<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:48:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0006M22.1" temp_strand="+" temp_description="C09SLm0006M22.1  AC233067.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0006M22 upload_account_name:spain (1 - 70368)">
        <position start="6068" stop="7316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6368" g_stop="7016" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0006M22.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0006M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6368" e_stop="7016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAACTCATTCAGAACGAGAGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCTATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCAGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGTCATTTTAAGTCCTGATTCTGAAAAATGGTTTGTTGCTATGGGAGATGATATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATAGAGCCTTCGGGGAGAAAAATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGAAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGAGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTATACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0006M22.1" temp_strand="+" temp_description="C09SLm0006M22.1  AC233067.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0006M22 upload_account_name:spain (1 - 70368)">
        <position start="6727" stop="8134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7027" g_stop="7834" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0006M22.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0006M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7027" e_stop="7834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGTAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATTTGGGAGCCGCTAGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCTCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATACCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGCACAACTAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTTATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGACTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331466" ref_strand="+" ref_description="SGN-U331466        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gagagagagagttgcaagatatggaagaagagttattagaatatagaaataatattccagatgagttatcagcagaagatccacaaaaggaaaacaaaaacctgaaagaagaaaatgtaataaatgagaatcatagtaaagaacatgtcgaaaacaagctcaatggcagttcagattcgaaaactattaaagtatccaaaatctgtgataaacctagacagtttaatgattcaatatgtaactttgaggatgaaaagctaagtatttcaaaacatctggagaacttggagaaaaaactttctcaaatttctggcagaaaggcctcagataatgttccttgtaacggatgttcagaaaggataaagaaagatgttgataatcaagttaagaaacaaagtaatgatgcgggaagtatttattcccaacaggaggaggagatttcttcatcaacgcgcaatgatttttctaaatcaaatggcggtcccattgacaagcctgctgctttagacgtggaaaatgcttttgttagtgaaaagaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0006M22.1" temp_strand="-" temp_description="C09SLm0006M22.1  AC233067.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0006M22 upload_account_name:spain (1 - 70368)">
        <position start="33955" stop="32814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33655" g_stop="33114" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0006M22.1" gen_strand="-" ref_id="SGN-U331466" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0006M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33655" e_stop="33114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGAAAGAGTTGCAAGATATGGAAGAAGAGTTATTAGAATATAGAAATAATATTCCAGATGAGTTATCAGCAGAAGATCCACAAAAGGAAAACAAAAACCTGAAAGAAGAAAATGTAATAAATGAGAATCATAGTAAAGAACATGTCGAAAACAAGCTCAATGGCAGTTCAGATTCGAAAACTATTAAAGTATCCAAAATCTGTGATAAACCTAGACAGTTTAATGATTCAATATGTAACTTTGAGGATGAAAAGCTAAGTATTTCAAAACATCTGGAGAACTTGGAGAAAAAACTTTCTCAAATTTCTGGCAGAAAGGCCTCAGATAATGTTCCTTGTAACGGATGTTCAGAAAGGATAAAGAAAGATGTTGATAATCAAGTTAAGAAACAAAGTAATGATGCGGGAAGTATTTATTCCCAACAGGAGGAGGAGATTTCTTCATCAACGCGCAATGATTTTTCTAAATCAAATGGCGGTCCCATTGACAAGCCTGCTGCTTTAGACGTGGAAAATGCTTTTGTTAGTGAAAAGAAAAAC</genome_strand>
