAACATATGCTCTGATGATTTGGTGTTTCTAGTGGTTGAGTTCTTCTGAACAATTCTATTTTTCCTTTTTAATAGCTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAATGGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</genome_strand>
        <mrna_strand>GATTGTACAAGCTTGGCAAACAGGGTTTAAGAGAGGTTTTAGGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA........................................................................................................................................AGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAG.............................................................................GTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGT...................................................................................................................................................................................................GCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAATGGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATGATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479913" ref_strand="+" ref_description="SGN-E479913 [cSTD-11-H18]">
      <seq>tggtttcttctgcacaccagttcttcttcttccttctcttcacaaaatcaggaaaaatgaagaggcataccagttatctttcagcaacaccccaaaagcctaagattagaaaagccattagcgccaattggaatccctttcttcaaagcttaattccaatgccactgtcattgttgcagaccaaaattccagtcgacgaaagatgcctgccctcaaaggacatgggaacgttggagaatgggcaacgatgttgttgcaagtgtatgtggagtggttgagcgggttaataagcttgtttatgttagacctttaaggggccaggtataagccggagattggtgatattatagtcggccgtgttattgaggttgctccaaagagatggaggttggaaattaatttcagccaagacgctgtactaatgctctcctcaatgaatcttccagatggtattcagaggcggcgaacagcagttgatgaactcaatatgcgaagcatatttgtggagaatgatgtcatctgtgctgaagtccgtggtttccacatgatgggagtctacacctccaagctagaagccaaaagtatggaaagcttgaaagagggaaactactcaaaatccctccatatctagtgaaaaggcgtaaacagcatttccaccatctagatcagtatggagttgccttgatttttggctgcaatggattaatttgggttggggaacacgttgatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="21799" stop="26496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22045" g_stop="22254" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22492" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="321" r_length="105" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77">
            <donor d_prob="0.438" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22570" g_stop="22615" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="367" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22616" i_stop="23366" i_length="751">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23367" g_stop="23456" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="457" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23457" i_stop="24484" i_length="1028">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24485" g_stop="24550" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="523" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24551" i_stop="24745" i_length="195">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24746" g_stop="24814" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="591" r_length="68" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24815" i_stop="26053" i_length="1239">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26054" g_stop="26196" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="734" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E479913" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22045" e_stop="22254"/>
          <exon e_start="22391" e_stop="22492"/>
          <exon e_start="22570" e_stop="22615"/>
          <exon e_start="23367" e_stop="23456"/>
          <exon e_start="24485" e_stop="24550"/>
          <exon e_start="24746" e_stop="24814"/>
          <exon e_start="26054" e_stop="26196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATA-CAGTTATCTTTCAGCAACA-CCCAAAAG-CTAAGATTAGAAAAAGCATTAGCG-CAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGA-CAAAATTCCAGTCGACG-AAGATG-CTGCCCTCAAGTAAGTAGTTGGGGTTCTTCTATATGAATCATTTGTATCTACTCTACAACCCCTTTTTGTTCAAATTAAGAAAATAGGTGTTGATTTCATTTTTCCGATTTTTGGTATCTGACCCATTTTTGTTTGTTGAATGAAGAGGACATGGG-ACGTTGGAG-ATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAA-GGGCCAGGTTTAGTGTTTAAAGTTTGAATTTTTGTTGATTTTAAGCTTGATTTTAAGGTGAAAAAAGGGTTCTTTTTAATGTAGGTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAGGTGAGTCTGATTCCCTGCAATGAGTTTCTTGTCAAGTTTGCTTCTTTCATGTTTAGGTGTTTCATTTGCTGCTAGCTCTTACATCGGTTTCTTCCAAAAATATTGAAAATTGAGTAATCTTTGCTCCTTTTATGTTTAAGTGCTTATAATTAGAAGTTTAATGCTAGTGTATGGACAATTTGTTTCTAGTTGATTGAATCGGTATTTTTGGGTAGTACTGTAGTAGTTAGAAACCTCAATTGATACGAAAGTCGAAACCTGTTGCAATGGTAAAGTTGCTCTCTTTAGTGACTGGTAGGTCATGAGTTCAAGGCTTGGAATCAACTTATTTTCAATCTACCATTTTCCCCTTACCATGCCTAACCCCGGGAGCATCTTGTTCAAAGTTCACTTAGCAAAATGCAACTCTCTCCTAATGTATCCCCAGGTAATTGTAAGGGATAGGATAGAGAGTTAAATTATTTCCGCTGCTCTTCAGGTTTTCCTAGTATGATCATAAATTCATAATAGCGTGGGTTTTTTCACTCTACCATTTGTTAGAGAAATATATTAGCCTTCACATTAATATATGGATAATCTAATTGTGCATGCCTTTGGTGCTGAATTTCAAAGAAAGGGCACTAAGAGAACATAAAGGAAAAGAACACATGTGTCCTCCTTTTTACTTGTCTCCATTTACTTTGGCAAGAAATATTAATGTTTCTTGCGGTTAGATATATATCTAATGATTATTAATATTCTTGATGTAAAGGTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAGGTTATTGTTTACAATGTCACTAAGCCCATTTGAGCATAATCTCTGAATTGATTTTGGTCCCATGATGTGATGGTTATATTTTCTGGATAATTCACTAGTCAAGATTGTGTAATTTGGAGTCCTTATTGCATCTTGTCTGCATGTAAAGAAACATTTGTAAGGAATCAGTTGAGCACCGAAATCAGGACCTCCTTTATTCTGTGTCACCATATGTACCCACTTGTGACACTGCATATTGAAATCCTAGAGAAAAAAGAGCTGAAAAGATTTTCCTATGGCTGTTTTATATCATTTTTCCAAATTCTTCAGTTTCAACCCCCTCCGCCTCTGTGGCTTAAGACCCTAGTCTATTTCACTTTAGCAGCAGGGAACCAACTTTGCTCCTCTTTGAAGAAGTCATCTCTTTAACTTCCTTTGGTAACATGAATCGAATAGCCCAATGGATCTATAAGTCCAAGATAGCATGGATTCATATGGCCTACCCCAACTTGTTTGGGATCGAGGCACATTTGCTGTGGACCTGTGGTTGTAAAGGATTCACTTCTGCCTTGGAGAGTAAGATGAACTTTGTCCAGCTTTTAACTCTATGCACAATCTCATATTTTAAAGAACACTGCTGTCTCAACATTTAAATAATTAGACCTTCATGGGCAACAAGTTTCTCCCCAATTCCATTCTCTAAATTTATCATAACAGTACAGTGAATTTATCAAACTAGTATAACTTCTATTATTGTTCAATAAATGAGCCCACTGCCTGAAGCTTGCTTAAAGAGATCTGAAGTTCCCAAGGTATTGAAACTAAAGAGTTAGAAGGGTGACATGCCTATAGAAGTTCGATCTTGACTTGTGACTCGACCTGTAGAGCAGATACAACTTTTGAAGTTTGTCCCCTGAAGCAAATATACACTTCCTTTTCCTTTTTGTTTCCCTGAATTTCTGTCATTATGTTGCATTCTTTTAGGTCTTACTTAGTCATGGTCATAGTCAAACTAAAATTAACTACTTCCTCTTATTCTATGATTCCAGAGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGTGTAAGCTCCCCAGCTCCTTTGACTATTTATCAAATTCTTGAAGGGACCATTTTATGTGTGGCATCCATCTGTGGATTATGATGAATGCAATTATGTCTCGTCTGTCCTTACTGATTATATGTGCATGTCATTCTCCTTTTATTTTATTTTATTTTCTGCAAGTATGGTAATCTAAGCGAAATTGTCCATCTTCAGGCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAGGTGTGTTTTCATAATTGAAATTAGAACACTAAATTTTGTTTCAGAGTTATTGTTTTGATTATCAGGTTGGAAATAAGCACCTCATTTTCTCACCTTTTCCTCCTCCTACCTGTTTGACCATAAAAGCTTTGTGTGGGAGTAGGACTGGGATTCAAATTCAATCTCCACAAGGTGGGGGATATACATTTCTAGCATTCACAAGAGATTTTAGGTAGATGGATTTATGGTTAATTAAAACCATGGATTAAACTTTTCCCATTTAAAAAGCGTAAAATAATTTTGCATAATAGCTGGGATGGAGTTGCTTGCTTGTAGGAAGCAGGAAGATGATATGTCTGATGAAATTTTTGAAGTTAATCTTAATTTTCCACGGTCTAACGAGTTCTCTGTCTTGTCCCGGATACACTCTAGACGTGAATAGCACTCAATATCACTATCTAGGCGAACCAAATCCCGATATCTTAAGCATTAATTTGCCACATTTAATAAATCTATTAAGTACCCTAACAATATGATAATTAATTACAAAATAATAAGTATCTTCAAATATTAATTTAAGCTCTTGGCAAAACCCCACAGTAGACCGCATATCAGTGTTCAGGAAAGTGAGTGCAGCAATGAAGCAAAGCGATTCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTCAGCGCTTCATCGCTTAAAGCAAGCTCTTCATTGCTTAAAGCGTGAAGCGGGGCGTTATCGCTTTTTTCCGCTTCACGCTTCCCTGAACACTGCCGCATATATTTTAAACCATGTCTATATTTCAATGGATTAAAATGAATCTGTCTGTGAATATAAAGGACAATATTAGTTAAAACCTCATGGTACAAACGGCAGAAGTTTTACTTAAGCAGATGATCTGACCATAAAGTTCGAATAGAGAATACAAAGGACCTTGACATGATCTGCATTAGATTGTTATTTTGCTTTAAATACTGGCAAGAAGGCCTTTTATATGCTGCTGATATCACCATCACATAGAGCTATACTTTTCAGTTGCTTCTCGTCATGTTACGTCTCTTTTTCTTGGGGTGGTCAGTGGAATGAAATGTGCATTTTTACCTAAGCTTTGCAATTTTTGTTTGTCCCCTTGAATATATTTCAGATTTCAGACATTAATTATCAATTTGTTTGAGAACATATGCTCTGATGATTTGGTGTTTCTAGTGGTTGAGTTCTTCTGAACAATTCTATTTTTCCTTTTTAATAGCTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAA</genome_strand>
        <mrna_strand>TGGTTTCTTCTGCAC-ACCAGTTCTTCTTCTTCCTTCTCTTCACAAAATCAGGAAAAATGAAGAGGCATACCAGTTATCTTTCAGCAACACCCCAAAAGCCTAAGATTAGAAAAGCCATTAGCGCCAATTGGAATCCCTTTCTTCAAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACCAAAATTCCAGTCGACGAAAGATGCCTGCCCTCAA........................................................................................................................................AGGACATGGGAACGTTGGAGAATGGGCAACGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTTAATAAGCTTGTTTATGTTAGACCTTTAAGGGGCCAG.............................................................................GTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGTGTTATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCCTCAATGAATCTTCCAGATGGTATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGT...................................................................................................................................................................................................GCTGAAGTCCGTGGTTTCC-ACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGCCTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACGTTGATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479979" ref_strand="+" ref_description="SGN-E479979 [cSTD-12-G17]">
