<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:49:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561806" ref_strand="+" ref_description="SGN-E561806 [19349]">
      <seq>atgatatgtgcatttctccagcccagagttgtaagagcgagactctcagtaccctggagatttgcccagcgcgcaaaggcaatcaagaataaggctgttgtcaatgaggaaatgcaagatgatgtaaacgtcttgagggaagtaatacgacagttaaaggcaaacacctaaacccatttttgtttgtatctgtcttaacaattggctggcgtattcctgtttttgtgagtcttggtggaatgaatgccctcttttcctttctctttacaggatgaactgataagagtgaaggccaatggatctcaagcagatcaaaatggaaatcattcatcggggtggaatgcgcgtagaagcttaaaccttttgaaattcagcctcaaccgtccaatgacattacctcctctagatgaagatggtgacacagaaatggagatcgttgaggaagctgaactattaggtctcctaccgggaggaagtaaagaggttggtatcttgcgaaaaactctttccaagagtttcttggttggtccttctgaaggaggtaacgaggaaaagcacagctcatgcaagggagaggtaggttctgaggatgcagacatcaccatggaggaagaggtacctgaacaagttgggcaatctgaaaacaaagttattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="2521" stop="1093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2221" g_stop="2193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2192" i_stop="2022" i_length="171">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2021" g_stop="1393" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="658" r_length="630" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E561806" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2221" e_stop="2193"/>
          <exon e_start="2021" e_stop="1393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATGTGCCATTTCTCCAGCCCAGAGGTAGAAACAGAACCATATTTGCCTCAATTGTATTTCATTCTTGTAAAGTTTACATTTCAATATCTTTAACTATTCTTGAAGTTCTCCACTCGTGGGATTACACTAGGTATGGTGTTGTTGTATATGTAATTGTTGATAATTTGGAGTCCTTTATTCTTCTTGATAATGCAGTTGTAAGAGCGAGACTCTCAGTACCCT-GAGATTTGCCCAGCGTGCAAAGGCAATCAAGAATAAGGCTGTTGTCAACGAGGAGATGCAAGATGATGTAAACATCTTGAGAGAAGTAATACGACAGTTAAAGGCAAACACCTGAACTCATTTTTGTTTGTATCTGTCTTAATAATTGGCTGGCGTATTCCTGTTTTTGTGAGTCTTGGTGAAATGAATGCCCTTTTTTCCTTTCTCTTTACAGGATGAACTGATAAGAGTAAAGGCCAATGGATCTCAAGCAGATCAAAAAGGAAATCATTCATTGGGGTGGAATGCACGTAGAAGCTTAAACCTTTTGAAATTCAACCTCAACCGTCCAATGACAGTACCTCCTCTAGATGAAGATGGTGACACAGAAATGGAGATCGTTGAGGAAGCTGAACTATTAGGTCTCCTGCCGGGAGGAAGTAAAGAGGTCGGTATCTTGCGAAAAACTCTTTCCAAGAGTTTCTTGGTTGGTCCTTCTGAAGGACGTAACGAGGAAAAGCACAGCTCATGCAAGGGAGAGGTAGGTTCTGAGGATGCAGACATCACCATGGAGGAAGAGGTACCTGAACAAGTTGTCCAACGTGATAACAAAGTTATTCATG</genome_strand>
        <mrna_strand>ATGATATGTG-CATTTCTCCAGCCCAGAG...........................................................................................................................................................................TTGTAAGAGCGAGACTCTCAGTACCCTGGAGATTTGCCCAGCGCGCAAAGGCAATCAAGAATAAGGCTGTTGTCAATGAGGAAATGCAAGATGATGTAAACGTCTTGAGGGAAGTAATACGACAGTTAAAGGCAAACACCTAAACCCATTTTTGTTTGTATCTGTCTTAACAATTGGCTGGCGTATTCCTGTTTTTGTGAGTCTTGGTGGAATGAATGCCCTCTTTTCCTTTCTCTTTACAGGATGAACTGATAAGAGTGAAGGCCAATGGATCTCAAGCAGATCAAAATGGAAATCATTCATCGGGGTGGAATGCGCGTAGAAGCTTAAACCTTTTGAAATTCAGCCTCAACCGTCCAATGACATTACCTCCTCTAGATGAAGATGGTGACACAGAAATGGAGATCGTTGAGGAAGCTGAACTATTAGGTCTCCTACCGGGAGGAAGTAAAGAGGTTGGTATCTTGCGAAAAACTCTTTCCAAGAGTTTCTTGGTTGGTCCTTCTGAAGGAGGTAACGAGGAAAAGCACAGCTCATGCAAGGGAGAGGTAGGTTCTGAGGATGCAGACATCACCATGGAGGAAGAGGTACCTGAACAAGTTGGGCAATCTGAAAACAAAGTTATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723470" ref_strand="+" ref_description="SGN-E723470 [FC20CD05]">
      <seq>gccgaattgaccgccattacgtgtccattaaaaaactcctatatatagtcccccttcttcctttcttcttcatcaaaaaaaaaaagaaaaaaaatccccaatccccaagggaaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagccaattttcttcatcaaacgcattaggcggaaagctcggcgaaaaaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaaaatctaggtaagaactgtgtcaaaaaacacaacaaaaatttgcggcatatcaagggggctttaagttctttattgagtttttctcaagttgttgaaccaaaaaaacaagttgtttcgggggtaaaatattatcaaaaaatcccagctatggttaaatcatcaagctcaccaaaattgttcaatgctgttgttgttgtaaaagcttggaaaaaaaaaaaggaattgcttactttttctccttctccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10030" stop="11117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10321" g_stop="10817" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E723470" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10321" e_stop="10817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCACCACCGCCATTACGTGTCCAACAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCA</genome_strand>
        <mrna_strand>GCCGAATTGACCGCCATTACGTGTCCATTAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCCCCAAGGGAAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGCCAATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGAAAAAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAAATCTAGGTAAGAACTGTGTCAAAAAACACAACAAAAATTTGCGGCATATCAAGGGGGCTTTAAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAACCAAAAAAACAAGTTGTTTCGGGGGTAAAATATTATCAAAAAATCCCAGCTATGGTTAAATCATCAAGCTCACCAAAATTGTTCAATGCTGTTGTTGTTGTAAAAGCTTGGAAAAAAAAAAAGGAATTGCTTACTTTTTCTCCTTCTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309170" ref_strand="+" ref_description="SGN-E309170 [cLEZ-12-E21]">
      <seq>aaaaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagtaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10108" stop="11294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10408" g_stop="10994" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E309170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10408" e_stop="10994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATG</genome_strand>
        <mrna_strand>AAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAG-TAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553871" ref_strand="+" ref_description="SGN-E553871 [cTSC-2-H7]">
      <seq>aaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttatttttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10110" stop="11315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10410" g_stop="11015" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E553871" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10410" e_stop="11015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTT-AACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGAT</genome_strand>
        <mrna_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357600" ref_strand="+" ref_description="SGN-E357600 [cTOS-24-A5]">
      <seq>aaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtaatgctaatggtggttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctaatttgagttctcctgtggactatgtgatgccataatccatgaatgacatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10110" stop="11298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10410" g_stop="10998" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E357600" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10410" e_stop="10998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</genome_strand>
        <mrna_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAATGCTAATGGTGGTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTAATTTGAGTTCTCCTGTGGACTATGTGATGCCATAATCCATGAATGACATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551559" ref_strand="+" ref_description="SGN-E551559 [cTSB-1-B8]">
      <seq>aaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10111" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10411" g_stop="11030" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E551559" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10411" e_stop="11030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTC</genome_strand>
        <mrna_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553752" ref_strand="+" ref_description="SGN-E553752 [cTSC-2-B8]">
      <seq>aaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaagcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10111" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10411" g_stop="11029" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E553752" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10411" e_stop="11029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCT</genome_strand>
        <mrna_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAAGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266236" ref_strand="+" ref_description="SGN-E266236 [cLEI-3-M2]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaagtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaagaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10114" stop="11321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10414" g_stop="11032" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E266236" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10414" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTA</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAAGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAAGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352697" ref_strand="+" ref_description="SGN-E352697 [cTOS-11-O16]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10114" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10414" g_stop="11028" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E352697" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10414" e_stop="11028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATC</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354030" ref_strand="+" ref_description="SGN-E354030 [cTOS-16-O19]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10114" stop="11304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10414" g_stop="11005" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E354030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10414" e_stop="11005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGT</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266444" ref_strand="+" ref_description="SGN-E266444 [cLEI-3-F2]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattatcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagttcttctcaagttgttgaagcagaaaaacaagttgcttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactataatttgtagcctttttattttttttaacctatattgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10114" stop="11298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10414" g_stop="10998" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E266444" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10414" e_stop="10998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTATCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTCTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGCTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTATAATTTGTAGCCTTTTTATTTTTTTTAACCTATATTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357825" ref_strand="+" ref_description="SGN-E357825 [cTOS-24-E8]">
      <seq>cccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10117" stop="11256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10417" g_stop="10956" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E357825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10417" e_stop="10956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTT</genome_strand>
        <mrna_strand>CCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243257" ref_strand="+" ref_description="SGN-E243257 [cLEE-2-J18]">
      <seq>caatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattacgcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaatcgttcgatgctgttgttgttggtaaagcttgtgagaagaagaaggaattgcttacgtattctccttctccttcaccggctacaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10119" stop="11131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10419" g_stop="10831" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E243257" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10419" e_stop="10831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTG</genome_strand>
        <mrna_strand>CAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTACGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATCGTTCGATGCTGTTGTTGTTGGTAAAGCTTGTGAGAAGAAGAAGGAATTGCTTACGTATTCTCCTTCTCCTTCACCGGCTACAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689717" ref_strand="+" ref_description="SGN-E689717 [LH_Ea01K03]">
      <seq>cattaaaaattctctcatcaatcctcattctcttcttcattttcactctattttcttcatcaaacgcattaggcggaaaactcggcggaagaacacaaatcaaagacgtgaaaacaaataaggaaattcaagatctaggtaagtactgcgtcgaagaacacaacagaaatttgcggtataaaaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcagctggttcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggtttgatagtggctaaaagttaaaacttctattagtgctaatgttgttcatctaattttgaagtactttaatttgtagcctttttatttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10142" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10438" g_stop="11025" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E689717" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10438" e_stop="11025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGG-TTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCT</genome_strand>
        <mrna_strand>CATTAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCACTCTATTTTCTTCATCAAACGCATTAGGCGGAAAACTCGGCGGAAGAACACAAATCAAAGACGTGAAAACAAATAAGGAAATTCAAGATCTAGGTAAGTACTGCGTCGAAGAACACAACAGAAATTTGCGGTATAAAAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCAGCTGGTTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTTGATAGTGGCTAAAAGTTAAAACTTCTATTAGTGCTAATGTTG-TTCATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTA-TTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693557" ref_strand="+" ref_description="SGN-E693557 [LH_Ea01K03](-)">
      <seq>aaaaattctctcatcaatcctcattctcttcttcattttcactctattttcttcatcaaacgcattaggcggaaaactcggcggaagaacacaaatcaaagacgtgaaaacaaataaggaaattcaagatctaggtaagtactgcgtcgaagaacacaacagaaatttgcggtataaaaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcagctggttcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttctccggctaccaagtgaattttcgatggtttgatagtgggtaaaagttaaaacttctattagtgctaatgttgttcatctaattttgaagtactttaatttgtagcctttttatttttttaacaaggtttgagttctcttgtgtcctatgtgatgcaatacttaaatggatgacatatgtattagtatgttatttagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10142" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10442" g_stop="11030" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E693557" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10442" e_stop="11030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGG-TTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATA-ATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTC</genome_strand>
        <mrna_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCACTCTATTTTCTTCATCAAACGCATTAGGCGGAAAACTCGGCGGAAGAACACAAATCAAAGACGTGAAAACAAATAAGGAAATTCAAGATCTAGGTAAGTACTGCGTCGAAGAACACAACAGAAATTTGCGGTATAAAAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCAGCTGGTTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCTCCGGCTACCAAGTGAATTTTCGATGGTTTGATAGTGGGTAAAAGTTAAAACTTCTATTAGTGCTAATGTTG-TTCATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTA-TTTTTTTAACAAGGTTTGAGTTCTCTTGTGTCCTATGTGATGCAATACTTAAATGGATGACATATGTATTAGTATGTTATT-TAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287327" ref_strand="+" ref_description="SGN-E287327 [cLES-15-H15]">
      <seq>aaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10142" stop="11264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10442" g_stop="10973" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E287327" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10442" e_stop="10973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCA</genome_strand>
        <mrna_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348694" ref_strand="+" ref_description="SGN-E348694 [cTOF-30-F12]">
      <seq>tcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaatnntcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatggtgnttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctatttttgagtctcttgtgtactatgtgatgcantaatcaatgaatgacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10162" stop="11293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10462" g_stop="10993" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E348694" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10462" e_stop="10993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATAT</genome_strand>
        <mrna_strand>TCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATNNTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGGTGNTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTTGAGTCTCTTGTGTACTATGTGATGCANTAATCAATGAATGACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352159" ref_strand="+" ref_description="SGN-E352159 [cTOS-13-A22]">
      <seq>tcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagatannnnnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10219" stop="11316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10519" g_stop="11017" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="528"/>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E352159" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10519" e_stop="11017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA</genome_strand>
        <mrna_strand>TCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212403" ref_strand="+" ref_description="SGN-E212403 [cLEC-74-H1]">
      <seq>ggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgaggtctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="10259" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10559" g_stop="11017" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11018" i_stop="11202" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11203" g_stop="11216" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="473" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E212403" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10559" e_stop="11017"/>
          <exon e_start="11203" e_stop="11216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTAGTTACTATATCAAATCTCGAAATATTTCATTAATTGATTCTAGGAAATATCATCACCTCCTAATGCAAAGGAGAAGGAAATGAGTAATATTTAGACAAAAAAATGAAGGAAACAAACACAATGTGTTGATATATTAGGGGCATTGGATGCCTCCATTAATAATTTAACAGAAAAATGTCAAAGA</genome_strand>
        <mrna_strand>GGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGGTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA.........................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423436" ref_strand="-" ref_description="SGN-E423436 [STM-42-E1]">
      <seq>ttttttagacacgccactgtgcaatgcacataccacaggaacagatgttctttgggctggtctaccaatgataacccttccccttgagaagatggctactagagttgctggttctctgtgtttggcgacaggacttggtgatgagatgattgtcagcagtatgaaggaatatgaggagaaggcggtgtcactggcactaaatcgtccaaagctccaagatttcaccaatagactcaaggctgtacgaatgagttgccctttatttgatacaacacgttgggtgaggaatttggaacgtttttactttaagatgtggaatttttattgttccggccagcatcctcagcccttcaaagtgacggagaatgactcagaatttccttttgaccgctagatgtagtagggaaggaagagaacatgattgtacataaaacaagagaacataaaaattcctatttatatagaagtatataaattactgcatttaggtgtttgttgaaatgtgattcaagtctcaagtgttgagcatattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="15526" stop="14199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15332" g_stop="15321" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15224" g_stop="15078" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="159" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15077" i_stop="14925" i_length="153">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14924" g_stop="14804" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="280" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14803" i_stop="14730" i_length="74">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14729" g_stop="14499" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="517" r_length="237" r_score="0.823"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="553"/>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E423436" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423436" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15332" e_stop="15321"/>
          <exon e_start="15224" e_stop="15078"/>
          <exon e_start="14924" e_stop="14804"/>
          <exon e_start="14729" e_stop="14499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACTTGGTGCTGAGATGATTGTCAGCAGGTATGTGTTGTATACTTGATGTAATCGCTGGGAAGGGTATGACCGATAGTACCTCGACTCAAGGACAAGTGCTTAATGAGTGACTTAGATGTTGCAACATAAATGATAGTTGTCCTTTTTACTTTTTCTTTCCTTAATTCTGTTACTTTGCAGTATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTCAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGGGTGAGTAAGATTTACTTTACTGCACGACCTTGTTGATTCTAGAATTTTCATTCATTCTCATTTTGCATTTTCAGGTGAGGAATCTGGAACGTTCTTACTTTAAGATGTGGAATCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCCAAGTGACCGAGAATGACTCAGAATTTCCTTTTGACCGCTAGA--T-GTA--GCA-G--G-GAACATGGTTGTACATAAAACAAGAGAA-GT-TAAATTCCTATTTTTATATACAAGTATATAAATTACTACTGCATTTAGGTGTTTGTTCAAATGTGGTTCAAGTCTCA</genome_strand>
        <mrna_strand>TTTTTTAGACAC................................................................................................GCCACTGTGCAATGCACATACCACAGGAACAGATGTTCTTTGGGCTGGTCTACCAATGATAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGTTCTCTGTGTTTGGCGACAGGACTTGGTGATGAGATGATTGTCAGCAG.........................................................................................................................................................TATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTAAATCGTCCAAAGCTCCAAGATTTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGG..........................................................................GTGAGGAATTTGGAACGTTTTTACTTTAAGATGTGGAATTTTTATTGTTCCGGCCAGCATCCTCAGCCCTTCAAAGTGACGGAGAATGACTCAGAATTTCCTTTTGACCGCTAGATGTAGTAGGGAAGGAAGAGAACATGATTGTACATAAAACAAGAGAACATAAAAATTCCTA--TTTATATAGAAGTATATAAA-T--TACTGCATTTAGGTGTTTGTTGAAATGTGATTCAAGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600306" ref_strand="+" ref_description="SGN-E600306 [53314]">
      <seq>ccgcgcacatgctgctgcccaaggcctgcaaccagaccaaattattttcacagatgttgcaatgaaacaagagcacatcaagcgcagctccttggctgatcttttcttggatacgccactgtgcaatgcacataccacaggaacagatgttctttgggctggtctaccaatgataacccttccccttgagaagatggctactagagttgctggttctctgtgtttggcgacaggacttggtgatgagatgattgtcagcagtatgaaggaatatgaggagaaggcagtgtcactggcactaaatcgtccaaagctccaagatctcaccaatagactcaaggctgtacgaatgagttgccctttatttgatacaacacgttgggtgaggaatctggaacgctcttactttaagatgtggagtctctattgctccggccagcatcctcagcccttcaaagtgaccgagaatgactcagaatttccttttgaccgctagatgtagtagggaaggaagagaacatgattgtacataaaacaagagaacataaaaattcctatttatatagaagtatataaattactgcatttaggtgtttgatgaaatgtgattctggaaactctcgatgaaagttcattagttgctcaagtgcaagcagatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="15729" stop="14125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15531" g_stop="15524" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15426" g_stop="15321" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="114" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15224" g_stop="15078" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="261" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15077" i_stop="14925" i_length="153">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14924" g_stop="14804" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="382" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14803" i_stop="14730" i_length="74">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14729" g_stop="14511" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="607" r_length="225" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E600306" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15531" e_stop="15524"/>
          <exon e_start="15426" e_stop="15321"/>
          <exon e_start="15224" e_stop="15078"/>
          <exon e_start="14924" e_stop="14804"/>