        <mrna_strand>GAGAGAGAGAGTTGCAAGATATGGAAGAAGAGTTATTAGAATATAGAAATAATATTCCAGATGAGTTATCAGCAGAAGATCCACAAAAGGAAAACAAAAACCTGAAAGAAGAAAATGTAATAAATGAGAATCATAGTAAAGAACATGTCGAAAACAAGCTCAATGGCAGTTCAGATTCGAAAACTATTAAAGTATCCAAAATCTGTGATAAACCTAGACAGTTTAATGATTCAATATGTAACTTTGAGGATGAAAAGCTAAGTATTTCAAAACATCTGGAGAACTTGGAGAAAAAACTTTCTCAAATTTCTGGCAGAAAGGCCTCAGATAATGTTCCTTGTAACGGATGTTCAGAAAGGATAAAGAAAGATGTTGATAATCAAGTTAAGAAACAAAGTAATGATGCGGGAAGTATTTATTCCCAACAGGAGGAGGAGATTTCTTCATCAACGCGCAATGATTTTTCTAAATCAAATGGCGGTCCCATTGACAAGCCTGCTGCTTTAGACGTGGAAAATGCTTTTGTTAGTGAAAAGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331886" ref_strand="+" ref_description="SGN-U331886        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to SP:Q02455 Myosin-like protein MLP1 {Saccharomyces cerevisiae}; contains Pfam profile PF04576: Protein of unknown function, DUF593 | chr1:2813064-2817642 REVERSE | Aliases: F22O13.29, F22O13_29(evalue: 3e-36, score=147) genbank/nr: gi|26451366|dbj|BAC42783.1| unknown protein [Arabidopsis thaliana](evalue: 2e-34, score=147)">
      <seq>aaccaagtgcaattagtgcttctgtaaatgctggagaaggtatgaagtcacttcctcaactttctgcttctgtgatggatgaatcgcaaactgcaagtctgaggaatcatgatcatggtgatgaccagcaaagaagtgatgcttctagctctgacggggtacatgtggttcaaacatctaccatcaaggggagagatgattctggtaatgaatcagcagatggattcagcgtcagtgatattgaggacgagagtattgttgataggttgaaacgacagattgaacatgatcagagatacataaattctctatacaaggaactggaggaagaaaggagtgcatcagccattgccactaatcaggcaatggccatgatcactacgttgcaagaggagaatgcgtcacttcatatggaggccttgcagtatttaagaatgatggaagagcaagccgagtatgatatggaggcactagaaagggctaatgatcaacttgctgaaagggagaaagagttgcaagatatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0006M22.1" temp_strand="-" temp_description="C09SLm0006M22.1  AC233067.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0006M22 upload_account_name:spain (1 - 70368)">
        <position start="34456" stop="33330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34156" g_stop="33630" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0006M22.1" gen_strand="-" ref_id="SGN-U331886" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0006M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34156" e_stop="33630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAGTGCAATTAGTGCTTCTGTAAATGCTGGAGAAGGTATGAAGTCACTTCCTCAACTTTCTGCTTCTGTGATGGATGAATCGCAAACTGCAAGTCTGAGGAATCATGATCATGGTGATGACCAGCAAAGAAGTGATGCTTCTAGCTCTGACGGGGTACATGTGGTTCAAACATCTACCATCAAGGGGAGAGATGATTCTGGTAATGAATCAGCAGATGGATTCAGCGTCAGTGATATTGAGGACGAGAGTATTGTTGATAGGTTGAAACGACAGATTGAACATGATCAGAGATACATAAATTCTCTATACAAGGAACTGGAGGAAGAAAGGAGTGCATCAGCCATTGCCACTAATCAGGCAATGGCCATGATCACTAGGTTGCAAGAGGAGAAGGCGTCACTTCATATGGAGGCCTTGCAGTATTTAAGAATGATGGAAGAGCAAGCCGAGTATGATATGGAGGCACTAGAAAGGGCTAATGATCAACTTGCTGAAAGGGAGAAAGAGTTGCAAGATATGGAA</genome_strand>
        <mrna_strand>AACCAAGTGCAATTAGTGCTTCTGTAAATGCTGGAGAAGGTATGAAGTCACTTCCTCAACTTTCTGCTTCTGTGATGGATGAATCGCAAACTGCAAGTCTGAGGAATCATGATCATGGTGATGACCAGCAAAGAAGTGATGCTTCTAGCTCTGACGGGGTACATGTGGTTCAAACATCTACCATCAAGGGGAGAGATGATTCTGGTAATGAATCAGCAGATGGATTCAGCGTCAGTGATATTGAGGACGAGAGTATTGTTGATAGGTTGAAACGACAGATTGAACATGATCAGAGATACATAAATTCTCTATACAAGGAACTGGAGGAAGAAAGGAGTGCATCAGCCATTGCCACTAATCAGGCAATGGCCATGATCACTACGTTGCAAGAGGAGAATGCGTCACTTCATATGGAGGCCTTGCAGTATTTAAGAATGATGGAAGAGCAAGCCGAGTATGATATGGAGGCACTAGAAAGGGCTAATGATCAACTTGCTGAAAGGGAGAAAGAGTTGCAAGATATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322293" ref_strand="+" ref_description="SGN-U322293        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr1:2067528-2070445 FORWARD | Aliases: F4H5.18, F4H5_18(evalue: 5e-129, score=458) genbank/nr: gi|15222179|ref|NP_172158.1| expressed protein [Arabidopsis thaliana] gi|13605673|gb|AAK32830.1| At1g06730/F4H5_22 [Arabidopsis thaliana](evalue: 4e-127, score=458)">