      <seq>gtttcttctgcaccactagttcttcttcttccttctcttcacaaaatcaggaaaaatgagaggcatacagttatctttcagcaacacccaaaagctaagattagaaaaagcattagcgcaattggaatccctttcttcaaagcttaattccaatgccactgtcattgttgcagacaaaattccagtcgacgaagatgctgccctcaaaggacatgggacgttggagatgggcaacgatgttgttgcaagtgtatgtggagtggttgagcgggttaataagcttgtttatgttagaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="21749" stop="22783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22047" g_stop="22254" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22483" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="300" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E479979" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22047" e_stop="22254"/>
          <exon e_start="22391" e_stop="22483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAAGTAAGTAGTTGGGGTTCTTCTATATGAATCATTTGTATCTACTCTACAACCCCTTTTTGTTCAAATTAAGAAAATAGGTGTTGATTTCATTTTTCCGATTTTTGGTATCTGACCCATTTTTGTTTGTTGAATGAAGAGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTT</genome_strand>
        <mrna_strand>GTTTCTTCTGCACCACTAGTTCTTCTTCTTCCTTCTCTTCACAAAATCAGGAAAA-ATGAGAGGCATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCCTTTCTTCAAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA........................................................................................................................................AGGACATGGGACGTTGGAGATGGGCAACGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTTAATAAGCTTGTTTATGTTAGACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464650" ref_strand="+" ref_description="SGN-E464650 [cPRO-18-N5]">
      <seq>gtttcttctgcaccactagttcttcttcttccttctcttcacaaaatcaggaaaaatgagaggcattcagttatctttcagcaacacccaaaagctaagattagaaaaagcattagcgcaattggaatccctttcttcaaagcttaattccaatgccactgtcattgttgcagacaaaattccagtcgacgaagatgctgccctcaaaggacatgggacgttggagatgggcaatgatgttgttgcaagtgtatgtggagtggttgagcgggtgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="21749" stop="22761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22047" g_stop="22254" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22461" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="278" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E464650" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22047" e_stop="22254"/>
          <exon e_start="22391" e_stop="22461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAAGTAAGTAGTTGGGGTTCTTCTATATGAATCATTTGTATCTACTCTACAACCCCTTTTTGTTCAAATTAAGAAAATAGGTGTTGATTTCATTTTTCCGATTTTTGGTATCTGACCCATTTTTGTTTGTTGAATGAAGAGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATA</genome_strand>
        <mrna_strand>GTTTCTTCTGCACCACTAGTTCTTCTTCTTCCTTCTCTTCACAAAATCAGGAAAA-ATGAGAGGCATTCAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCCTTTCTTCAAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA........................................................................................................................................AGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476910" ref_strand="+" ref_description="SGN-E476910 [cSTB-46-B19]">
      <seq>gagagaactagtctcgagttcttcttcttccttctcttcacaaaatcaggaaaaatgagaggcatacagttatctttcagcaacacccaaaagctaagattagaaaaagcattagcgcaattggaatccctttcttcaaagcttaattccaatgccactgtcattgttgcagacaaaattccagtcgacgaagatgctgccctcaaaggacatgggacgttggagatgggcaacgatgttgctgcaagtgtatgtggagtggttgagcgggttaataagcttgtttatgttagacctttaagggccaggtataagccggagattggtgatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="21799" stop="22896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22066" g_stop="22254" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="206" r_length="188" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22492" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="308" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77">
            <donor d_prob="0.438" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22570" g_stop="22596" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="335" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E476910" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22066" e_stop="22254"/>
          <exon e_start="22391" e_stop="22492"/>
          <exon e_start="22570" e_stop="22596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAAGTAAGTAGTTGGGGTTCTTCTATATGAATCATTTGTATCTACTCTACAACCCCTTTTTGTTCAAATTAAGAAAATAGGTGTTGATTTCATTTTTCCGATTTTTGGTATCTGACCCATTTTTGTTTGTTGAATGAAGAGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAGGTTTAGTGTTTAAAGTTTGAATTTTTGTTGATTTTAAGCTTGATTTTAAGGTGAAAAAAGGGTTCTTTTTAATGTAGGTATAAGCCGGAGATTGGTGATATTAT</genome_strand>
        <mrna_strand>TTCTTCTTCTTCCTTCTCTTCACAAAATCAG-GAAAAATGAGAGGCATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCCTTTCTTCAAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA........................................................................................................................................AGGACATGGGACGTTGGAGATGGGCAACGATGTTGCTGCAAGTGTATGTGGAGTGGTTGAGCGGGTTAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAG.............................................................................GTATAAGCCGGAGATTGGTGATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606346" ref_strand="+" ref_description="SGN-E606346 [22287]">
      <seq>cgatgttgttgcaagtgtatgtggagtggttgagcgggtgaataagcttgtttatgttagacctttaagggccaggtataagccggagattggtgatattatagtcggccgtgttattgaggttgctccaaagagatggaggttggaaattaatttcagccaagacgctgtactaatgctctcctcaatgaatcttccagatggtattcagaggcggcgaacagcagttgatgaactcaatatgcgaagcatatttgtggagaatgatgtcatctgtgctgaagtccgtggtttccaacatgatgggagtctacacctccaagctagaagccaaaagtatggaaagcttgaaagagggaaactactcaaaatccctccatatctagtgaaaaggcgtaaacagcatttccaccatctagatcagtatggagttgacttgatttttggctgcaatggattaatttgggttggggaacacgttgatgtaaaagatgccatgggtggaggatcaagtaaataagtctgatccacagaacagccactcatcaagcttaccaggttctagtgaagaaccaactgatacaccactggaaagaagacaatatatatgcaggatagcaaatgccatcacggtattctcagctttaggcttcatggttaatttggactccgtaatggagacagttaccctgagcttatctttgaaccttggtgtacatgagatgcttgaagcagaattccatgttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="22119" stop="26755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22418" g_stop="22492" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22570" g_stop="22615" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="121" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22616" i_stop="23366" i_length="751">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23367" g_stop="23456" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23457" i_stop="24484" i_length="1028">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24485" g_stop="24550" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="277" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24551" i_stop="24745" i_length="195">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24746" g_stop="24814" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="346" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24815" i_stop="26053" i_length="1239">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26054" g_stop="26455" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="749" r_length="403" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E606346" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22418" e_stop="22492"/>
          <exon e_start="22570" e_stop="22615"/>
          <exon e_start="23367" e_stop="23456"/>
          <exon e_start="24485" e_stop="24550"/>
          <exon e_start="24746" e_stop="24814"/>
          <exon e_start="26054" e_stop="26455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAGGTTTAGTGTTTAAAGTTTGAATTTTTGTTGATTTTAAGCTTGATTTTAAGGTGAAAAAAGGGTTCTTTTTAATGTAGGTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAGGTGAGTCTGATTCCCTGCAATGAGTTTCTTGTCAAGTTTGCTTCTTTCATGTTTAGGTGTTTCATTTGCTGCTAGCTCTTACATCGGTTTCTTCCAAAAATATTGAAAATTGAGTAATCTTTGCTCCTTTTATGTTTAAGTGCTTATAATTAGAAGTTTAATGCTAGTGTATGGACAATTTGTTTCTAGTTGATTGAATCGGTATTTTTGGGTAGTACTGTAGTAGTTAGAAACCTCAATTGATACGAAAGTCGAAACCTGTTGCAATGGTAAAGTTGCTCTCTTTAGTGACTGGTAGGTCATGAGTTCAAGGCTTGGAATCAACTTATTTTCAATCTACCATTTTCCCCTTACCATGCCTAACCCCGGGAGCATCTTGTTCAAAGTTCACTTAGCAAAATGCAACTCTCTCCTAATGTATCCCCAGGTAATTGTAAGGGATAGGATAGAGAGTTAAATTATTTCCGCTGCTCTTCAGGTTTTCCTAGTATGATCATAAATTCATAATAGCGTGGGTTTTTTCACTCTACCATTTGTTAGAGAAATATATTAGCCTTCACATTAATATATGGATAATCTAATTGTGCATGCCTTTGGTGCTGAATTTCAAAGAAAGGGCACTAAGAGAACATAAAGGAAAAGAACACATGTGTCCTCCTTTTTACTTGTCTCCATTTACTTTGGCAAGAAATATTAATGTTTCTTGCGGTTAGATATATATCTAATGATTATTAATATTCTTGATGTAAAGGTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAGGTTATTGTTTACAATGTCACTAAGCCCATTTGAGCATAATCTCTGAATTGATTTTGGTCCCATGATGTGATGGTTATATTTTCTGGATAATTCACTAGTCAAGATTGTGTAATTTGGAGTCCTTATTGCATCTTGTCTGCATGTAAAGAAACATTTGTAAGGAATCAGTTGAGCACCGAAATCAGGACCTCCTTTATTCTGTGTCACCATATGTACCCACTTGTGACACTGCATATTGAAATCCTAGAGAAAAAAGAGCTGAAAAGATTTTCCTATGGCTGTTTTATATCATTTTTCCAAATTCTTCAGTTTCAACCCCCTCCGCCTCTGTGGCTTAAGACCCTAGTCTATTTCACTTTAGCAGCAGGGAACCAACTTTGCTCCTCTTTGAAGAAGTCATCTCTTTAACTTCCTTTGGTAACATGAATCGAATAGCCCAATGGATCTATAAGTCCAAGATAGCATGGATTCATATGGCCTACCCCAACTTGTTTGGGATCGAGGCACATTTGCTGTGGACCTGTGGTTGTAAAGGATTCACTTCTGCCTTGGAGAGTAAGATGAACTTTGTCCAGCTTTTAACTCTATGCACAATCTCATATTTTAAAGAACACTGCTGTCTCAACATTTAAATAATTAGACCTTCATGGGCAACAAGTTTCTCCCCAATTCCATTCTCTAAATTTATCATAACAGTACAGTGAATTTATCAAACTAGTATAACTTCTATTATTGTTCAATAAATGAGCCCACTGCCTGAAGCTTGCTTAAAGAGATCTGAAGTTCCCAAGGTATTGAAACTAAAGAGTTAGAAGGGTGACATGCCTATAGAAGTTCGATCTTGACTTGTGACTCGACCTGTAGAGCAGATACAACTTTTGAAGTTTGTCCCCTGAAGCAAATATACACTTCCTTTTCCTTTTTGTTTCCCTGAATTTCTGTCATTATGTTGCATTCTTTTAGGTCTTACTTAGTCATGGTCATAGTCAAACTAAAATTAACTACTTCCTCTTATTCTATGATTCCAGAGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGTGTAAGCTCCCCAGCTCCTTTGACTATTTATCAAATTCTTGAAGGGACCATTTTATGTGTGGCATCCATCTGTGGATTATGATGAATGCAATTATGTCTCGTCTGTCCTTACTGATTATATGTGCATGTCATTCTCCTTTTATTTTATTTTATTTTCTGCAAGTATGGTAATCTAAGCGAAATTGTCCATCTTCAGGCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAGGTGTGTTTTCATAATTGAAATTAGAACACTAAATTTTGTTTCAGAGTTATTGTTTTGATTATCAGGTTGGAAATAAGCACCTCATTTTCTCACCTTTTCCTCCTCCTACCTGTTTGACCATAAAAGCTTTGTGTGGGAGTAGGACTGGGATTCAAATTCAATCTCCACAAGGTGGGGGATATACATTTCTAGCATTCACAAGAGATTTTAGGTAGATGGATTTATGGTTAATTAAAACCATGGATTAAACTTTTCCCATTTAAAAAGCGTAAAATAATTTTGCATAATAGCTGGGATGGAGTTGCTTGCTTGTAGGAAGCAGGAAGATGATATGTCTGATGAAATTTTTGAAGTTAATCTTAATTTTCCACGGTCTAACGAGTTCTCTGTCTTGTCCCGGATACACTCTAGACGTGAATAGCACTCAATATCACTATCTAGGCGAACCAAATCCCGATATCTTAAGCATTAATTTGCCACATTTAATAAATCTATTAAGTACCCTAACAATATGATAATTAATTACAAAATAATAAGTATCTTCAAATATTAATTTAAGCTCTTGGCAAAACCCCACAGTAGACCGCATATCAGTGTTCAGGAAAGTGAGTGCAGCAATGAAGCAAAGCGATTCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTCAGCGCTTCATCGCTTAAAGCAAGCTCTTCATTGCTTAAAGCGTGAAGCGGGGCGTTATCGCTTTTTTCCGCTTCACGCTTCCCTGAACACTGCCGCATATATTTTAAACCATGTCTATATTTCAATGGATTAAAATGAATCTGTCTGTGAATATAAAGGACAATATTAGTTAAAACCTCATGGTACAAACGGCAGAAGTTTTACTTAAGCAGATGATCTGACCATAAAGTTCGAATAGAGAATACAAAGGACCTTGACATGATCTGCATTAGATTGTTATTTTGCTTTAAATACTGGCAAGAAGGCCTTTTATATGCTGCTGATATCACCATCACATAGAGCTATACTTTTCAGTTGCTTCTCGTCATGTTACGTCTCTTTTTCTTGGGGTGGTCAGTGGAATGAAATGTGCATTTTTACCTAAGCTTTGCAATTTTTGTTTGTCCCCTTGAATATATTTCAGATTTCAGACATTAATTATCAATTTGTTTGAGAACATATGCTCTGATGATTTGGTGTTTCTAGTGGTTGAGTTCTTCTGAACAATTCTATTTTTCCTTTTTAATAGCTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAAT-GGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGA</genome_strand>
        <mrna_strand>CGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAG.............................................................................GTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGTGTTATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCCTCAATGAATCTTCCAGATGGTATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGT...................................................................................................................................................................................................GCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACGTTGATGTAAAAGATGCCATGGGTGGAGGATCAAGTAAATAAGTCTGATCCACAGAACAGCCACTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAAGAAGACAATATATATGCAGGATAGCAAATGCCATCACGGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCGTAATGGAGACAGTTACCCTGAGCTTATCTTTGAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313719" ref_strand="-" ref_description="SGN-E313719 [cTOA-17-A16]">
      <seq>tatatatgcaggatagcaaatgccatcnctgtattctcagctttaggcttcatggttaatttggactccataatggagacagttaccttgagcttatctttaaaccttggtgtacatgagatgcttgaagcagaattccatgttcgagttgctgagcaagaagctgaacgacggagcacatcaaaaaggaggagatagtttacaactcatcatctacatttgcctttcttggattgtcgattatgcaaaagatagaagagattaggaatctattaagctgaatcgggtagcggtatgtcaccctttaattgaaaaagatctgtaaaagagtttccttctgaatatccccttaaattcacacttttgatttatgtgcattagtaaggagtgtgcagctgaagatcaaagtttttcttcccagcaatgaaaatttttcttatgttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="26009" stop="27055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26309" g_stop="26755" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="480"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-E313719" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313719" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26309" e_stop="26755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</genome_strand>
        <mrna_strand>TATATATGCAGGATAGCAAATGCCATCNCTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGGTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739389" ref_strand="+" ref_description="SGN-E739389 [LC17BA06]">
      <seq>ctttggtcagtcatgttatatgaaaagcaatccactattctttagtttcgttagcgtgatagtgaaaaatttattttcaggtgcttttatggatgccattagtggaatggaatttgactttgttgcttcgggacattatgcaaagattgtccatgcatctactgagcagctggacgaaccttctgtcttggaattgtcaaaagatatggtgtgtttttatattcgtacatgtttcttagagcctcttaccctattttcttttgtaaaagtttgatatgttcacttgagaaggggatatcttgaagatgagagtggtgtggaagagtcttgcttcactgtaggtaaaatgaagaacatatgggaaatgacttacagatatacatggttgggaattaaacattatagtcccatcaaaagaagttcttttgtaagagacagacatttagcagttgaggatacaaagtttgatttaacaccttcccaacccacctagcccccgttgcttttaaccaagatatcttctttgaacttatgatcaacgtctttcacgactgtctgtataattctttcaggtaaatttggtatatgtttcttgagatatattacatttggttcttatcttgaaaaatatagtaaatgtgatgaagcgtcttaagatatatctcataatgaaattgtaatgtagatctcgaaattatgattaaaaacagataaataaaacaaccaaagcaaatatattattctgttgaaggttcatatgtagtatcaatactgctccaagaatgatggttaactaggagttcatcatcttttgatacagaagaaatagtttaatttgccacacttcaattcctgatttactgagagttttacatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="32540" stop="31063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32241" g_stop="31363" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="879" r_length="879" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-E739389" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32241" e_stop="31363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</genome_strand>
        <mrna_strand>CTTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>55</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2230" PGL_stop="6800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2230" e_stop="2866"/>
            <exon e_start="6728" e_stop="6800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="0.924"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="2230" e_stop="2866" e_length="637"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="2867" i_stop="6727" i_length="3861"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="6728" e_stop="6800" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2230" stop="2788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2246" stop="2866"/>
              <exon start="6728" stop="6800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATACATTACTGTTGCAACAATTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATGCAGGCGGTGAGGTGGTGGATGTAGATTCAGTTAGAGAGGATTCAAATGGATCGCCGGAAAGTGAGATCACGGATACAG : GATCTCAAGAAGTACAGCATTTCGTGGATTCTGATGAATTTTGCACAAACCATGAAAACTGCGAGGCGAGGCA</gDNA_template>
            <first_frame> K  Y  I  T  V  A  T  I  *  T  I  Q  T  Q  Q  I  F  S  C  L  P  K  N  T  G  N  F  H  S  P  H  K  I  Q  L  K  M  P  P  A  A  G  V  V  A  N  S  D  R  V  S  F  G  N  S  M  V  I  P  T  P  G  A  P  V  I  Q  P  A  P  M  T  S  D  T  Y  A  K  D  A  I  I  A  W  F  R  G  E  F  A  A  A  N  A  I  I  D  A  L  C  N  H  I  T  Q  L  E  G  D  R  S  E  Y  E  P  V  F  S  A  I  H  R  R  R  L  N  W  I  P  I  L  Q  M  Q  K  Y  Y  S  I  A  D  V  T  L  E  L  R  K  L  A  A  R  K  V  S  D  R  V  E  V  A  D  V  K  Q  S  E  V  V  K  E  S  F  N  E  K  I  N  C  H  D  E  D  T  E  N  A  G  G  E  V  V  D  V  D  S  V  R  E  D  S  N  G  S  P  E  S  E  I  T  D  T   : G  S  Q  E  V  Q  H  F  V  D  S  D  E  F  C  T  N  H  E  N  C  E  A  R   </first_frame>
            <second_frame>  N  T  L  L  L  Q  Q  F  R  L  F  K  H  N  K  F  S  A  A  S  P  K  I  L  E  T  F  T  P  R  I  K  F  N  S  R  C  R  R  Q  P  A  L  L  R  I  P  I  E  F  H  L  V  I  L  W  L  S  L  L  P  V  L  R  *  S  N  Q  L  Q  *  R  Q  T  H  T  L  R  M  Q  L  *  R  G  S  E  V  N  S  P  L  Q  M  R  L  L  M  R  F  V  I  I  S  L  S  W  K  A  T  D  R  S  T  N  R  F  S  P  Q  Y  I  D  G  D  *  I  G  S  R  F  F  R  C  R  S  I  T  R  L  L  M  L  R  L  N  S  V  N  S  L  L  G  K  *  V  I  E  S  R  S  P  T  *  N  R  V  K  *  *  R  N  R  L  M  R  R  S  I  V  T  M  K  T  R  K  M  Q  A  V  R  W  W  M  *  I  Q  L  E  R  I  Q  M  D  R  R  K  V  R  S  R  I  Q  :  D  L  K  K  Y  S  I  S  W  I  L  M  N  F  A  Q  T  M  K  T  A  R  R  G  </second_frame>
            <third_frame>   I  H  Y  C  C  N  N  L  D  Y  S  N  T  T  N  F  Q  L  P  P  Q  K  Y  W  K  L  S  L  P  A  *  N  S  T  Q  D  A  A  G  S  R  R  C  C  E  F  R  S  S  F  I  W  *  F  Y  G  Y  P  Y  S  R  C  S  G  N  P  T  S  S  N  D  V  R  H  I  R  *  G  C  N  Y  S  V  V  Q  R  *  I  R  R  C  K  C  D  Y  *  C  A  L  *  S  Y  H  S  A  G  R  R  P  I  G  V  R  T  G  F  L  R  N  T  S  T  E  I  E  L  D  P  D  S  S  D  A  E  V  L  L  D  C  *  C  Y  A  *  T  P  *  T  R  C  *  E  S  E  *  *  S  R  G  R  R  R  E  T  E  *  S  S  E  G  I  V  *  *  E  D  Q  L  S  R  *  R  H  G  K  C  R  R  *  G  G  G  C  R  F  S  *  R  G  F  K  W  I  A  G  K  *  D  H  G  Y  R :   I  S  R  S  T  A  F  R  G  F  *  *  I  L  H  K  P  *  K  L  R  G  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2257" stop="2866"/>
                    <exon start="6728" stop="6798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIQTQQIFSCLPKNTGNFHSPHKIQLKMPPAAGVVANSDRVSFGNSMVIPTPGAPVIQPAPMTSDTYAKDAIIAWFRGEFAAANAIIDALCNHITQLEGDRSEYEPVFSAIHRRRLNWIPILQMQKYYSIADVTLELRKLAARKVSDRVEVADVKQSEVVKESFNEKINCHDEDTENAGGEVVDVDSVREDSNGSPESEITDTGSQEVQHFVDSDEFCTNHENCEAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6812" PGL_stop="9083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6839" e_stop="6858"/>
            <exon e_start="6951" e_stop="7577"/>
            <exon e_start="7731" e_stop="7846"/>
            <exon e_start="7938" e_stop="8092"/>