          <exon e_start="14729" e_stop="14511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACTTGGTGCTGAGATGATTGTCAGCAGGTATGTGTTGTATACTTGATGTAATCGCTGGGAAGGGTATGACCGATAGTACCTCGACTCAAGGACAAGTGCTTAATGAGTGACTTAGATGTTGCAACATAAATGATAGTTGTCCTTTTTACTTTTTCTTTCCTTAATTCTGTTACTTTGCAGTATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTCAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGGGTGAGTAAGATTTACTTTACTGCACGACCTTGTTGATTCTAGAATTTTCATTCATTCTCATTTTGCATTTTCAGGTGAGGAATCTGGAACGTTCTTACTTTAAGATGTGGAATCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCCAAGTGACCGAGAATGACTCAGAATTTCCTTTTGACCGCTAGA--T-GTA--GCA-G--G-GAACATGGTTGTACATAAAACAAGAGAA-GT-TAAATTCCTATTTTTATATACAAGTATATAAATTACTACTGCATTTAGGTGTTTGTTCAAATGTG</genome_strand>
        <mrna_strand>CCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGATAC................................................................................................GCCACTGTGCAATGCACATACCACAGGAACAGATGTTCTTTGGGCTGGTCTACCAATGATAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGTTCTCTGTGTTTGGCGACAGGACTTGGTGATGAGATGATTGTCAGCAG.........................................................................................................................................................TATGAAGGAATATGAGGAGAAGGCAGTGTCACTGGCACTAAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGG..........................................................................GTGAGGAATCTGGAACGCTCTTACTTTAAGATGTGGAGTCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCAAAGTGACCGAGAATGACTCAGAATTTCCTTTTGACCGCTAGATGTAGTAGGGAAGGAAGAGAACATGATTGTACATAAAACAAGAGAACATAAAAATTCCTA--TTTATATAGAAGTATATAAA-T--TACTGCATTTAGGTGTTTGATGAAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428377" ref_strand="+" ref_description="SGN-E428377 [STM-50-O21]">
      <seq>cgcacatatttactcagagaagcttgtacatctccctcattgctattttgtcaacgattataagcaaaaaaactgtgacgtgctagatccaaacagccaactgaagcgctcagattatgggttgccagaggataaattcatatttgcatgtttcaatcagctttacaagatggatcctgagatttttattacatggtgcaatatccttaagcgtgtaccaaacagtgctctttggcttctcagatttccagctgcaggggagatgaggctccgcgcacatgctgctgcccaaggcctgcaaccagaccaaattattttcacagatgttgcaatgaaacaagagcacatcaagcgcagttccttggcggatcttttcttagacacgccactgtgcaatgcacataccacaggaacagatgttctttgggctggtctaccaatgataacccttccccttgagaagatggctactagagttgctggttctctgtgtttggcgacaggacttggtgatgagatgattgtcagcagtatgaaggaatatgaggagaaggcggtgtcactggcactaaatcgtccaaagctccaagatctcaccaatagactcaaggctgtacgaatgagttgccctttatttgatacaacacgttgggtgaggaatctggaaacgtcttanncttagatgtggaatctctattgctccggccagcatcctcagcccttcaaagtgacggagaatgactcagaatttccttttgaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="16461" stop="14318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16162" g_stop="16096" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15817" g_stop="15690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="195" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15606" g_stop="15524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="278" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15426" g_stop="15321" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="384" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15224" g_stop="15078" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="531" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15077" i_stop="14925" i_length="153">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14924" g_stop="14804" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="652" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14803" i_stop="14730" i_length="74">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14729" g_stop="14618" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="764" r_length="112" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E428377" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16162" e_stop="16096"/>
          <exon e_start="15817" e_stop="15690"/>
          <exon e_start="15606" e_stop="15524"/>
          <exon e_start="15426" e_stop="15321"/>
          <exon e_start="15224" e_stop="15078"/>
          <exon e_start="14924" e_stop="14804"/>
          <exon e_start="14729" e_stop="14618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATGGTAGTTACTTGGAATGATTTGAATTGGTCTACTTTTACCCTCACAAGCACTTGCTAAAAAACTTGCTGAGTTGGTATGTGCAGGTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACTTGGTGCTGAGATGATTGTCAGCAGGTATGTGTTGTATACTTGATGTAATCGCTGGGAAGGGTATGACCGATAGTACCTCGACTCAAGGACAAGTGCTTAATGAGTGACTTAGATGTTGCAACATAAATGATAGTTGTCCTTTTTACTTTTTCTTTCCTTAATTCTGTTACTTTGCAGTATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTCAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGGGTGAGTAAGATTTACTTTACTGCACGACCTTGTTGATTCTAGAATTTTCATTCATTCTCATTTTGCATTTTCAGGTGAGGAATCTGGAACGTTCTTACTTTAAGATGTGGAATCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCCAAGTGACCGAGAATGACTCAGAATTTCCTTTTGACCGCT</genome_strand>
        <mrna_strand>CGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA......................................................................................................................................................................................................................................................................................AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGTTGCCAGAGGATAAATTCATATTTGCATGTTTCAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG...................................................................................GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGGGAGATGAGGCTCCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGTTCCTTGGCGGATCTTTTCTTAGACAC................................................................................................GCCACTGTGCAATGCACATACCACAGGAACAGATGTTCTTTGGGCTGGTCTACCAATGATAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGTTCTCTGTGTTTGGCGACAGGACTTGGTGATGAGATGATTGTCAGCAG.........................................................................................................................................................TATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTAAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGG..........................................................................GTGAGGAATCTGGAAACGTCTTANNCTTAGATGTGGAATCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCAAAGTGACGGAGAATGACTCAGAATTTCCTTTTGACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479757" ref_strand="+" ref_description="SGN-E479757 [cSTD-11-O21]">
      <seq>cgcacatatttactcagagaagcttgtacatctccctcattgctatttttgtcaacgattattaagcaaaaaaacctgtgacgtgctagatccaaacagccaactgaagcgctcagattatgggttgccagaggataaattcatatttgcatgtttcaatcagctttacaagatggatcctgagatttttattacatggtgcaatatccttaagcgtgtaccaaacagtgctctttggcttctcagatttccagctgcaggggagatgaggctccgcgcacatgctgctgcccaaggcctgcaaccagaccaaattattttcacagatgttgcaatgaaacaagagcacatcaagcgcagttccttggcggatcttttcttagacacgccactgtgcaatgcacataccacaggaacagatgttctttgggctggtctaccaatgataacccttccccttgagaagatggctactagagttgctggttctctgtgtttggcgacaggacttggtgatgagatgattgtcagcagtatgaaggaatatgaggagaaagcngtgtcactggcactaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="16461" stop="14580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16162" g_stop="16096" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15817" g_stop="15690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="198" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15606" g_stop="15524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="281" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15426" g_stop="15321" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="387" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15224" g_stop="15078" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="534" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15077" i_stop="14925" i_length="153">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14924" g_stop="14880" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="579" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E479757" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16162" e_stop="16096"/>
          <exon e_start="15817" e_stop="15690"/>
          <exon e_start="15606" e_stop="15524"/>
          <exon e_start="15426" e_stop="15321"/>
          <exon e_start="15224" e_stop="15078"/>
          <exon e_start="14924" e_stop="14880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTA-TTTTGTCAACGATTA-TAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAA-CTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATGGTAGTTACTTGGAATGATTTGAATTGGTCTACTTTTACCCTCACAAGCACTTGCTAAAAAACTTGCTGAGTTGGTATGTGCAGGTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACTTGGTGCTGAGATGATTGTCAGCAGGTATGTGTTGTATACTTGATGTAATCGCTGGGAAGGGTATGACCGATAGTACCTCGACTCAAGGACAAGTGCTTAATGAGTGACTTAGATGTTGCAACATAAATGATAGTTGTCCTTTTTACTTTTTCTTTCCTTAATTCTGTTACTTTGCAGTATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTCAATCG</genome_strand>
        <mrna_strand>CGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTTGTCAACGATTATTAAGCAA......................................................................................................................................................................................................................................................................................AAAAACCTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGTTGCCAGAGGATAAATTCATATTTGCATGTTTCAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG...................................................................................GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGGGAGATGAGGCTCCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGTTCCTTGGCGGATCTTTTCTTAGACAC................................................................................................GCCACTGTGCAATGCACATACCACAGGAACAGATGTTCTTTGGGCTGGTCTACCAATGATAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGTTCTCTGTGTTTGGCGACAGGACTTGGTGATGAGATGATTGTCAGCAG.........................................................................................................................................................TATGAAGGAATATGAGGAGAAAGCNGTGTCACTGGCACTAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729264" ref_strand="+" ref_description="SGN-E729264 [LA20CB01]">
      <seq>ttataccaagggggcaagaaacgagatattcgccatgcagccagctccaatccaggtttcatacatgggtttccctggaaccacaggagcaacatacatagattatttggttacagatgagttcgtttcacctatgaagtatgcacatatttactcagagaagcttgtacatctccctcattgctattttgtcaacgattataagcaaaaaaactgtgacgtgctagatccaaacagccaactgaagcgctcagattatgggctgccggaggataaattcatatttgcatgttttaatcagctttacaagatggatcctgagatttttattacatggtgcaatatccttaagcgtgtaccaaacagtgctctttggcttctcagatttccagctgcaggagagatgaggctccgcgcacatgctgctgcccaaggcctgcaaccagaccaaattattttcacagatgttgcaatgaaacaagagcacatcaagcgcagctccttggctgatcttttcttggacacgccactgtgcaatgcacataccacaggaactgatgttctttgggctggtctaccaatggtaacccttccccttgagaagatggctactagagttgctggctctctgtgtttggcgacaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="16689" stop="14802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16381" g_stop="16271" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="121" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16182" g_stop="16096" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="208" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15817" g_stop="15690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="336" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15606" g_stop="15524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="419" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15426" g_stop="15321" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="525" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15224" g_stop="15102" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="648" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E729264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16381" e_stop="16271"/>
          <exon e_start="16182" e_stop="16096"/>
          <exon e_start="15817" e_stop="15690"/>
          <exon e_start="15606" e_stop="15524"/>
          <exon e_start="15426" e_stop="15321"/>
          <exon e_start="15224" e_stop="15102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAGGTAATTTGCTAATGACACCCTTGATATTACATATTTGCTGTTAACCTTTGCTCTCTATGGGTCCTTGATGCAATTTCCTTGTATGCAGTTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATGGTAGTTACTTGGAATGATTTGAATTGGTCTACTTTTACCCTCACAAGCACTTGCTAAAAAACTTGCTGAGTTGGTATGTGCAGGTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACT</genome_strand>
        <mrna_strand>GGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAG........................................................................................TTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA......................................................................................................................................................................................................................................................................................AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG...................................................................................GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACAC................................................................................................GCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697255" ref_strand="+" ref_description="SGN-E697255 [FA02AA11]">
      <seq>cggtgattttggcaaccatccactatcacatctaatgggttccgtttttgggatgcatgacaaagagaacgttgaggtgttctgctatgctttaagtccaaatgatggtacagagtggaggattcgcactcagacagaagctgagcattttattgatgtatcgtccttgacatctgatgtgatagcaaggatgattaatgaggatcaaatacagatacttatcaatctcaatggttataccaagggggcaagaaacgagatattcgccatgcagccagctccaatccaggtttcatacatgggtttccctggaaccacaggagcaacatacatagattatttggttacagatgagttcgtttcacctatgaagtatgcacatatttactcagagaagcttgtacatctccctcattgctattttgtcaacgattataagcaaaaaaactgtgacgtgctagatccaaacagccaactgaagcgctcagattatgggctgccggaggataaattcatatttgcatgttttaatcagctttacaagatggatcctgagatttttattacatggtgcaatatccttaagcgtgtaccaaacagtgctctttggcttctcagatttccagctgcaggagagatgaggctccgcgcacatgctgctgcccaaggcctgcaaccagaccaaattattttcacagatgttgcaatgaaacaagagcacatcaagcgcagctccttggctgatcttttcttggacacgccactgtgcaatgcacataccacaggaactgatgttctttgggctggtctaccaatgggtaccccttcccctgagaagatggctactagagttgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="17567" stop="14825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17267" g_stop="17192" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17099" g_stop="16932" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="244" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16381" g_stop="16271" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="355" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16182" g_stop="16096" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15817" g_stop="15690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="570" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15606" g_stop="15524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="653" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15426" g_stop="15321" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="759" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15224" g_stop="15125" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="859" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E697255" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17267" e_stop="17192"/>
          <exon e_start="17099" e_stop="16932"/>
          <exon e_start="16381" e_stop="16271"/>
          <exon e_start="16182" e_stop="16096"/>
          <exon e_start="15817" e_stop="15690"/>
          <exon e_start="15606" e_stop="15524"/>
          <exon e_start="15426" e_stop="15321"/>
          <exon e_start="15224" e_stop="15125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAGGTTAAGTTAATTTGTTACTTTTCCTTATCCTTTTTACCATTCACGACTTCACCACTTGTTCATGCTAAATCTCCAAGTACTTCTTTTCCTAGGTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAGGTACAGATTGAGACTCAATCCAGATCAATCCTAATTAGATTTTATATTTTTCTTTTTTTGCTAGTGTTGTTTGTGTGTGCCCAGTCCATGCACAGGGCCCATATGCTAGACCCATTAACATAATGAAAAGAAATGGGATGGAAAAAGTAGTTTCCTTTCTTGGAAATAATCCACAATAAACAAATAAATCAATGATTTCTGTGCCATCTCGGTTAAGCTAAGTTGTGGATATGAATGCAAACTCGAATACTTACCAATGAGAATTTGATCAGCCACGACTGGTTTGAGCAAATGAGTATAATAAGGATATTGCCTAACTAAAGTGCAAACCTGTCAAACAGGTCTCACTGTCTCATGAGGTACACATTTTGTTGGTCCTATATCCTATAATTGTTGTTTTAAGCCAAAAATATGTGTTACATCTTTCACCTTTTTGTAGATGCTGATTAATGTGCCCATATTTTGCTTTGCCTTCTATCCTGAGAGTTATTTTTTGAACGACTTCGTTTATCTAATGTGTCATCTTTGACTTCGGACTTGTGTGTTGCAGGGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAGGTAATTTGCTAATGACACCCTTGATATTACATATTTGCTGTTAACCTTTGCTCTCTATGGGTCCTTGATGCAATTTCCTTGTATGCAGTTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATGGTAGTTACTTGGAATGATTTGAATTGGTCTACTTTTACCCTCACAAGCACTTGCTAAAAAACTTGCTGAGTTGGTATGTGCAGGTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGC</genome_strand>
        <mrna_strand>CGGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAG............................................................................................GTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAG........................................................................................TTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA......................................................................................................................................................................................................................................................................................AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG...................................................................................GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACAC................................................................................................GCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGGTACCCCTTCCCCTGAGAAGATGGCTACTAGAGTTGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276930" ref_strand="+" ref_description="SGN-E276930 [cLEN-22-G8]">
      <seq>ggattcgcactcagacagaagctgagcattttattgatgtatcgtccttgacatctgatgtgatagcaaggatgattaatgaggatcaaatacagatacttatcaatctcaatggttataccaagggggcaagaaacgagatattcgccatgcagccagctccaatccaggtttcatacatgggtttccctggaaccacaggagcaacatacatagattatttggttacagatgagttcgtttcacctatgaagtatgcacatatttactcagagaagcttgtacatctccctcattgctattttgtcaacgattataagcaaaaaaactgtgacgtgctagatccaaacagccaactgaagcgctcagattatgggctgccggaggataaattcatatttgcatgttttaatcagctttacaagatggatcctgagatttttattacatggtgcaatatccttaagcgtgtaccaaacagtgctctttggcttctcagatttccagctgcaggagagatgaggctccgcgcacatgctgctgcccaaggcctgcaaccagaccaaattattttcacagatgttgcaatgaaacaagagcacatcaagcgcagctccttggctgatcttttcttggacacgccactgtgcaatgcacataccacaagaactgatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="17356" stop="14885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17056" g_stop="16932" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16381" g_stop="16271" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="236" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16182" g_stop="16096" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="323" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15817" g_stop="15690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="451" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15606" g_stop="15524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="534" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15426" g_stop="15321" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="640" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15224" g_stop="15185" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="680" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E276930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17056" e_stop="16932"/>
          <exon e_start="16381" e_stop="16271"/>
          <exon e_start="16182" e_stop="16096"/>
          <exon e_start="15817" e_stop="15690"/>
          <exon e_start="15606" e_stop="15524"/>
          <exon e_start="15426" e_stop="15321"/>
          <exon e_start="15224" e_stop="15185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAGGTACAGATTGAGACTCAATCCAGATCAATCCTAATTAGATTTTATATTTTTCTTTTTTTGCTAGTGTTGTTTGTGTGTGCCCAGTCCATGCACAGGGCCCATATGCTAGACCCATTAACATAATGAAAAGAAATGGGATGGAAAAAGTAGTTTCCTTTCTTGGAAATAATCCACAATAAACAAATAAATCAATGATTTCTGTGCCATCTCGGTTAAGCTAAGTTGTGGATATGAATGCAAACTCGAATACTTACCAATGAGAATTTGATCAGCCACGACTGGTTTGAGCAAATGAGTATAATAAGGATATTGCCTAACTAAAGTGCAAACCTGTCAAACAGGTCTCACTGTCTCATGAGGTACACATTTTGTTGGTCCTATATCCTATAATTGTTGTTTTAAGCCAAAAATATGTGTTACATCTTTCACCTTTTTGTAGATGCTGATTAATGTGCCCATATTTTGCTTTGCCTTCTATCCTGAGAGTTATTTTTTGAACGACTTCGTTTATCTAATGTGTCATCTTTGACTTCGGACTTGTGTGTTGCAGGGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAGGTAATTTGCTAATGACACCCTTGATATTACATATTTGCTGTTAACCTTTGCTCTCTATGGGTCCTTGATGCAATTTCCTTGTATGCAGTTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATGGTAGTTACTTGGAATGATTTGAATTGGTCTACTTTTACCCTCACAAGCACTTGCTAAAAAACTTGCTGAGTTGGTATGTGCAGGTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACACGTAAGAAGATTAAGAACATTCAGCTTGTCTTTCAAGAATCTTGTTCCGTTACATTTCATTTACTTGAATTTTGGTGTGGTTTTTTCTCACTTGTAGGCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTT</genome_strand>
        <mrna_strand>GGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAG........................................................................................TTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA......................................................................................................................................................................................................................................................................................AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG...................................................................................GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACAC................................................................................................GCCACTGTGCAATGCACATACCACAAGAACTGATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731841" ref_strand="+" ref_description="SGN-E731841 [LA28BD02]">
      <seq>ctctgtggtagctactcgctactcacttcctcccttcacccatccaccgccgctgccaattaaaggaggtggcaggatcaacaagctgacggttggatatgtgagcagcgattttggcaaccatccactatcacatctaatgggttccgtttttgggatgcatgaccaagagaacgttgaggtgttctgctatgctttaagtccaaatgatggtacagagtggaggattcgcactcagacagaagctgagcattttattgatgtatcgtccttgacatctgatgtgatagcaaggatgattaatgacgatcaaatacagatacttatcaatctcaatggttataccaagggggcaagaaacgagatattcgccatgcatccagctccaatccaggtttcatacatgggtttccctggaaccacaggagcaacatacatagattatttggttacagatgagttcgtttcacctatgaagtatgcacatatttactcagagaagcttgtacatctccctcattgctattttgacaacgattataagcaaaaaaactgtgacgtgctagatccaaacagccaactgaagcgctcagattatgggctgccggaggataaattcatatttgcatgttttaatcagctttacaagatggatcctgagatttttattacatggtgcaatatccttaagcgtgtaccaaacagtgctctttggcttctcaaatttccagctgccagagagatgaggctccgcgcacatgctgctgcccaaggcctgcaaccaaaccaaattattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="17792" stop="15086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17492" g_stop="17397" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17396" i_stop="17277" i_length="120">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17276" g_stop="17192" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="181" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17099" g_stop="16932" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="349" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16381" g_stop="16271" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="460" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16182" g_stop="16096" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="547" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15817" g_stop="15690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="675" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15606" g_stop="15524" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="758" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.125" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15426" g_stop="15386" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="799" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E731841" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17492" e_stop="17397"/>