      <seq>ggcttgccttccctttaagcagggagggactgagaattttctgaatgcatactcacgccgccatatccttcaaaccttcatccagtggcttgttctctctcaatccaggaatcttccaaaaccctagttttgtaattcgcccactcagaaacaagcttcgttattccattcttaattgcagaggcgttgaaattccatttcctaaactccgcccaagcattaattctgtcaacaatggctccacaagtatcgccgctgctgtcaaagatgttgatattgctacgcttgggaatctctgtgtcgatattgttctcaatgtaccggagttacctcctaagcctttagaacaacgaaaggcttatctggaacagttgtccaaatccccgcctgatacgcggtactgggaggcaggtggaaactgcaatgtggctatagcagcagcaaggcttggcctacgttgcatctctgttggtcatgtaggtgatgagatctatggacggttcctcattgatgtgcttagtgatgaaggtattagtatagttgggatgaatgagcggagtgaagcacttaatctttcaagttctgaaaatggaacactactgtgctgggtgttagtggacccttcgcagagacatggcttttgcagtcgtgcagattttagtgcagatcctgctttcagttggatgaccagactatctactgaagtaaagatggctattagaaaatcaaagatcctcttttgcaatggttatgactttgatgaactctcccctagccttcttgaatctgctcttgagtgtgctgtggaatctgggacatctatcttttttgaccctggaccacgaggtaggagtcttatcgcaggaagacctgaagaacaaagaacaattggaaagttgttgacgatgagtgaagtgcttctactgacttctgaggaggctgcatctttaactggtatcaaagatccaattttagcgggccaggatttgctcaataacggagtttgtactaagtgggtgattgttaagatgggtccgaagggttcaattttaatcactaagtcgagcataacgtgtgcacctgctttcaaggtcaatataatagacactgtgggctgtggagatagttttgtggctgctgttgcatttggattcatacatgacttgcccttgagttatacattaacccttgcaaatgcagtgggtgctgcaactgctacggggtgtggtgctggtagaaatgttgccagtttggggaaggtccaggaactattgaaggaatcaaatttaaacgaggatgagaagttttgggatgaagtactgaatgataatgtgaactcccgagatgtaactttactgtcaaaaatggttgtaaatggtaatagtcaggtaaaccgtgtctccctacaaaaggtggtatccgaagtgctgcccaagcttgaatttgcgccaaagatgactggctccttcaaatagacgatgcagtttttctgggacaaataaattttgttgttgttaccatcattctgattgattgttgcatattcaccccttaaaaagaaatgcatgagttgcaggtgctctagcttgcggattatgaagtgcacagttgtattagggctgctaccttgctggtggtcgaaccgacagttttgttgatagagtaagaggtgtccagatactattcatgatctgcttgcatgcatgcgagagggattggcagatagattgagcgttagtgtttgagagaaattgcatgatcaagttgcttgtgattcctgattttttctacgtgcacacatgagaagctgtgccttgcttcttgtaatttgattcttacatctaacatacagaagaaaacatgggcaatctgttttacaatggaagccatatagccatacatttctagtttaggatgagtagaagacaccaattcatgtttgcaacacgtccatattaccatttatgatacaaatacttgggcactcattttgtgtgtcccttcccgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0006M22.1" temp_strand="+" temp_description="C09SLm0006M22.1  AC233067.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0006M22 upload_account_name:spain (1 - 70368)">
        <position start="44637" stop="51888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44937" g_stop="45331" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45332" i_stop="46918" i_length="1587">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46919" g_stop="47169" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="646" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47170" i_stop="47325" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47326" g_stop="47617" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="938" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47618" i_stop="49859" i_length="2242">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49860" g_stop="50012" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="939" r_stop="1091" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50013" i_stop="50669" i_length="657">
            <donor d_prob="0.340" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50670" g_stop="51589" g_length="920"/>
          <reference_exon_boundary r_type="cDNA" r_start="1092" r_stop="2011" r_length="920" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0006M22.1" gen_strand="+" ref_id="SGN-U322293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2011</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0006M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44937" e_stop="45331"/>