            <exon e_start="8329" e_stop="9083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.986" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6839" e_stop="6858" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6951" e_stop="7577" e_length="627"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7578" i_stop="7730" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="7731" e_stop="7846" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.986">
            <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7938" e_stop="8092" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8329" e_stop="9083" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6839" stop="6858"/>
              <exon start="6951" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7478" stop="7577"/>
              <exon start="7731" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7803" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7819" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8570" stop="9032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8577" stop="9083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8930" stop="9083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCAGTCAAAGGACATATG : GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGA : GTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAG : GGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGG : GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGGGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</gDNA_template>
            <first_frame> N  Q  S  K  D  I  W :   *  M  L  *  E  V  S  S  Y  S  K  T  F  L  L  Q  M  K  S  L  D  *  M  T  L  *  M  N  F  E  L  L  V  K  M  V  N  S  Q  V  D  P  V  I  R  D  A  F  I  V  I  V  V  S  F  L  G  R  S  Y  E  I  V  K  G  H  L  L  *  V  C  W  S  R  F  E  H  L  F  I  L  Y  D  *  L  Q  L  P  *  N  H  C  L  *  L  G  A  *  G  *  Y  L  T  L  F  S  L  K  L  L  F  C  L  *  S  D  E  S  N  K  H  Q  K  T  S  T  K  I  K  L  S  S  T  F  L  V  A  L  S  S  F  A  I  P  A  M  P  I  L  M  N  Y  L  L  L  Q  Y  V  I  L  D  K  F  L  I  D  L  *  L  C  F  R  *  N  F  Y  S  V  Q  P  A  G  E  G  Q  Q  K  R  A  N  S  A  W  C  T  N  F  *  A  C  K  R  G  R  H  M  S  K  E :   S  Q  *  A  H  S  S  P  S  A  R  C  H  K  P  P  D  S  V  A  S  N  I  R  E  *  K  A  *  Q  L  H  H  Q  L  F  *  *   : G  G  V  F  T  A  F  P  E  T  T  S  L  G  T  A  S  V  H  P  C  P  S  *  L  N  D  G  I  W  A  N  T  C  M  R  Q  *  R  E  L  Q  R  L  S  H  A  F  S  K  R  R  :  V  S  F  G  H  E  G  K  Q  C  *  Y  G  Q  T  C  Y  V  L  I  S  *  Q  E  S  Y  D  Y  I  L  Q  S  Q  N  R  D  G  N  Q  L  F  R  S  C  S  S  D  *  S  H  D  H  M  A  T  W  C  S  N  T  I  C  N  C  K  *  S  T  Q  W  L  *  A  N  G  Y  G  P  Q  M  G  R  C  C  S  I  S  N  G  Y  A  G  T  T  A  S  S  S  Y  E  S  P  E  G  S  S  W  W  Y  W  C  I  S  S  M  E  W  W  I  Q  K  T  C  K  A  S  S  T  A  C  S  K  R  T  V  P  C  T  T  S  P  W  *  L  A  *  I  R  D  R  F  R  T  K  F  G  S  *  W  Q  I  T  I  D  S  L  V  *  S  L  *  I  P  F  V  A  E  G  A  F  S  Y  C  V  Q  *  V  S  M  N  S  L  S  F  F  L  W  V  F  K  G  F  P  S  L  F  I  Y  V  E  T  R  R  W  L  L  Y  L  F  T  Y  V  I  G  F  R  D  N  *  A  *  V  N  G  V  Y  I  S  Q  T  T  G  *  I  L  Y  *  S  F  R  F   </first_frame>
            <second_frame>  T  S  Q  R  T  Y   : G  E  C  C  E  R  S  Q  V  I  R  R  R  F  Y  S  K  *  N  L  *  I  R  *  P  C  E  *  T  S  S  C  W  S  K  W  *  T  L  R  W  I  L  *  F  V  T  L  L  *  L  L  L  F  P  F  W  G  E  V  M  R  *  *  K  D  T  F  C  R  F  A  G  A  G  L  S  I  C  L  F  F  M  T  N  C  S  C  L  K  I  I  V  C  D  L  V  L  E  V  D  T  *  L  C  F  H  L  N  F  S  F  A  Y  N  L  M  N  Q  T  S  T  K  K  H  Q  L  K  L  N  F  L  L  L  F  W  *  P  C  Q  V  L  R  Y  Q  Q  C  Q  F  *  *  T  I  Y  F  S  N  M  *  S  W  I  S  S  *  L  I  C  D  S  V  S  G  E  T  F  I  L  Y  N  Q  Q  V  K  G  S  K  R  E  L  I  Q  L  G  A  P  I  F  E  H  V  K  E  D  A  T  C  Q  K   : S  H  N  E  P  I  P  A  L  L  Q  G  V  I  N  H  L  I  Q  W  H  L  I  S  E  S  R  R  P  N  S  C  I  I  N  F  F  D  E  :  G  E  F  S  Q  P  F  L  K  P  P  H  L  E  Q  P  V  S  T  L  V  L  A  D  S  M  M  A  F  G  R  T  L  V  C  D  S  E  G  N  Y  K  G  S  L  M  L  S  L  K  E  G :   S  L  L  V  M  R  G  N  S  A  D  M  A  R  H  A  M  C  S  S  P  N  K  R  V  T  I  T  F  F  K  V  R  T  E  M  G  T  N  F  S  E  A  A  P  L  T  R  A  M  T  I  W  Q  P  G  V  P  T  Q  Y  A  T  A  N  R  A  H  N  G  Y  E  P  M  D  M  V  P  K  W  G  G  V  V  R  S  P  M  V  M  L  A  P  L  R  P  V  V  M  N  P  R  R  A  P  R  G  G  T  G  V  F  L  P  W  N  G  G  S  R  K  P  A  K  H  L  P  P  R  A  Q  R  G  R  F  L  A  L  P  P  P  G  D  S  P  K  S  E  T  A  S  E  P  S  L  D  L  D  G  K  S  P  *  I  L  *  F  E  V  F  K  Y  P  L  *  L  K  G  L  S  P  T  V  Y  N  E  *  A  *  I  R  F  L  F  S  Y  G  F  S  K  V  F  L  L  F  L  F  T  *  R  L  G  V  G  Y  Y  T  C  S  P  M  *  *  A  L  E  I  T  E  L  R  *  M  E  C  I  L  A  K  Q  Q  A  E  F  C  I  K  V  F  V  F  </second_frame>
            <third_frame>   P  V  K  G  H  M  :  V  N  V  V  R  G  L  K  L  F  E  D  V  F  T  P  N  E  I  S  R  L  D  D  L  V  N  E  L  R  V  A  G  Q  N  G  E  L  S  G  G  S  C  D  S  *  R  F  Y  S  Y  C  C  F  L  F  G  A  K  L  *  D  S  K  R  T  P  S  V  G  L  L  E  Q  V  *  A  F  V  Y  S  L  *  L  I  A  A  A  L  K  S  L  F  V  T  W  C  L  R  L  I  P  N  F  V  F  T  *  T  S  L  L  L  I  I  *  *  I  K  Q  A  P  K  N  I  N  *  N  *  T  F  F  Y  F  F  G  S  L  V  K  F  C  D  T  S  N  A  N  S  D  E  L  F  T  S  P  I  C  D  L  G  *  V  P  D  *  S  V  T  L  F  Q  V  K  L  L  F  C  T  T  S  R  *  R  A  A  K  E  S  *  F  S  L  V  H  Q  F  L  S  M  *  K  R  T  P  H  V  K  R  :  V  T  M  S  P  F  Q  P  F  C  K  V  S  *  T  T  *  F  S  G  I  *  Y  Q  R  V  E  G  L  T  A  A  S  S  T  F  L  M  R :   G  S  F  H  S  L  S  *  N  H  L  T  W  N  S  Q  C  P  P  L  S  *  L  T  Q  *  W  H  L  G  E  H  L  Y  A  T  V  K  G  T  T  K  A  L  S  C  F  L  *  K  K   : G  L  F  W  S  *  G  E  T  V  L  I  W  P  D  M  L  C  A  H  L  L  T  R  E  L  R  L  H  S  S  K  S  E  Q  R  W  E  P  T  F  Q  K  L  L  L  *  L  E  P  *  P  Y  G  N  L  V  F  Q  H  N  M  Q  L  Q  I  E  H  T  M  V  M  S  Q  W  I  W  S  P  N  G  E  V  L  F  D  L  Q  W  L  C  W  H  H  C  V  Q  *  L  *  I  P  G  G  L  L  V  V  V  L  V  Y  F  F  H  G  M  V  D  P  E  N  L  Q  S  I  F  H  R  V  L  K  E  D  G  S  L  H  Y  L  P  L  V  T  R  L  N  Q  R  P  L  Q  N  Q  V  W  I  L  M  A  N  H  H  R  F  S  S  L  K  S  L  N  T  L  C  S  *  R  G  F  L  L  L  C  T  M  S  E  H  E  F  A  F  F  F  L  M  G  F  Q  R  F  S  F  S  F  Y  L  R  R  D  *  A  L  A  T  I  P  V  H  L  C  D  R  L  *  R  *  L  S  L  G  K  W  S  V  Y  *  P  N  N  R  L  N  F  V  L  K  F  S  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7445" stop="7577"/>
                    <exon start="7731" stop="7846"/>
                    <exon start="7938" stop="8092"/>
                    <exon start="8329" stop="8818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICDSVSGETFILYNQQVKGSKRELIQLGAPIFEHVKEDATCQKSHNEPIPALLQGVINHLIQWHLISESRRPNSCIINFFDEGEFSQPFLKPPHLEQPVSTLVLADSMMAFGRTLVCDSEGNYKGSLMLSLKEGSLLVMRGNSADMARHAMCSSPNKRVTITFFKVRTEMGTNFSEAAPLTRAMTIWQPGVPTQYATANRAHNGYEPMDMVPKWGGVVRSPMVMLAPLRPVVMNPRRAPRGGTGVFLPWNGGSRKPAKHLPPRAQRGRFLALPPPGDSPKSETASEPSLDLDGKSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6812" e_stop="6858"/>
            <exon e_start="6951" e_stop="7068"/>
            <exon e_start="7467" e_stop="7577"/>
            <exon e_start="7731" e_stop="7846"/>
            <exon e_start="7938" e_stop="8092"/>
            <exon e_start="8329" e_stop="9083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.686" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6812" e_stop="6858" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6951" e_stop="7068" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.686" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7069" i_stop="7466" i_length="398"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7467" e_stop="7577" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7578" i_stop="7730" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7731" e_stop="7846" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.986">
            <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7938" e_stop="8092" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8329" e_stop="9083" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6812" stop="6858"/>
              <exon start="6951" stop="7068"/>
              <exon start="7467" stop="7577"/>
              <exon start="7731" stop="7846"/>
              <exon start="7938" stop="8018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7478" stop="7577"/>
              <exon start="7731" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7803" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7819" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8570" stop="9032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8577" stop="9083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8930" stop="9083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGACAAAGGGTTTTGTATCAAAGGAACCAGTCAAAGGACATATG : GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAG : GTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGA : GTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAG : GGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGG : GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGGGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</gDNA_template>