          <exon e_start="17276" e_stop="17192"/>
          <exon e_start="17099" e_stop="16932"/>
          <exon e_start="16381" e_stop="16271"/>
          <exon e_start="16182" e_stop="16096"/>
          <exon e_start="15817" e_stop="15690"/>
          <exon e_start="15606" e_stop="15524"/>
          <exon e_start="15426" e_stop="15386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGGGTAAGTTCCATAAGCTGATAAATACTTGCTTGCTTTTCCTCTTGAGGTTCAGATCTGCTGTAAGCTTTTCATGAATATTGCTACATGCTACTTACTAATAAGTTTCTTAAATGTTTTTAGATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAGGTTAAGTTAATTTGTTACTTTTCCTTATCCTTTTTACCATTCACGACTTCACCACTTGTTCATGCTAAATCTCCAAGTACTTCTTTTCCTAGGTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAGGTACAGATTGAGACTCAATCCAGATCAATCCTAATTAGATTTTATATTTTTCTTTTTTTGCTAGTGTTGTTTGTGTGTGCCCAGTCCATGCACAGGGCCCATATGCTAGACCCATTAACATAATGAAAAGAAATGGGATGGAAAAAGTAGTTTCCTTTCTTGGAAATAATCCACAATAAACAAATAAATCAATGATTTCTGTGCCATCTCGGTTAAGCTAAGTTGTGGATATGAATGCAAACTCGAATACTTACCAATGAGAATTTGATCAGCCACGACTGGTTTGAGCAAATGAGTATAATAAGGATATTGCCTAACTAAAGTGCAAACCTGTCAAACAGGTCTCACTGTCTCATGAGGTACACATTTTGTTGGTCCTATATCCTATAATTGTTGTTTTAAGCCAAAAATATGTGTTACATCTTTCACCTTTTTGTAGATGCTGATTAATGTGCCCATATTTTGCTTTGCCTTCTATCCTGAGAGTTATTTTTTGAACGACTTCGTTTATCTAATGTGTCATCTTTGACTTCGGACTTGTGTGTTGCAGGGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAGGTAATTTGCTAATGACACCCTTGATATTACATATTTGCTGTTAACCTTTGCTCTCTATGGGTCCTTGATGCAATTTCCTTGTATGCAGTTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATGGTAGTTACTTGGAATGATTTGAATTGGTCTACTTTTACCCTCACAAGCACTTGCTAAAAAACTTGCTGAGTTGGTATGTGCAGGTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCACGTAAGTATTTTCTTCCATACCATGCATTTCTCTAATCTTCTTTTGTGAGACTTGCTGGTTTATGAAGAGTCTCCTAATTCAGCTCATTTTATTACAGATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTC</genome_strand>
        <mrna_strand>CTCTGTGGTAGCTACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAAGCTGACGGTTGG........................................................................................................................ATATGTGAGCAGCGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACCAAGAGAACGTTGAG............................................................................................GTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGACGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAAGAAACGAGATATTCGCCATGCATCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAG........................................................................................TTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGACAACGATTATAAGCAA......................................................................................................................................................................................................................................................................................AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG...................................................................................GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAAATTTCCAGCTGCCAGAGAGATGAGGCTCCGCGCAC.................................................................................................ATGCTGCTGCCCAAGGCCTGCAACCAAACCAAATTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571273" ref_strand="+" ref_description="SGN-E571273 [12109]">
      <seq>atcagtcgcaagtatgcccagcactgctctgtggtagcaactcgctactcacttcctcctttcacccatccactgccgctgccaattaaaggaggtggcaggatcgacaggctgagggttggatatgtgagcagtgatttcggcaaccacccactatcacatctaatgggttccgtttttgggatgcatgacaaagagaatgttgaggtgttctgctatgccttaagtccaaatgatggtacagagtggaggattcgcactcagacagaagttgagcattttattgatgtatcatccttgacatctgatgtgatagcaaggatgattaatgaggatcaaatacagatacttatcaatctcaatggttataccaagggggcaagaaacgagatatttgccatgcagccagctccaatccaggtttcatacatggggttccctgggaaccacaggggcaacatacatagattatttggttacagatgagttcgtttcacctatgaagtacgcacatatttactcagagaagcttgtacatctccctcattgctattttgtcaacgattataagcaaaaaaactgtgaagtgctagatccaaacagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="17815" stop="15788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17518" g_stop="17397" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17396" i_stop="17277" i_length="120">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17276" g_stop="17192" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="207" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17099" g_stop="16932" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="375" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16381" g_stop="16271" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="487" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16182" g_stop="16096" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="574" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15817" g_stop="15788" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="604" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E571273" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17518" e_stop="17397"/>
          <exon e_start="17276" e_stop="17192"/>
          <exon e_start="17099" e_stop="16932"/>
          <exon e_start="16381" e_stop="16271"/>
          <exon e_start="16182" e_stop="16096"/>
          <exon e_start="15817" e_stop="15788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGGGTAAGTTCCATAAGCTGATAAATACTTGCTTGCTTTTCCTCTTGAGGTTCAGATCTGCTGTAAGCTTTTCATGAATATTGCTACATGCTACTTACTAATAAGTTTCTTAAATGTTTTTAGATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAGGTTAAGTTAATTTGTTACTTTTCCTTATCCTTTTTACCATTCACGACTTCACCACTTGTTCATGCTAAATCTCCAAGTACTTCTTTTCCTAGGTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAGGTACAGATTGAGACTCAATCCAGATCAATCCTAATTAGATTTTATATTTTTCTTTTTTTGCTAGTGTTGTTTGTGTGTGCCCAGTCCATGCACAGGGCCCATATGCTAGACCCATTAACATAATGAAAAGAAATGGGATGGAAAAAGTAGTTTCCTTTCTTGGAAATAATCCACAATAAACAAATAAATCAATGATTTCTGTGCCATCTCGGTTAAGCTAAGTTGTGGATATGAATGCAAACTCGAATACTTACCAATGAGAATTTGATCAGCCACGACTGGTTTGAGCAAATGAGTATAATAAGGATATTGCCTAACTAAAGTGCAAACCTGTCAAACAGGTCTCACTGTCTCATGAGGTACACATTTTGTTGGTCCTATATCCTATAATTGTTGTTTTAAGCCAAAAATATGTGTTACATCTTTCACCTTTTTGTAGATGCTGATTAATGTGCCCATATTTTGCTTTGCCTTCTATCCTGAGAGTTATTTTTTGAACGACTTCGTTTATCTAATGTGTCATCTTTGACTTCGGACTTGTGTGTTGCAGGGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCT-GGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAGGTAATTTGCTAATGACACCCTTGATATTACATATTTGCTGTTAACCTTTGCTCTCTATGGGTCCTTGATGCAATTTCCTTGTATGCAGTTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAAGTAAGTTGCCCGTGATCTTTCTGAGCTGTGTATGAATCTTATTTTAAAATGAATCAATTATGCCTTGAGCCCAAATTCATAGTTGGAGTAGGCTATTTGTATTTTTTTCATCTCTTCTCGCAGTAGGTCATTTGTAGCCAATATTAGATAATATTTAGTTATTTGATCATGAACAAAAATCTTATAAATTTCTTAAAAAAAGATCTGAGGTATGTTGAACTCTTCTGGATTTGTTTATTTTTCACTGCTGATGGGTTTCTTGCTGCTGTTTTTTGTAGAAAAACTGTGACGTGCTAGATCCAAACAGC</genome_strand>
        <mrna_strand>ATCAGTCGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCTTTCACCCATCCACTGCCGCTGCCAATTAAAGGAGGTGGCAGGATCGACAGGCTGAGGGTTGG........................................................................................................................ATATGTGAGCAGTGATTTCGGCAACCACCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAATGTTGAG............................................................................................GTGTTCTGCTATGCCTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGTTGAGCATTTTATTGATGTATCATCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAAGAAACGAGATATTTGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGGTTCCCTGGGAACCACAGGGGCAACATACATAGATTATTTGGTTACAGATGAG........................................................................................TTCGTTTCACCTATGAAGTACGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA......................................................................................................................................................................................................................................................................................AAAAACTGTGAAGTGCTAGATCCAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699498" ref_strand="+" ref_description="SGN-E699498 [FA10BC10]">
      <seq>aggccctataaccgggagaagatgtttattgaagttgaggggatactaagaagacaaattaagatgtccattatcccaagcgttcagcctttccatgcaattgcctaccctcttgatccaatgcttgctctagatatcagttgcaagtatgcccagcactgctctgtggtagcaactcgctactcacttcctcccttcacccatccaccgccgctgccaattaaaggaggtggcaggatcaacaggctgagggttggatatgtgagcagtgattttggcaaccatccactatcacatctaatgggttccgtttttgggatgcatgacaaagagaacgttgaggtgttctgctatgctttaagtccaaatgatggtacagagtggaggattcgcactcacacagaagctgagcattttattgatgtatcgtccttgacatctgatgtgatagcaacgatgattaatgaggatcaaatacagatacttatcaatctcaatggttataccccgggggcaagaaacgacatattcgccatgccaccagctccaatccaagtatcatacatgggtttccctggaaccacaggagcaacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="18133" stop="15995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17840" g_stop="17778" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="17665" i_length="113">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17664" g_stop="17588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="140" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17587" i_stop="17514" i_length="74">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17513" g_stop="17397" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="257" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17396" i_stop="17277" i_length="120">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17276" g_stop="17192" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="342" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17099" g_stop="16932" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="510" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16381" g_stop="16295" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="597" r_length="87" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E699498" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17840" e_stop="17778"/>
          <exon e_start="17664" e_stop="17588"/>
          <exon e_start="17513" e_stop="17397"/>
          <exon e_start="17276" e_stop="17192"/>
          <exon e_start="17099" e_stop="16932"/>
          <exon e_start="16381" e_stop="16295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGGATAACCGGGAGAAGATGTTTATTGAAGTTGAGGGGATACTAAGAAGACAAATTAAGGTATCACAGTTACTCGCCGTACTGTTACATGTTTACTTAGTTGGATATTTTTTCATCCTGCAATACTGATTCTTTTTTTCTTAATGTTGTGCCGTCTCATATTTGTCCTTAAGATGTCCATTATCCCAAGCGTTCAGCCTTTCCATGCAATTGCCTACCCTCTTGATCCAATGCTTGCTCTAGATATCAGGTGCGGAATTTTCTTTTGAATCAATCACAAAAATGATGTGAGGTTGAAGCTGACTGTTTCTTTTGCTTGTAAAGTTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGGGTAAGTTCCATAAGCTGATAAATACTTGCTTGCTTTTCCTCTTGAGGTTCAGATCTGCTGTAAGCTTTTCATGAATATTGCTACATGCTACTTACTAATAAGTTTCTTAAATGTTTTTAGATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAGGTTAAGTTAATTTGTTACTTTTCCTTATCCTTTTTACCATTCACGACTTCACCACTTGTTCATGCTAAATCTCCAAGTACTTCTTTTCCTAGGTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAGGTACAGATTGAGACTCAATCCAGATCAATCCTAATTAGATTTTATATTTTTCTTTTTTTGCTAGTGTTGTTTGTGTGTGCCCAGTCCATGCACAGGGCCCATATGCTAGACCCATTAACATAATGAAAAGAAATGGGATGGAAAAAGTAGTTTCCTTTCTTGGAAATAATCCACAATAAACAAATAAATCAATGATTTCTGTGCCATCTCGGTTAAGCTAAGTTGTGGATATGAATGCAAACTCGAATACTTACCAATGAGAATTTGATCAGCCACGACTGGTTTGAGCAAATGAGTATAATAAGGATATTGCCTAACTAAAGTGCAAACCTGTCAAACAGGTCTCACTGTCTCATGAGGTACACATTTTGTTGGTCCTATATCCTATAATTGTTGTTTTAAGCCAAAAATATGTGTTACATCTTTCACCTTTTTGTAGATGCTGATTAATGTGCCCATATTTTGCTTTGCCTTCTATCCTGAGAGTTATTTTTTGAACGACTTCGTTTATCTAATGTGTCATCTTTGACTTCGGACTTGTGTGTTGCAGGGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATAC</genome_strand>
        <mrna_strand>AGGCCCTATAACCGGGAGAAGATGTTTATTGAAGTTGAGGGGATACTAAGAAGACAAATTAAG.................................................................................................................ATGTCCATTATCCCAAGCGTTCAGCCTTTCCATGCAATTGCCTACCCTCTTGATCCAATGCTTGCTCTAGATATCAG..........................................................................TTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGG........................................................................................................................ATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAG............................................................................................GTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCACACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAACGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAAGAAACGACATATTCGCCATGCCACCAGCTCCAATCCAAGTATCATACATGGGTTTCCCTGGAACCACAGGAGCAACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538224" ref_strand="-" ref_description="SGN-E538224 [TUS-57-E9](-)">
      <seq>caattgcctaccctcttgtccaatgcttgctctagatatcagttgcaagtatgcccagcactgctctgtggtagcaactcgctactcacttcctcccttcacccatccaccgccgctgccaattaaaggaggtggcaggatcaacaggctgagggttggatatgtgagcagcgattttggcaaccatccactatcacatctaatgggttccgtttttgggatgcatgacagagagaacgttgaggtgttctgctatgctttaagtccaaatgatggcacagagtggaggattcgcactcagacagaaactgagcattttattgatagtatcgtccttgacactctgatgtgatagcaaggatgattaatgaggatcaaatacagatacttatcaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="17930" stop="16646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17630" g_stop="17588" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17587" i_stop="17514" i_length="74">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17513" g_stop="17397" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="159" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17396" i_stop="17277" i_length="120">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17276" g_stop="17192" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="244" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17099" g_stop="16946" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="400" r_length="156" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E538224" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538224" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17630" e_stop="17588"/>
          <exon e_start="17513" e_stop="17397"/>
          <exon e_start="17276" e_stop="17192"/>
          <exon e_start="17099" e_stop="16946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCCTACCCTCTTGATCCAATGCTTGCTCTAGATATCAGGTGCGGAATTTTCTTTTGAATCAATCACAAAAATGATGTGAGGTTGAAGCTGACTGTTTCTTTTGCTTGTAAAGTTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGGGTAAGTTCCATAAGCTGATAAATACTTGCTTGCTTTTCCTCTTGAGGTTCAGATCTGCTGTAAGCTTTTCATGAATATTGCTACATGCTACTTACTAATAAGTTTCTTAAATGTTTTTAGATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAGGTTAAGTTAATTTGTTACTTTTCCTTATCCTTTTTACCATTCACGACTTCACCACTTGTTCATGCTAAATCTCCAAGTACTTCTTTTCCTAGGTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGAT-GTATCGTCCTTGACA-TCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCA</genome_strand>
        <mrna_strand>CAATTGCCTACCCTCTTG-TCCAATGCTTGCTCTAGATATCAG..........................................................................TTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGG........................................................................................................................ATATGTGAGCAGCGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAGAGAGAACGTTGAG............................................................................................GTGTTCTGCTATGCTTTAAGTCCAAATGATGGCACAGAGTGGAGGATTCGCACTCAGACAGAAACTGAGCATTTTATTGATAGTATCGTCCTTGACACTCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450452" ref_strand="+" ref_description="SGN-E450452 [cSTS-9-K12]">
      <seq>caaggtttagtccaagaggcatacaattgttatgttgaagcactgcgtataaagcctgcatttgccatagcatggtccaatcttgctggcctttttatggaggcaggcgatcttaacaaggctttgcagtactacaaggaagcgatcaagctgaaaccgaacttctcagatgcatatctgaacctaggaaatgtatacaaggctttgggaatgccccaggaggccatagtgtgttatcagcgtgcgctccaagtacgaccagactatgccatggcttttggcaacttagctagtgtgtactatgaacaaggaaatatggaaatggcaatatttaactacaggagagctattacatgtgatactgaattcttggaggcatataacaatctgggtaatgctctgaaagatgctggtagagtggaggaagcaattcattgctatcgtcaatgcctctctcttcaacctaaccatccgcaagcgcttactaatttggggaacatttatatggagtggaacatgatgagtgctgctgcacaatgttataaagcgactttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="21225" stop="18709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20925" g_stop="20908" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20907" i_stop="20211" i_length="697">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20210" g_stop="20091" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="138" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20090" i_stop="19988" i_length="103">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19987" g_stop="19925" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="201" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19924" i_stop="19830" i_length="95">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19829" g_stop="19751" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="280" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19750" i_stop="19554" i_length="197">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19553" g_stop="19444" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="390" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19443" i_stop="19348" i_length="96">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19347" g_stop="19294" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="444" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19293" i_stop="19205" i_length="89">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19204" g_stop="19137" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="512" r_length="68" r_score="0.897"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19136" i_stop="19055" i_length="82">
            <donor d_prob="0.644" d_score="0.86"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19054" g_stop="19009" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="558" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E450452" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20925" e_stop="20908"/>
          <exon e_start="20210" e_stop="20091"/>
          <exon e_start="19987" e_stop="19925"/>
          <exon e_start="19829" e_stop="19751"/>
          <exon e_start="19553" e_stop="19444"/>
          <exon e_start="19347" e_stop="19294"/>
          <exon e_start="19204" e_stop="19137"/>
          <exon e_start="19054" e_stop="19009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTTAGTCCAAGAGGTAAAGGAGAGAGGACTCAGATCCACTTTGTGTTCTAATATATTGGTGACTTGAGATTGGCTATTCATGTTCACATCTGCCTTTAGGATGGTTTTGGGGGTGGGGGACTATTCTTCAACACGCACATAGTGTGCCCATAGTACATGTGTTTGTGCATCGTATGTGGGCCAGCATTGTTCTTTCATTCCAGGCATCCACTCACTTTGTGCAGCTTGAAAATTCTCCGTGATTATTTGTTGACTATTGATGTATCTATGTTGATTCTCCCTCATCGCTTGTGGAGGATCGTTTGGTATCCTTATTTGTCTTGGGAAATCCTCCCCCATGAGCTAGTTTTTGGGGTTGAGTTAGGCTCAAGATCCATTTCTTATCATGGTATTAGAGTCAGTCCCATCCCAATTCATTGTTTACTGTATGTTGGGCTCTATCTTGTATTGTCCATGCTCCAGATTTCTGGACTCTTCGCTCTTGGGCATGCAGGGCGTGTTGATTCTCTCACATCGGTTGTGCGTGGGTGTTTGGTCTCCTTATATAGTCTTGGGAAATCCTCCTCATGAGCTAGCATTTGGGGCTGAGTTAGACCCAAGATCCATTTAATATCAGTTGTTATGCTTTTGAGTTTCTTTTTGCACTTTCCTCTTGATAGATATATGCCATTACTTTTCACCTCTGAGTATTTCTTTTTTCCTTTTGGTAGGCGTACAATTGTTATGTTGAAGCACTGCGTATACAGCCTGCATTTGCCATAGCATGGTCCAACCTTGCTGGCCTTTTCATGGAGGCAGGCGATCTTAACAGGGCTTTGCAGTACTACAAGGTATGAGTAAGGCGTAATTGGAATTTACTGATCAAGTGTTGGATGTGTTTTTCAGCTGAATGTTATCATGTTTGATGCCCCTTTGTGGTTTAATCCCCTCCAGGAAGTGATCAAGCTGAAACCGAACTTCTCAGATGCATATCTGAACCTAGGAAATGTATACAAGGTAAGCTGTCATGCATTGTGCTAATTGCGTCTGGTGGCTCCAAGTGCCTAGACGAGAATATGGAGAAATACAAGCATCTTCTTTGCATTTTCCAGGCTTTGGGAATGCCCCAGGAGGCCATAGTGTGTTATCAGCGTGCGCTCCAAGTACGACCAGACTATGCCATGGCTTTTGGTGAGCGACTATTTTCAGTCATGCCTTTAATTCAGTGCATAATGCAATAAGTCGCTGGGAGAGTCTTTTTGATATCACTTCTATACTTAGAGATGATTGTATATGATTTTTATTGCAATACGAAGACATGAGTCTTCATCTTCAGTGTGGCTAGGCCACCCTAATAATGCATTCACACGTGAATCTCCTTTCTGCAGGCAACTTAGCTAGTGTGTACTATGAACAAGGAAATATGGAAATGGCAATATTTAACTACAGGAGAGCTATTACATGTGATACTGAATTCTTTGAGGCATATAACAATCTGGTTGGTACTTTCTTTCATCTTTGTTTATAAAATTCCCATCTTAAATTTACTATTTATTTCGATAGTAATGCTATCTTTTCTCCAATTTTTTTATAGGGTAATGCTCTAAAAGATGCTGGTAGAGTGGAGGAAGCAATTCATTGCTATCGTGTAAGCTGAGTTCCCTTGTTTGTTTGACGGTTCCTTTGTTTGATGTTGCTTTTGTGCTGTTTTCTTAACTCATCTGATGATGCATGCAGCAATGCCTCTCTCTTCAACCTAACCACCCACAAGCGCTTTCTAATATAGGGATCATTTATATGCAGTGGTAAAGTTAACTTAGTCGTGAAGATTCTCTTCTTAACGCTTTCAATCAAGTAATTTTCATGAGTTGCTTTCCTGTTCTCTAGGAACATGATGAGTGCGGCTGCACAATGTTTTAAAGCGACTTTAGCT</genome_strand>
        <mrna_strand>CAAGGTTTAGTCCAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACAATTGTTATGTTGAAGCACTGCGTATAAAGCCTGCATTTGCCATAGCATGGTCCAATCTTGCTGGCCTTTTTATGGAGGCAGGCGATCTTAACAAGGCTTTGCAGTACTACAAG.......................................................................................................GAAGCGATCAAGCTGAAACCGAACTTCTCAGATGCATATCTGAACCTAGGAAATGTATACAAG...............................................................................................GCTTTGGGAATGCCCCAGGAGGCCATAGTGTGTTATCAGCGTGCGCTCCAAGTACGACCAGACTATGCCATGGCTTTTG.....................................................................................................................................................................................................GCAACTTAGCTAGTGTGTACTATGAACAAGGAAATATGGAAATGGCAATATTTAACTACAGGAGAGCTATTACATGTGATACTGAATTCTTGGAGGCATATAACAATCTG................................................................................................GGTAATGCTCTGAAAGATGCTGGTAGAGTGGAGGAAGCAATTCATTGCTATCGT.........................................................................................CAATGCCTCTCTCTTCAACCTAACCATCCGCAAGCGCTTACTAATTTGGGGAACATTTATATGGAGTG..................................................................................GAACATGATGAGTGCTGCTGCACAATGTTATAAAGCGACTTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423435" ref_strand="+" ref_description="SGN-E423435 [STM-42-E1]">
      <seq>caaggtttagtccaagaggcatacaattgttatgttgaagcactgcgtataaagcctgcatttgccatagcatggtccaatcttgctggcctttttatggaggcaggcgatcttaacaaggctttgcagtactacaaggaagcgatcaagctgaaaccgaacttctcagatgcatatctgaacctaggaaatgtatacaaggctttgggaatgccccaggaggccatagtgtgttatcagcgtgcgctccaagtacgaccagactatgccatggcttttggcaacttagctagtgtgtactatgaacaaggaaatatggaaatggcaatatttaactacaggagagctattacatgtgatactgaattcttggaggcatataacaatctgggtaatgctctgaaagatgctggtagagtggaggaagcaattcattgctatcgtcaatgcctctctcttcancctaaccatcccgcagcgcttactaatttggggaacatttatatggagtggaacatgatgagtgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="21225" stop="18735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20925" g_stop="20908" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20907" i_stop="20211" i_length="697">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20210" g_stop="20091" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="138" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20090" i_stop="19988" i_length="103">
            <donor d_prob="0.933" d_score="0.96"/>