          <exon e_start="46919" e_stop="47169"/>
          <exon e_start="47326" e_stop="47617"/>
          <exon e_start="49860" e_stop="50012"/>
          <exon e_start="50670" e_stop="51589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGCCTTCCCTTTAAGCAGGGAGGGACTGAGAATTTTCTGAATGCATACTCACGCCGCCATATCCTTCAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACGGTTCGTCTGTTTTTATTGAACTACAGATTGATTATAGAATATTTTGTTTTTTCTTGTTACCGTTATTTGTTGGTTTCTGTTTATACAGAATATAGTTTTCTGGTTTTTGCAAATTTATTGGATGCTAGTGCAGAAACCAAGTGTTCCTTTGGTTTCATTTATACGCAGTTAATACAGTGTACAATTAAGCTATTTGTAGTCCTAATTACCCCAAAAGCTCAAAAAATACTTGGCTACGAATGGTTGATGTTAATGTGAGTTGTACATATTATAGTAGTGATAGTTGAAGAAAATACTGAAGTAATAGTTGAAAATTTTAATTTGATAGATAAAATATACATAAAAGTTTTAGATGGATTTATGTTAGAAATGTTGATATCTTGGATGTCTTGAAAGAAAAAGAGTGTAATAGTAGAAAGTCCTTAAAACCCTAGAGAAAAAAACAAGAAAAGAAAAATGAATTGGGATGGAAGGAGTACTGTGACAACTCAATGAAGTTCTGAAGCACAAATGATTCTACATAAGGCCATCTACCGAACACATTTGACCATATAGATTTTGGAGAGTTGAATAAGTAGTCAGTCTTTTTTGATGGTTATTTTTGTACTTTGTGAATGCATAATTATTTTATCTTTTCTGATAATCGTGGTGTCCGGTCTGCACACTTCAATTAACTCCACGGGATACTTGTCACCTCCTACTAGCAATAGGTACCAAGTTACTCTGTTCACCAAGGCTAGAACAGATAGGAAGAAATCACCTAGTGTTTTGTCATTGTAGATACATAATTTTTCGTCTAGAAAACTATATATTTTGTAACCAGACTGCATTCACAACCAATTATTTTATCAACAATGACACTATTAAGTCGTGAAATACTAGTTATTAGAGCATCAAATGCATCTATAGAAGATTTGGCTCAAATATGGTTGAGCTCATTTGCATGTTAAATGAATGATGTAGTTGATTAAGTTTCTCCACCACATTTTGCTCCCAATTCTTGGTGGTCAATGAAGTGGGAACTGGGAAGGTAACCATTAATTCTCAAGTTCAAAATCAACTTGTGTTCAAATTCCGGCGAAGGCAAAAATAGCCATTAGGTGATTCCTTCACATCGGTGGAAAGAGTTATTTGGTATCTATGTTGGTGGGAAAAACCACATACTCAATCGTATAGTTCAGGTGTGCACAAGCCGACTTGTCAGCAATCATCATAAAATAAAAGTCTATTTTTACCACATTTTGGGTTCAAGCCCACTATTTTAACAAAGTAAAATATGTGGTTTAATGCTTGGATGCTATCATCTTTGGAAGATGTTATCTTCAGTTGCAATAGCAGAATTTTGGAAATGTAATGGGGTAATAGTGTATTCCCAGCTCTCCAGCTCTTGACTTCTACGCCTACATATGTTTTCTAGACAGCTTCAGTTAAGTTGGAATATAGAAATATTGAAGTATTATCTACATACCAGTTCAGTGATGCTGAAAATGTGTGGTATTAGCACCCCTGTTGCATCATCCTTTTATATTATTTCCTTATGGTTGTATGTATGTTAAGTGATATCTTGATTATTTGACCCTGTTTCAGCGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAGGTCCTTTTGATCTTTCCCTCTCACTTGGTGCATAATTTCTTGATCATTGTTTGGCCCACTTTATGTTGCACGTAGAAAGTTATCATTGTCTTTCTTTTATAAGATAAGGTATAAAAAGGATCATAGTCTAACCTTTAAGACGTTAATGTTTTCCAGTCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAGGTTTGTGTTTCATACTTGCAAAAATTTGTCTCACTTGTGCCTTCTGCTATTTAACATCTCAATGTGTGGCAAAAAATGATAATAACCCAATTTTGTGAAGATAAAAAATATAATAGTTTCCCTGTGTGCACTTTAATGTTTAAATAATCCATTTAAAAGAGCTCTTCTGGTAGCTAAAAAGTATCTCACTGAACATGTGATATTGGAATCTGGTAGCTAAAGAGTTCTGTTATACGCTTGTAGCTAAAGAGTTCTGTTATATACTGGAATCTGGAAATACTGGTTGTAGTTTTGGTTTATTGACAAAATATGTGCAACTTAGAGGCAGCTGGAATTTATGGTATAAATAAGTCATTTTAAGAAAGTTATACTTGCTCCAGGCTATGGAGTTTTTTGTATTTGAAGCTTTCTATAACTCTTTTGCGTCATATCCTTTTTTTTTTCTTTTAACAATTTATCTGATTCCATTTTTGATATTTTTGAAAATTTGGAGTGTTAGTTTTTTATCCAAGGGTGAACATTTGACAGTAAGAATGCTATGTTTAAAGCTAGTTTTAATGCATTTAGACCTAAATCATGGACTTCTTTACTTTTTATCATTGCTTTGTTGGAGATATAAATGGAGTAACAAAGACAAAAGAGGCATGCATCTTAGAGGGATTCTAATTGGTTAGGGAGGAAAAATTGGTACACAGTGATATATATATATATATATATATATATGGTAATTGACCTTTTGTATTAAACACCAAGTGAACTATTTACAAGATCCATAACTAGGCTAAAAGCAGCCTGTTATCTTAAGCAAAAACCAACCTAGCACAGAGCTATAATCTAGAATCTAAATCCATGTACAGCAGCTTGAATACTAGGAGATGCTCTAAAATTATGTACTTTTGCAATCTCTCTTGCTATTCTCTCCCAGCTTCTACTTTACTTCTCAACAACTCTTTAAGTTCCTTTCTATCCATAACCATGTACAAATTTAGCATAAACCAGTTTAAAAATTTATGCAGCTTGTGTCTTGCCTTTATCTCTGGTAATGATATTGTGAATGTGTTGGTCCCATTCAGTAGCAGCATGGTCTTGTCTCTGAATCAACACCATCAGGCCTGTTCCAGAATTGTGCAGATTCACATTGTCTGGAGAGATGATCAAATATTTCATCTTTGATTCTGGCACAGATGCACTGTACTCATTTAGTATCTACCATTAAGCCCTATCCTGTAAGTCTATCTGTGGTTAAGAGCTTCTTTTGCACCTAGAGCAACACTGTGAATCTAGCATTAGGCCTGGTATCATTTCTCAACATGAGTCATTTCCATGTCACTCTGGATTGGTCACCTAATAGCATCTTATAAAATATGCCTATAATACCTTTTCCAGCCTTGAGTGATCCCTGCACCTGCTCCATACGGACTCTAGCTTCAAATATTTTCCTTATCATCCTGCTAGCTTGCTATGGCACAACAACATTTGCAAATATTCATGGTGATTTTGCCACTTTTCCATGTCAAATATTCAGTCACGTGGAGCATTGTTTTTTTGTAAGAAATAAAAAGGTTAAGGTGCTAACTGTGAAAAATTAAAGGATACTTATGATAGGGGTGTGTAACACACAAAATTGGGGGTGCAAATGCAGAACTGGTTTTTGGCATTCTCTTTCATGCTGTTACAACATATAAATGGAAAATAATATAAACATTTGAAAAATATAAAAAATTAATATCTGGGAAATTGATTGTTTTTGTGTGTTTGATCATTTTCGTAGGAAGTCCATAAAAGGATTGTTTAGTTGCTTGTTAGAGCAATGCATGTAGTATTAGTATAAATACCGAGTGCGGATAAATTTTTGTTGTAGCAATGTACCCATCTTTGTGAAATTCTAGATCCCCTACTGTACTATTTCCTTGTAGTACCACTACCCCTTTCCATTTTCATGTACATTTTTAGGTTAATAAGGTTAAGCAATGGATGTAGCGTTATCCCTATTATGGTCTGCTGTAGTTGTAAAGTTGACCTCTTGATGCGATATTCGAGCTGATTTGTTGGCTTTTCCCTTGTTGCTATATCATAATGTAGCATAGTGGTTATCTTTTGCTGAATTTTTACTGTGTAAATTATGATGTTCCCCTTTCTTGTAAATCAGTGGACAGTTTTACTGCAGTGATAGCTTTTAGTGTATTGAGAATGTGTTCCCTCCCCGGAAACTTACTTATCTGAATCACTTTGTCTTCTCCAGGCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAGGTATCAACTCTGTAGCTGGCTGGAATATTGGTTCTTGTAGAAAAGAAGTAGTCAATTCATCTAATTAACAGAAGTTTACTTGCTTTATCCCCATTAGTTATCTTACAACAACATACCCAATGTAATCCCTGGGGTTCGGGGAAGGTGATGTGTACGCCAACCTTATCCCTACTAGGTAGAGAGGTTATTTCTGATAAACCTTTGGGTCACCATTAGTTAGCTTATCCCAAAGAAATTTATGTTCTAGTTGGGCTCTCTTTCTTCATAAAACCCCAATTGAAGGGCGGGCAGATGATCAATGAGCACGCAACATTTCGGGATATTTAAGAAAATTGAAGCAAAGTTAATATATCTCATGATTTCTAAAAGAATCACCAACTTCCATTCCCAGCAAATGTAGGAACCTTAATGTTCCCTAATATTTTTTCTTTTTAATAACTGAGAAATCTACTAGGCTAGTCACGGTTGGAAACTCGATTGATAATAGGCCCACCCCTTTGTCCGTCTCCACTTATGTATCAGGTTTTTGTTTGAGGCTGGGTTGGAACCTGTGATGCAGGTCTAACCTACACATCATGTGTTGCGCTCTTTCCACTAAAACAAAGTGCATCTTTCATAAATTTGATTTTAAATGTCCTCTCTGATTCATTGTAACAGGTCAATATAATAGACACTGTGGGCTGTGGAGATAGTTTTGTGGCTGCTGTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACAATGGAAGCCATATAGCCATACATTTCTAGTTTAGGATGAGTAGAAGACACCAATTCATGTTTGCAACACGTCCATATTACCATTTATGATACAAATACTTGGGCACTCATTTTGTGTGTCCCTTCCCGTTAT</genome_strand>
        <mrna_strand>GGCTTGCCTTCCCTTTAAGCAGGGAGGGACTGAGAATTTTCTGAATGCATACTCACGCCGCCATATCCTTCAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAG............................................................................................................................................................TCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATATAATAGACACTGTGGGCTGTGGAGATAGTTTTGTGGCTGCTGTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACAATGGAAGCCATATAGCCATACATTTCTAGTTTAGGATGAGTAGAAGACACCAATTCATGTTTGCAACACGTCCATATTACCATTTATGATACAAATACTTGGGCACTCATTTTGTGTGTCCCTTCCCGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343874" ref_strand="+" ref_description="SGN-U343874        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgctcttgttcacagttctcactcaaatctctttcttcgggtgcgcggactttcagtctctgaaatggctgatgaaaattttgagcagcctgagatgggtaacttgcatgacacagaaaacctggataatatgaataatgttcaagacaatgataatgtgaatggcaaggataacgtgcacgatgctaatcacgtgcacgatgctgatcacgtgcacgatgctgatgatgtgcataacatgaataatattcatgactcagaagccattcctgctttgattaatgcacctgaggagacacatcattctgaagaggataaagttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0006M22-JjREw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0006M22.1" temp_strand="-" temp_description="C09SLm0006M22.1  AC233067.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0006M22 upload_account_name:spain (1 - 70368)">
        <position start="62062" stop="60288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61762" g_stop="61702" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61701" i_stop="60854" i_length="848">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60853" g_stop="60588" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="327" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0006M22.1" gen_strand="-" ref_id="SGN-U343874" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0006M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61762" e_stop="61702"/>