            <first_frame> R  *  Q  R  V  L  Y  Q  R  N  Q  S  K  D  I  W :   *  M  L  *  E  V  S  S  Y  S  K  T  F  L  L  Q  M  K  S  L  D  *  M  T  L  *  M  N  F  E  L  L  V  K  M  V  N  S  Q  :  V  K  L  L  F  C  T  T  S  R  *  R  A  A  K  E  S  *  F  S  L  V  H  Q  F  L  S  M  *  K  R  T  P  H  V  K  R  :  V  T  M  S  P  F  Q  P  F  C  K  V  S  *  T  T  *  F  S  G  I  *  Y  Q  R  V  E  G  L  T  A  A  S  S  T  F  L  M  R :   G  S  F  H  S  L  S  *  N  H  L  T  W  N  S  Q  C  P  P  L  S  *  L  T  Q  *  W  H  L  G  E  H  L  Y  A  T  V  K  G  T  T  K  A  L  S  C  F  L  *  K  K   : G  L  F  W  S  *  G  E  T  V  L  I  W  P  D  M  L  C  A  H  L  L  T  R  E  L  R  L  H  S  S  K  S  E  Q  R  W  E  P  T  F  Q  K  L  L  L  *  L  E  P  *  P  Y  G  N  L  V  F  Q  H  N  M  Q  L  Q  I  E  H  T  M  V  M  S  Q  W  I  W  S  P  N  G  E  V  L  F  D  L  Q  W  L  C  W  H  H  C  V  Q  *  L  *  I  P  G  G  L  L  V  V  V  L  V  Y  F  F  H  G  M  V  D  P  E  N  L  Q  S  I  F  H  R  V  L  K  E  D  G  S  L  H  Y  L  P  L  V  T  R  L  N  Q  R  P  L  Q  N  Q  V  W  I  L  M  A  N  H  H  R  F  S  S  L  K  S  L  N  T  L  C  S  *  R  G  F  L  L  L  C  T  M  S  E  H  E  F  A  F  F  F  L  M  G  F  Q  R  F  S  F  S  F  Y  L  R  R  D  *  A  L  A  T  I  P  V  H  L  C  D  R  L  *  R  *  L  S  L  G  K  W  S  V  Y  *  P  N  N  R  L  N  F  V  L  K  F  S  F  L </first_frame>
            <second_frame>  D  D  K  G  F  C  I  K  G  T  S  Q  R  T  Y   : G  E  C  C  E  R  S  Q  V  I  R  R  R  F  Y  S  K  *  N  L  *  I  R  *  P  C  E  *  T  S  S  C  W  S  K  W  *  T  L  R :   *  N  F  Y  S  V  Q  P  A  G  E  G  Q  Q  K  R  A  N  S  A  W  C  T  N  F  *  A  C  K  R  G  R  H  M  S  K  E :   S  Q  *  A  H  S  S  P  S  A  R  C  H  K  P  P  D  S  V  A  S  N  I  R  E  *  K  A  *  Q  L  H  H  Q  L  F  *  *   : G  G  V  F  T  A  F  P  E  T  T  S  L  G  T  A  S  V  H  P  C  P  S  *  L  N  D  G  I  W  A  N  T  C  M  R  Q  *  R  E  L  Q  R  L  S  H  A  F  S  K  R  R  :  V  S  F  G  H  E  G  K  Q  C  *  Y  G  Q  T  C  Y  V  L  I  S  *  Q  E  S  Y  D  Y  I  L  Q  S  Q  N  R  D  G  N  Q  L  F  R  S  C  S  S  D  *  S  H  D  H  M  A  T  W  C  S  N  T  I  C  N  C  K  *  S  T  Q  W  L  *  A  N  G  Y  G  P  Q  M  G  R  C  C  S  I  S  N  G  Y  A  G  T  T  A  S  S  S  Y  E  S  P  E  G  S  S  W  W  Y  W  C  I  S  S  M  E  W  W  I  Q  K  T  C  K  A  S  S  T  A  C  S  K  R  T  V  P  C  T  T  S  P  W  *  L  A  *  I  R  D  R  F  R  T  K  F  G  S  *  W  Q  I  T  I  D  S  L  V  *  S  L  *  I  P  F  V  A  E  G  A  F  S  Y  C  V  Q  *  V  S  M  N  S  L  S  F  F  L  W  V  F  K  G  F  P  S  L  F  I  Y  V  E  T  R  R  W  L  L  Y  L  F  T  Y  V  I  G  F  R  D  N  *  A  *  V  N  G  V  Y  I  S  Q  T  T  G  *  I  L  Y  *  S  F  R  F   </second_frame>
            <third_frame>   M  T  K  G  F  V  S  K  E  P  V  K  G  H  M  :  V  N  V  V  R  G  L  K  L  F  E  D  V  F  T  P  N  E  I  S  R  L  D  D  L  V  N  E  L  R  V  A  G  Q  N  G  E  L  S   : G  E  T  F  I  L  Y  N  Q  Q  V  K  G  S  K  R  E  L  I  Q  L  G  A  P  I  F  E  H  V  K  E  D  A  T  C  Q  K   : S  H  N  E  P  I  P  A  L  L  Q  G  V  I  N  H  L  I  Q  W  H  L  I  S  E  S  R  R  P  N  S  C  I  I  N  F  F  D  E  :  G  E  F  S  Q  P  F  L  K  P  P  H  L  E  Q  P  V  S  T  L  V  L  A  D  S  M  M  A  F  G  R  T  L  V  C  D  S  E  G  N  Y  K  G  S  L  M  L  S  L  K  E  G :   S  L  L  V  M  R  G  N  S  A  D  M  A  R  H  A  M  C  S  S  P  N  K  R  V  T  I  T  F  F  K  V  R  T  E  M  G  T  N  F  S  E  A  A  P  L  T  R  A  M  T  I  W  Q  P  G  V  P  T  Q  Y  A  T  A  N  R  A  H  N  G  Y  E  P  M  D  M  V  P  K  W  G  G  V  V  R  S  P  M  V  M  L  A  P  L  R  P  V  V  M  N  P  R  R  A  P  R  G  G  T  G  V  F  L  P  W  N  G  G  S  R  K  P  A  K  H  L  P  P  R  A  Q  R  G  R  F  L  A  L  P  P  P  G  D  S  P  K  S  E  T  A  S  E  P  S  L  D  L  D  G  K  S  P  *  I  L  *  F  E  V  F  K  Y  P  L  *  L  K  G  L  S  P  T  V  Y  N  E  *  A  *  I  R  F  L  F  S  Y  G  F  S  K  V  F  L  L  F  L  F  T  *  R  L  G  V  G  Y  Y  T  C  S  P  M  *  *  A  L  E  I  T  E  L  R  *  M  E  C  I  L  A  K  Q  Q  A  E  F  C  I  K  V  F  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6814" stop="6858"/>
                    <exon start="6951" stop="7068"/>
                    <exon start="7467" stop="7577"/>
                    <exon start="7731" stop="7846"/>
                    <exon start="7938" stop="8092"/>
                    <exon start="8329" stop="8818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTKGFVSKEPVKGHMVNVVRGLKLFEDVFTPNEISRLDDLVNELRVAGQNGELSGETFILYNQQVKGSKRELIQLGAPIFEHVKEDATCQKSHNEPIPALLQGVINHLIQWHLISESRRPNSCIINFFDEGEFSQPFLKPPHLEQPVSTLVLADSMMAFGRTLVCDSEGNYKGSLMLSLKEGSLLVMRGNSADMARHAMCSSPNKRVTITFFKVRTEMGTNFSEAAPLTRAMTIWQPGVPTQYATANRAHNGYEPMDMVPKWGGVVRSPMVMLAPLRPVVMNPRRAPRGGTGVFLPWNGGSRKPAKHLPPRAQRGRFLALPPPGDSPKSETASEPSLDLDGKSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9088" PGL_stop="8418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9088" e_stop="8418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="9088" e_stop="8418" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9088" stop="8418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTGTAAAAACGAAAACTTTAATACAAAATTCAGCCTGTTGTTTGGCTAATATACACTCCATTTACCTAAGCTCAGTTATCTCTAAAGCCTATCACATAGGTGAACAGGTATAGTAGCCAACGCCTAGTCTCTACGTAAATAAAAAGAGAAGGAAAACCTTTGAAAACCCATAAGAAAAAAGAAAGCGAATTCATGCTCACTCATTGTACACAGTAGGAGAAAGCCCCTTCAGCTACAAAGGGTATTTAAAGACTTCAAACTAGAGAATCTATGGTGATTTGCCATCAAGATCCAAACTTGGTTCTGAAGCGGTCTCTGATTTAGGCGAGTCACCAGGGGGAGGTAGTGCAAGGAACCGTCCTCTTTGAGCACGCGGTGGAAGATGCTTTGCAGGTTTTCTGGATCCACCATTCCATGGAAGAAATACACCAGTACCACCACGAGGAGCCCTCCGGGGATTCATAACTACTGGACGCAGTGGTGCCAGCATAACCATTGGAGATCGAACAACACCTCCCCATTTGGGGACCATATCCATTGGCTCATAACCATTGTGTGCTCTATTTGCAGTTGCATATTGTGTTGGAACACCAGGTTGCCATATGGTCATGGCTCTAGTCAGAGGAGCAGCTTCTGAAAAGTTGGTTCCCATCTCTGTTCTGACTTTGA</gDNA_template>
            <first_frame> W  C  K  N  E  N  F  N  T  K  F  S  L  L  F  G  *  Y  T  L  H  L  P  K  L  S  Y  L  *  S  L  S  H  R  *  T  G  I  V  A  N  A  *  S  L  R  K  *  K  E  K  E  N  L  *  K  P  I  R  K  K  K  A  N  S  C  S  L  I  V  H  S  R  R  K  P  L  Q  L  Q  R  V  F  K  D  F  K  L  E  N  L  W  *  F  A  I  K  I  Q  T  W  F  *  S  G  L  *  F  R  R  V  T  R  G  R  *  C  K  E  P  S  S  L  S  T  R  W  K  M  L  C  R  F  S  G  S  T  I  P  W  K  K  Y  T  S  T  T  T  R  S  P  P  G  I  H  N  Y  W  T  Q  W  C  Q  H  N  H  W  R  S  N  N  T  S  P  F  G  D  H  I  H  W  L  I  T  I  V  C  S  I  C  S  C  I  L  C  W  N  T  R  L  P  Y  G  H  G  S  S  Q  R  S  S  F  *  K  V  G  S  H  L  C  S  D  F   </first_frame>
            <second_frame>  G  V  K  T  K  T  L  I  Q  N  S  A  C  C  L  A  N  I  H  S  I  Y  L  S  S  V  I  S  K  A  Y  H  I  G  E  Q  V  *  *  P  T  P  S  L  Y  V  N  K  K  R  R  K  T  F  E  N  P  *  E  K  R  K  R  I  H  A  H  S  L  Y  T  V  G  E  S  P  F  S  Y  K  G  Y  L  K  T  S  N  *  R  I  Y  G  D  L  P  S  R  S  K  L  G  S  E  A  V  S  D  L  G  E  S  P  G  G  G  S  A  R  N  R  P  L  *  A  R  G  G  R  C  F  A  G  F  L  D  P  P  F  H  G  R  N  T  P  V  P  P  R  G  A  L  R  G  F  I  T  T  G  R  S  G  A  S  I  T  I  G  D  R  T  T  P  P  H  L  G  T  I  S  I  G  S  *  P  L  C  A  L  F  A  V  A  Y  C  V  G  T  P  G  C  H  M  V  M  A  L  V  R  G  A  A  S  E  K  L  V  P  I  S  V  L  T  L  </second_frame>
            <third_frame>   V  *  K  R  K  L  *  Y  K  I  Q  P  V  V  W  L  I  Y  T  P  F  T  *  A  Q  L  S  L  K  P  I  T  *  V  N  R  Y  S  S  Q  R  L  V  S  T  *  I  K  R  E  G  K  P  L  K  T  H  K  K  K  E  S  E  F  M  L  T  H  C  T  Q  *  E  K  A  P  S  A  T  K  G  I  *  R  L  Q  T  R  E  S  M  V  I  C  H  Q  D  P  N  L  V  L  K  R  S  L  I  *  A  S  H  Q  G  E  V  V  Q  G  T  V  L  F  E  H  A  V  E  D  A  L  Q  V  F  W  I  H  H  S  M  E  E  I  H  Q  Y  H  H  E  E  P  S  G  D  S  *  L  L  D  A  V  V  P  A  *  P  L  E  I  E  Q  H  L  P  I  W  G  P  Y  P  L  A  H  N  H  C  V  L  Y  L  Q  L  H  I  V  L  E  H  Q  V  A  I  W  S  W  L  *  S  E  E  Q  L  L  K  S  W  F  P  S  L  F  *  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8740" stop="8450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKEPSSLSTRWKMLCRFSGSTIPWKKYTSTTTRSPPGIHNYWTQWCQHNHWRSNNTSPFGDHIHWLITIVCSICSCILCWNTRLPYGHGSSQRSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="10453" PGL_stop="11162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10453" e_stop="11162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="10453" e_stop="11162" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10453" stop="11162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10453" stop="11053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTCTATGAACATCATTGCTTTCATTCAAATTTCCCAAGTATACAAAGGGCACAAAACATGTTCACATTATAAATGAACAGCTAGACATGGAAATCGCGACTACTAAGCTAAAAGTAAAATGAAAAGAATGAAAATCATGAAGCACAATTAAACAAACTGCCTGAGACAATAAACGTTATCTTACTTTACTAGGTTTCAAGCTTTAAAGTTTAATTCTTGAGTTCTGTTGTACGTTGACAGCATTGACATCCAGCTTTCTGCATATTTTGAATGACGATCAAAAAGCTTTCACAGGGTTGTCATCATCTTCAATCCCAACTCAAATCCTCATCGTCCTCTTCAACACTAAGCCTCTTCCTCAAATCATCTCTATTGGTGCTTGCAACATGAGAAGTTGCCTTTTTGTCATCAATACCGTCAACGTCCTCAATCTCATCCCAATCCAAGTCGTCCTCATCGGCCCCAGTCGTCTTTTGACTTGAAGCAATAGGGACATCACCATCTTTGCCTGATCCATCCTTATCACTTTTCCCCTCTGAACCTTTTACTACCTCTTCCTCCTTTTTAACCAGAGGAGTAACTTCAGCGTCTTCTTTCTTACTATCTTTGTTACTCCCAACTGATTCTACGACCTTACTCTTGCCACCACCATCTACATTAGGCTGACTCTCTTCTTTCCTATCAACAGAAGCCGAACTTATAGTTT</gDNA_template>