            <acceptor a_prob="0.731" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19987" g_stop="19925" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="201" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19924" i_stop="19830" i_length="95">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19829" g_stop="19751" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="280" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19750" i_stop="19554" i_length="197">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19553" g_stop="19444" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="390" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19443" i_stop="19348" i_length="96">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19347" g_stop="19294" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="444" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19293" i_stop="19205" i_length="89">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19204" g_stop="19137" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="512" r_length="68" r_score="0.853"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19136" i_stop="19055" i_length="82">
            <donor d_prob="0.644" d_score="0.82"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19054" g_stop="19035" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="532" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E423435" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20925" e_stop="20908"/>
          <exon e_start="20210" e_stop="20091"/>
          <exon e_start="19987" e_stop="19925"/>
          <exon e_start="19829" e_stop="19751"/>
          <exon e_start="19553" e_stop="19444"/>
          <exon e_start="19347" e_stop="19294"/>
          <exon e_start="19204" e_stop="19137"/>
          <exon e_start="19054" e_stop="19035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTTAGTCCAAGAGGTAAAGGAGAGAGGACTCAGATCCACTTTGTGTTCTAATATATTGGTGACTTGAGATTGGCTATTCATGTTCACATCTGCCTTTAGGATGGTTTTGGGGGTGGGGGACTATTCTTCAACACGCACATAGTGTGCCCATAGTACATGTGTTTGTGCATCGTATGTGGGCCAGCATTGTTCTTTCATTCCAGGCATCCACTCACTTTGTGCAGCTTGAAAATTCTCCGTGATTATTTGTTGACTATTGATGTATCTATGTTGATTCTCCCTCATCGCTTGTGGAGGATCGTTTGGTATCCTTATTTGTCTTGGGAAATCCTCCCCCATGAGCTAGTTTTTGGGGTTGAGTTAGGCTCAAGATCCATTTCTTATCATGGTATTAGAGTCAGTCCCATCCCAATTCATTGTTTACTGTATGTTGGGCTCTATCTTGTATTGTCCATGCTCCAGATTTCTGGACTCTTCGCTCTTGGGCATGCAGGGCGTGTTGATTCTCTCACATCGGTTGTGCGTGGGTGTTTGGTCTCCTTATATAGTCTTGGGAAATCCTCCTCATGAGCTAGCATTTGGGGCTGAGTTAGACCCAAGATCCATTTAATATCAGTTGTTATGCTTTTGAGTTTCTTTTTGCACTTTCCTCTTGATAGATATATGCCATTACTTTTCACCTCTGAGTATTTCTTTTTTCCTTTTGGTAGGCGTACAATTGTTATGTTGAAGCACTGCGTATACAGCCTGCATTTGCCATAGCATGGTCCAACCTTGCTGGCCTTTTCATGGAGGCAGGCGATCTTAACAGGGCTTTGCAGTACTACAAGGTATGAGTAAGGCGTAATTGGAATTTACTGATCAAGTGTTGGATGTGTTTTTCAGCTGAATGTTATCATGTTTGATGCCCCTTTGTGGTTTAATCCCCTCCAGGAAGTGATCAAGCTGAAACCGAACTTCTCAGATGCATATCTGAACCTAGGAAATGTATACAAGGTAAGCTGTCATGCATTGTGCTAATTGCGTCTGGTGGCTCCAAGTGCCTAGACGAGAATATGGAGAAATACAAGCATCTTCTTTGCATTTTCCAGGCTTTGGGAATGCCCCAGGAGGCCATAGTGTGTTATCAGCGTGCGCTCCAAGTACGACCAGACTATGCCATGGCTTTTGGTGAGCGACTATTTTCAGTCATGCCTTTAATTCAGTGCATAATGCAATAAGTCGCTGGGAGAGTCTTTTTGATATCACTTCTATACTTAGAGATGATTGTATATGATTTTTATTGCAATACGAAGACATGAGTCTTCATCTTCAGTGTGGCTAGGCCACCCTAATAATGCATTCACACGTGAATCTCCTTTCTGCAGGCAACTTAGCTAGTGTGTACTATGAACAAGGAAATATGGAAATGGCAATATTTAACTACAGGAGAGCTATTACATGTGATACTGAATTCTTTGAGGCATATAACAATCTGGTTGGTACTTTCTTTCATCTTTGTTTATAAAATTCCCATCTTAAATTTACTATTTATTTCGATAGTAATGCTATCTTTTCTCCAATTTTTTTATAGGGTAATGCTCTAAAAGATGCTGGTAGAGTGGAGGAAGCAATTCATTGCTATCGTGTAAGCTGAGTTCCCTTGTTTGTTTGACGGTTCCTTTGTTTGATGTTGCTTTTGTGCTGTTTTCTTAACTCATCTGATGATGCATGCAGCAATGCCTCTCTCTTCAACCTAACCACCCACAAGCGCTTTCTAATATAGGGATCATTTATATGCAGTGGTAAAGTTAACTTAGTCGTGAAGATTCTCTTCTTAACGCTTTCAATCAAGTAATTTTCATGAGTTGCTTTCCTGTTCTCTAGGAACATGATGAGTGCGGCTG</genome_strand>
        <mrna_strand>CAAGGTTTAGTCCAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACAATTGTTATGTTGAAGCACTGCGTATAAAGCCTGCATTTGCCATAGCATGGTCCAATCTTGCTGGCCTTTTTATGGAGGCAGGCGATCTTAACAAGGCTTTGCAGTACTACAAG.......................................................................................................GAAGCGATCAAGCTGAAACCGAACTTCTCAGATGCATATCTGAACCTAGGAAATGTATACAAG...............................................................................................GCTTTGGGAATGCCCCAGGAGGCCATAGTGTGTTATCAGCGTGCGCTCCAAGTACGACCAGACTATGCCATGGCTTTTG.....................................................................................................................................................................................................GCAACTTAGCTAGTGTGTACTATGAACAAGGAAATATGGAAATGGCAATATTTAACTACAGGAGAGCTATTACATGTGATACTGAATTCTTGGAGGCATATAACAATCTG................................................................................................GGTAATGCTCTGAAAGATGCTGGTAGAGTGGAGGAAGCAATTCATTGCTATCGT.........................................................................................CAATGCCTCTCTCTTCANCCTAACCATCCCGCAGCGCTTACTAATTTGGGGAACATTTATATGGAGTG..................................................................................GAACATGATGAGTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367458" ref_strand="+" ref_description="SGN-E367458 [cLPT-7-A5]">
      <seq>tgattttgatatgtgtatcgcaaaaaatgaagaagccctaagtatcgagccacattttgctgagtgctatggaaatatggcgaatgcttggaaggtatggttgtactaactcagtaactcatctagaagctgcttcttctggttttggaattgggcactgatgaagatctaatggtgcaggaaaaaggcaatattgatgttgcaatacgctattatttaattgcaattgaggtttgtcactcagcctcatgctttcagaatgagtcacctggaaagaacttttgaggacttctggaattttggaagctcgcttaattatctgtctggctgttcaattaaagttgtgtcatcctgtggtttttttaatgatattttaattataaccatatatatgggttgccgaagacttcaaattggagtaatatcacagagaatagatgagaatagttcagatccaaggcatttttccagttcagatctgaattattaaagcggatattgaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="-" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="22816" stop="21711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22516" g_stop="22011" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="-" ref_id="SGN-E367458" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22516" e_stop="22011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGATATGTGTATCGCAAAAAATGAAGAAGCCCTAAGTATCGAGCCACATTTTGCTGAGTGCTATGGAAATATGGCGAATGCTTGGAAGGTATGGTTGTACTAACTCAGTAACTCATCTAGAAGCTGCTTCTTCTGGTTTTGGAATTGGGCACTGATGAAGTTCTAATGGTGCAGGAAAAAGGCAATATTGATGTTGCAATACGCTATTATTTAATTGCAATTGAGGTTTGTCACTCAGCCTCTTGCTTTCAGAATGAGTCACCTGGAAAGAACTTTTGAGGACTTCTGGAATTTTGGAAGCTTGCTTAATTATCTGTCTGGCTGTTCAATTAAAGTTGTGTCGTCCTGTGGTTTTTTTAATGATATTTTAATTATAACCATATATATGGGTTGCTGAAGACTTCAAATTGGAGTAATATCACAGAGAATAGATGAG-ATAGTTCAGATCCAAGGCATTTTTCCAGTTCAGATCTGAATTATTAAAGCGGATATTGAAACTG</genome_strand>
        <mrna_strand>TGATTTTGATATGTGTATCGCAAAAAATGAAGAAGCCCTAAGTATCGAGCCACATTTTGCTGAGTGCTATGGAAATATGGCGAATGCTTGGAAGGTATGGTTGTACTAACTCAGTAACTCATCTAGAAGCTGCTTCTTCTGGTTTTGGAATTGGGCACTGATGAAGATCTAATGGTGCAGGAAAAAGGCAATATTGATGTTGCAATACGCTATTATTTAATTGCAATTGAGGTTTGTCACTCAGCCTCATGCTTTCAGAATGAGTCACCTGGAAAGAACTTTTGAGGACTTCTGGAATTTTGGAAGCTCGCTTAATTATCTGTCTGGCTGTTCAATTAAAGTTGTGTCATCCTGTGGTTTTTTTAATGATATTTTAATTATAACCATATATATGGGTTGCCGAAGACTTCAAATTGGAGTAATATCACAGAGAATAGATGAGAATAGTTCAGATCCAAGGCATTTTTCCAGTTCAGATCTGAATTATTAAAGCGGATATTGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334411" ref_strand="+" ref_description="SGN-E334411 [cTOD-21-P10]">
      <seq>ttcttcttcttcagtctgaataattacagtagcaatcaagctttaatactacaaaaatgtcacaattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggtggtgttcttctctatgctacatcttcctcctcttcctctggatttgggtatgggagttttgagaagcaaaggcagaggttgcctgtgtataagtacaaaactgctattctttactcagtggagactcatgctactaccatcattgttggagaaactggaagtggaaaaacaactcaaattcctcagtacctgaaagaagctggttgggctgagggagggcgaatgattgcttgtacccaaccaaggagattggcagtccaggcagttgctacaagagttgctgaagaaatggatgttaaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaattaactagggtcaaatttcttactgatggggttttgctgagggaaatgatggatgatcctctattgagcaagtatagtgtgattatggtagatgaagctcatgaaaggtctctctcgacggacatcttattgggactactgaaaaagattcaaaagcgtcggcctgagctgcgtattataatatcatcagctacgattgaagcaaaatcaatgggctggctttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="31706" stop="35706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32006" g_stop="32162" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32241" g_stop="32385" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="302" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33314" g_stop="33388" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="377" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34087" g_stop="34176" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="467" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34474" g_stop="34553" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="547" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34554" i_stop="35145" i_length="592">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35146" g_stop="35215" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="617" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35330" g_stop="35407" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="697" r_length="80" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E334411" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32006" e_stop="32162"/>
          <exon e_start="32241" e_stop="32385"/>
          <exon e_start="33314" e_stop="33388"/>
          <exon e_start="34087" e_stop="34176"/>
          <exon e_start="34474" e_stop="34553"/>
          <exon e_start="35146" e_stop="35215"/>
          <exon e_start="35330" e_stop="35407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCAGTCTGAATAATTACAGTAGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGGGTAACCTTTTTTTTTCTATAATTTTTTTTATTTTTTTTGTATATGTTGTTATTTATGTAGTATTTGTGTGATTTCAAGATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAGGTTGTTTTTCTCTATTTTCTGTAAAGTTCATGTTTTTGATTTAGTATGATGTGAAATGTCCTCCTTGGAGTAATATTTGACAGTTTTGAACTTGTTGGGGTTGGCTATATGAATTCTCAGACCTCAGTATCTGTTGTGATTTAGTATTTAGGTATTCAACATAGTTAGACCATGAACTGTCTTCCATTAACCAGAACTGTGGTGGAGCCATGACTTCATTAAGGGAATTCAAAATATAAAGGAGAAAACTCACGAAGAAGCGATGAGAATTCAGCATATAATATATAATAGTATTAAGTATATACACAGGTGTGCAGGGGAAAAAGATTGACCTATATATGCAGTGTAGGTGTCAGTTGACACGCCTTGGACAAAGGTGACTCTGGCACAATTTAAAAGGGGATTCAAAAATATGCCTGAATGCATCTTCGTCACTGCAACTTCACTTATATCAAGGGGATTCTAAAACTTATATACAAAAAGATTTATGTTTTAACCTTTTTACACAGTATAGTTTTCAGACGGACTTCCTTATTTGTGTTTTTGGGGGGAGGGGGAGTTATGCAGCATGTGAGGTGGTATCAGTAATAATTTTGAGTTGCAAAGAGTGGAAGTATGTCTTATGTTTGTAGGAGCAAGAGATATATAGTGGGAAAAAATTGCTTAGCCTCATAATGGCAGTGAATTGTTTCTCCATAATTTGGTTTAAAATTCTTCAATAGTTTTGGCAACCAAACATCAGAAATATTTACAGAACAATCATTTTTTCTGCTAAACATATTACTGTCAAGTGGAACCATAGATATTGTATCTTTGTTATTTGTCTAAAACATGTGAATGAACATATTGTTTTAGTTTGGTTAACAAAATAAACTCTTTTAGAAACTTGAAAAGTTTAATGGTATTTGATACATTTTAATGTGCGCAGTACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAGGTGTAGTATTCTGTTACTGAGCTCTATATGCTCTTTAATAAGTGAACTTTTGTGTCTTATATGTTTGTCTTGATATCTCATTCTAATCGAGAGTAGATGCAAGCCATATGGCTGCTTGTGAGGGACAAATATATTTGTATTTGTAACTTTATTTATGAGACTCTCCTGGATACTTGTATTTACAATCAACGTAGTTACTCTTCTGTTTTGGTTAAGAAAGTGAAAATCGCTACTATTGACATCTAGTTGGCCCAAACATATTGTTAGGGTGGATTATAATCCCACATTGATTGGTGGTTTGCTTGTATGGATTTGGGCAATCCTCCCCTCTTGAGTTAGCTTTTGGGGTTGAGTTAGGTCTAGATGTCATATCTTTATATGGTATCACTGTTAGGTTCATCCCCGTTTGGGCTCCAGGTCCATGCTTTAGTTTGGTCTGGGCGTGAAGAGTGTGCGTGTGTGTTGGACCCAAATTGGTTGAGTAATGTACTGGTGGTTTGCTTATGTGGATTTGGACAATCCTTTCCCTCTTGAGCTAGCTTTTGGGTGTTGAATTAGACCCATGTGTCATATCTTTCCACATATGATATTGAGGATCAATGCAAACATCCTGCTCATAATCTTTTTGAACCATAATATCTCTTATGGTTCAGTTATTTTGAAACACATCTTTCAAGTCTCAATCTTTTATATTGTAGGCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAGGTGGAGCTCTTTCTTTGTACTTGCATTTTTTTTTGGGATAATGGAAATAATTTTTTGCTTCATGATCATTTTTTTAGAGTTCATACTTCATAAGTCCTTAAAAGAACAAATAAATCTTTTGACATCTGCTGGGATTGCATATTTCAAGGTGTTAGTTCCTGTAATGTTCTAGGAAAGAGATTAAGTTTAGTTTGGCATTTATATGTGCCTATGTTAACCTGAAATAGCTTTTTCCTTTTTTTTTTTGGATAAAATATGTTGACCTGGAACAGTAATGGTGGTGTTCTTTCACTACAGGAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAGGTACTGTTTATGCTTTTTATGCCTTGAAAGGGTTCGAGTGCCTCCTTTTCTATCTTCTTCATCATGTAGTGCTGCTTTAGTTCTATTACTTACACCCTCGTTCTTGACTTTTAAGCTTCATGGAGTCTAAGTGTCAATCATTTCAATACTATTAGAATATTGTGTTTGGTAGATAAGACTGAAATAATAATCTAACTTTTTAAAAGTGGAGATTTATGTGTTGTCTAATCTAATAATCAATGTTTAAGCTTCACAATGCACATGATGGGCTGAGCTTAGAATTCCGCTAGCACTTGGATGTTTAATTTGTTTCTTTTCTTTGTCAAACTCAACACTGAATTGTGAGTAGCATTTCTTTAGAAACCGAGCTTGTAAAATTGGGGAAGAAGTATAGAGTCACAGGGAAATATAAAGAAAAAAAATTCACTTATTTGTCCTGAATGCTGTCTTAACTTTGAATTAGGGTGATTTCTTTCCCAAAAACTCAGACGTGCTTATGAAATATAATCCACTTTCTACTTCTAGCTGATACTGAAAATGTCTACTGGAAGGTGAAAATTGTGTACTCTGATTTGTCTTTATAATCATACAGTGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAGGTTGATCAGGAAGTACTCTAGACTGGTTATACGTATTTTCTTATCGTTTGAGTGCACTAAGTTTAGTTCTGGTCTCTAAAAATGTTATTGTTCCTATGGCTTCTGGAAATTTAGATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAAT-GGCT-GCTTTCTTT</genome_strand>
        <mrna_strand>TTCTTCTTCTTCAGTCTGAATAATTACAGTAGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG..............................................................................ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG.........................................................................................................................................................................................................................................................................................................GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAG..................................................................................................................ATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGGCTGGCTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334207" ref_strand="+" ref_description="SGN-E334207 [cTOD-21-P11]">
      <seq>ttcttcttcttcagtctgaataattacagtagcaatcaagctttaatactacaaaaatgtcacaattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggtggtgttcttctctatgctacatcttcctcctcttcctctggatttgggtatgggagttttgagaagcaaaggcagaggttgcctgtgtataagtacaaaactgctattctttactcagtggagactcatgctactaccatcattgttggagaaactggaagtggaaaaacaactcaaattcctcagtacctgaaagaagctggttgggctgagggagggcgaatgattgcttgtacccaaccaaggagattggcagtccaggcagttgctacaagagttgctgaagaaatggatgttaaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaattaactagggtcaaatttcttactgatggggttttgctgagggaaatgatggatgatcctctattgagcaagtatagtgtgattatggtagatgaagctcatgaaaggtctctctcgacggacatcttattgggactactgaaaaagattcaaaagcgtcggcctgagctgcgtattataatatcatcagctacgattgaagcaaaatcatggctgctttctttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="31706" stop="35711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32006" g_stop="32162" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32241" g_stop="32385" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="302" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33314" g_stop="33388" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="377" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34087" g_stop="34176" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="467" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34474" g_stop="34553" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="547" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34554" i_stop="35145" i_length="592">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35146" g_stop="35215" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="617" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35330" g_stop="35407" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="694" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E334207" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32006" e_stop="32162"/>
          <exon e_start="32241" e_stop="32385"/>
          <exon e_start="33314" e_stop="33388"/>
          <exon e_start="34087" e_stop="34176"/>
          <exon e_start="34474" e_stop="34553"/>
          <exon e_start="35146" e_stop="35215"/>
          <exon e_start="35330" e_stop="35407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCAGTCTGAATAATTACAGTAGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGGGTAACCTTTTTTTTTCTATAATTTTTTTTATTTTTTTTGTATATGTTGTTATTTATGTAGTATTTGTGTGATTTCAAGATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAGGTTGTTTTTCTCTATTTTCTGTAAAGTTCATGTTTTTGATTTAGTATGATGTGAAATGTCCTCCTTGGAGTAATATTTGACAGTTTTGAACTTGTTGGGGTTGGCTATATGAATTCTCAGACCTCAGTATCTGTTGTGATTTAGTATTTAGGTATTCAACATAGTTAGACCATGAACTGTCTTCCATTAACCAGAACTGTGGTGGAGCCATGACTTCATTAAGGGAATTCAAAATATAAAGGAGAAAACTCACGAAGAAGCGATGAGAATTCAGCATATAATATATAATAGTATTAAGTATATACACAGGTGTGCAGGGGAAAAAGATTGACCTATATATGCAGTGTAGGTGTCAGTTGACACGCCTTGGACAAAGGTGACTCTGGCACAATTTAAAAGGGGATTCAAAAATATGCCTGAATGCATCTTCGTCACTGCAACTTCACTTATATCAAGGGGATTCTAAAACTTATATACAAAAAGATTTATGTTTTAACCTTTTTACACAGTATAGTTTTCAGACGGACTTCCTTATTTGTGTTTTTGGGGGGAGGGGGAGTTATGCAGCATGTGAGGTGGTATCAGTAATAATTTTGAGTTGCAAAGAGTGGAAGTATGTCTTATGTTTGTAGGAGCAAGAGATATATAGTGGGAAAAAATTGCTTAGCCTCATAATGGCAGTGAATTGTTTCTCCATAATTTGGTTTAAAATTCTTCAATAGTTTTGGCAACCAAACATCAGAAATATTTACAGAACAATCATTTTTTCTGCTAAACATATTACTGTCAAGTGGAACCATAGATATTGTATCTTTGTTATTTGTCTAAAACATGTGAATGAACATATTGTTTTAGTTTGGTTAACAAAATAAACTCTTTTAGAAACTTGAAAAGTTTAATGGTATTTGATACATTTTAATGTGCGCAGTACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAGGTGTAGTATTCTGTTACTGAGCTCTATATGCTCTTTAATAAGTGAACTTTTGTGTCTTATATGTTTGTCTTGATATCTCATTCTAATCGAGAGTAGATGCAAGCCATATGGCTGCTTGTGAGGGACAAATATATTTGTATTTGTAACTTTATTTATGAGACTCTCCTGGATACTTGTATTTACAATCAACGTAGTTACTCTTCTGTTTTGGTTAAGAAAGTGAAAATCGCTACTATTGACATCTAGTTGGCCCAAACATATTGTTAGGGTGGATTATAATCCCACATTGATTGGTGGTTTGCTTGTATGGATTTGGGCAATCCTCCCCTCTTGAGTTAGCTTTTGGGGTTGAGTTAGGTCTAGATGTCATATCTTTATATGGTATCACTGTTAGGTTCATCCCCGTTTGGGCTCCAGGTCCATGCTTTAGTTTGGTCTGGGCGTGAAGAGTGTGCGTGTGTGTTGGACCCAAATTGGTTGAGTAATGTACTGGTGGTTTGCTTATGTGGATTTGGACAATCCTTTCCCTCTTGAGCTAGCTTTTGGGTGTTGAATTAGACCCATGTGTCATATCTTTCCACATATGATATTGAGGATCAATGCAAACATCCTGCTCATAATCTTTTTGAACCATAATATCTCTTATGGTTCAGTTATTTTGAAACACATCTTTCAAGTCTCAATCTTTTATATTGTAGGCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAGGTGGAGCTCTTTCTTTGTACTTGCATTTTTTTTTGGGATAATGGAAATAATTTTTTGCTTCATGATCATTTTTTTAGAGTTCATACTTCATAAGTCCTTAAAAGAACAAATAAATCTTTTGACATCTGCTGGGATTGCATATTTCAAGGTGTTAGTTCCTGTAATGTTCTAGGAAAGAGATTAAGTTTAGTTTGGCATTTATATGTGCCTATGTTAACCTGAAATAGCTTTTTCCTTTTTTTTTTTGGATAAAATATGTTGACCTGGAACAGTAATGGTGGTGTTCTTTCACTACAGGAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAGGTACTGTTTATGCTTTTTATGCCTTGAAAGGGTTCGAGTGCCTCCTTTTCTATCTTCTTCATCATGTAGTGCTGCTTTAGTTCTATTACTTACACCCTCGTTCTTGACTTTTAAGCTTCATGGAGTCTAAGTGTCAATCATTTCAATACTATTAGAATATTGTGTTTGGTAGATAAGACTGAAATAATAATCTAACTTTTTAAAAGTGGAGATTTATGTGTTGTCTAATCTAATAATCAATGTTTAAGCTTCACAATGCACATGATGGGCTGAGCTTAGAATTCCGCTAGCACTTGGATGTTTAATTTGTTTCTTTTCTTTGTCAAACTCAACACTGAATTGTGAGTAGCATTTCTTTAGAAACCGAGCTTGTAAAATTGGGGAAGAAGTATAGAGTCACAGGGAAATATAAAGAAAAAAAATTCACTTATTTGTCCTGAATGCTGTCTTAACTTTGAATTAGGGTGATTTCTTTCCCAAAAACTCAGACGTGCTTATGAAATATAATCCACTTTCTACTTCTAGCTGATACTGAAAATGTCTACTGGAAGGTGAAAATTGTGTACTCTGATTTGTCTTTATAATCATACAGTGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAGGTTGATCAGGAAGTACTCTAGACTGGTTATACGTATTTTCTTATCGTTTGAGTGCACTAAGTTTAGTTCTGGTCTCTAAAAATGTTATTGTTCCTATGGCTTCTGGAAATTTAGATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTT</genome_strand>
        <mrna_strand>TTCTTCTTCTTCAGTCTGAATAATTACAGTAGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG..............................................................................ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG.........................................................................................................................................................................................................................................................................................................GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAG..................................................................................................................ATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATC-ATGGCTGCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313105" ref_strand="+" ref_description="SGN-E313105 [cTOA-14-J8]">
      <seq>agcaatcaagctttaatactacaaaaatgtcacaattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggtggtgttcttctctatgctacatcttcctcctcttcctctggatttgggtatgggagttttgagaagcaaaggcagaggttgcctgtgtataagtacaaaactgctattctttactcagtggagactcatgctactaccatcattgttggagaaactggaagtggaaaaacaactcaaattcctcagtacctgaaagaagctggttgggctgagggagggcgaatgattgcttgtacccaaccaaggagattggcagtccaggcagttgctacaagagttgctgaagaaatggatgttaaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaattaactagggtcaaatttcttactgatggggttttgctgagggaaatgatggatgatcctctattgagcaagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="31736" stop="34852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32036" g_stop="32162" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32241" g_stop="32385" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="272" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33314" g_stop="33388" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="347" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34087" g_stop="34176" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="437" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34474" g_stop="34552" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="516" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E313105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32036" e_stop="32162"/>
          <exon e_start="32241" e_stop="32385"/>
          <exon e_start="33314" e_stop="33388"/>
          <exon e_start="34087" e_stop="34176"/>
          <exon e_start="34474" e_stop="34552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGGGTAACCTTTTTTTTTCTATAATTTTTTTTATTTTTTTTGTATATGTTGTTATTTATGTAGTATTTGTGTGATTTCAAGATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAGGTTGTTTTTCTCTATTTTCTGTAAAGTTCATGTTTTTGATTTAGTATGATGTGAAATGTCCTCCTTGGAGTAATATTTGACAGTTTTGAACTTGTTGGGGTTGGCTATATGAATTCTCAGACCTCAGTATCTGTTGTGATTTAGTATTTAGGTATTCAACATAGTTAGACCATGAACTGTCTTCCATTAACCAGAACTGTGGTGGAGCCATGACTTCATTAAGGGAATTCAAAATATAAAGGAGAAAACTCACGAAGAAGCGATGAGAATTCAGCATATAATATATAATAGTATTAAGTATATACACAGGTGTGCAGGGGAAAAAGATTGACCTATATATGCAGTGTAGGTGTCAGTTGACACGCCTTGGACAAAGGTGACTCTGGCACAATTTAAAAGGGGATTCAAAAATATGCCTGAATGCATCTTCGTCACTGCAACTTCACTTATATCAAGGGGATTCTAAAACTTATATACAAAAAGATTTATGTTTTAACCTTTTTACACAGTATAGTTTTCAGACGGACTTCCTTATTTGTGTTTTTGGGGGGAGGGGGAGTTATGCAGCATGTGAGGTGGTATCAGTAATAATTTTGAGTTGCAAAGAGTGGAAGTATGTCTTATGTTTGTAGGAGCAAGAGATATATAGTGGGAAAAAATTGCTTAGCCTCATAATGGCAGTGAATTGTTTCTCCATAATTTGGTTTAAAATTCTTCAATAGTTTTGGCAACCAAACATCAGAAATATTTACAGAACAATCATTTTTTCTGCTAAACATATTACTGTCAAGTGGAACCATAGATATTGTATCTTTGTTATTTGTCTAAAACATGTGAATGAACATATTGTTTTAGTTTGGTTAACAAAATAAACTCTTTTAGAAACTTGAAAAGTTTAATGGTATTTGATACATTTTAATGTGCGCAGTACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAGGTGTAGTATTCTGTTACTGAGCTCTATATGCTCTTTAATAAGTGAACTTTTGTGTCTTATATGTTTGTCTTGATATCTCATTCTAATCGAGAGTAGATGCAAGCCATATGGCTGCTTGTGAGGGACAAATATATTTGTATTTGTAACTTTATTTATGAGACTCTCCTGGATACTTGTATTTACAATCAACGTAGTTACTCTTCTGTTTTGGTTAAGAAAGTGAAAATCGCTACTATTGACATCTAGTTGGCCCAAACATATTGTTAGGGTGGATTATAATCCCACATTGATTGGTGGTTTGCTTGTATGGATTTGGGCAATCCTCCCCTCTTGAGTTAGCTTTTGGGGTTGAGTTAGGTCTAGATGTCATATCTTTATATGGTATCACTGTTAGGTTCATCCCCGTTTGGGCTCCAGGTCCATGCTTTAGTTTGGTCTGGGCGTGAAGAGTGTGCGTGTGTGTTGGACCCAAATTGGTTGAGTAATGTACTGGTGGTTTGCTTATGTGGATTTGGACAATCCTTTCCCTCTTGAGCTAGCTTTTGGGTGTTGAATTAGACCCATGTGTCATATCTTTCCACATATGATATTGAGGATCAATGCAAACATCCTGCTCATAATCTTTTTGAACCATAATATCTCTTATGGTTCAGTTATTTTGAAACACATCTTTCAAGTCTCAATCTTTTATATTGTAGGCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAGGTGGAGCTCTTTCTTTGTACTTGCATTTTTTTTTGGGATAATGGAAATAATTTTTTGCTTCATGATCATTTTTTTAGAGTTCATACTTCATAAGTCCTTAAAAGAACAAATAAATCTTTTGACATCTGCTGGGATTGCATATTTCAAGGTGTTAGTTCCTGTAATGTTCTAGGAAAGAGATTAAGTTTAGTTTGGCATTTATATGTGCCTATGTTAACCTGAAATAGCTTTTTCCTTTTTTTTTTTGGATAAAATATGTTGACCTGGAACAGTAATGGTGGTGTTCTTTCACTACAGGAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATA</genome_strand>