          <exon e_start="60853" e_stop="60588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTTGTACACAGTTCGCACTCAAATCTCTTTCTTCGATTGCGCAAACTTTCAGTCTCTGTAAGTATTTCATGCTAACCATATGTAATTTACGAATCTCGCATATTAAATCTATGTTTTTCTATGTGTTTGCATTTGTTTACAAATTTGTTGTCAATTTTAAGGATTGTTTATGTGTTTCAGGATGATTTTTTTTTTTTTTTGGGGAAAGAGATGGTTCTAAAAGGTTTTAGAATTGCGGGTTTTTTGAATTAGGGTTTTAAAACTTCAGGGAGCGTTGGTGAAACCCGAGGTTGATGGTGCGAAGCTTTGGGTTTGTTTGAGTTTTTGGCAACGTGGGATTCCCGAGGTGTTAGGGTTTGGGATTTTACAGGTTTTAGACATAGGTTTCTTTGTAACGAACTCTCCGAAAGTGTTGCGATATCGGTGTTGGATCCTCCTAAAATGCACCACTTTTGGAGAATCTGACTCACTTGATGGCATTTTTGATAATGCACCCACCCTCTAATCTTCTGGTCTAAATCCAAGAGTAGGTCGCCATTACTCCGTTAGAATTTCGAGTTGTGAAGTGGCATCTTATCTGTATTTGCCTTTGCAGTTGAACCTAAGCCTTGGTGGCTTTCTAAACTTGGTACTAGAGGATGATTTCGACCAAAGAAATGTGGTAGTTTGTTAGAAGGTATTGGGTTTTGTGACTTAGAACTTCAGTATGATTTTTGCTCTCGAGAATGCTAGGCTCATGATTGAGAAATTTCTTGGGTCGGTGATGCATGCGTGATAAAGTTGATTACTGTTATGTTCCAGCTTCTGCACACGTGAAATGCAGGAGGCCTTTCAGAGTTCAATAGTTCATTTAGCCAATTGCTGTAGCTGGATATTTTTCTAATGTCTTTTTGTTTTTCTTCCAGGAAATGGCTGATGAAAATTTTGAGCAGCCTGAGATGGGTAACTTGCATGACACAGAAAACCTGGATAATATGAATAATGTTCAAGACAATGATAATGTGAATGGCAAGGATAACGTGCACGATGCTAATCACGTGCACGATGCTGATCACGTGCACGATGCTGATGATGTGCATAACATGAATAATATTCATGACTCAGAAGCCATTCCTGCTTTGATTAATGCACCTGAGGAGACACATCATTCTGAAGAGGATAAAGTTACTCC</genome_strand>
        <mrna_strand>CGCTCTTGTTCACAGTTCTCACTCAAATCTCTTTCTTCGGGTGCGCGGACTTTCAGTCTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCTGATGAAAATTTTGAGCAGCCTGAGATGGGTAACTTGCATGACACAGAAAACCTGGATAATATGAATAATGTTCAAGACAATGATAATGTGAATGGCAAGGATAACGTGCACGATGCTAATCACGTGCACGATGCTGATCACGTGCACGATGCTGATGATGTGCATAACATGAATAATATTCATGACTCAGAAGCCATTCCTGCTTTGATTAATGCACCTGAGGAGACACATCATTCTGAAGAGGATAAAGTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6368" PGL_stop="7016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6368" e_stop="7016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="6368" e_stop="7016" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6368" stop="7016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAAAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAACTCATTCAGAACGAGAGCGATTTGAAAGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCTATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCAGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGTCATTTTAAGTCCTGATTCTGAAAAATGGTTTGTTGCTATGGGAGATGATATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATAGAGCCTTCGGGGAGAAAAATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGAAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGAGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTATACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  K  N  W  E  S  *  *  T  G  G  V  S  T  H  S  E  R  E  R  F  E  R  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  L  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  Y  G  V  P  T  Q  E  S  D  M  G  S  G  H  R  A  F  G  E  K  N  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  E  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  K  T  G  S  L  D  K  Q  V  E  F  Q  L  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  Y  R  S  I  A  Q  D  R  P  R  R  V  G  V  Q  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  V  I  L  S  P  D  S  E  K  W  F  V  A  M  G  D  D  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  E  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  E  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  R  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  I  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  N  S  F  R  T  R  A  I  *  K  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  G  V  *  L  K  I  G  Q  G  G  L  E  F  S  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  S  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  I  W  S  P  Y  T  R  I  R  H  G  I  W  S  *  S  L  R  G  E  K  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  K  