            <first_frame> F  C  L  *  T  S  L  L  S  F  K  F  P  K  Y  T  K  G  T  K  H  V  H  I  I  N  E  Q  L  D  M  E  I  A  T  T  K  L  K  V  K  *  K  E  *  K  S  *  S  T  I  K  Q  T  A  *  D  N  K  R  Y  L  T  L  L  G  F  K  L  *  S  L  I  L  E  F  C  C  T  L  T  A  L  T  S  S  F  L  H  I  L  N  D  D  Q  K  A  F  T  G  L  S  S  S  S  I  P  T  Q  I  L  I  V  L  F  N  T  K  P  L  P  Q  I  I  S  I  G  A  C  N  M  R  S  C  L  F  V  I  N  T  V  N  V  L  N  L  I  P  I  Q  V  V  L  I  G  P  S  R  L  L  T  *  S  N  R  D  I  T  I  F  A  *  S  I  L  I  T  F  P  L  *  T  F  Y  Y  L  F  L  L  F  N  Q  R  S  N  F  S  V  F  F  L  T  I  F  V  T  P  N  *  F  Y  D  L  T  L  A  T  T  I  Y  I  R  L  T  L  F  F  P  I  N  R  S  R  T  Y  S   </first_frame>
            <second_frame>  F  V  Y  E  H  H  C  F  H  S  N  F  P  S  I  Q  R  A  Q  N  M  F  T  L  *  M  N  S  *  T  W  K  S  R  L  L  S  *  K  *  N  E  K  N  E  N  H  E  A  Q  L  N  K  L  P  E  T  I  N  V  I  L  L  Y  *  V  S  S  F  K  V  *  F  L  S  S  V  V  R  *  Q  H  *  H  P  A  F  C  I  F  *  M  T  I  K  K  L  S  Q  G  C  H  H  L  Q  S  Q  L  K  S  S  S  S  S  S  T  L  S  L  F  L  K  S  S  L  L  V  L  A  T  *  E  V  A  F  L  S  S  I  P  S  T  S  S  I  S  S  Q  S  K  S  S  S  S  A  P  V  V  F  *  L  E  A  I  G  T  S  P  S  L  P  D  P  S  L  S  L  F  P  S  E  P  F  T  T  S  S  S  F  L  T  R  G  V  T  S  A  S  S  F  L  L  S  L  L  L  P  T  D  S  T  T  L  L  L  P  P  P  S  T  L  G  *  L  S  S  F  L  S  T  E  A  E  L  I  V  </second_frame>
            <third_frame>   L  S  M  N  I  I  A  F  I  Q  I  S  Q  V  Y  K  G  H  K  T  C  S  H  Y  K  *  T  A  R  H  G  N  R  D  Y  *  A  K  S  K  M  K  R  M  K  I  M  K  H  N  *  T  N  C  L  R  Q  *  T  L  S  Y  F  T  R  F  Q  A  L  K  F  N  S  *  V  L  L  Y  V  D  S  I  D  I  Q  L  S  A  Y  F  E  *  R  S  K  S  F  H  R  V  V  I  I  F  N  P  N  S  N  P  H  R  P  L  Q  H  *  A  S  S  S  N  H  L  Y  W  C  L  Q  H  E  K  L  P  F  C  H  Q  Y  R  Q  R  P  Q  S  H  P  N  P  S  R  P  H  R  P  Q  S  S  F  D  L  K  Q  *  G  H  H  H  L  C  L  I  H  P  Y  H  F  S  P  L  N  L  L  L  P  L  P  P  F  *  P  E  E  *  L  Q  R  L  L  S  Y  Y  L  C  Y  S  Q  L  I  L  R  P  Y  S  C  H  H  H  L  H  *  A  D  S  L  L  S  Y  Q  Q  K  P  N  L  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10663" stop="10938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLILEFCCTLTALTSSFLHILNDDQKAFTGLSSSSIPTQILIVLFNTKPLPQIISIGACNMRSCLFVINTVNVLNLIPIQVVLIGPSRLLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="12404" PGL_stop="10454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12404" e_stop="10454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="12404" e_stop="10454" e_length="1951"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12404" stop="11751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12404" stop="11933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12361" stop="11482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12338" stop="12026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12317" stop="11513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12308" stop="11442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12305" stop="11826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12303" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12303" stop="11657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12303" stop="11704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12295" stop="11498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="11789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12071" stop="11480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12017" stop="11769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11767" stop="11379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11659" stop="10909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11636" stop="11091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11479" stop="10647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="10454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11064" stop="10454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11053" stop="10489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACATCCTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACAAA</gDNA_template>
            <first_frame> S  L  S  L  R  V  G  T  A  N  W  Q  Q  H  P  L  Q  R  *  H  F  D  R  T  L  K  S  I  L  D  S  T  A  P  W  I  S  S  N  P  S  Y  Q  M  I  P  N  R  T  L  H  Y  P  K  S  P  M  I  L  H  R  K  R  K  L  Y  R  I  R  I  L  K  N  P  I  H  D  L  I  Q  T  P  P  T  A  L  M  V  L  M  L  V  F  G  V  S  E  V  C  *  R  H  Y  Q  P  D  P  N  Q  C  S  R  H  T  V  G  I  Y  R  N  S  D  P  G  *  R  K  K  P  N  C  S  V  K  *  L  V  E  L  L  R  I  F  L  T  R  S  R  S  E  L  P  S  A  T  P  L  T  V  L  S  N  R  Q  L  R  L  Y  H  K  V  K  I  L  F  S  L  P  L  M  L  N  P  K  P  Q  M  R  I  R  P  *  I  R  V  G  T  V  G  L  N  L  N  *  *  I  S  R  V  T  R  I  R  S  V  W  I  L  R  I  W  R  S  T  R  S  G  N  L  S  L  I  *  R  K  I  V  R  K  L  R  F  *  L  K  K  M  D  L  W  K  V  Y  S  K  G  L  C  L  M  K  L  I  M  R  L  F  G  V  D  I  F  I  K  C  I  S  L  S  N  K  R  V  *  E  L  I  L  *  R  E  Q  Y  L  *  M  M  K  K  N  C  L  G  M  S  M  M  M  T  T  I  M  N  K  R  T  L  P  N  R  N  S  M  R  R  E  K  R  V  L  L  L  K  A  L  S  M  M  *  R  K  N  L  P  L  K  I  Q  Q  T  L  Q  R  K  C  L  L  I  R  V  S  Q  A  S  R  I  R  P  T  L  Q  R  K  C  L  L  I  K  V  N  Q  S  R  R  I  Q  P  T  L  R  R  K  C  L  L  I  K  V  N  Q  T  S  R  I  R  P  T  L  *  N  R  T  N  H  K  L  *  V  R  L  L  L  I  G  K  K  R  V  S  L  M  *  M  V  V  A  R  V  R  S  *  N  Q  L  G  V  T  K  I  V  R  K  K  T  L  K  L  L  L  W  L  K  R  R  K  R  *  *  K  V  Q  R  G  K  V  I  R  M  D  Q  A  K  M  V  M  S  L  L  L  Q  V  K  R  R  L  G  P  M  R  T  T  W  I  G  M  R  L  R  T  L  T  V  L  M  T  K  R  Q  L  L  M  L  Q  A  P  I  E  M  I  *  G  R  G  L  V  L  K  R  T  M  R  I  *  V  G  I  E  D  D  D  N  P  V  K  A  F  *  S  S  F  K  I  C  R  K  L  D  V  N  A  V  N  V  Q  Q  N  S  R  I  K  L  *  S  L  K  P  S  K  V  R  *  R  L  L  S  Q  A  V  C  L  I  V  L  H  D  F  H  S  F  H  F  T  F  S  L  V  V  A  I  S  M  S  S  C  S  F  I  M  *  T  C  F  V  P  F  V  Y  L  G  N  L  N  E  S  N  D  V  H  R  Q  </first_frame>
            <second_frame>  V  F  L  *  E  W  E  L  P  T  G  N  N  I  L  F  K  G  D  T  L  T  E  H  S  N  Q  F  L  I  P  L  R  H  G  F  L  Q  I  H  L  I  R  *  S  R  T  G  P  S  T  T  Q  K  A  P  *  F  F  T  G  K  G  N  C  T  G  S  E  S  *  K  T  Q  F  T  I  *  F  K  R  R  R  R  R  *  W  S  *  C  W  C  L  E  F  R  R  F  V  E  D  I  I  N  P  I  R  I  S  A  R  D  I  P  S  G  S  T  G  I  R  I  R  V  E  E  R  N  R  I  V  P  *  S  S  *  S  S  C  *  G  S  S  *  L  D  R  G  R  N  Y  R  Q  P  R  H  *  R  C  Y  Q  I  D  N  *  D  Y  I  T  R  *  R  Y  S  S  R  F  L  *  C  *  I  R  N  P  R  C  E  S  D  L  E  F  G  S  V  Q  S  V  *  I  S  I  D  E  Y  P  E  *  P  E  Y  V  L  C  G  S  *  G  F  G  G  V  Q  E  V  E  I  *  V  *  F  E  G  K  *  *  G  S  *  D  F  D  *  R  K  W  I  F  G  R  Y  I  Q  K  G  C  A  *  *  S  *  *  *  D  F  L  V  S  I  F  L  *  S  V  *  A  *  A  T  R  E  C  K  S  *  S  C  E  E  S  N  I  Y  R  *  *  R  R  I  V  L  G  C  R  *  *  *  R  Q  *  *  T  R  E  H  C  Q  I  E  I  R  *  E  G  K  R  G  F  C  C  *  K  L  C  Q  *  C  K  E  R  I  C  H  S  R  F  N  K  R  C  K  G  S  A  C  *  *  E  *  A  K  Q  A  G  F  D  Q  H  C  K  G  S  A  Y  *  *  K  *  T  N  H  A  G  F  N  Q  R  C  E  G  S  A  Y  *  *  K  *  T  K  Q  A  G  F  D  Q  R  C  K  T  G  R  I  T  N  Y  K  F  G  F  C  *  *  E  R  R  E  S  A  *  C  R  W  W  W  Q  E  *  G  R  R  I  S  W  E  *  Q  R  *  *  E  R  R  R  *  S  Y  S  S  G  *  K  G  G  R  G  S  K  R  F  R  G  E  K  *  *  G  W  I  R  Q  R  W  *  C  P  Y  C  F  K  S  K  D  D  W  G  R  *  G  R  L  G  L  G  *  D  *  G  R  *  R  Y  *  *  Q  K  G  N  F  S  C  C  K  H  Q  *  R  *  F  E  E  E  A  *  C  *  R  G  R  *  G  F  E  L  G  L  K  M  M  T  T  L  *  K  L  F  D  R  H  S  K  Y  A  E  S  W  M  S  M  L  S  T  Y  N  R  T  Q  E  L  N  F  K  A  *  N  L  V  K  *  D  N  V  Y  C  L  R  Q  F  V  *  L  C  F  M  I  F  I  L  F  I  L  L  L  A  *  *  S  R  F  P  C  L  A  V  H  L  *  C  E  H  V  L  C  P  L  Y  T  W  E  I  *  M  K  A  M  M  F  I  D  K </second_frame>