        <mrna_strand>AGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG..............................................................................ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG.........................................................................................................................................................................................................................................................................................................GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316302" ref_strand="+" ref_description="SGN-E316302 [cTOA-23-N24]">
      <seq>aatcaagctttaatactacaacaatgtcacgattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggtggtgttcttctctatgctacatcttcctcctcttcctctggatttgggtatgggagttttgagaagcaaaggcagaggttgcctgtgtataagtacaaaactgctattctttactcagtggagactcatgctactaccatcattgttggagaaactggaagtggaaaaacaactcaaattcctcagtacctgagagaagctggttgggctgagggagggcgaatgattgcttgtacccaaccaaggagattggcagtccaggcagttgctacaagagttgctgaagaaatggatgttaaacttggtgaggaagttggctatactattcgatttgaagatatcacgaatgaggaattaactagggtcatatttcttactgatggggttttgctgagggacatgatggatgatcctctattgagcgagtatagcgtgattatggtagatgaagctcatganaggtctctctctacggacatcttattgggactactgaagaagattcggaagcgtcggcctgagctgcgtattataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="31739" stop="35663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32039" g_stop="32162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32241" g_stop="32385" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="269" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33314" g_stop="33388" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="344" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34087" g_stop="34176" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="434" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34474" g_stop="34553" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="514" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34554" i_stop="35145" i_length="592">
            <donor d_prob="0.781" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35146" g_stop="35215" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="584" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114">
            <donor d_prob="0.283" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35330" g_stop="35363" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="618" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E316302" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32039" e_stop="32162"/>
          <exon e_start="32241" e_stop="32385"/>
          <exon e_start="33314" e_stop="33388"/>
          <exon e_start="34087" e_stop="34176"/>
          <exon e_start="34474" e_stop="34553"/>
          <exon e_start="35146" e_stop="35215"/>
          <exon e_start="35330" e_stop="35363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGGGTAACCTTTTTTTTTCTATAATTTTTTTTATTTTTTTTGTATATGTTGTTATTTATGTAGTATTTGTGTGATTTCAAGATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAGGTTGTTTTTCTCTATTTTCTGTAAAGTTCATGTTTTTGATTTAGTATGATGTGAAATGTCCTCCTTGGAGTAATATTTGACAGTTTTGAACTTGTTGGGGTTGGCTATATGAATTCTCAGACCTCAGTATCTGTTGTGATTTAGTATTTAGGTATTCAACATAGTTAGACCATGAACTGTCTTCCATTAACCAGAACTGTGGTGGAGCCATGACTTCATTAAGGGAATTCAAAATATAAAGGAGAAAACTCACGAAGAAGCGATGAGAATTCAGCATATAATATATAATAGTATTAAGTATATACACAGGTGTGCAGGGGAAAAAGATTGACCTATATATGCAGTGTAGGTGTCAGTTGACACGCCTTGGACAAAGGTGACTCTGGCACAATTTAAAAGGGGATTCAAAAATATGCCTGAATGCATCTTCGTCACTGCAACTTCACTTATATCAAGGGGATTCTAAAACTTATATACAAAAAGATTTATGTTTTAACCTTTTTACACAGTATAGTTTTCAGACGGACTTCCTTATTTGTGTTTTTGGGGGGAGGGGGAGTTATGCAGCATGTGAGGTGGTATCAGTAATAATTTTGAGTTGCAAAGAGTGGAAGTATGTCTTATGTTTGTAGGAGCAAGAGATATATAGTGGGAAAAAATTGCTTAGCCTCATAATGGCAGTGAATTGTTTCTCCATAATTTGGTTTAAAATTCTTCAATAGTTTTGGCAACCAAACATCAGAAATATTTACAGAACAATCATTTTTTCTGCTAAACATATTACTGTCAAGTGGAACCATAGATATTGTATCTTTGTTATTTGTCTAAAACATGTGAATGAACATATTGTTTTAGTTTGGTTAACAAAATAAACTCTTTTAGAAACTTGAAAAGTTTAATGGTATTTGATACATTTTAATGTGCGCAGTACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAGGTGTAGTATTCTGTTACTGAGCTCTATATGCTCTTTAATAAGTGAACTTTTGTGTCTTATATGTTTGTCTTGATATCTCATTCTAATCGAGAGTAGATGCAAGCCATATGGCTGCTTGTGAGGGACAAATATATTTGTATTTGTAACTTTATTTATGAGACTCTCCTGGATACTTGTATTTACAATCAACGTAGTTACTCTTCTGTTTTGGTTAAGAAAGTGAAAATCGCTACTATTGACATCTAGTTGGCCCAAACATATTGTTAGGGTGGATTATAATCCCACATTGATTGGTGGTTTGCTTGTATGGATTTGGGCAATCCTCCCCTCTTGAGTTAGCTTTTGGGGTTGAGTTAGGTCTAGATGTCATATCTTTATATGGTATCACTGTTAGGTTCATCCCCGTTTGGGCTCCAGGTCCATGCTTTAGTTTGGTCTGGGCGTGAAGAGTGTGCGTGTGTGTTGGACCCAAATTGGTTGAGTAATGTACTGGTGGTTTGCTTATGTGGATTTGGACAATCCTTTCCCTCTTGAGCTAGCTTTTGGGTGTTGAATTAGACCCATGTGTCATATCTTTCCACATATGATATTGAGGATCAATGCAAACATCCTGCTCATAATCTTTTTGAACCATAATATCTCTTATGGTTCAGTTATTTTGAAACACATCTTTCAAGTCTCAATCTTTTATATTGTAGGCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAGGTGGAGCTCTTTCTTTGTACTTGCATTTTTTTTTGGGATAATGGAAATAATTTTTTGCTTCATGATCATTTTTTTAGAGTTCATACTTCATAAGTCCTTAAAAGAACAAATAAATCTTTTGACATCTGCTGGGATTGCATATTTCAAGGTGTTAGTTCCTGTAATGTTCTAGGAAAGAGATTAAGTTTAGTTTGGCATTTATATGTGCCTATGTTAACCTGAAATAGCTTTTTCCTTTTTTTTTTTGGATAAAATATGTTGACCTGGAACAGTAATGGTGGTGTTCTTTCACTACAGGAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAGGTACTGTTTATGCTTTTTATGCCTTGAAAGGGTTCGAGTGCCTCCTTTTCTATCTTCTTCATCATGTAGTGCTGCTTTAGTTCTATTACTTACACCCTCGTTCTTGACTTTTAAGCTTCATGGAGTCTAAGTGTCAATCATTTCAATACTATTAGAATATTGTGTTTGGTAGATAAGACTGAAATAATAATCTAACTTTTTAAAAGTGGAGATTTATGTGTTGTCTAATCTAATAATCAATGTTTAAGCTTCACAATGCACATGATGGGCTGAGCTTAGAATTCCGCTAGCACTTGGATGTTTAATTTGTTTCTTTTCTTTGTCAAACTCAACACTGAATTGTGAGTAGCATTTCTTTAGAAACCGAGCTTGTAAAATTGGGGAAGAAGTATAGAGTCACAGGGAAATATAAAGAAAAAAAATTCACTTATTTGTCCTGAATGCTGTCTTAACTTTGAATTAGGGTGATTTCTTTCCCAAAAACTCAGACGTGCTTATGAAATATAATCCACTTTCTACTTCTAGCTGATACTGAAAATGTCTACTGGAAGGTGAAAATTGTGTACTCTGATTTGTCTTTATAATCATACAGTGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAGGTTGATCAGGAAGTACTCTAGACTGGTTATACGTATTTTCTTATCGTTTGAGTGCACTAAGTTTAGTTCTGGTCTCTAAAAATGTTATTGTTCCTATGGCTTCTGGAAATTTAGATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAA</genome_strand>
        <mrna_strand>AATCAAGCTTTAATACTACAACAATGTCACGATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG..............................................................................ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAGAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGCTATACTATTCGATTTGAAGATATCACGAATGAG.........................................................................................................................................................................................................................................................................................................GAATTAACTAGGGTCATATTTCTTACTGATGGGGTTTTGCTGAGGGACATGATGGATGATCCTCTATTGAGCGAGTATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGATTATGGTAGATGAAGCTCATGANAGGTCTCTCTCTACGGACATCTTATTGGGACTACTGAAGAAG..................................................................................................................ATTCGGAAGCGTCGGCCTGAGCTGCGTATTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446753" ref_strand="+" ref_description="SGN-E446753 [cSTA-22-H24]">
      <seq>ttcaactctaatactacaaaaatgtcacaattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggtggtgttcttctctatactacatcttcctcctcttcctctggatttgggtatgggagtttagagaagcaaagacagaggttacctgtgtacaagtacaaaactgctattctttactcagtggagactcatgctactaccattattgttggagaaactggaagtggaaaaaccactcaaattcctcagtacctgaaagaagctggttgggctgagggagggcgaatgattgcttgtacccaaccaaggagactggcagtccaggcagttgctacgagagttgccgaagaaatggatgttaaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaattaactagggtcaaatttcttactgatggggttttgctgaaggaaatgatggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="31741" stop="34833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32040" g_stop="32162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32241" g_stop="32385" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="267" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33314" g_stop="33388" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="342" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34087" g_stop="34176" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34474" g_stop="34533" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="492" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E446753" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32040" e_stop="32162"/>
          <exon e_start="32241" e_stop="32385"/>
          <exon e_start="33314" e_stop="33388"/>
          <exon e_start="34087" e_stop="34176"/>
          <exon e_start="34474" e_stop="34533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGGGTAACCTTTTTTTTTCTATAATTTTTTTTATTTTTTTTGTATATGTTGTTATTTATGTAGTATTTGTGTGATTTCAAGATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAGGTTGTTTTTCTCTATTTTCTGTAAAGTTCATGTTTTTGATTTAGTATGATGTGAAATGTCCTCCTTGGAGTAATATTTGACAGTTTTGAACTTGTTGGGGTTGGCTATATGAATTCTCAGACCTCAGTATCTGTTGTGATTTAGTATTTAGGTATTCAACATAGTTAGACCATGAACTGTCTTCCATTAACCAGAACTGTGGTGGAGCCATGACTTCATTAAGGGAATTCAAAATATAAAGGAGAAAACTCACGAAGAAGCGATGAGAATTCAGCATATAATATATAATAGTATTAAGTATATACACAGGTGTGCAGGGGAAAAAGATTGACCTATATATGCAGTGTAGGTGTCAGTTGACACGCCTTGGACAAAGGTGACTCTGGCACAATTTAAAAGGGGATTCAAAAATATGCCTGAATGCATCTTCGTCACTGCAACTTCACTTATATCAAGGGGATTCTAAAACTTATATACAAAAAGATTTATGTTTTAACCTTTTTACACAGTATAGTTTTCAGACGGACTTCCTTATTTGTGTTTTTGGGGGGAGGGGGAGTTATGCAGCATGTGAGGTGGTATCAGTAATAATTTTGAGTTGCAAAGAGTGGAAGTATGTCTTATGTTTGTAGGAGCAAGAGATATATAGTGGGAAAAAATTGCTTAGCCTCATAATGGCAGTGAATTGTTTCTCCATAATTTGGTTTAAAATTCTTCAATAGTTTTGGCAACCAAACATCAGAAATATTTACAGAACAATCATTTTTTCTGCTAAACATATTACTGTCAAGTGGAACCATAGATATTGTATCTTTGTTATTTGTCTAAAACATGTGAATGAACATATTGTTTTAGTTTGGTTAACAAAATAAACTCTTTTAGAAACTTGAAAAGTTTAATGGTATTTGATACATTTTAATGTGCGCAGTACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAGGTGTAGTATTCTGTTACTGAGCTCTATATGCTCTTTAATAAGTGAACTTTTGTGTCTTATATGTTTGTCTTGATATCTCATTCTAATCGAGAGTAGATGCAAGCCATATGGCTGCTTGTGAGGGACAAATATATTTGTATTTGTAACTTTATTTATGAGACTCTCCTGGATACTTGTATTTACAATCAACGTAGTTACTCTTCTGTTTTGGTTAAGAAAGTGAAAATCGCTACTATTGACATCTAGTTGGCCCAAACATATTGTTAGGGTGGATTATAATCCCACATTGATTGGTGGTTTGCTTGTATGGATTTGGGCAATCCTCCCCTCTTGAGTTAGCTTTTGGGGTTGAGTTAGGTCTAGATGTCATATCTTTATATGGTATCACTGTTAGGTTCATCCCCGTTTGGGCTCCAGGTCCATGCTTTAGTTTGGTCTGGGCGTGAAGAGTGTGCGTGTGTGTTGGACCCAAATTGGTTGAGTAATGTACTGGTGGTTTGCTTATGTGGATTTGGACAATCCTTTCCCTCTTGAGCTAGCTTTTGGGTGTTGAATTAGACCCATGTGTCATATCTTTCCACATATGATATTGAGGATCAATGCAAACATCCTGCTCATAATCTTTTTGAACCATAATATCTCTTATGGTTCAGTTATTTTGAAACACATCTTTCAAGTCTCAATCTTTTATATTGTAGGCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAGGTGGAGCTCTTTCTTTGTACTTGCATTTTTTTTTGGGATAATGGAAATAATTTTTTGCTTCATGATCATTTTTTTAGAGTTCATACTTCATAAGTCCTTAAAAGAACAAATAAATCTTTTGACATCTGCTGGGATTGCATATTTCAAGGTGTTAGTTCCTGTAATGTTCTAGGAAAGAGATTAAGTTTAGTTTGGCATTTATATGTGCCTATGTTAACCTGAAATAGCTTTTTCCTTTTTTTTTTTGGATAAAATATGTTGACCTGGAACAGTAATGGTGGTGTTCTTTCACTACAGGAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGAT</genome_strand>
        <mrna_strand>TTCAA-CTCTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATACTACATCTTCCTCCTCTTCCTCTGG..............................................................................ATTTGGGTATGGGAGTTTAGAGAAGCAAAGACAGAGGTTACCTGTGTACAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATTATTGTTGGAGAAACTGGAAGTGGAAAAACCACTCAAATTCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGACTGGCAGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGCTACGAGAGTTGCCGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG.........................................................................................................................................................................................................................................................................................................GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAAGGAAATGATGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316393" ref_strand="+" ref_description="SGN-E316393 [cTOA-25-D7]">
      <seq>aagctttaatactacaaaaatgtcacaattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggtggtgttcttctctatgctacatcttcctcctcttcctctggatttgggtatgggagttttgagaagcaaaggcagaggttgcctgtgtataagtacaaaactgctattctttactcagtggagactcatgctactaccatcattgttggagaaactggaagtggaaaaacaactcaaattcctcagtacctgaaagaagctggttgggctgagggagggcgaatgattgcttgtacccaaccaaggagattggcagtccaggcagttgctacaagagttgctgaagaaatggatgttaaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaattaactagggtcaaatttcttactgatggggttttgctgagggaaatgatggatgatcctctattgagcaagtatagtgtgattatggtagatgaagctcatgaaaggtctctctcgacggacatcttattgggactactgaaaaagattcaaaagcgtcggcctgagctgcgtattataatatcatcagctacgattgaagcaaaatcaatggctgctttctttaatacgagaagacgacgggaggaggagcaaggaccaagaaaagaacctgctattctgtcagttgagggtaggggattttatgtggagatattctatgttgatgatcctgtttctgatacgttcagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="31743" stop="37248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32043" g_stop="32162" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32241" g_stop="32385" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="265" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33314" g_stop="33388" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="340" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34087" g_stop="34176" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="430" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34474" g_stop="34553" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="510" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34554" i_stop="35145" i_length="592">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35146" g_stop="35215" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="580" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114">
            <donor d_prob="0.283" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35330" g_stop="35415" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="666" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="35416" i_stop="36614" i_length="1199">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36615" g_stop="36672" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="724" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36673" i_stop="36884" i_length="212">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36885" g_stop="36948" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="787" r_length="63" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E316393" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32043" e_stop="32162"/>
          <exon e_start="32241" e_stop="32385"/>
          <exon e_start="33314" e_stop="33388"/>
          <exon e_start="34087" e_stop="34176"/>
          <exon e_start="34474" e_stop="34553"/>
          <exon e_start="35146" e_stop="35215"/>
          <exon e_start="35330" e_stop="35415"/>
          <exon e_start="36615" e_stop="36672"/>
          <exon e_start="36885" e_stop="36948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGGGTAACCTTTTTTTTTCTATAATTTTTTTTATTTTTTTTGTATATGTTGTTATTTATGTAGTATTTGTGTGATTTCAAGATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAGGTTGTTTTTCTCTATTTTCTGTAAAGTTCATGTTTTTGATTTAGTATGATGTGAAATGTCCTCCTTGGAGTAATATTTGACAGTTTTGAACTTGTTGGGGTTGGCTATATGAATTCTCAGACCTCAGTATCTGTTGTGATTTAGTATTTAGGTATTCAACATAGTTAGACCATGAACTGTCTTCCATTAACCAGAACTGTGGTGGAGCCATGACTTCATTAAGGGAATTCAAAATATAAAGGAGAAAACTCACGAAGAAGCGATGAGAATTCAGCATATAATATATAATAGTATTAAGTATATACACAGGTGTGCAGGGGAAAAAGATTGACCTATATATGCAGTGTAGGTGTCAGTTGACACGCCTTGGACAAAGGTGACTCTGGCACAATTTAAAAGGGGATTCAAAAATATGCCTGAATGCATCTTCGTCACTGCAACTTCACTTATATCAAGGGGATTCTAAAACTTATATACAAAAAGATTTATGTTTTAACCTTTTTACACAGTATAGTTTTCAGACGGACTTCCTTATTTGTGTTTTTGGGGGGAGGGGGAGTTATGCAGCATGTGAGGTGGTATCAGTAATAATTTTGAGTTGCAAAGAGTGGAAGTATGTCTTATGTTTGTAGGAGCAAGAGATATATAGTGGGAAAAAATTGCTTAGCCTCATAATGGCAGTGAATTGTTTCTCCATAATTTGGTTTAAAATTCTTCAATAGTTTTGGCAACCAAACATCAGAAATATTTACAGAACAATCATTTTTTCTGCTAAACATATTACTGTCAAGTGGAACCATAGATATTGTATCTTTGTTATTTGTCTAAAACATGTGAATGAACATATTGTTTTAGTTTGGTTAACAAAATAAACTCTTTTAGAAACTTGAAAAGTTTAATGGTATTTGATACATTTTAATGTGCGCAGTACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAGGTGTAGTATTCTGTTACTGAGCTCTATATGCTCTTTAATAAGTGAACTTTTGTGTCTTATATGTTTGTCTTGATATCTCATTCTAATCGAGAGTAGATGCAAGCCATATGGCTGCTTGTGAGGGACAAATATATTTGTATTTGTAACTTTATTTATGAGACTCTCCTGGATACTTGTATTTACAATCAACGTAGTTACTCTTCTGTTTTGGTTAAGAAAGTGAAAATCGCTACTATTGACATCTAGTTGGCCCAAACATATTGTTAGGGTGGATTATAATCCCACATTGATTGGTGGTTTGCTTGTATGGATTTGGGCAATCCTCCCCTCTTGAGTTAGCTTTTGGGGTTGAGTTAGGTCTAGATGTCATATCTTTATATGGTATCACTGTTAGGTTCATCCCCGTTTGGGCTCCAGGTCCATGCTTTAGTTTGGTCTGGGCGTGAAGAGTGTGCGTGTGTGTTGGACCCAAATTGGTTGAGTAATGTACTGGTGGTTTGCTTATGTGGATTTGGACAATCCTTTCCCTCTTGAGCTAGCTTTTGGGTGTTGAATTAGACCCATGTGTCATATCTTTCCACATATGATATTGAGGATCAATGCAAACATCCTGCTCATAATCTTTTTGAACCATAATATCTCTTATGGTTCAGTTATTTTGAAACACATCTTTCAAGTCTCAATCTTTTATATTGTAGGCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAGGTGGAGCTCTTTCTTTGTACTTGCATTTTTTTTTGGGATAATGGAAATAATTTTTTGCTTCATGATCATTTTTTTAGAGTTCATACTTCATAAGTCCTTAAAAGAACAAATAAATCTTTTGACATCTGCTGGGATTGCATATTTCAAGGTGTTAGTTCCTGTAATGTTCTAGGAAAGAGATTAAGTTTAGTTTGGCATTTATATGTGCCTATGTTAACCTGAAATAGCTTTTTCCTTTTTTTTTTTGGATAAAATATGTTGACCTGGAACAGTAATGGTGGTGTTCTTTCACTACAGGAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAGGTACTGTTTATGCTTTTTATGCCTTGAAAGGGTTCGAGTGCCTCCTTTTCTATCTTCTTCATCATGTAGTGCTGCTTTAGTTCTATTACTTACACCCTCGTTCTTGACTTTTAAGCTTCATGGAGTCTAAGTGTCAATCATTTCAATACTATTAGAATATTGTGTTTGGTAGATAAGACTGAAATAATAATCTAACTTTTTAAAAGTGGAGATTTATGTGTTGTCTAATCTAATAATCAATGTTTAAGCTTCACAATGCACATGATGGGCTGAGCTTAGAATTCCGCTAGCACTTGGATGTTTAATTTGTTTCTTTTCTTTGTCAAACTCAACACTGAATTGTGAGTAGCATTTCTTTAGAAACCGAGCTTGTAAAATTGGGGAAGAAGTATAGAGTCACAGGGAAATATAAAGAAAAAAAATTCACTTATTTGTCCTGAATGCTGTCTTAACTTTGAATTAGGGTGATTTCTTTCCCAAAAACTCAGACGTGCTTATGAAATATAATCCACTTTCTACTTCTAGCTGATACTGAAAATGTCTACTGGAAGGTGAAAATTGTGTACTCTGATTTGTCTTTATAATCATACAGTGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAGGTTGATCAGGAAGTACTCTAGACTGGTTATACGTATTTTCTTATCGTTTGAGTGCACTAAGTTTAGTTCTGGTCTCTAAAAATGTTATTGTTCCTATGGCTTCTGGAAATTTAGATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACGAGGTTGGTTCTTCTTGCGACGAATGTTTACCGAAGCTTTATAATTCTATACTTAAAAGTTCAAAAAGGTTGATTCTCCTTTATGCTTTCTATTCATGCAATTTCTCAGTAGGTTATTCTTCTTTTTTGAGTTGTATTCTCTAAATGGATATATCAAGTACTTTTCACCTTGTTGGAATAAGTGCCTTGTCTTATTTTGAATTTGTAGTGGAAAATGTGAGCTTTTCTTGCACTAGAATGAACTCCCTTGAAAAACATTTGTGTGTGTGTAAACGAGTTGCTCTACCAACCGAGCTATAGCCCTTAGTCCAAAGTTTAAGAAAAGGTCATATTTAAGAAAATTGTTCCCAGTGCACTTCCCTTTTAGTATTAAATCATGAGCGCTGATGGCTTCTCCATGAGGTCCTTGTGGGCAGTTGAGGTATGTCATCTTTTCTATCCAAGGGGGTTAAAAGGGGTGAGGTATGCTCCTGGCATCTTGGAGTTGCTTGATGATGGATGGAAGAGTTTGAACTCATGCTATCAATTCTTTTCCACAAGACTCAAGTTTTAGCTATAGCCTTTGTTGAATTGAGTAGAGAAGACAATCCTTAGAATAGAGATTGAGCTGATCTTATGCAAACTCTGGAAACATATTAAAACAAGGATTATTGTTTATTAGTTTTGATAAGTTGTTTATGAGAGCTAATTGATGAATACTCATTGGGGTTTTGGACTAAATGAATACTTTCTCTCAAGTGAGAACTAAAATAAAGTGAATACTTGTTTTACTTTTGCTTTGTCACTCACCTTTGGTTCCTGTCTCTTGAGTCTTTTGGCATTGGTTTGACACAATGATATAGTAGTCCTTGTGAAGCTTAAGATTCTCAACTTACTTCTCCCATTTGTTGACCACTCTATCTGTGTAAATTTTGTTAACAGGACGATCAATGGTCATAGTAGTTGGTTCATTAGTGAATGATGCTTACCGCCTCTGTCTGAGCAATGCTTAGTAGAATTTTATTAATGCTATTAAAAATGATGATAGAAACTCTACGGTAAGAATAGAAATGACTTTTGAAGAAGCGGTTGATTTGTTACTAGCTATAGAAAAATTTGAAGTACTTTTTTTTAATAACTGTAGTGTCTGGGCTAGCTGGCATGCACCTCGACTAATTCCACTGTGTGCACTGACACTTCTACATTTGACCAAGAATTTGCAGAAGACGACGGGAGGAGGAGCAAGGACCAAGAAAAGAACCTGCTATTCTGTCAGTTGAGGTATACGGATTTGTTCTTTGCATTCGGCTTTTGTCTGCATAACCAGAACTCAATAAAGTTAATTAACTAGATTGCTTAGTTGAATTGCAGCATGTCTATAGAATCATTACAGACTCTGTGAACATCTAGGGTAGAGGATTTTGTTTATGATTTTCTTTGGTTGATTTGCAAACCTTACTGAAATATCATCTTTTTACACTGTGATCTTCTAGGGTAGGGGATTTAATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGATTACGTTCAGTCTG</genome_strand>
        <mrna_strand>AAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG..............................................................................ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG.........................................................................................................................................................................................................................................................................................................GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAG..................................................................................................................ATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACGACGGGAGGAGGAGCAAGGACCAAGAAAAGAACCTGCTATTCTGTCAGTTGAG....................................................................................................................................................................................................................GGTAGGGGATTTTATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGA-TACGTTCAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578099" ref_strand="+" ref_description="SGN-E578099 [LE08EA11]">
      <seq>tcttattgggactactgaaaaagattcaaaagcgtcggcctgagctgcgtattataatatcatcagctacgattgaagcaaaatcaatggctgctttctttaatacgagaatttgcagaagacgacgggaggaggagcaaggaccaagaaaagaacctgctattctgtcagttgagggtaggggatttaatgtggagatattctatgttgatgatcctgtttctgattacgttcagtctgctgtttcaacagtgatgtcgatccatgaccaggagcggatgggagatatcctggtgtttctcactggtcaagatgatattgatactgcaatacaattgctcactgaagaagcccaaagtagtggcaagcaaggactggtttctgtgccactatactcgggacttcctcgagcagatcaggaccttgtgttttcccctactcccagaggaaagagaaaagtgatattttccacaaatattgctgagacgtcattgactctagaaggtattgtctatgttgttgatagcgggttctcaaaacaacgtttctacaatccgatttcagatattgagaacttggtagtggcaccaatatcaaaggcatctgctcgacaaagggctggtagagctggaagacgtcgaccaggaaagtgttttacgctctacacagaagattactttttcaatgagatgtctgtggtgggaatccccgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="34893" stop="39323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35193" g_stop="35215" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114">
            <donor d_prob="0.283" d_score="0.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35330" g_stop="35415" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="109" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35416" i_stop="36605" i_length="1190">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36606" g_stop="36672" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="176" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36673" i_stop="36884" i_length="212">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36885" g_stop="36980" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="272" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36981" i_stop="37698" i_length="718">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37699" g_stop="37798" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="372" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37799" i_stop="37949" i_length="151">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37950" g_stop="37996" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="419" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37997" i_stop="38079" i_length="83">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38080" g_stop="38163" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="503" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38164" i_stop="38263" i_length="100">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38264" g_stop="38317" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="557" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38318" i_stop="38921" i_length="604">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38922" g_stop="39022" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="658" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E578099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35193" e_stop="35215"/>