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  Y  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0006M22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6369" stop="7016"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSKTGSLDKQVEFQLIQNESDLKEPEEEDQEPQTETDIPESMPSDIYRSIAQDRPRRVGVQPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEVILSPDSEKWFVAMGDDMESLHKNQTWDLVIEPSGRKIITCKWVFKKKEGISPAEEVKYKARVVARGFNQRERVDYNEIFSPVVRHTSIRVLLAIVIHQNLELEQLDVKTTFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7027" PGL_stop="7834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7027" e_stop="7834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="7027" e_stop="7834" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7027" stop="7834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGTAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATTTGGGAGCCGCTAGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCTCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATACCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGCACAACTAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTTATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGACTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  S  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  I  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  H  N  *  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  L  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  T  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  V  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  F  G  S  R  *  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  Y  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  Y  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  *  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  *  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  L  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  T  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  A  Q  L  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  D  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0006M22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7095" stop="7832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTLSAANIHLTAMFAPQSEEEKEYMSRVPYTSAVGSLMYAMVCTRPDLAHAVSVVSRFMAQLGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTDYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="34156" PGL_stop="33114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34156" e_stop="33114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="34156" e_stop="33114" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34156" stop="33630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33655" stop="33114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCAAGTGCAATTAGTGCTTCTGTAAATGCTGGAGAAGGTATGAAGTCACTTCCTCAACTTTCTGCTTCTGTGATGGATGAATCGCAAACTGCAAGTCTGAGGAATCATGATCATGGTGATGACCAGCAAAGAAGTGATGCTTCTAGCTCTGACGGGGTACATGTGGTTCAAACATCTACCATCAAGGGGAGAGATGATTCTGGTAATGAATCAGCAGATGGATTCAGCGTCAGTGATATTGAGGACGAGAGTATTGTTGATAGGTTGAAACGACAGATTGAACATGATCAGAGATACATAAATTCTCTATACAAGGAACTGGAGGAAGAAAGGAGTGCATCAGCCATTGCCACTAATCAGGCAATGGCCATGATCACTAGGTTGCAAGAGGAGAAGGCGTCACTTCATATGGAGGCCTTGCAGTATTTAAGAATGATGGAAGAGCAAGCCGAGTATGATATGGAGGCACTAGAAAGGGCTAATGATCAACTTGCTGAAAGGGAGAAAGAGTTGCAAGATATGGAAGAAGAGTTATTAGAATATAGAAATAATATTCCAGATGAGTTATCAGCAGAAGATCCACAAAAGGAAAACAAAAACCTGAAAGAAGAAAATGTAATAAATGAGAATCATAGTAAAGAACATGTCGAAAACAAGCTCAATGGCAGTTCAGATTCGAAAACTATTAAAGTATCCAAAATCTGTGATAAACCTAGACAGTTTAATGATTCAATATGTAACTTTGAGGATGAAAAGCTAAGTATTTCAAAACATCTGGAGAACTTGGAGAAAAAACTTTCTCAAATTTCTGGCAGAAAGGCCTCAGATAATGTTCCTTGTAACGGATGTTCAGAAAGGATAAAGAAAGATGTTGATAATCAAGTTAAGAAACAAAGTAATGATGCGGGAAGTATTTATTCCCAACAGGAGGAGGAGATTTCTTCATCAACGCGCAATGATTTTTCTAAATCAAATGGCGGTCCCATTGACAAGCCTGCTGCTTTAGACGTGGAAAATGCTTTTGTTAGTGAAAAGAAAAAC</gDNA_template>