            <third_frame>   S  F  S  E  S  G  N  C  Q  L  A  T  T  S  S  S  K  V  T  L  *  Q  N  T  Q  I  N  S  *  F  H  C  A  M  D  F  F  K  S  I  L  S  D  D  P  E  P  D  P  P  L  P  K  K  P  H  D  S  S  P  E  K  E  I  V  P  D  Q  N  L  E  K  P  N  S  R  S  D  S  N  A  A  D  G  A  D  G  P  D  A  G  V  W  S  F  G  G  L  L  K  T  L  S  T  R  S  E  S  V  L  E  T  Y  R  R  D  L  Q  E  F  G  S  G  L  K  K  E  T  E  L  F  R  E  V  A  S  R  A  V  K  D  L  P  N  S  I  E  V  G  T  T  V  S  H  A  I  D  G  V  I  K  S  T  T  E  I  I  S  Q  G  K  D  T  L  L  A  S  S  D  A  E  S  E  T  P  D  A  N  Q  T  L  N  S  G  R  Y  S  R  F  E  S  Q  L  M  N  I  Q  S  D  P  N  T  F  C  V  D  P  E  D  L  E  E  Y  K  K  W  K  S  E  F  D  L  K  E  N  S  K  E  V  E  I  L  I  E  E  N  G  S  L  E  G  I  F  K  R  V  V  P  N  E  V  D  N  E  T  F  W  C  R  Y  F  Y  K  V  Y  K  L  K  Q  Q  E  S  V  R  A  N  L  V  K  R  A  I  S  I  D  D  E  E  E  L  S  W  D  V  D  D  D  D  D  N  N  E  Q  E  N  I  A  K  S  K  F  D  E  K  G  K  E  G  S  V  V  E  S  S  V  N  D  V  K  K  E  S  A  T  Q  D  S  T  N  V  A  K  E  V  P  A  N  K  S  E  P  S  K  Q  D  S  T  N  I  A  K  E  V  P  T  N  K  S  E  P  I  T  Q  D  S  T  N  V  A  K  E  V  P  T  N  K  S  E  P  N  K  Q  D  S  T  N  A  V  K  Q  D  E  S  Q  T  I  S  S  A  S  V  D  R  K  E  E  S  Q  P  N  V  D  G  G  G  K  S  K  V  V  E  S  V  G  S  N  K  D  S  K  K  E  D  A  E  V  T  P  L  V  K  K  E  E  E  V  V  K  G  S  E  G  K  S  D  K  D  G  S  G  K  D  G  D  V  P  I  A  S  S  Q  K  T  T  G  A  D  E  D  D  L  D  W  D  E  I  E  D  V  D  G  I  D  D  K  K  A  T  S  H  V  A  S  T  N  R  D  D  L  R  K  R  L  S  V  E  E  D  D  E  D  L  S  W  D  *  R  *  *  Q  P  C  E  S  F  L  I  V  I  Q  N  M  Q  K  A  G  C  Q  C  C  Q  R  T  T  E  L  K  N  *  T  L  K  L  E  T  *  *  S  K  I  T  F  I  V  S  G  S  L  F  N  C  A  S  *  F  S  F  F  S  F  Y  F  *  L  S  S  R  D  F  H  V  *  L  F  I  Y  N  V  N  M  F  C  A  L  C  I  L  G  K  F  E  *  K  Q  *  C  S  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12315" stop="10765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1548</number_coding_nucleotides>
                  <number_encoded_amino_acids>516</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHCAMDFFKSILSDDPEPDPPLPKKPHDSSPEKEIVPDQNLEKPNSRSDSNAADGADGPDAGVWSFGGLLKTLSTRSESVLETYRRDLQEFGSGLKKETELFREVASRAVKDLPNSIEVGTTVSHAIDGVIKSTTEIISQGKDTLLASSDAESETPDANQTLNSGRYSRFESQLMNIQSDPNTFCVDPEDLEEYKKWKSEFDLKENSKEVEILIEENGSLEGIFKRVVPNEVDNETFWCRYFYKVYKLKQQESVRANLVKRAISIDDEEELSWDVDDDDDNNEQENIAKSKFDEKGKEGSVVESSVNDVKKESATQDSTNVAKEVPANKSEPSKQDSTNIAKEVPTNKSEPITQDSTNVAKEVPTNKSEPNKQDSTNAVKQDESQTISSASVDRKEESQPNVDGGGKSKVVESVGSNKDSKKEDAEVTPLVKKEEEVVKGSEGKSDKDGSGKDGDVPIASSQKTTGADEDDLDWDEIEDVDGIDDKKATSHVASTNRDDLRKRLSVEEDDEDLSWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="16898" PGL_stop="16132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16898" e_stop="16132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="16898" e_stop="16132" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16898" stop="16554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16854" stop="16132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16854" stop="16184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16853" stop="16392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16845" stop="16392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16843" stop="16433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16841" stop="16301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16838" stop="16337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16834" stop="16455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16833" stop="16358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACATTAATATTATTACTATATCAAATGCAAAGAGCTGGATGGCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGAATTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATTTGAAGGGCGAAAACCGTGTTATTTCAACACGGGGGTGTTGGTAATGGATGTT</gDNA_template>
            <first_frame> L  T  L  I  L  L  L  Y  Q  M  Q  R  A  G  W  P  F  G  A  F  L  L  L  F  L  S  L  A  S  C  L  S  C  F  P  I  K  P  P  *  S  H  P  L  T  A  T  T  F  T  F  I  R  C  Q  M  G  G  L  G  Q  T  L  L  Y  S  V  R  P  L  H  F  A  M  G  T  L  V  V  I  M  I  E  C  M  W  L  *  H  L  M  L  I  I  *  E  V  L  W  L  Q  C  Y  R  Y  Y  N  I  Q  R  A  L  K  T  L  P  F  I  S  Y  G  L  D  M  N  M  R  C  F  R  V  L  R  Q  R  F  L  T  L  I  S  R  C  I  D  L  M  Y  I  G  Y  V  A  *  Y  L  S  L  Y  V  K  L  *  I  N  R  *  I  M  P  G  F  I  W  L  I  *  Y  L  M  R  *  N  A  L  F  I  L  I  L  T  L  S  W  L  M  T  S  Q  S  Y  G  R  L  N  *  V  T  R  F  W  L  H  L  N  I  V  K  Q  I  S  P  F  I  L  L  K  R  F  G  L  I  L  I  C  Q  E  H  L  K  G  E  N  R  V  I  S  T  R  G  C  W  *  W  M   </first_frame>
            <second_frame>  *  H  *  Y  Y  Y  Y  I  K  C  K  E  L  D  G  L  L  E  P  F  F  F  S  S  S  P  W  P  P  V  S  L  A  F  P  S  N  L  L  D  H  I  H  *  Q  R  Q  R  S  H  S  S  G  V  R  W  A  G  W  V  K  L  F  C  I  P  *  G  P  C  I  S  Q  W  G  H  L  W  *  *  *  *  N  A  C  G  Y  D  T  *  C  *  L  F  K  R  Y  Y  G  C  S  V  I  D  I  T  T  F  N  V  P  *  R  R  Y  L  S  F  P  M  G  *  T  *  T  *  G  V  F  E  Y  *  G  N  V  S  L  P  *  F  Q  G  V  S  I  *  C  T  *  G  T  W  P  N  I  *  V  Y  T  S  S  F  R  S  T  V  E  L  C  Q  D  L  F  G  *  F  N  T  *  *  G  E  T  R  Y  L  S  *  F  *  P  C  H  G  *  *  H  R  K  V  M  E  G  *  I  R  *  Q  G  F  G  C  T  *  I  L  S  S  K  F  H  R  L  F  Y  *  S  V  L  V  *  S  L  Y  A  K  N  I  *  R  A  K  T  V  L  F  Q  H  G  G  V  G  N  G  C  </second_frame>
            <third_frame>   D  I  N  I  I  T  I  S  N  A  K  S  W  M  A  F  W  S  L  S  S  S  L  P  L  L  G  L  L  S  L  L  L  S  H  Q  T  S  L  I  T  S  T  N  S  D  N  V  H  I  H  Q  V  S  D  G  R  V  G  S  N  S  S  V  F  R  E  A  P  A  F  R  N  G  D  T  C  G  N  N  D  R  M  H  V  A  M  T  L  D  A  N  Y  L  R  G  T  M  A  A  V  L  S  I  L  Q  H  S  T  C  P  E  D  V  T  F  H  F  L  W  V  R  H  E  H  E  V  F  S  S  I  K  A  T  F  P  Y  L  N  F  K  V  Y  R  F  D  V  H  R  V  R  G  L  I  S  K  S  I  R  Q  A  L  D  Q  P  L  N  Y  A  R  I  Y  L  A  N  L  I  P  N  E  V  K  R  V  I  Y  L  D  S  D  L  V  M  V  D  D  I  A  K  L  W  K  V  E  L  G  D  K  V  L  A  A  P  E  Y  C  Q  A  N  F  T  V  Y  F  T  E  A  F  W  S  D  P  Y  M  P  R  T  F  E  G  R  K  P  C  Y  F  N  T  G  V  L  V  M  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16896" stop="16132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DINIITISNAKSWMAFWSLSSSLPLLGLLSLLLSHQTSLITSTNSDNVHIHQVSDGRVGSNSSVFREAPAFRNGDTCGNNDRMHVAMTLDANYLRGTMAAVLSILQHSTCPEDVTFHFLWVRHEHEVFSSIKATFPYLNFKVYRFDVHRVRGLISKSIRQALDQPLNYARIYLANLIPNEVKRVIYLDSDLVMVDDIAKLWKVELGDKVLAAPEYCQANFTVYFTEAFWSDPYMPRTFEGRKPCYFNTGVLVMDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="22004" PGL_stop="26755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22004" e_stop="22254"/>
            <exon e_start="22391" e_stop="22492"/>
            <exon e_start="22570" e_stop="22615"/>
            <exon e_start="23367" e_stop="23456"/>
            <exon e_start="24485" e_stop="24550"/>
            <exon e_start="24746" e_stop="24814"/>
            <exon e_start="26054" e_stop="26755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.438" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.345" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="22004" e_stop="22254" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22391" e_stop="22492" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.438" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22570" e_stop="22615" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22616" i_stop="23366" i_length="751"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23367" e_stop="23456" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23457" i_stop="24484" i_length="1028"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24550" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.345" acc_prob="0.986">
            <gDNA_intron_boundary i_start="24551" i_stop="24745" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24746" e_stop="24814" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24815" i_stop="26053" i_length="1239"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="26054" e_stop="26755" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22004" stop="22254"/>
              <exon start="22391" stop="22492"/>
              <exon start="22570" stop="22615"/>
              <exon start="23367" stop="23456"/>
              <exon start="24485" stop="24550"/>
              <exon start="24746" stop="24814"/>
              <exon start="26054" stop="26755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22045" stop="22254"/>
              <exon start="22391" stop="22492"/>
              <exon start="22570" stop="22615"/>
              <exon start="23367" stop="23456"/>
              <exon start="24485" stop="24550"/>
              <exon start="24746" stop="24814"/>
              <exon start="26054" stop="26196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22047" stop="22254"/>
              <exon start="22391" stop="22483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22047" stop="22254"/>
              <exon start="22391" stop="22461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22066" stop="22254"/>
              <exon start="22391" stop="22492"/>
              <exon start="22570" stop="22596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22418" stop="22492"/>
              <exon start="22570" stop="22615"/>
              <exon start="23367" stop="23456"/>
              <exon start="24485" stop="24550"/>
              <exon start="24746" stop="24814"/>