          <exon e_start="35330" e_stop="35415"/>
          <exon e_start="36606" e_stop="36672"/>
          <exon e_start="36885" e_stop="36980"/>
          <exon e_start="37699" e_stop="37798"/>
          <exon e_start="37950" e_stop="37996"/>
          <exon e_start="38080" e_stop="38163"/>
          <exon e_start="38264" e_stop="38317"/>
          <exon e_start="38922" e_stop="39022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTGGGACTACTGAAAAAGGTTGATCAGGAAGTACTCTAGACTGGTTATACGTATTTTCTTATCGTTTGAGTGCACTAAGTTTAGTTCTGGTCTCTAAAAATGTTATTGTTCCTATGGCTTCTGGAAATTTAGATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACGAGGTTGGTTCTTCTTGCGACGAATGTTTACCGAAGCTTTATAATTCTATACTTAAAAGTTCAAAAAGGTTGATTCTCCTTTATGCTTTCTATTCATGCAATTTCTCAGTAGGTTATTCTTCTTTTTTGAGTTGTATTCTCTAAATGGATATATCAAGTACTTTTCACCTTGTTGGAATAAGTGCCTTGTCTTATTTTGAATTTGTAGTGGAAAATGTGAGCTTTTCTTGCACTAGAATGAACTCCCTTGAAAAACATTTGTGTGTGTGTAAACGAGTTGCTCTACCAACCGAGCTATAGCCCTTAGTCCAAAGTTTAAGAAAAGGTCATATTTAAGAAAATTGTTCCCAGTGCACTTCCCTTTTAGTATTAAATCATGAGCGCTGATGGCTTCTCCATGAGGTCCTTGTGGGCAGTTGAGGTATGTCATCTTTTCTATCCAAGGGGGTTAAAAGGGGTGAGGTATGCTCCTGGCATCTTGGAGTTGCTTGATGATGGATGGAAGAGTTTGAACTCATGCTATCAATTCTTTTCCACAAGACTCAAGTTTTAGCTATAGCCTTTGTTGAATTGAGTAGAGAAGACAATCCTTAGAATAGAGATTGAGCTGATCTTATGCAAACTCTGGAAACATATTAAAACAAGGATTATTGTTTATTAGTTTTGATAAGTTGTTTATGAGAGCTAATTGATGAATACTCATTGGGGTTTTGGACTAAATGAATACTTTCTCTCAAGTGAGAACTAAAATAAAGTGAATACTTGTTTTACTTTTGCTTTGTCACTCACCTTTGGTTCCTGTCTCTTGAGTCTTTTGGCATTGGTTTGACACAATGATATAGTAGTCCTTGTGAAGCTTAAGATTCTCAACTTACTTCTCCCATTTGTTGACCACTCTATCTGTGTAAATTTTGTTAACAGGACGATCAATGGTCATAGTAGTTGGTTCATTAGTGAATGATGCTTACCGCCTCTGTCTGAGCAATGCTTAGTAGAATTTTATTAATGCTATTAAAAATGATGATAGAAACTCTACGGTAAGAATAGAAATGACTTTTGAAGAAGCGGTTGATTTGTTACTAGCTATAGAAAAATTTGAAGTACTTTTTTTTAATAACTGTAGTGTCTGGGCTAGCTGGCATGCACCTCGACTAATTCCACTGTGTGCACTGACACTTCTACATTTGACCAAGAATTTGCAGAAGACGACGGGAGGAGGAGCAAGGACCAAGAAAAGAACCTGCTATTCTGTCAGTTGAGGTATACGGATTTGTTCTTTGCATTCGGCTTTTGTCTGCATAACCAGAACTCAATAAAGTTAATTAACTAGATTGCTTAGTTGAATTGCAGCATGTCTATAGAATCATTACAGACTCTGTGAACATCTAGGGTAGAGGATTTTGTTTATGATTTTCTTTGGTTGATTTGCAAACCTTACTGAAATATCATCTTTTTACACTGTGATCTTCTAGGGTAGGGGATTTAATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGATTACGTTCAGTCTGCTGTTTCAACAGTGATGTCGATCCATGACCAGGTACAAACTAGAACATGACTTCTTTGAACTATTTGGCTACATCATGCTCAAATGTGAATAATGTCGAGTTTGGTTCTCATTGATGAAATCACTTCTGTATCCTTGATTCCCACTTGATAATGGGTGTACAACAGTCAGTTTTTGGCTAAGTTGCGCAGACTCTTCACTTTCGGTGCCGCACCCATGTCGGATTCTCCAAAAACATACGAATTTTGGAGAATACGACACACCTGTTGACATTTTTAAGAGTCCAAACAACATATGCTTTTGGGCACCTTTGCTCTCAGCAGAGGCACGTCTCCTCTAAATAATTATGGTCCAGCTAACTTCTTTTCATTATCTTAATTGAGTTCTATGGCTACTCTGAAGGATATGTCAAATTAAAATTTTGAAGCACGTGGTAAATAAATTTCCAAAGACCCATTTAAGTTGAGGGGGTGGCTTATTCAGACAATTCTTGGTGCAGAAACTCAACTGAGTGTTATGCCTTTGTAATGTTGTTTTGTTTGTCTACAATGTGTTGCATGTGATCTTGTACTAGATGTCCTTGAATGAGACTATGATTGAAATCCGTGATGTCTCAATGCTGCCTCTAGTGTTAGTGTAGTAATTCATTTTTGATTTCCCCAGGGTAACTTTCCCATGATTTCTTTCATCTTTGGTTCTTAATATACTATCATACAGCACTTGATTTATGGCTCTTCATTTATACTTGTAGGAGCGGATGGGAGATATCCTGGTGTTTCTCACTGGTCAAGATGATATTGATACTGCAATACAATTGCTCACTGAAGAAGCCCAAAGTAGTGGCAAGCAAGGTACTGAATAGTCCTCTTAACCATTGCTAAGTGTGAATAGAATTGCTGACAAATATTAGAGAAGTGGTTGTAGATAAATACATTGCCTTGTATGAAATCAAAGAAAAGAAAAGATAGATAACATACGTTTTTCATTTCACTTTTCTTGCAGGACTGGTTTCTGTGCCACTATACTCGGGACTTCCTCGAGCAGATCAGGTAGGGTACTGCATCATGCAGTTTTTAAGATTAAGATTTTGTTGAACGTTCACCAAATGGTTCGGTTTCTTCCAATTGTACAGGACCTTGTGTTTTCCCCTACTCCCAGAGGAAAGAGAAAAGTGATATTTTCCACAAATATTGCTGAGACGTCATTGACTCTAGAAGTATAAATCTGAAACCTTGGGGTCAAAATCTTTGACGCATACATGTTATTACGTTTGTCATCATCATATTCCTGAGCTGATTTTTTTTTCTTGTTTTCAGGGTATTGTCTATGTTGTTGATAGCGGGTTCTCAAAACAACGTTTCTACAATCCGGTACTTTGTTTCTCTCTTTTTGACTTGACTCTTTTCCCATGCTTTTTTGTTCAGATTTTTGTGGTTGATGATGTTACTGTTATTCTGATATATTTCTACACGATGTGGATTTCGAACCTCATTTTGTAGCAATTTTCTAGATCGTCATTCTGGTTTTGTGCACCAAGAATCAGTATTGCCATACCTTATATGCATTACCCGTTTCCAGATGTCATGACTCCTGACTGTGCCTTTTGTAGAAACATTGATAATAAGCTTGTGTTCTATTAAGCTTGAATTTCTCACCCTTGAGCTCCCTCGTTTTTCCTGTTGGTCACTTTGGTCCATGTAAACATGGATGTACAAAACATGCTTTAATGAGCAAAAGTGGAAAGTAATTTGAGTCTCTCACTATGAAGAATGTACTCTATATGTTGGACTCTTGCTTCTTCTGATGAAAACTATCCGATACTTTTGTATTGAGCTTTCCTCAGTTCTGTTGATTCAGTTTCTGCCTTTCTGGTAATTAGTGCATAAAGATTGCAATATAGAAATGCCAAAAGAAATGCAATGTATGCATGTTATGCCTGATATTTCTTTTTATTTTGGATCTGCTTTAAATCAGATTTCAGATATTGAGAACTTGGTAGTGGCACCAATATCAAAGGCATCTGCTCGACAAAGGGCTGGTAGAGCTGGAAGAGTTCGACCAGGAAAGTGTTTTAG</genome_strand>
        <mrna_strand>TCTTATTGGGACTACTGAAAAAG..................................................................................................................ATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAGAAGACGACGGGAGGAGGAGCAAGGACCAAGAAAAGAACCTGCTATTCTGTCAGTTGAG....................................................................................................................................................................................................................GGTAGGGGATTTAATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGATTACGTTCAGTCTGCTGTTTCAACAGTGATGTCGATCCATGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGGATGGGAGATATCCTGGTGTTTCTCACTGGTCAAGATGATATTGATACTGCAATACAATTGCTCACTGAAGAAGCCCAAAGTAGTGGCAAGCAAG.......................................................................................................................................................GACTGGTTTCTGTGCCACTATACTCGGGACTTCCTCGAGCAGATCAG...................................................................................GACCTTGTGTTTTCCCCTACTCCCAGAGGAAAGAGAAAAGTGATATTTTCCACAAATATTGCTGAGACGTCATTGACTCTAGAA....................................................................................................GGTATTGTCTATGTTGTTGATAGCGGGTTCTCAAAACAACGTTTCTACAATCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGATATTGAGAACTTGGTAGTGGCACCAATATCAAAGGCATCTGCTCGACAAAGGGCTGGTAGAGCTGGAAGACGTCGACCAGGAAAGTGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260425" ref_strand="+" ref_description="SGN-E260425 [cLEG-66-E19]">
      <seq>cggatgggagatatcctggtgtttctcactggtcaagatgatattgatactgcaatacaattgctcactgaagaagcccaaagtagtggcaagcaaggactggtttctgtgccactatactcgggacttcctcgagcagatcaggaccttgtgttttcccctactcccagaggaaagagaaaaatgatattttccaccaatattgctgagacgacattgactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0060H24-vBe2m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0060H24.1" temp_strand="+" temp_description="C09SLf0060H24.1  AC233141.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0060H24 upload_account_name:spain (1 - 39405)">
        <position start="37402" stop="38459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37702" g_stop="37798" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37799" i_stop="37949" i_length="151">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37950" g_stop="37996" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="144" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37997" i_stop="38079" i_length="83">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38080" g_stop="38159" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="224" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0060H24.1" gen_strand="+" ref_id="SGN-E260425" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0060H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37702" e_stop="37798"/>
          <exon e_start="37950" e_stop="37996"/>
          <exon e_start="38080" e_stop="38159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATGGGAGATATCCTGGTGTTTCTCACTGGTCAAGATGATATTGATACTGCAATACAATTGCTCACTGAAGAAGCCCAAAGTAGTGGCAAGCAAGGTACTGAATAGTCCTCTTAACCATTGCTAAGTGTGAATAGAATTGCTGACAAATATTAGAGAAGTGGTTGTAGATAAATACATTGCCTTGTATGAAATCAAAGAAAAGAAAAGATAGATAACATACGTTTTTCATTTCACTTTTCTTGCAGGACTGGTTTCTGTGCCACTATACTCGGGACTTCCTCGAGCAGATCAGGTAGGGTACTGCATCATGCAGTTTTTAAGATTAAGATTTTGTTGAACGTTCACCAAATGGTTCGGTTTCTTCCAATTGTACAGGACCTTGTGTTTTCCCCTACTCCCAGAGGAAAGAGAAAAGTGATATTTTCCACAAATATTGCTGAGACGTCATTGACTCT</genome_strand>
        <mrna_strand>CGGATGGGAGATATCCTGGTGTTTCTCACTGGTCAAGATGATATTGATACTGCAATACAATTGCTCACTGAAGAAGCCCAAAGTAGTGGCAAGCAAG.......................................................................................................................................................GACTGGTTTCTGTGCCACTATACTCGGGACTTCCTCGAGCAGATCAG...................................................................................GACCTTGTGTTTTCCCCTACTCCCAGAGGAAAGAGAAAAATGATATTTTCCACCAATATTGCTGAGACGACATTGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>41</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2221" PGL_stop="1393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2221" e_stop="2193"/>
            <exon e_start="2021" e_stop="1393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.966"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="2221" e_stop="2193" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2192" i_stop="2022" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="2021" e_stop="1393" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2221" stop="2193"/>
              <exon start="2021" stop="1393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGATATGTGCCATTTCTCCAGCCCAGAG : TTGTAAGAGCGAGACTCTCAGTACCCTGAGATTTGCCCAGCGTGCAAAGGCAATCAAGAATAAGGCTGTTGTCAACGAGGAGATGCAAGATGATGTAAACATCTTGAGAGAAGTAATACGACAGTTAAAGGCAAACACCTGAACTCATTTTTGTTTGTATCTGTCTTAATAATTGGCTGGCGTATTCCTGTTTTTGTGAGTCTTGGTGAAATGAATGCCCTTTTTTCCTTTCTCTTTACAGGATGAACTGATAAGAGTAAAGGCCAATGGATCTCAAGCAGATCAAAAAGGAAATCATTCATTGGGGTGGAATGCACGTAGAAGCTTAAACCTTTTGAAATTCAACCTCAACCGTCCAATGACAGTACCTCCTCTAGATGAAGATGGTGACACAGAAATGGAGATCGTTGAGGAAGCTGAACTATTAGGTCTCCTGCCGGGAGGAAGTAAAGAGGTCGGTATCTTGCGAAAAACTCTTTCCAAGAGTTTCTTGGTTGGTCCTTCTGAAGGACGTAACGAGGAAAAGCACAGCTCATGCAAGGGAGAGGTAGGTTCTGAGGATGCAGACATCACCATGGAGGAAGAGGTACCTGAACAAGTTGTCCAACGTGATAACAAAGTTATTCATG</gDNA_template>
            <first_frame> M  I  C  A  I  S  P  A  Q  S :   C  K  S  E  T  L  S  T  L  R  F  A  Q  R  A  K  A  I  K  N  K  A  V  V  N  E  E  M  Q  D  D  V  N  I  L  R  E  V  I  R  Q  L  K  A  N  T  *  T  H  F  C  L  Y  L  S  *  *  L  A  G  V  F  L  F  L  *  V  L  V  K  *  M  P  F  F  P  F  S  L  Q  D  E  L  I  R  V  K  A  N  G  S  Q  A  D  Q  K  G  N  H  S  L  G  W  N  A  R  R  S  L  N  L  L  K  F  N  L  N  R  P  M  T  V  P  P  L  D  E  D  G  D  T  E  M  E  I  V  E  E  A  E  L  L  G  L  L  P  G  G  S  K  E  V  G  I  L  R  K  T  L  S  K  S  F  L  V  G  P  S  E  G  R  N  E  E  K  H  S  S  C  K  G  E  V  G  S  E  D  A  D  I  T  M  E  E  E  V  P  E  Q  V  V  Q  R  D  N  K  V  I  H  </first_frame>
            <second_frame>  *  Y  V  P  F  L  Q  P  R   : V  V  R  A  R  L  S  V  P  *  D  L  P  S  V  Q  R  Q  S  R  I  R  L  L  S  T  R  R  C  K  M  M  *  T  S  *  E  K  *  Y  D  S  *  R  Q  T  P  E  L  I  F  V  C  I  C  L  N  N  W  L  A  Y  S  C  F  C  E  S  W  *  N  E  C  P  F  F  L  S  L  Y  R  M  N  *  *  E  *  R  P  M  D  L  K  Q  I  K  K  E  I  I  H  W  G  G  M  H  V  E  A  *  T  F  *  N  S  T  S  T  V  Q  *  Q  Y  L  L  *  M  K  M  V  T  Q  K  W  R  S  L  R  K  L  N  Y  *  V  S  C  R  E  E  V  K  R  S  V  S  C  E  K  L  F  P  R  V  S  W  L  V  L  L  K  D  V  T  R  K  S  T  A  H  A  R  E  R  *  V  L  R  M  Q  T  S  P  W  R  K  R  Y  L  N  K  L  S  N  V  I  T  K  L  F  M </second_frame>
            <third_frame>   D  M  C  H  F  S  S  P  E  :  L  *  E  R  D  S  Q  Y  P  E  I  C  P  A  C  K  G  N  Q  E  *  G  C  C  Q  R  G  D  A  R  *  C  K  H  L  E  R  S  N  T  T  V  K  G  K  H  L  N  S  F  L  F  V  S  V  L  I  I  G  W  R  I  P  V  F  V  S  L  G  E  M  N  A  L  F  S  F  L  F  T  G  *  T  D  K  S  K  G  Q  W  I  S  S  R  S  K  R  K  S  F  I  G  V  E  C  T  *  K  L  K  P  F  E  I  Q  P  Q  P  S  N  D  S  T  S  S  R  *  R  W  *  H  R  N  G  D  R  *  G  S  *  T  I  R  S  P  A  G  R  K  *  R  G  R  Y  L  A  K  N  S  F  Q  E  F  L  G  W  S  F  *  R  T  *  R  G  K  A  Q  L  M  Q  G  R  G  R  F  *  G  C  R  H  H  H  G  G  R  G  T  *  T  S  C  P  T  *  *  Q  S  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1807" stop="1394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPFFPFSLQDELIRVKANGSQADQKGNHSLGWNARRSLNLLKFNLNRPMTVPPLDEDGDTEMEIVEEAELLGLLPGGSKEVGILRKTLSKSFLVGPSEGRNEEKHSSCKGEVGSEDADITMEEEVPEQVVQRDNKVIH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10321" PGL_stop="11216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10321" e_stop="11032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="10321" e_stop="11032" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10321" stop="10817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10408" stop="10994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10410" stop="11015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10410" stop="10998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10411" stop="11030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10411" stop="11029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10414" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10414" stop="11028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10414" stop="11005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10414" stop="10998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10417" stop="10956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10419" stop="10831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10438" stop="11025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10442" stop="11030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10442" stop="10973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10462" stop="10993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10519" stop="11017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCCACCACCGCCATTACGTGTCCAACAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTA</gDNA_template>
            <first_frame> V  A  T  T  A  I  T  C  P  T  K  N  S  Y  I  *  S  P  F  F  L  S  S  S  S  K  K  K  R  K  K  I  P  N  L  Q  W  Q  N  P  Q  K  F  S  H  Q  S  S  F  S  S  S  F  S  V  Y  F  L  H  Q  T  H  *  A  E  S  S  A  E  E  H  K  S  K  T  *  K  Q  I  R  K  F  K  I  *  V  S  T  V  S  K  N  T  T  E  I  C  G  I  S  M  V  L  *  V  L  Y  *  V  F  L  K  L  L  K  Q  K  N  K  L  F  L  V  L  N  I  I  *  K  S  Q  L  L  L  N  H  L  A  H  Q  N  C  S  M  L  L  L  L  L  K  L  G  R  R  R  R  N  C  L  R  F  L  L  L  L  H  R  L  Q  S  E  F  S  M  V  D  S  G  *  K  L  K  L  L  V  V  L  M  L  F  N  L  I  L  K  Y  F  N  L  *  P  F  Y  F  F  *  P  I  L  S  S  L  V  Y  Y  V  M  Q  *  S  M  N  D  I  C  I  S  M  L  L  *  I  N  Y  A  I  S  </first_frame>
            <second_frame>  L  P  P  P  P  L  R  V  Q  Q  K  T  P  I  Y  S  P  P  S  S  F  L  L  H  Q  K  K  K  E  K  K  S  P  I  S  N  G  K  I  H  K  N  S  L  I  N  P  H  S  L  L  H  F  Q  S  I  F  F  I  K  R  I  R  R  K  A  R  R  K  N  T  N  Q  K  R  E  N  K  S  G  N  S  R  S  R  *  V  L  C  R  R  T  Q  Q  R  F  A  A  Y  Q  W  C  F  E  F  F  I  E  F  F  S  S  C  *  S  R  K  T  S  C  F  W  C  *  I  L  S  K  N  L  S  Y  C  *  I  I  *  L  T  K  I  V  R  C  C  C  C  C  *  S  L  G  E  E  E  G  I  A  Y  V  F  S  F  S  F  T  G  Y  K  V  N  F  R  W  L  I  V  A  K  S  *  N  F  *  *  C  *  C  C  L  I  *  F  *  S  T  L  I  C  S  L  F  I  F  F  N  L  F  *  V  L  L  C  T  M  *  C  N  N  Q  *  M  T  Y  V  L  V  C  Y  Y  R  *  I  M  L  S  L </second_frame>
            <third_frame>   C  H  H  R  H  Y  V  S  N  K  K  L  L  Y  I  V  P  L  L  P  F  F  F  I  K  K  K  K  K  K  N  P  Q  S  P  M  A  K  S  T  K  I  L  S  S  I  L  I  L  F  F  I  F  S  L  F  S  S  S  N  A  L  G  G  K  L  G  G  R  T  Q  I  K  N  V  K  T  N  Q  E  I  Q  D  L  G  K  Y  C  V  E  E  H  N  R  D  L  R  H  I  N  G  A  L  S  S  L  L  S  F  S  Q  V  V  E  A  E  K  Q  V  V  S  G  V  K  Y  Y  L  K  I  S  A  I  V  K  S  S  S  S  P  K  L  F  D  A  V  V  V  V  K  A  W  E  K  K  K  E  L  L  T  F  S  P  S  P  S  P  A  T  K  *  I  F  D  G  *  *  W  L  K  V  K  T  S  S  S  A  N  V  V  *  S  N  F  E  V  L  *  F  V  A  F  L  F  F  L  T  Y  F  E  F  S  C  V  L  C  D  A  I  I  N  E  *  H  M  Y  *  Y  V  I  I  D  K  L  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10323" stop="10832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHHRHYVSNKKLLYIVPLLPFFFIKKKKKKNPQSPMAKSTKILSSILILFFIFSLFSSSNALGGKLGGRTQIKNVKTNQEIQDLGKYCVEEHNRDLRHINGALSSLLSFSQVVEAEKQVVSGVKYYLKISAIVKSSSSPKLFDAVVVVKAWEKKKELLTFSPSPSPATK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10321" e_stop="11017"/>
            <exon e_start="11203" e_stop="11216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="0.998"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="10321" e_stop="11017" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="11018" i_stop="11202" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="11203" e_stop="11216" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10321" stop="10817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10408" stop="10994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10410" stop="11015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10410" stop="10998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10414" stop="11005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10414" stop="10998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10417" stop="10956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10419" stop="10831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10442" stop="10973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10462" stop="10993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10519" stop="11017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10559" stop="11017"/>
              <exon start="11203" stop="11216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCCACCACCGCCATTACGTGTCCAACAAAAAACTCCTATATATAGTCCCCCTTCTTCCTTTCTTCTTCATCAAAAAAAAAAAGAAAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA : AAAAATGTCAAAGA</gDNA_template>
            <first_frame> V  A  T  T  A  I  T  C  P  T  K  N  S  Y  I  *  S  P  F  F  L  S  S  S  S  K  K  K  R  K  K  I  P  N  L  Q  W  Q  N  P  Q  K  F  S  H  Q  S  S  F  S  S  S  F  S  V  Y  F  L  H  Q  T  H  *  A  E  S  S  A  E  E  H  K  S  K  T  *  K  Q  I  R  K  F  K  I  *  V  S  T  V  S  K  N  T  T  E  I  C  G  I  S  M  V  L  *  V  L  Y  *  V  F  L  K  L  L  K  Q  K  N  K  L  F  L  V  L  N  I  I  *  K  S  Q  L  L  L  N  H  L  A  H  Q  N  C  S  M  L  L  L  L  L  K  L  G  R  R  R  R  N  C  L  R  F  L  L  L  L  H  R  L  Q  S  E  F  S  M  V  D  S  G  *  K  L  K  L  L  V  V  L  M  L  F  N  L  I  L  K  Y  F  N  L  *  P  F  Y  F  F  *  P  I  L  S  S  L  V  Y  Y  V  M  Q  *  S  M  N  D  I  C  I  S  M  L  L  *  I   : K  K  C  Q  R </first_frame>
            <second_frame>  L  P  P  P  P  L  R  V  Q  Q  K  T  P  I  Y  S  P  P  S  S  F  L  L  H  Q  K  K  K  E  K  K  S  P  I  S  N  G  K  I  H  K  N  S  L  I  N  P  H  S  L  L  H  F  Q  S  I  F  F  I  K  R  I  R  R  K  A  R  R  K  N  T  N  Q  K  R  E  N  K  S  G  N  S  R  S  R  *  V  L  C  R  R  T  Q  Q  R  F  A  A  Y  Q  W  C  F  E  F  F  I  E  F  F  S  S  C  *  S  R  K  T  S  C  F  W  C  *  I  L  S  K  N  L  S  Y  C  *  I  I  *  L  T  K  I  V  R  C  C  C  C  C  *  S  L  G  E  E  E  G  I  A  Y  V  F  S  F  S  F  T  G  Y  K  V  N  F  R  W  L  I  V  A  K  S  *  N  F  *  *  C  *  C  C  L  I  *  F  *  S  T  L  I  C  S  L  F  I  F  F  N  L  F  *  V  L  L  C  T  M  *  C  N  N  Q  *  M  T  Y  V  L  V  C  Y  Y  R  *  :  K  N  V  K   </second_frame>
            <third_frame>   C  H  H  R  H  Y  V  S  N  K  K  L  L  Y  I  V  P  L  L  P  F  F  F  I  K  K  K  K  K  K  N  P  Q  S  P  M  A  K  S  T  K  I  L  S  S  I  L  I  L  F  F  I  F  S  L  F  S  S  S  N  A  L  G  G  K  L  G  G  R  T  Q  I  K  N  V  K  T  N  Q  E  I  Q  D  L  G  K  Y  C  V  E  E  H  N  R  D  L  R  H  I  N  G  A  L  S  S  L  L  S  F  S  Q  V  V  E  A  E  K  Q  V  V  S  G  V  K  Y  Y  L  K  I  S  A  I  V  K  S  S  S  S  P  K  L  F  D  A  V  V  V  V  K  A  W  E  K  K  K  E  L  L  T  F  S  P  S  P  S  P  A  T  K  *  I  F  D  G  *  *  W  L  K  V  K  T  S  S  S  A  N  V  V  *  S  N  F  E  V  L  *  F  V  A  F  L  F  F  L  T  Y  F  E  F  S  C  V  L  C  D  A  I  I  N  E  *  H  M  Y  *  Y  V  I  I  D  K :   K  M  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10323" stop="10832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHHRHYVSNKKLLYIVPLLPFFFIKKKKKKNPQSPMAKSTKILSSILILFFIFSLFSSSNALGGKLGGRTQIKNVKTNQEIQDLGKYCVEEHNRDLRHINGALSSLLSFSQVVEAEKQVVSGVKYYLKISAIVKSSSSPKLFDAVVVVKAWEKKKELLTFSPSPSPATK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17840" PGL_stop="14499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17840" e_stop="17778"/>
            <exon e_start="17664" e_stop="17588"/>
            <exon e_start="17513" e_stop="17397"/>
            <exon e_start="17276" e_stop="17192"/>
            <exon e_start="17099" e_stop="16932"/>
            <exon e_start="16381" e_stop="16271"/>
            <exon e_start="16182" e_stop="16096"/>
            <exon e_start="15817" e_stop="15690"/>
            <exon e_start="15606" e_stop="15524"/>
            <exon e_start="15426" e_stop="15321"/>
            <exon e_start="15224" e_stop="15078"/>
            <exon e_start="14924" e_stop="14804"/>
            <exon e_start="14729" e_stop="14499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.554" e_score="0.889"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.951" e_score="0.992"/>
          <exon-only e_score="0.831"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="17840" e_stop="17778" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.554">
            <gDNA_intron_boundary i_start="17777" i_stop="17665" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17664" e_stop="17588" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17587" i_stop="17514" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17513" e_stop="17397" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.921">
            <gDNA_intron_boundary i_start="17396" i_stop="17277" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17276" e_stop="17192" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17099" e_stop="16932" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16381" e_stop="16271" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.892">
            <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16182" e_stop="16096" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.990">
            <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15817" e_stop="15690" e_length="128"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15606" e_stop="15524" e_length="83"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.125">
            <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15426" e_stop="15321" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15224" e_stop="15078" e_length="147"/>
          </exon>
          <intron i_serial="11" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15077" i_stop="14925" i_length="153"/>
          </intron>
          <exon e_serial="12" e_score="0.992">
            <gDNA_exon_boundary e_start="14924" e_stop="14804" e_length="121"/>
          </exon>
          <intron i_serial="12" don_prob="0.895" acc_prob="0.951">
            <gDNA_intron_boundary i_start="14803" i_stop="14730" i_length="74"/>
          </intron>
          <exon e_serial="13" e_score="0.831">
            <gDNA_exon_boundary e_start="14729" e_stop="14499" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17840" stop="17778"/>
              <exon start="17664" stop="17588"/>
              <exon start="17513" stop="17397"/>
              <exon start="17276" stop="17192"/>
              <exon start="17099" stop="16932"/>
              <exon start="16381" stop="16295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17630" stop="17588"/>
              <exon start="17513" stop="17397"/>
              <exon start="17276" stop="17192"/>
              <exon start="17099" stop="16946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538224" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17492" stop="17397"/>
              <exon start="17276" stop="17192"/>
              <exon start="17099" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17267" stop="17192"/>
              <exon start="17099" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17056" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16162" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14804"/>
              <exon start="14729" stop="14618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16162" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15531" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14804"/>
              <exon start="14729" stop="14511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15332" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14804"/>
              <exon start="14729" stop="14499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423436" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGGGATAACCGGGAGAAGATGTTTATTGAAGTTGAGGGGATACTAAGAAGACAAATTAAG : ATGTCCATTATCCCAAGCGTTCAGCCTTTCCATGCAATTGCCTACCCTCTTGATCCAATGCTTGCTCTAGATATCAG : TTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGG : ATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAG : GTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAG : GGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAG : TTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA : AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG : GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCAC : ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACAC : GCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACTTGGTGCTGAGATGATTGTCAGCAG : TATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTCAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGG : GTGAGGAATCTGGAACGTTCTTACTTTAAGATGTGGAATCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCCAAGTGACCGAGAATGACTCAGAATTTCCTTTTGACCGCTAGATGTAGCAGGGAACATGGTTGTACATAAAACAAGAGAAGTTAAATTCCTATTTTTATATACAAGTATATAAATTACTACTGCATTTAGGTGTTTGTTCAAATGTGGTTCAAGTCTCA</gDNA_template>
            <first_frame> D  W  D  N  R  E  K  M  F  I  E  V  E  G  I  L  R  R  Q  I  K  :  M  S  I  I  P  S  V  Q  P  F  H  A  I  A  Y  P  L  D  P  M  L  A  L  D  I  S :   C  K  Y  A  Q  H  C  S  V  V  A  T  R  Y  S  L  P  P  F  T  H  P  P  P  L  P  I  K  G  G  G  R  I  N  R  L  R  V  G :   Y  V  S  S  D  F  G  N  H  P  L  S  H  L  M  G  S  V  F  G  M  H  D  K  E  N  V  E  :  V  F  C  Y  A  L  S  P  N  D  G  T  E  W  R  I  R  T  Q  T  E  A  E  H  F  I  D  V  S  S  L  T  S  D  V  I  A  R  M  I  N  E  D  Q  I  Q  I  L  I  N  L  N  G  Y  T  K  :  G  A  R  N  E  I  F  A  M  Q  P  A  P  I  Q  V  S  Y  M  G  F  P  G  T  T  G  A  T  Y  I  D  Y  L  V  T  D  E  :  F  V  S  P  M  K  Y  A  H  I  Y  S  E  K  L  V  H  L  P  H  C  Y  F  V  N  D  Y  K  Q  :  K  N  C  D  V  L  D  P  N  S  Q  L  K  R  S  D  Y  G  L  P  E  D  K  F  I  F  A  C  F  N  Q  L  Y  K  M  D  P  E  I  F  I  T  W :   C  N  I  L  K  R  V  P  N  S  A  L  W  L  L  R  F  P  A  A  G  E  M  R  L  R  A   : H  A  A  A  Q  G  L  Q  P  D  Q  I  I  F  T  D  V  A  M  K  Q  E  H  I  K  R  S  S  L  A  D  L  F  L  D  T :   P  L  C  N  A  H  T  T  G  T  D  V  L  W  A  G  L  P  M  V  T  L  P  L  E  K  M  A  T  R  V  A  G  S  L  C  L  A  T  G  L  G  A  E  M  I  V  S  S :   M  K  E  Y  E  E  K  A  V  S  L  A  L  N  R  P  K  L  Q  D  L  T  N  R  L  K  A  V  R  M  S  C  P  L  F  D  T  T  R  W  :  V  R  N  L  E  R  S  Y  F  K  M  W  N  L  Y  C  S  G  Q  H  P  Q  P  F  Q  V  T  E  N  D  S  E  F  P  F  D  R  *  M  *  Q  G  T  W  L  Y  I  K  Q  E  K  L  N  S  Y  F  Y  I  Q  V  Y  K  L  L  L  H  L  G  V  C  S  N  V  V  Q  V  S </first_frame>
            <second_frame>  I  G  I  T  G  R  R  C  L  L  K  L  R  G  Y  *  E  D  K  L  R :   C  P  L  S  Q  A  F  S  L  S  M  Q  L  P  T  L  L  I  Q  C  L  L  *  I  S   : V  A  S  M  P  S  T  A  L  W  *  Q  L  A  T  H  F  L  P  S  P  I  H  R  R  C  Q  L  K  E  V  A  G  S  T  G  *  G  L   : D  M  *  A  V  I  L  A  T  I  H  Y  H  I  *  W  V  P  F  L  G  C  M  T  K  R  T  L  R :   C  S  A  M  L  *  V  Q  M  M  V  Q  S  G  G  F  A  L  R  Q  K  L  S  I  L  L  M  Y  R  P  *  H  L  M  *  *  Q  G  *  L  M  R  I  K  Y  R  Y  L  S  I  S  M  V  I  P  R :   G  Q  E  T  R  Y  S  P  C  S  Q  L  Q  S  R  F  H  T  W  V  S  L  E  P  Q  E  Q  H  T  *  I  I  W  L  Q  M  S :   S  F  H  L  *  S  M  H  I  F  T  Q  R  S  L  Y  I  S  L  I  A  I  L  S  T  I  I  S  K :   K  T  V  T  C  *  I  Q  T  A  N  *  S  A  Q  I  M  G  C  R  R  I  N  S  Y  L  H  V  L  I  S  F  T  R  W  I  L  R  F  L  L  H   : G  A  I  S  L  S  V  Y  Q  T  V  L  F  G  F  S  D  F  Q  L  Q  E  R  *  G  S  A  H  :  M  L  L  P  K  A  C  N  Q  T  K  L  F  S  Q  M  L  Q  *  N  K  S  T  S  S  A  A  P  W  L  I  F  S  W  T   : R  H  C  A  M  H  I  P  Q  E  L  M  F  F  G  L  V  Y  Q  W  *  P  F  P  L  R  R  W  L  L  E  L  L  A  L  C  V  W  R  Q  D  L  V  L  R  *  L  S  A   : V  *  R  N  M  R  R  R  R  C  H  W  H  S  I  V  Q  S  S  K  I  S  P  I  D  S  R  L  Y  E  *  V  A  L  Y  L  I  Q  H  V  G :   *  G  I  W  N  V  L  T  L  R  C  G  I  S  I  A  P  A  S  I  L  S  P  S  K  *  P  R  M  T  Q  N  F  L  L  T  A  R  C  S  R  E  H  G  C  T  *  N  K  R  S  *  I  P  I  F  I  Y  K  Y  I  N  Y  Y  C  I  *  V  F  V  Q  M  W  F  K  S   </second_frame>
            <third_frame>   L  G  *  P  G  E  D  V  Y  *  S  *  G  D  T  K  K  T  N  *   : D  V  H  Y  P  K  R  S  A  F  P  C  N  C  L  P  S  *  S  N  A  C  S  R  Y  Q  :  L  Q  V  C  P  A  L  L  C  G  S  N  S  L  L  T  S  S  L  H  P  S  T  A  A  A  N  *  R  R  W  Q  D  Q  Q  A  E  G  W  :  I  C  E  Q  *  F  W  Q  P  S  T  I  T  S  N  G  F  R  F  W  D  A  *  Q  R  E  R  *   : G  V  L  L  C  F  K  S  K  *  W  Y  R  V  E  D  S  H  S  D  R  S  *  A  F  Y  *  C  I  V  L  D  I  *  C  D  S  K  D  D  *  *  G  S  N  T  D  T  Y  Q  S  Q  W  L  Y  Q   : G  G  K  K  R  D  I  R  H  A  A  S  S  N  P  G  F  I  H  G  F  P  W  N  H  R  S  N  I  H  R  L  F  G  Y  R  *   : V  R  F  T  Y  E  V  C  T  Y  L  L  R  E  A  C  T  S  P  S  L  L  F  C  Q  R  L  *  A   : K  K  L  *  R  A  R  S  K  Q  P  T  E  A  L  R  L  W  A  A  G  G  *  I  H  I  C  M  F  *  S  A  L  Q  D  G  S  *  D  F  Y  Y  M  :  V  Q  Y  P  *  A  C  T  K  Q  C  S  L  A  S  Q  I  S  S  C  R  R  D  E  A  P  R  T :   C  C  C  P  R  P  A  T  R  P  N  Y  F  H  R  C  C  N  E  T  R  A  H  Q  A  Q  L  L  G  *  S  F  L  G  H  :  A  T  V  Q  C  T  Y  H  R  N  *  C  S  L  G  W  S  T  N  G  N  P  S  P  *  E  D  G  Y  *  S  C  W  L  S  V  F  G  D  R  T  W  C  *  D  D  C  Q  Q  :  Y  E  G  I  *  G  E  G  G  V  T  G  T  Q  S  S  K  A  P  R  S  H  Q  *  T  Q  G  C  T  N  E  L  P  F  I  *  Y  N  T  L   : G  E  E  S  G  T  F  L  L  *  D  V  E  S  L  L  L  R  P  A  S  S  A  L  P  S  D  R  E  *  L  R  I  S  F  *  P  L  D  V  A  G  N  M  V  V  H  K  T  R  E  V  K  F  L  F  L  Y  T  S  I  *  I  T  T  A  F  R  C  L  F  K  C  G  S  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17840" stop="17778"/>
                    <exon start="17664" stop="17588"/>
                    <exon start="17513" stop="17397"/>
                    <exon start="17276" stop="17192"/>
                    <exon start="17099" stop="16932"/>
                    <exon start="16381" stop="16271"/>
                    <exon start="16182" stop="16096"/>
                    <exon start="15817" stop="15690"/>
                    <exon start="15606" stop="15524"/>
                    <exon start="15426" stop="15321"/>
                    <exon start="15224" stop="15078"/>
                    <exon start="14924" stop="14804"/>
                    <exon start="14729" stop="14616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1404</number_coding_nucleotides>
                  <number_encoded_amino_acids>468</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DWDNREKMFIEVEGILRRQIKMSIIPSVQPFHAIAYPLDPMLALDISCKYAQHCSVVATRYSLPPFTHPPPLPIKGGGRINRLRVGYVSSDFGNHPLSHLMGSVFGMHDKENVEVFCYALSPNDGTEWRIRTQTEAEHFIDVSSLTSDVIARMINEDQIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPMKYAHIYSEKLVHLPHCYFVNDYKQKNCDVLDPNSQLKRSDYGLPEDKFIFACFNQLYKMDPEIFITWCNILKRVPNSALWLLRFPAAGEMRLRAHAAAQGLQPDQIIFTDVAMKQEHIKRSSLADLFLDTPLCNAHTTGTDVLWAGLPMVTLPLEKMATRVAGSLCLATGLGAEMIVSSMKEYEEKAVSLALNRPKLQDLTNRLKAVRMSCPLFDTTRWVRNLERSYFKMWNLYCSGQHPQPFQVTENDSEFPFDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17518" e_stop="17397"/>
            <exon e_start="17276" e_stop="17192"/>
            <exon e_start="17099" e_stop="16932"/>
            <exon e_start="16381" e_stop="16271"/>
            <exon e_start="16182" e_stop="16096"/>
            <exon e_start="15817" e_stop="15690"/>
            <exon e_start="15606" e_stop="15524"/>
            <exon e_start="15426" e_stop="15321"/>
            <exon e_start="15224" e_stop="15078"/>
            <exon e_start="14924" e_stop="14804"/>
            <exon e_start="14729" e_stop="14499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.921" e_score="0.969"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.951" e_score="0.992"/>
          <exon-only e_score="0.831"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="17518" e_stop="17397" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.921">
            <gDNA_intron_boundary i_start="17396" i_stop="17277" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="17276" e_stop="17192" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17191" i_stop="17100" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17099" e_stop="16932" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16931" i_stop="16382" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16381" e_stop="16271" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.892">
            <gDNA_intron_boundary i_start="16270" i_stop="16183" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16182" e_stop="16096" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.990">
            <gDNA_intron_boundary i_start="16095" i_stop="15818" i_length="278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15817" e_stop="15690" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="15689" i_stop="15607" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15606" e_stop="15524" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.125">
            <gDNA_intron_boundary i_start="15523" i_stop="15427" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15426" e_stop="15321" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15320" i_stop="15225" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15224" e_stop="15078" e_length="147"/>
          </exon>
          <intron i_serial="9" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15077" i_stop="14925" i_length="153"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="14924" e_stop="14804" e_length="121"/>
          </exon>
          <intron i_serial="10" don_prob="0.895" acc_prob="0.951">
            <gDNA_intron_boundary i_start="14803" i_stop="14730" i_length="74"/>
          </intron>
          <exon e_serial="11" e_score="0.831">
            <gDNA_exon_boundary e_start="14729" e_stop="14499" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17518" stop="17397"/>
              <exon start="17276" stop="17192"/>
              <exon start="17099" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17492" stop="17397"/>
              <exon start="17276" stop="17192"/>
              <exon start="17099" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17267" stop="17192"/>
              <exon start="17099" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17056" stop="16932"/>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16381" stop="16271"/>
              <exon start="16182" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16162" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14804"/>
              <exon start="14729" stop="14618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16162" stop="16096"/>
              <exon start="15817" stop="15690"/>
              <exon start="15606" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15531" stop="15524"/>
              <exon start="15426" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14804"/>
              <exon start="14729" stop="14511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15332" stop="15321"/>
              <exon start="15224" stop="15078"/>
              <exon start="14924" stop="14804"/>
              <exon start="14729" stop="14499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423436" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGTTGCAAGTATGCCCAGCACTGCTCTGTGGTAGCAACTCGCTACTCACTTCCTCCCTTCACCCATCCACCGCCGCTGCCAATTAAAGGAGGTGGCAGGATCAACAGGCTGAGGGTTGG : ATATGTGAGCAGTGATTTTGGCAACCATCCACTATCACATCTAATGGGTTCCGTTTTTGGGATGCATGACAAAGAGAACGTTGAG : GTGTTCTGCTATGCTTTAAGTCCAAATGATGGTACAGAGTGGAGGATTCGCACTCAGACAGAAGCTGAGCATTTTATTGATGTATCGTCCTTGACATCTGATGTGATAGCAAGGATGATTAATGAGGATCAAATACAGATACTTATCAATCTCAATGGTTATACCAAG : GGGGCAAGAAACGAGATATTCGCCATGCAGCCAGCTCCAATCCAGGTTTCATACATGGGTTTCCCTGGAACCACAGGAGCAACATACATAGATTATTTGGTTACAGATGAG : TTCGTTTCACCTATGAAGTATGCACATATTTACTCAGAGAAGCTTGTACATCTCCCTCATTGCTATTTTGTCAACGATTATAAGCAA : AAAAACTGTGACGTGCTAGATCCAAACAGCCAACTGAAGCGCTCAGATTATGGGCTGCCGGAGGATAAATTCATATTTGCATGTTTTAATCAGCTTTACAAGATGGATCCTGAGATTTTTATTACATG : GTGCAATATCCTTAAGCGTGTACCAAACAGTGCTCTTTGGCTTCTCAGATTTCCAGCTGCAGGAGAGATGAGGCTCCGCGCAC : ATGCTGCTGCCCAAGGCCTGCAACCAGACCAAATTATTTTCACAGATGTTGCAATGAAACAAGAGCACATCAAGCGCAGCTCCTTGGCTGATCTTTTCTTGGACAC : GCCACTGTGCAATGCACATACCACAGGAACTGATGTTCTTTGGGCTGGTCTACCAATGGTAACCCTTCCCCTTGAGAAGATGGCTACTAGAGTTGCTGGCTCTCTGTGTTTGGCGACAGGACTTGGTGCTGAGATGATTGTCAGCAG : TATGAAGGAATATGAGGAGAAGGCGGTGTCACTGGCACTCAATCGTCCAAAGCTCCAAGATCTCACCAATAGACTCAAGGCTGTACGAATGAGTTGCCCTTTATTTGATACAACACGTTGG : GTGAGGAATCTGGAACGTTCTTACTTTAAGATGTGGAATCTCTATTGCTCCGGCCAGCATCCTCAGCCCTTCCAAGTGACCGAGAATGACTCAGAATTTCCTTTTGACCGCTAGATGTAGCAGGGAACATGGTTGTACATAAAACAAGAGAAGTTAAATTCCTATTTTTATATACAAGTATATAAATTACTACTGCATTTAGGTGTTTGTTCAAATGTGGTTCAAGTCTCA</gDNA_template>
            <first_frame> *  S  C  K  Y  A  Q  H  C  S  V  V  A  T  R  Y  S  L  P  P  F  T  H  P  P  P  L  P  I  K  G  G  G  R  I  N  R  L  R  V  G :   Y  V  S  S  D  F  G  N  H  P  L  S  H  L  M  G  S  V  F  G  M  H  D  K  E  N  V  E  :  V  F  C  Y  A  L  S  P  N  D  G  T  E  W  R  I  R  T  Q  T  E  A  E  H  F  I  D  V  S  S  L  T  S  D  V  I  A  R  M  I  N  E  D  Q  I  Q  I  L  I  N  L  N  G  Y  T  K  :  G  A  R  N  E  I  F  A  M  Q  P  A  P  I  Q  V  S  Y  M  G  F  P  G  T  T  G  A  T  Y  I  D  Y  L  V  T  D  E  :  F  V  S  P  M  K  Y  A  H  I  Y  S  E  K  L  V  H  L  P  H  C  Y  F  V  N  D  Y  K  Q  :  K  N  C  D  V  L  D  P  N  S  Q  L  K  R  S  D  Y  G  L  P  E  D  K  F  I  F  A  C  F  N  Q  L  Y  K  M  D  P  E  I  F  I  T  W :   C  N  I  L  K  R  V  P  N  S  A  L  W  L  L  R  F  P  A  A  G  E  M  R  L  R  A   : H  A  A  A  Q  G  L  Q  P  D  Q  I  I  F  T  D  V  A  M  K  Q  E  H  I  K  R  S  S  L  A  D  L  F  L  D  T :   P  L  C  N  A  H  T  T  G  T  D  V  L  W  A  G  L  P  M  V  T  L  P  L  E  K  M  A  T  R  V  A  G  S  L  C  L  A  T  G  L  G  A  E  M  I  V  S  S :   M  K  E  Y  E  E  K  A  V  S  L  A  L  N  R  P  K  L  Q  D  L  T  N  R  L  K  A  V  R  M  S  C  P  L  F  D  T  T  R  W  :  V  R  N  L  E  R  S  Y  F  K  M  W  N  L  Y  C  S  G  Q  H  P  Q  P  F  Q  V  T  E  N  D  S  E  F  P  F  D  R  *  M  *  Q  G  T  W  L  Y  I  K  Q  E  K  L  N  S  Y  F  Y  I  Q  V  Y  K  L  L  L  H  L  G  V  C  S  N  V  V  Q  V  S </first_frame>
            <second_frame>  K  V  A  S  M  P  S  T  A  L  W  *  Q  L  A  T  H  F  L  P  S  P  I  H  R  R  C  Q  L  K  E  V  A  G  S  T  G  *  G  L   : D  M  *  A  V  I  L  A  T  I  H  Y  H  I  *  W  V  P  F  L  G  C  M  T  K  R  T  L  R :   C  S  A  M  L  *  V  Q  M  M  V  Q  S  G  G  F  A  L  R  Q  K  L  S  I  L  L  M  Y  R  P  *  H  L  M  *  *  Q  G  *  L  M  R  I  K  Y  R  Y  L  S  I  S  M  V  I  P  R :   G  Q  E  T  R  Y  S  P  C  S  Q  L  Q  S  R  F  H  T  W  V  S  L  E  P  Q  E  Q  H  T  *  I  I  W  L  Q  M  S :   S  F  H  L  *  S  M  H  I  F  T  Q  R  S  L  Y  I  S  L  I  A  I  L  S  T  I  I  S  K :   K  T  V  T  C  *  I  Q  T  A  N  *  S  A  Q  I  M  G  C  R  R  I  N  S  Y  L  H  V  L  I  S  F  T  R  W  I  L  R  F  L  L  H   : G  A  I  S  L  S  V  Y  Q  T  V  L  F  G  F  S  D  F  Q  L  Q  E  R  *  G  S  A  H  :  M  L  L  P  K  A  C  N  Q  T  K  L  F  S  Q  M  L  Q  *  N  K  S  T  S  S  A  A  P  W  L  I  F  S  W  T   : R  H  C  A  M  H  I  P  Q  E  L  M  F  F  G  L  V  Y  Q  W  *  P  F  P  L  R  R  W  L  L  E  L  L  A  L  C  V  W  R  Q  D  L  V  L  R  *  L  S  A   : V  *  R  N  M  R  R  R  R  C  H  W  H  S  I  V  Q  S  S  K  I  S  P  I  D  S  R  L  Y  E  *  V  A  L  Y  L  I  Q  H  V  G :   *  G  I  W  N  V  L  T  L  R  C  G  I  S  I  A  P  A  S  I  L  S  P  S  K  *  P  R  M  T  Q  N  F  L  L  T  A  R  C  S  R  E  H  G  C  T  *  N  K  R  S  *  I  P  I  F  I  Y  K  Y  I  N  Y  Y  C  I  *  V  F  V  Q  M  W  F  K  S   </second_frame>
            <third_frame>   K  L  Q  V  C  P  A  L  L  C  G  S  N  S  L  L  T  S  S  L  H  P  S  T  A  A  A  N  *  R  R  W  Q  D  Q  Q  A  E  G  W  :  I  C  E  Q  *  F  W  Q  P  S  T  I  T  S  N  G  F  R  F  W  D  A  *  Q  R  E  R  *   : G  V  L  L  C  F  K  S  K  *  W  Y  R  V  E  D  S  H  S  D  R  S  *  A  F  Y  *  C  I  V  L  D  I  *  C  D  S  K  D  D  *  *  G  S  N  T  D  T  Y  Q  S  Q  W  L  Y  Q   : G  G  K  K  R  D  I  R  H  A  A  S  S  N  P  G  F  I  H  G  F  P  W  N  H  R  S  N  I  H  R  L  F  G  Y  R  *   : V  R  F  T  Y  E  V  C  T  Y  L  L  R  E  A  C  T  S  P  S  L  L  F  C  Q  R  L  *  A   : K  K  L  *  R  A  R  S  K  Q  P  T  E  A  L  R  L  W  A  A  G  G  *  I  H  I  C  M  F  *  S  A  L  Q  D  G  S  *  D  F  Y  Y  M  :  V  Q  Y  P  *  A  C  T  K  Q  C  S  L  A  S  Q  I  S  S  C  R  R  D  E  A  P  R  T :   C  C  C  P  R  P  A  T  R  P  N  Y  F  H  R  C  C  N  E  T  R  A  H  Q  A  Q  L  L  G  *  S  F  L  G  H  :  A  T  V  Q  C  T  Y  H  R  N  *  C  S  L  G  W  S  T  N  G  N  P  S  P  *  E  D  G  Y  *  S  C  W  L  S  V  F  G  D  R  T  W  C  *  D  D  C  Q  Q  :  Y  E  G  I  *  G  E  G  G  V  T  G  T  Q  S  S  K  A  P  R  S  H  Q  *  T  Q  G  C  T  N  E  L  P  F  I  *  Y  N  T  L   : G  E  E  S  G  T  F  L  L  *  D  V  E  S  L  L  L  R  P  A  S  S  A  L  P  S  D  R  E  *  L  R  I  S  F  *  P  L  D  V  A  G  N  M  V  V  H  K  T  R  E  V  K  F  L  F  L  Y  T  S  I  *  I  T  T  A  F  R  C  L  F  K  C  G  S  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17515" stop="17397"/>
                    <exon start="17276" stop="17192"/>
                    <exon start="17099" stop="16932"/>
                    <exon start="16381" stop="16271"/>
                    <exon start="16182" stop="16096"/>
                    <exon start="15817" stop="15690"/>
                    <exon start="15606" stop="15524"/>
                    <exon start="15426" stop="15321"/>
                    <exon start="15224" stop="15078"/>
                    <exon start="14924" stop="14804"/>
                    <exon start="14729" stop="14616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCKYAQHCSVVATRYSLPPFTHPPPLPIKGGGRINRLRVGYVSSDFGNHPLSHLMGSVFGMHDKENVEVFCYALSPNDGTEWRIRTQTEAEHFIDVSSLTSDVIARMINEDQIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPMKYAHIYSEKLVHLPHCYFVNDYKQKNCDVLDPNSQLKRSDYGLPEDKFIFACFNQLYKMDPEIFITWCNILKRVPNSALWLLRFPAAGEMRLRAHAAAQGLQPDQIIFTDVAMKQEHIKRSSLADLFLDTPLCNAHTTGTDVLWAGLPMVTLPLEKMATRVAGSLCLATGLGAEMIVSSMKEYEEKAVSLALNRPKLQDLTNRLKAVRMSCPLFDTTRWVRNLERSYFKMWNLYCSGQHPQPFQVTENDSEFPFDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20925" PGL_stop="19009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20925" e_stop="20908"/>
            <exon e_start="20210" e_stop="20091"/>
            <exon e_start="19987" e_stop="19925"/>
            <exon e_start="19829" e_stop="19751"/>
            <exon e_start="19553" e_stop="19444"/>
            <exon e_start="19347" e_stop="19294"/>
            <exon e_start="19204" e_stop="19137"/>
            <exon e_start="19054" e_stop="19009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.731" e_score="0.958"/>
          <exon-intron don_prob="0.951" acc_prob="0.750" e_score="0.984"/>
          <exon-intron don_prob="0.964" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.965" acc_prob="0.974" e_score="0.981"/>
          <exon-intron don_prob="0.644" acc_prob="0.976" e_score="0.897"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20925" e_stop="20908" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20907" i_stop="20211" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="20210" e_stop="20091" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.731">
            <gDNA_intron_boundary i_start="20090" i_stop="19988" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="19987" e_stop="19925" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.750">
            <gDNA_intron_boundary i_start="19924" i_stop="19830" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19829" e_stop="19751" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.895">
            <gDNA_intron_boundary i_start="19750" i_stop="19554" i_length="197"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="19553" e_stop="19444" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19443" i_stop="19348" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="19347" e_stop="19294" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.974">
            <gDNA_intron_boundary i_start="19293" i_stop="19205" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="0.897">
            <gDNA_exon_boundary e_start="19204" e_stop="19137" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.644" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19136" i_stop="19055" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="19054" e_stop="19009" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20925" stop="20908"/>
              <exon start="20210" stop="20091"/>
              <exon start="19987" stop="19925"/>
              <exon start="19829" stop="19751"/>
              <exon start="19553" stop="19444"/>
              <exon start="19347" stop="19294"/>
              <exon start="19204" stop="19137"/>
              <exon start="19054" stop="19009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20925" stop="20908"/>
              <exon start="20210" stop="20091"/>
              <exon start="19987" stop="19925"/>
              <exon start="19829" stop="19751"/>
              <exon start="19553" stop="19444"/>
              <exon start="19347" stop="19294"/>
              <exon start="19204" stop="19137"/>
              <exon start="19054" stop="19035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGGTTTAGTCCAAGAG : GCGTACAATTGTTATGTTGAAGCACTGCGTATACAGCCTGCATTTGCCATAGCATGGTCCAACCTTGCTGGCCTTTTCATGGAGGCAGGCGATCTTAACAGGGCTTTGCAGTACTACAAG : GAAGTGATCAAGCTGAAACCGAACTTCTCAGATGCATATCTGAACCTAGGAAATGTATACAAG : GCTTTGGGAATGCCCCAGGAGGCCATAGTGTGTTATCAGCGTGCGCTCCAAGTACGACCAGACTATGCCATGGCTTTTG : GCAACTTAGCTAGTGTGTACTATGAACAAGGAAATATGGAAATGGCAATATTTAACTACAGGAGAGCTATTACATGTGATACTGAATTCTTTGAGGCATATAACAATCTG : GGTAATGCTCTAAAAGATGCTGGTAGAGTGGAGGAAGCAATTCATTGCTATCGT : CAATGCCTCTCTCTTCAACCTAACCACCCACAAGCGCTTTCTAATATAGGGATCATTTATATGCAGTG : GAACATGATGAGTGCGGCTGCACAATGTTTTAAAGCGACTTTAGCT</gDNA_template>