              <exon start="26054" stop="26455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26309" stop="26755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313719" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTACAAGCTTGGCAAACAGGGTTTAAGAGAGGTTTTAGGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA : AGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAG : GTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAG : GTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAG : AGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGT : GCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAG : CTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAATGGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</gDNA_template>
            <first_frame> H  C  T  S  L  A  N  R  V  *  E  R  F  *  G  F  F  C  T  S  S  S  S  S  S  F  C  S  Q  N  Q  K  K  M  R  G  I  Q  L  S  F  S  N  T  Q  K  L  R  L  E  K  A  L  A  Q  L  E  S  F  S  S  K  L  N  S  N  A  T  V  I  V  A  D  K  I  P  V  D  E  D  A  A  L  K :   G  H  G  T  L  E  M  G  N  D  V  V  A  S  V  C  G  V  V  E  R  V  N  K  L  V  Y  V  R  P  L  R  A  R :   Y  K  P  E  I  G  D  I  I  V  G  R  V  I  E  :  V  A  P  K  R  W  R  L  E  I  N  F  S  Q  D  A  V  L  M  L  S  S  M  N  L  P  D  G  I  Q  :  R  R  R  T  A  V  D  E  L  N  M  R  S  I  F  V  E  N  D  V  I  C  :  A  E  V  R  G  F  Q  H  D  G  S  L  H  L  Q  A  R  S  Q  K  Y  G  K  :  L  E  R  G  K  L  L  K  I  P  P  Y  L  V  K  R  R  K  Q  H  F  H  H  L  D  Q  Y  G  V  D  L  I  F  G  C  N  G  L  I  W  V  G  E  H  I  D  V  K  D  V  M  V  E  D  Q  V  N  K  S  D  P  Q  N  T  H  S  S  S  L  P  G  S  S  E  E  P  T  D  T  P  L  E  I  R  Q  Y  I  C  R  I  A  N  A  I  T  V  F  S  A  L  G  F  M  V  N  L  D  S  I  M  E  T  V  T  L  S  L  S  L  N  L  G  V  H  E  M  L  E  A  E  F  H  V  R  V  A  E  Q  E  A  E  R  R  S  T  S  K  R  R  R  *  F  T  T  H  H  L  H  L  P  F  L  D  C  R  L  C  K  R  *  K  R  L  G  I  Y  *  A  E  S  G  S  A  M  S  P  F  N  *  K  R  S  V  K  E  F  P  S  E  Y  P  L  K  F  T  L  L  I  Y  V  H  *  *  G  V  C  S  *  R  S  K  F  F  F  P  A  M  K  I  F  L  M  F  S </first_frame>
            <second_frame>  I  V  Q  A  W  Q  T  G  F  K  R  G  F  R  V  S  S  A  L  V  L  L  L  L  P  F  V  H  K  I  R  K  K  *  E  E  Y  S  Y  L  S  A  T  P  K  S  *  D  *  K  K  H  *  R  N  W  N  P  F  L  R  S  L  I  P  M  P  L  S  L  L  Q  T  K  F  Q  S  T  K  M  L  P  S   : K  D  M  G  R  W  R  W  A  M  M  L  L  Q  V  Y  V  E  W  L  S  G  *  I  S  L  F  M  L  D  L  *  G  P   : G  I  S  R  R  L  V  I  L  *  S  A  A  L  L  R :   L  L  Q  R  D  G  G  W  K  L  I  S  A  K  T  L  Y  *  C  S  L  L  *  I  F  Q  M  A  F  R :   G  G  E  Q  Q  L  M  N  S  I  C  E  A  Y  L  W  R  M  M  S  S  V :   L  K  S  V  V  S  N  M  M  G  V  Y  T  S  K  L  E  A  K  S  M  E  S :   L  K  E  G  N  Y  S  K  S  L  H  I  *  *  K  G  V  N  S  I  S  T  I  *  I  S  M  E  L  T  *  F  L  A  A  M  D  *  F  G  L  G  N  T  L  M  *  K  M  *  W  W  R  I  K  *  I  S  P  I  H  R  T  P  I  H  Q  A  Y  Q  V  L  V  K  N  Q  L  I  H  H  W  K  *  D  N  I  Y  A  G  *  Q  M  P  S  L  Y  S  Q  L  *  A  S  W  L  I  W  T  P  *  W  R  Q  L  P  *  A  Y  L  *  T  L  V  Y  M  R  C  L  K  Q  N  S  M  F  E  L  L  S  K  K  L  N  D  G  A  H  Q  K  G  G  D  S  L  Q  L  I  I  Y  I  C  L  S  W  I  V  D  Y  A  K  D  R  R  D  *  E  S  I  K  L  N  R  V  A  L  C  H  P  L  I  E  K  D  L  *  K  S  F  L  L  N  I  P  L  N  S  H  F  *  F  M  C  I  S  K  E  C  A  A  E  D  Q  S  F  S  S  Q  Q  *  K  F  F  L  C  F   </second_frame>
            <third_frame>   L  Y  K  L  G  K  Q  G  L  R  E  V  L  G  F  L  L  H  *  F  F  F  F  F  L  L  F  T  K  S  E  K  N  E  R  N  T  V  I  F  Q  Q  H  P  K  A  K  I  R  K  S  I  S  A  I  G  I  L  F  F  E  A  *  F  Q  C  H  C  H  C  C  R  Q  N  S  S  R  R  R  C  C  P  Q  :  R  T  W  D  V  G  D  G  Q  *  C  C  C  K  C  M  W  S  G  *  A  G  E  *  A  C  L  C  *  T  F  K  G  Q  :  V  *  A  G  D  W  *  Y  Y  S  R  P  R  Y  *   : G  C  S  K  E  M  E  V  G  N  *  F  Q  P  R  R  C  T  N  A  L  F  Y  E  S  S  R  W  H  S   : E  A  A  N  S  S  *  *  T  Q  Y  A  K  H  I  C  G  E  *  C  H  L   : C  *  S  P  W  F  P  T  *  W  E  S  T  P  P  S  *  K  P  K  V  W  K   : A  *  K  R  E  T  T  Q  N  P  S  I  S  S  E  K  A  *  T  A  F  P  P  S  R  S  V  W  S  *  L  D  F  W  L  Q  W  I  N  L  G  W  G  T  H  *  C  K  R  C  N  G  G  G  S  S  K  *  V  R  S  T  E  H  P  F  I  K  L  T  R  F  *  *  R  T  N  *  Y  T  T  G  N  K  T  I  Y  M  Q  D  S  K  C  H  H  C  I  L  S  F  R  L  H  G  *  F  G  L  H  N  G  D  S  Y  L  E  L  I  F  K  P  W  C  T  *  D  A  *  S  R  I  P  C  S  S  C  *  A  R  S  *  T  T  E  H  I  K  K  E  E  I  V  Y  N  S  S  S  T  F  A  F  L  G  L  S  I  M  Q  K  I  E  E  I  R  N  L  L  S  *  I  G  *  R  Y  V  T  L  *  L  K  K  I  C  K  R  V  S  F  *  I  S  P  *  I  H  T  F  D  L  C  A  L  V  R  S  V  Q  L  K  I  K  V  F  L  P  S  N  E  N  F  S  Y  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22046" stop="22254"/>
                    <exon start="22391" stop="22492"/>
                    <exon start="22570" stop="22615"/>
                    <exon start="23367" stop="23456"/>
                    <exon start="24485" stop="24550"/>
                    <exon start="24746" stop="24814"/>
                    <exon start="26054" stop="26506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFFCTSSSSSSFCSQNQKKMRGIQLSFSNTQKLRLEKALAQLESFSSKLNSNATVIVADKIPVDEDAALKGHGTLEMGNDVVASVCGVVERVNKLVYVRPLRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLERGKLLKIPPYLVKRRKQHFHHLDQYGVDLIFGCNGLIWVGEHIDVKDVMVEDQVNKSDPQNTHSSSLPGSSEEPTDTPLEIRQYICRIANAITVFSALGFMVNLDSIMETVTLSLSLNLGVHEMLEAEFHVRVAEQEAERRSTSKRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32241" PGL_stop="31363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32241" e_stop="31363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32241" e_stop="31363" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32241" stop="31363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</gDNA_template>
            <first_frame> I  W  S  V  M  L  Y  E  K  Q  S  T  I  L  *  F  R  *  R  D  S  E  K  F  I  F  R  C  F  Y  G  C  H  *  W  N  G  I  *  L  C  C  F  G  T  L  C  K  D  C  P  C  I  Y  *  A  A  G  R  T  F  C  L  G  I  V  K  R  Y  G  V  F  L  Y  S  Y  M  F  L  R  A  S  Y  P  I  F  F  C  K  S  L  I  C  S  L  E  K  G  I  S  *  R  *  E  W  C  G  R  V  L  L  H  C  R  *  N  E  E  H  M  G  N  D  L  Q  I  Y  M  V  G  N  *  T  L  *  S  H  Q  K  K  F  F  C  K  R  Q  T  F  S  S  *  G  Y  K  V  *  F  N  T  F  P  T  H  L  A  P  V  A  F  N  Q  D  I  F  F  E  L  M  I  N  V  F  H  D  C  L  Y  N  S  F  R  *  I  W  Y  M  F  L  E  I  Y  Y  I  W  F  L  S  *  K  I  *  *  M  *  *  S  V  L  R  Y  I  S  *  *  N  C  N  V  D  L  E  I  M  I  K  N  R  *  I  K  Q  P  K  Q  I  Y  Y  S  V  E  G  S  Y  V  V  S  I  L  L  Q  E  *  W  L  T  R  S  S  S  S  F  D  T  E  E  I  V  *  F  A  T  L  Q  F  L  I  Y  *  E  F  Y  I  L </first_frame>
            <second_frame>  F  G  Q  S  C  Y  M  K  S  N  P  L  F  F  S  F  V  S  V  I  V  K  N  L  F  S  G  A  F  M  D  A  I  S  G  M  E  F  D  F  V  A  S  G  H  Y  A  K  I  V  H  A  S  T  E  Q  L  D  E  P  S  V  L  E  L  S  K  D  M  V  C  F  Y  I  R  T  C  F  L  E  P  L  T  L  F  S  F  V  K  V  *  Y  V  H  L  R  R  G  Y  L  E  D  E  S  G  V  E  E  S  C  F  T  V  G  K  M  K  N  I  W  E  M  T  Y  R  Y  T  W  L  G  I  K  H  Y  S  P  I  K  R  S  S  F  V  R  D  R  H  L  A  V  E  D  T  K  F  D  L  T  P  S  Q  P  T  *  P  P  L  L  L  T  K  I  S  S  L  N  L  *  S  T  S  F  T  T  V  C  I  I  L  S  G  K  F  G  I  C  F  L  R  Y  I  T  F  G  S  Y  L  E  K  Y  S  K  C  D  E  A  S  *  D  I  S  H  N  E  I  V  M  *  I  S  K  L  *  L  K  T  D  K  *  N  N  Q  S  K  Y  I  I  L  L  K  V  H  M  *  Y  Q  Y  C  S  K  N  D  G  *  L  G  V  H  H  L  L  I  Q  K  K  *  F  N  L  P  H  F  N  S  *  F  T  E  S  F  T  S   </second_frame>
            <third_frame>   L  V  S  H  V  I  *  K  A  I  H  Y  S  L  V  S  L  A  *  *  *  K  I  Y  F  Q  V  L  L  W  M  P  L  V  E  W  N  L  T  L  L  L  R  D  I  M  Q  R  L  S  M  H  L  L  S  S  W  T  N  L  L  S  W  N  C  Q  K  I  W  C  V  F  I  F  V  H  V  S  *  S  L  L  P  Y  F  L  L  *  K  F  D  M  F  T  *  E  G  D  I  L  K  M  R  V  V  W  K  S  L  A  S  L  *  V  K  *  R  T  Y  G  K  *  L  T  D  I  H  G  W  E  L  N  I  I  V  P  S  K  E  V  L  L  *  E  T  D  I  *  Q  L  R  I  Q  S  L  I  *  H  L  P  N  P  P  S  P  R  C  F  *  P  R  Y  L  L  *  T  Y  D  Q  R  L  S  R  L  S  V  *  F  F  Q  V  N  L  V  Y  V  S  *  D  I  L  H  L  V  L  I  L  K  N  I  V  N  V  M  K  R  L  K  I  Y  L  I  M  K  L  *  C  R  S  R  N  Y  D  *  K  Q  I  N  K  T  T  K  A  N  I  L  F  C  *  R  F  I  C  S  I  N  T  A  P  R  M  M  V  N  *  E  F  I  I  F  *  Y  R  R  N  S  L  I  C  H  T  S  I  P  D  L  L  R  V  L  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32240" stop="31968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGQSCYMKSNPLFFSFVSVIVKNLFSGAFMDAISGMEFDFVASGHYAKIVHASTEQLDEPSVLELSKDMVCFYIRTCFLEPLTLFSFVKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31967" stop="31749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVHLRRGYLEDESGVEESCFTVGKMKNIWEMTYRYTWLGIKHYSPIKRSSFVRDRHLAVEDTKFDLTPSQPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 68 chains have been computed
$ 
$ memory statistics:
$ 111240 bytes spliced alignments in total
$ 55 spliced alignments have been stored
$ 2022 bytes was the average size of a spliced alignment
$ 14552 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1819 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 69 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:20:25
-->