            <first_frame> Q  G  L  V  Q  E  :  A  Y  N  C  Y  V  E  A  L  R  I  Q  P  A  F  A  I  A  W  S  N  L  A  G  L  F  M  E  A  G  D  L  N  R  A  L  Q  Y  Y  K  :  E  V  I  K  L  K  P  N  F  S  D  A  Y  L  N  L  G  N  V  Y  K  :  A  L  G  M  P  Q  E  A  I  V  C  Y  Q  R  A  L  Q  V  R  P  D  Y  A  M  A  F   : G  N  L  A  S  V  Y  Y  E  Q  G  N  M  E  M  A  I  F  N  Y  R  R  A  I  T  C  D  T  E  F  F  E  A  Y  N  N  L  :  G  N  A  L  K  D  A  G  R  V  E  E  A  I  H  C  Y  R  :  Q  C  L  S  L  Q  P  N  H  P  Q  A  L  S  N  I  G  I  I  Y  M  Q  W :   N  M  M  S  A  A  A  Q  C  F  K  A  T  L  A </first_frame>
            <second_frame>  K  V  *  S  K  R :   R  T  I  V  M  L  K  H  C  V  Y  S  L  H  L  P  *  H  G  P  T  L  L  A  F  S  W  R  Q  A  I  L  T  G  L  C  S  T  T  R :   K  *  S  S  *  N  R  T  S  Q  M  H  I  *  T  *  E  M  Y  T  R :   L  W  E  C  P  R  R  P  *  C  V  I  S  V  R  S  K  Y  D  Q  T  M  P  W  L  L  :  A  T  *  L  V  C  T  M  N  K  E  I  W  K  W  Q  Y  L  T  T  G  E  L  L  H  V  I  L  N  S  L  R  H  I  T  I  W :   V  M  L  *  K  M  L  V  E  W  R  K  Q  F  I  A  I  V :   N  A  S  L  F  N  L  T  T  H  K  R  F  L  I  *  G  S  F  I  C  S   : G  T  *  *  V  R  L  H  N  V  L  K  R  L  *   </second_frame>
            <third_frame>   R  F  S  P  R   : G  V  Q  L  L  C  *  S  T  A  Y  T  A  C  I  C  H  S  M  V  Q  P  C  W  P  F  H  G  G  R  R  S  *  Q  G  F  A  V  L  Q   : G  S  D  Q  A  E  T  E  L  L  R  C  I  S  E  P  R  K  C  I  Q   : G  F  G  N  A  P  G  G  H  S  V  L  S  A  C  A  P  S  T  T  R  L  C  H  G  F  W :   Q  L  S  *  C  V  L  *  T  R  K  Y  G  N  G  N  I  *  L  Q  E  S  Y  Y  M  *  Y  *  I  L  *  G  I  *  Q  S   : G  *  C  S  K  R  C  W  *  S  G  G  S  N  S  L  L  S   : S  M  P  L  S  S  T  *  P  P  T  S  A  F  *  Y  R  D  H  L  Y  A  V  :  E  H  D  E  C  G  C  T  M  F  *  S  D  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20925" stop="20908"/>
                    <exon start="20210" stop="20091"/>
                    <exon start="19987" stop="19925"/>
                    <exon start="19829" stop="19751"/>
                    <exon start="19553" stop="19444"/>
                    <exon start="19347" stop="19294"/>
                    <exon start="19204" stop="19137"/>
                    <exon start="19054" stop="19009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGLVQEAYNCYVEALRIQPAFAIAWSNLAGLFMEAGDLNRALQYYKEVIKLKPNFSDAYLNLGNVYKALGMPQEAIVCYQRALQVRPDYAMAFGNLASVYYEQGNMEMAIFNYRRAITCDTEFFEAYNNLGNALKDAGRVEEAIHCYRQCLSLQPNHPQALSNIGIIYMQWNMMSAAAQCFKATLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="22516" PGL_stop="22011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22516" e_stop="22011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="22516" e_stop="22011" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22516" stop="22011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTTTGATATGTGTATCGCAAAAAATGAAGAAGCCCTAAGTATCGAGCCACATTTTGCTGAGTGCTATGGAAATATGGCGAATGCTTGGAAGGTATGGTTGTACTAACTCAGTAACTCATCTAGAAGCTGCTTCTTCTGGTTTTGGAATTGGGCACTGATGAAGTTCTAATGGTGCAGGAAAAAGGCAATATTGATGTTGCAATACGCTATTATTTAATTGCAATTGAGGTTTGTCACTCAGCCTCTTGCTTTCAGAATGAGTCACCTGGAAAGAACTTTTGAGGACTTCTGGAATTTTGGAAGCTTGCTTAATTATCTGTCTGGCTGTTCAATTAAAGTTGTGTCGTCCTGTGGTTTTTTTAATGATATTTTAATTATAACCATATATATGGGTTGCTGAAGACTTCAAATTGGAGTAATATCACAGAGAATAGATGAGATAGTTCAGATCCAAGGCATTTTTCCAGTTCAGATCTGAATTATTAAAGCGGATATTGAAACTG</gDNA_template>
            <first_frame> *  F  *  Y  V  Y  R  K  K  *  R  S  P  K  Y  R  A  T  F  C  *  V  L  W  K  Y  G  E  C  L  E  G  M  V  V  L  T  Q  *  L  I  *  K  L  L  L  L  V  L  E  L  G  T  D  E  V  L  M  V  Q  E  K  G  N  I  D  V  A  I  R  Y  Y  L  I  A  I  E  V  C  H  S  A  S  C  F  Q  N  E  S  P  G  K  N  F  *  G  L  L  E  F  W  K  L  A  *  L  S  V  W  L  F  N  *  S  C  V  V  L  W  F  F  *  *  Y  F  N  Y  N  H  I  Y  G  L  L  K  T  S  N  W  S  N  I  T  E  N  R  *  D  S  S  D  P  R  H  F  S  S  S  D  L  N  Y  *  S  G  Y  *  N   </first_frame>
            <second_frame>  D  F  D  M  C  I  A  K  N  E  E  A  L  S  I  E  P  H  F  A  E  C  Y  G  N  M  A  N  A  W  K  V  W  L  Y  *  L  S  N  S  S  R  S  C  F  F  W  F  W  N  W  A  L  M  K  F  *  W  C  R  K  K  A  I  L  M  L  Q  Y  A  I  I  *  L  Q  L  R  F  V  T  Q  P  L  A  F  R  M  S  H  L  E  R  T  F  E  D  F  W  N  F  G  S  L  L  N  Y  L  S  G  C  S  I  K  V  V  S  S  C  G  F  F  N  D  I  L  I  I  T  I  Y  M  G  C  *  R  L  Q  I  G  V  I  S  Q  R  I  D  E  I  V  Q  I  Q  G  I  F  P  V  Q  I  *  I  I  K  A  D  I  E  T  </second_frame>
            <third_frame>   I  L  I  C  V  S  Q  K  M  K  K  P  *  V  S  S  H  I  L  L  S  A  M  E  I  W  R  M  L  G  R  Y  G  C  T  N  S  V  T  H  L  E  A  A  S  S  G  F  G  I  G  H  *  *  S  S  N  G  A  G  K  R  Q  Y  *  C  C  N  T  L  L  F  N  C  N  *  G  L  S  L  S  L  L  L  S  E  *  V  T  W  K  E  L  L  R  T  S  G  I  L  E  A  C  L  I  I  C  L  A  V  Q  L  K  L  C  R  P  V  V  F  L  M  I  F  *  L  *  P  Y  I  W  V  A  E  D  F  K  L  E  *  Y  H  R  E  *  M  R  *  F  R  S  K  A  F  F  Q  F  R  S  E  L  L  K  R  I  L  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLf0060H24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32006" PGL_stop="39022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32006" e_stop="32162"/>
            <exon e_start="32241" e_stop="32385"/>
            <exon e_start="33314" e_stop="33388"/>
            <exon e_start="34087" e_stop="34176"/>
            <exon e_start="34474" e_stop="34553"/>
            <exon e_start="35146" e_stop="35215"/>
            <exon e_start="35330" e_stop="35415"/>
            <exon e_start="36606" e_stop="36672"/>
            <exon e_start="36885" e_stop="36980"/>
            <exon e_start="37699" e_stop="37798"/>
            <exon e_start="37950" e_stop="37996"/>
            <exon e_start="38080" e_stop="38163"/>
            <exon e_start="38264" e_stop="38317"/>
            <exon e_start="38922" e_stop="39022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.283" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.418" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32006" e_stop="32162" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32241" e_stop="32385" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33314" e_stop="33388" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34087" e_stop="34176" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34474" e_stop="34553" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.781" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34554" i_stop="35145" i_length="592"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35146" e_stop="35215" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.283" acc_prob="0.911">
            <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35330" e_stop="35415" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.914" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35416" i_stop="36605" i_length="1190"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36606" e_stop="36672" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.982">
            <gDNA_intron_boundary i_start="36673" i_stop="36884" i_length="212"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36885" e_stop="36980" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36981" i_stop="37698" i_length="718"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37699" e_stop="37798" e_length="100"/>
          </exon>
          <intron i_serial="10" don_prob="0.894" acc_prob="0.975">
            <gDNA_intron_boundary i_start="37799" i_stop="37949" i_length="151"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37950" e_stop="37996" e_length="47"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.862">
            <gDNA_intron_boundary i_start="37997" i_stop="38079" i_length="83"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="38080" e_stop="38163" e_length="84"/>
          </exon>
          <intron i_serial="12" don_prob="0.418" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38164" i_stop="38263" i_length="100"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="38264" e_stop="38317" e_length="54"/>
          </exon>
          <intron i_serial="13" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38318" i_stop="38921" i_length="604"/>
          </intron>
          <exon e_serial="14" e_score="0.970">
            <gDNA_exon_boundary e_start="38922" e_stop="39022" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32006" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32006" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32036" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32039" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32040" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35193" stop="35215"/>
              <exon start="35330" stop="35415"/>
              <exon start="36606" stop="36672"/>
              <exon start="36885" stop="36980"/>
              <exon start="37699" stop="37798"/>
              <exon start="37950" stop="37996"/>
              <exon start="38080" stop="38163"/>
              <exon start="38264" stop="38317"/>
              <exon start="38922" stop="39022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37702" stop="37798"/>
              <exon start="37950" stop="37996"/>
              <exon start="38080" stop="38159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTTCTTCAGTCTGAATAATTACAGTAGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG : ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG : TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG : GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG : GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAG : TGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAG : ATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACGAG : AATTTGCAGAAGACGACGGGAGGAGGAGCAAGGACCAAGAAAAGAACCTGCTATTCTGTCAGTTGAG : GGTAGGGGATTTAATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGATTACGTTCAGTCTGCTGTTTCAACAGTGATGTCGATCCATGACCAG : GAGCGGATGGGAGATATCCTGGTGTTTCTCACTGGTCAAGATGATATTGATACTGCAATACAATTGCTCACTGAAGAAGCCCAAAGTAGTGGCAAGCAAG : GACTGGTTTCTGTGCCACTATACTCGGGACTTCCTCGAGCAGATCAG : GACCTTGTGTTTTCCCCTACTCCCAGAGGAAAGAGAAAAGTGATATTTTCCACAAATATTGCTGAGACGTCATTGACTCTAGAA : GGTATTGTCTATGTTGTTGATAGCGGGTTCTCAAAACAACGTTTCTACAATCCG : ATTTCAGATATTGAGAACTTGGTAGTGGCACCAATATCAAAGGCATCTGCTCGACAAAGGGCTGGTAGAGCTGGAAGAGTTCGACCAGGAAAGTGTTTTAG</gDNA_template>
            <first_frame> F  F  F  F  S  L  N  N  Y  S  S  N  Q  A  L  I  L  Q  K  C  H  N  F  G  N  Q  E  L  N  G  P  V  L  *  M  M  K  R  V  V  F  F  S  M  L  H  L  P  P  L  P  L   : D  L  G  M  G  V  L  R  S  K  G  R  G  C  L  C  I  S  T  K  L  L  F  F  T  Q  W  R  L  M  L  L  P  S  L  L  E  K  L  E  V  E  K  Q  L  K  F  L  S :   T  *  K  K  L  V  G  L  R  E  G  E  *  L  L  V  P  N  Q  G  D  W  Q  S  R :   Q  L  L  Q  E  L  L  K  K  W  M  L  N  L  V  R  K  L  V  I  L  F  D  L  K  I  S  R  M  R :   N  *  L  G  S  N  F  L  L  M  G  F  C  *  G  K  *  W  M  I  L  Y  *  A  S  I   : V  *  L  W  *  M  K  L  M  K  G  L  S  R  R  T  S  Y  W  D  Y  *  K  R :   F  K  S  V  G  L  S  C  V  L  *  Y  H  Q  L  R  L  K  Q  N  Q  W  L  L  S  L  I  R   : E  F  A  E  D  D  G  R  R  S  K  D  Q  E  K  N  L  L  F  C  Q  L  R :   V  G  D  L  M  W  R  Y  S  M  L  M  I  L  F  L  I  T  F  S  L  L  F  Q  Q  *  C  R  S  M  T  R :   S  G  W  E  I  S  W  C  F  S  L  V  K  M  I  L  I  L  Q  Y  N  C  S  L  K  K  P  K  V  V  A  S  K  :  D  W  F  L  C  H  Y  T  R  D  F  L  E  Q  I  R :   T  L  C  F  P  L  L  P  E  E  R  E  K  *  Y  F  P  Q  I  L  L  R  R  H  *  L  *  K :   V  L  S  M  L  L  I  A  G  S  Q  N  N  V  S  T  I  R :   F  Q  I  L  R  T  W  *  W  H  Q  Y  Q  R  H  L  L  D  K  G  L  V  E  L  E  E  F  D  Q  E  S  V  L  </first_frame>
            <second_frame>  S  S  S  S  V  *  I  I  T  V  A  I  K  L  *  Y  Y  K  N  V  T  I  L  E  T  R  N  *  T  A  P  S  C  R  *  *  R  G  W  C  S  S  L  C  Y  I  F  L  L  F  L  W  :  I  W  V  W  E  F  *  E  A  K  A  E  V  A  C  V  *  V  Q  N  C  Y  S  L  L  S  G  D  S  C  Y  Y  H  H  C  W  R  N  W  K  W  K  N  N  S  N  S  S   : V  P  E  R  S  W  L  G  *  G  R  A  N  D  C  L  Y  P  T  K  E  I  G  S  P   : G  S  C  Y  K  S  C  *  R  N  G  C  *  T  W  *  G  S  W  L  Y  Y  S  I  *  R  Y  H  E  *   : G  I  N  *  G  Q  I  S  Y  *  W  G  F  A  E  G  N  D  G  *  S  S  I  E  Q  V  *  :  C  D  Y  G  R  *  S  S  *  K  V  S  L  D  G  H  L  I  G  T  T  E  K   : D  S  K  A  S  A  *  A  A  Y  Y  N  I  I  S  Y  D  *  S  K  I  N  G  C  F  L  *  Y  E  :  N  L  Q  K  T  T  G  G  G  A  R  T  K  K  R  T  C  Y  S  V  S  *   : G  *  G  I  *  C  G  D  I  L  C  *  *  S  C  F  *  L  R  S  V  C  C  F  N  S  D  V  D  P  *  P   : G  A  D  G  R  Y  P  G  V  S  H  W  S  R  *  Y  *  Y  C  N  T  I  A  H  *  R  S  P  K  *  W  Q  A  R :   T  G  F  C  A  T  I  L  G  T  S  S  S  R  S   : G  P  C  V  F  P  Y  S  Q  R  K  E  K  S  D  I  F  H  K  Y  C  *  D  V  I  D  S  R   : R  Y  C  L  C  C  *  *  R  V  L  K  T  T  F  L  Q  S   : D  F  R  Y  *  E  L  G  S  G  T  N  I  K  G  I  C  S  T  K  G  W  *  S  W  K  S  S  T  R  K  V  F  * </second_frame>
            <third_frame>   L  L  L  Q  S  E  *  L  Q  *  Q  S  S  F  N  T  T  K  M  S  Q  F  W  K  P  G  T  E  R  P  R  L  V  D  D  E  E  G  G  V  L  L  Y  A  T  S  S  S  S  S  S  G :   F  G  Y  G  S  F  E  K  Q  R  Q  R  L  P  V  Y  K  Y  K  T  A  I  L  Y  S  V  E  T  H  A  T  T  I  I  V  G  E  T  G  S  G  K  T  T  Q  I  P  Q  :  Y  L  K  E  A  G  W  A  E  G  G  R  M  I  A  C  T  Q  P  R  R  L  A  V  Q  :  A  V  A  T  R  V  A  E  E  M  D  V  K  L  G  E  E  V  G  Y  T  I  R  F  E  D  I  T  N  E  :  E  L  T  R  V  K  F  L  T  D  G  V  L  L  R  E  M  M  D  D  P  L  L  S  K  Y  S :   V  I  M  V  D  E  A  H  E  R  S  L  S  T  D  I  L  L  G  L  L  K  K  :  I  Q  K  R  R  P  E  L  R  I  I  I  S  S  A  T  I  E  A  K  S  M  A  A  F  F  N  T  R :   I  C  R  R  R  R  E  E  E  Q  G  P  R  K  E  P  A  I  L  S  V  E  :  G  R  G  F  N  V  E  I  F  Y  V  D  D  P  V  S  D  Y  V  Q  S  A  V  S  T  V  M  S  I  H  D  Q  :  E  R  M  G  D  I  L  V  F  L  T  G  Q  D  D  I  D  T  A  I  Q  L  L  T  E  E  A  Q  S  S  G  K  Q   : G  L  V  S  V  P  L  Y  S  G  L  P  R  A  D  Q  :  D  L  V  F  S  P  T  P  R  G  K  R  K  V  I  F  S  T  N  I  A  E  T  S  L  T  L  E  :  G  I  V  Y  V  V  D  S  G  F  S  K  Q  R  F  Y  N  P  :  I  S  D  I  E  N  L  V  V  A  P  I  S  K  A  S  A  R  Q  R  A  G  R  A  G  R  V  R  P  G  K  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32038" stop="32162"/>
                    <exon start="32241" stop="32385"/>
                    <exon start="33314" stop="33388"/>
                    <exon start="34087" stop="34176"/>
                    <exon start="34474" stop="34553"/>
                    <exon start="35146" stop="35215"/>
                    <exon start="35330" stop="35415"/>
                    <exon start="36606" stop="36672"/>
                    <exon start="36885" stop="36980"/>
                    <exon start="37699" stop="37798"/>
                    <exon start="37950" stop="37996"/>
                    <exon start="38080" stop="38163"/>
                    <exon start="38264" stop="38317"/>
                    <exon start="38922" stop="39020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSFNTTKMSQFWKPGTERPRLVDDEEGGVLLYATSSSSSSGFGYGSFEKQRQRLPVYKYKTAILYSVETHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRMIACTQPRRLAVQAVATRVAEEMDVKLGEEVGYTIRFEDITNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTDILLGLLKKIQKRRPELRIIISSATIEAKSMAAFFNTRICRRRREEEQGPRKEPAILSVEGRGFNVEIFYVDDPVSDYVQSAVSTVMSIHDQERMGDILVFLTGQDDIDTAIQLLTEEAQSSGKQGLVSVPLYSGLPRADQDLVFSPTPRGKRKVIFSTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32006" e_stop="32162"/>
            <exon e_start="32241" e_stop="32385"/>
            <exon e_start="33314" e_stop="33388"/>
            <exon e_start="34087" e_stop="34176"/>
            <exon e_start="34474" e_stop="34553"/>
            <exon e_start="35146" e_stop="35215"/>
            <exon e_start="35330" e_stop="35415"/>
            <exon e_start="36615" e_stop="36672"/>
            <exon e_start="36885" e_stop="36948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.283" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32006" e_stop="32162" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="32163" i_stop="32240" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32241" e_stop="32385" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32386" i_stop="33313" i_length="928"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33314" e_stop="33388" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33389" i_stop="34086" i_length="698"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34087" e_stop="34176" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="34177" i_stop="34473" i_length="297"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34474" e_stop="34553" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.781" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34554" i_stop="35145" i_length="592"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35146" e_stop="35215" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.283" acc_prob="0.911">
            <gDNA_intron_boundary i_start="35216" i_stop="35329" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35330" e_stop="35415" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.914" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35416" i_stop="36614" i_length="1199"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36615" e_stop="36672" e_length="58"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.982">
            <gDNA_intron_boundary i_start="36673" i_stop="36884" i_length="212"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="36885" e_stop="36948" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32006" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32006" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32036" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32039" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32040" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32043" stop="32162"/>
              <exon start="32241" stop="32385"/>
              <exon start="33314" stop="33388"/>
              <exon start="34087" stop="34176"/>
              <exon start="34474" stop="34553"/>
              <exon start="35146" stop="35215"/>
              <exon start="35330" stop="35415"/>
              <exon start="36615" stop="36672"/>
              <exon start="36885" stop="36948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTTCTTCAGTCTGAATAATTACAGTAGCAATCAAGCTTTAATACTACAAAAATGTCACAATTTTGGAAACCAGGAACTGAACGGCCCCGTCTTGTAGATGATGAAGAGGGTGGTGTTCTTCTCTATGCTACATCTTCCTCCTCTTCCTCTGG : ATTTGGGTATGGGAGTTTTGAGAAGCAAAGGCAGAGGTTGCCTGTGTATAAGTACAAAACTGCTATTCTTTACTCAGTGGAGACTCATGCTACTACCATCATTGTTGGAGAAACTGGAAGTGGAAAAACAACTCAAATTCCTCAG : TACCTGAAAGAAGCTGGTTGGGCTGAGGGAGGGCGAATGATTGCTTGTACCCAACCAAGGAGATTGGCAGTCCAG : GCAGTTGCTACAAGAGTTGCTGAAGAAATGGATGTTAAACTTGGTGAGGAAGTTGGTTATACTATTCGATTTGAAGATATCACGAATGAG : GAATTAACTAGGGTCAAATTTCTTACTGATGGGGTTTTGCTGAGGGAAATGATGGATGATCCTCTATTGAGCAAGTATAG : TGTGATTATGGTAGATGAAGCTCATGAAAGGTCTCTCTCGACGGACATCTTATTGGGACTACTGAAAAAG : ATTCAAAAGCGTCGGCCTGAGCTGCGTATTATAATATCATCAGCTACGATTGAAGCAAAATCAATGGCTGCTTTCTTTAATACGAG : AAGACGACGGGAGGAGGAGCAAGGACCAAGAAAAGAACCTGCTATTCTGTCAGTTGAG : GGTAGGGGATTTAATGTGGAGATATTCTATGTTGATGATCCTGTTTCTGATTACGTTCAGTCTG</gDNA_template>
            <first_frame> F  F  F  F  S  L  N  N  Y  S  S  N  Q  A  L  I  L  Q  K  C  H  N  F  G  N  Q  E  L  N  G  P  V  L  *  M  M  K  R  V  V  F  F  S  M  L  H  L  P  P  L  P  L   : D  L  G  M  G  V  L  R  S  K  G  R  G  C  L  C  I  S  T  K  L  L  F  F  T  Q  W  R  L  M  L  L  P  S  L  L  E  K  L  E  V  E  K  Q  L  K  F  L  S :   T  *  K  K  L  V  G  L  R  E  G  E  *  L  L  V  P  N  Q  G  D  W  Q  S  R :   Q  L  L  Q  E  L  L  K  K  W  M  L  N  L  V  R  K  L  V  I  L  F  D  L  K  I  S  R  M  R :   N  *  L  G  S  N  F  L  L  M  G  F  C  *  G  K  *  W  M  I  L  Y  *  A  S  I   : V  *  L  W  *  M  K  L  M  K  G  L  S  R  R  T  S  Y  W  D  Y  *  K  R :   F  K  S  V  G  L  S  C  V  L  *  Y  H  Q  L  R  L  K  Q  N  Q  W  L  L  S  L  I  R   : E  D  D  G  R  R  S  K  D  Q  E  K  N  L  L  F  C  Q  L  R :   V  G  D  L  M  W  R  Y  S  M  L  M  I  L  F  L  I  T  F  S  L </first_frame>
            <second_frame>  S  S  S  S  V  *  I  I  T  V  A  I  K  L  *  Y  Y  K  N  V  T  I  L  E  T  R  N  *  T  A  P  S  C  R  *  *  R  G  W  C  S  S  L  C  Y  I  F  L  L  F  L  W  :  I  W  V  W  E  F  *  E  A  K  A  E  V  A  C  V  *  V  Q  N  C  Y  S  L  L  S  G  D  S  C  Y  Y  H  H  C  W  R  N  W  K  W  K  N  N  S  N  S  S   : V  P  E  R  S  W  L  G  *  G  R  A  N  D  C  L  Y  P  T  K  E  I  G  S  P   : G  S  C  Y  K  S  C  *  R  N  G  C  *  T  W  *  G  S  W  L  Y  Y  S  I  *  R  Y  H  E  *   : G  I  N  *  G  Q  I  S  Y  *  W  G  F  A  E  G  N  D  G  *  S  S  I  E  Q  V  *  :  C  D  Y  G  R  *  S  S  *  K  V  S  L  D  G  H  L  I  G  T  T  E  K   : D  S  K  A  S  A  *  A  A  Y  Y  N  I  I  S  Y  D  *  S  K  I  N  G  C  F  L  *  Y  E  :  K  T  T  G  G  G  A  R  T  K  K  R  T  C  Y  S  V  S  *   : G  *  G  I  *  C  G  D  I  L  C  *  *  S  C  F  *  L  R  S  V   </second_frame>
            <third_frame>   L  L  L  Q  S  E  *  L  Q  *  Q  S  S  F  N  T  T  K  M  S  Q  F  W  K  P  G  T  E  R  P  R  L  V  D  D  E  E  G  G  V  L  L  Y  A  T  S  S  S  S  S  S  G :   F  G  Y  G  S  F  E  K  Q  R  Q  R  L  P  V  Y  K  Y  K  T  A  I  L  Y  S  V  E  T  H  A  T  T  I  I  V  G  E  T  G  S  G  K  T  T  Q  I  P  Q  :  Y  L  K  E  A  G  W  A  E  G  G  R  M  I  A  C  T  Q  P  R  R  L  A  V  Q  :  A  V  A  T  R  V  A  E  E  M  D  V  K  L  G  E  E  V  G  Y  T  I  R  F  E  D  I  T  N  E  :  E  L  T  R  V  K  F  L  T  D  G  V  L  L  R  E  M  M  D  D  P  L  L  S  K  Y  S :   V  I  M  V  D  E  A  H  E  R  S  L  S  T  D  I  L  L  G  L  L  K  K  :  I  Q  K  R  R  P  E  L  R  I  I  I  S  S  A  T  I  E  A  K  S  M  A  A  F  F  N  T  R :   R  R  R  E  E  E  Q  G  P  R  K  E  P  A  I  L  S  V  E  :  G  R  G  F  N  V  E  I  F  Y  V  D  D  P  V  S  D  Y  V  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0060H24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32038" stop="32162"/>
                    <exon start="32241" stop="32385"/>
                    <exon start="33314" stop="33388"/>
                    <exon start="34087" stop="34176"/>
                    <exon start="34474" stop="34553"/>
                    <exon start="35146" stop="35215"/>
                    <exon start="35330" stop="35415"/>
                    <exon start="36615" stop="36672"/>
                    <exon start="36885" stop="36947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSFNTTKMSQFWKPGTERPRLVDDEEGGVLLYATSSSSSSGFGYGSFEKQRQRLPVYKYKTAILYSVETHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRMIACTQPRRLAVQAVATRVAEEMDVKLGEEVGYTIRFEDITNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTDILLGLLKKIQKRRPELRIIISSATIEAKSMAAFFNTRRRREEEQGPRKEPAILSVEGRGFNVEIFYVDDPVSDYVQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 90 chains have been computed
$ 
$ memory statistics:
$ 87624 bytes spliced alignments in total
$ 41 spliced alignments have been stored
$ 2137 bytes was the average size of a spliced alignment
$ 13656 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2276 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 97 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:50:59
-->