            <first_frame> N  Q  V  Q  L  V  L  L  *  M  L  E  K  V  *  S  H  F  L  N  F  L  L  L  *  W  M  N  R  K  L  Q  V  *  G  I  M  I  M  V  M  T  S  K  E  V  M  L  L  A  L  T  G  Y  M  W  F  K  H  L  P  S  R  G  E  M  I  L  V  M  N  Q  Q  M  D  S  A  S  V  I  L  R  T  R  V  L  L  I  G  *  N  D  R  L  N  M  I  R  D  T  *  I  L  Y  T  R  N  W  R  K  K  G  V  H  Q  P  L  P  L  I  R  Q  W  P  *  S  L  G  C  K  R  R  R  R  H  F  I  W  R  P  C  S  I  *  E  *  W  K  S  K  P  S  M  I  W  R  H  *  K  G  L  M  I  N  L  L  K  G  R  K  S  C  K  I  W  K  K  S  Y  *  N  I  E  I  I  F  Q  M  S  Y  Q  Q  K  I  H  K  R  K  T  K  T  *  K  K  K  M  *  *  M  R  I  I  V  K  N  M  S  K  T  S  S  M  A  V  Q  I  R  K  L  L  K  Y  P  K  S  V  I  N  L  D  S  L  M  I  Q  Y  V  T  L  R  M  K  S  *  V  F  Q  N  I  W  R  T  W  R  K  N  F  L  K  F  L  A  E  R  P  Q  I  M  F  L  V  T  D  V  Q  K  G  *  R  K  M  L  I  I  K  L  R  N  K  V  M  M  R  E  V  F  I  P  N  R  R  R  R  F  L  H  Q  R  A  M  I  F  L  N  Q  M  A  V  P  L  T  S  L  L  L  *  T  W  K  M  L  L  L  V  K  R  K   </first_frame>
            <second_frame>  T  K  C  N  *  C  F  C  K  C  W  R  R  Y  E  V  T  S  S  T  F  C  F  C  D  G  *  I  A  N  C  K  S  E  E  S  *  S  W  *  *  P  A  K  K  *  C  F  *  L  *  R  G  T  C  G  S  N  I  Y  H  Q  G  E  R  *  F  W  *  *  I  S  R  W  I  Q  R  Q  *  Y  *  G  R  E  Y  C  *  *  V  E  T  T  D  *  T  *  S  E  I  H  K  F  S  I  Q  G  T  G  G  R  K  E  C  I  S  H  C  H  *  S  G  N  G  H  D  H  *  V  A  R  G  E  G  V  T  S  Y  G  G  L  A  V  F  K  N  D  G  R  A  S  R  V  *  Y  G  G  T  R  K  G  *  *  S  T  C  *  K  G  E  R  V  A  R  Y  G  R  R  V  I  R  I  *  K  *  Y  S  R  *  V  I  S  R  R  S  T  K  G  K  Q  K  P  E  R  R  K  C  N  K  *  E  S  *  *  R  T  C  R  K  Q  A  Q  W  Q  F  R  F  E  N  Y  *  S  I  Q  N  L  *  *  T  *  T  V  *  *  F  N  M  *  L  *  G  *  K  A  K  Y  F  K  T  S  G  E  L  G  E  K  T  F  S  N  F  W  Q  K  G  L  R  *  C  S  L  *  R  M  F  R  K  D  K  E  R  C  *  *  S  S  *  E  T  K  *  *  C  G  K  Y  L  F  P  T  G  G  G  D  F  F  I  N  A  Q  *  F  F  *  I  K  W  R  S  H  *  Q  A  C  C  F  R  R  G  K  C  F  C  *  *  K  E  K  </second_frame>
            <third_frame>   P  S  A  I  S  A  S  V  N  A  G  E  G  M  K  S  L  P  Q  L  S  A  S  V  M  D  E  S  Q  T  A  S  L  R  N  H  D  H  G  D  D  Q  Q  R  S  D  A  S  S  S  D  G  V  H  V  V  Q  T  S  T  I  K  G  R  D  D  S  G  N  E  S  A  D  G  F  S  V  S  D  I  E  D  E  S  I  V  D  R  L  K  R  Q  I  E  H  D  Q  R  Y  I  N  S  L  Y  K  E  L  E  E  E  R  S  A  S  A  I  A  T  N  Q  A  M  A  M  I  T  R  L  Q  E  E  K  A  S  L  H  M  E  A  L  Q  Y  L  R  M  M  E  E  Q  A  E  Y  D  M  E  A  L  E  R  A  N  D  Q  L  A  E  R  E  K  E  L  Q  D  M  E  E  E  L  L  E  Y  R  N  N  I  P  D  E  L  S  A  E  D  P  Q  K  E  N  K  N  L  K  E  E  N  V  I  N  E  N  H  S  K  E  H  V  E  N  K  L  N  G  S  S  D  S  K  T  I  K  V  S  K  I  C  D  K  P  R  Q  F  N  D  S  I  C  N  F  E  D  E  K  L  S  I  S  K  H  L  E  N  L  E  K  K  L  S  Q  I  S  G  R  K  A  S  D  N  V  P  C  N  G  C  S  E  R  I  K  K  D  V  D  N  Q  V  K  K  Q  S  N  D  A  G  S  I  Y  S  Q  Q  E  E  E  I  S  S  S  T  R  N  D  F  S  K  S  N  G  G  P  I  D  K  P  A  A  L  D  V  E  N  A  F  V  S  E  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0006M22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34154" stop="33114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSAISASVNAGEGMKSLPQLSASVMDESQTASLRNHDHGDDQQRSDASSSDGVHVVQTSTIKGRDDSGNESADGFSVSDIEDESIVDRLKRQIEHDQRYINSLYKELEEERSASAIATNQAMAMITRLQEEKASLHMEALQYLRMMEEQAEYDMEALERANDQLAEREKELQDMEEELLEYRNNIPDELSAEDPQKENKNLKEENVINENHSKEHVENKLNGSSDSKTIKVSKICDKPRQFNDSICNFEDEKLSISKHLENLEKKLSQISGRKASDNVPCNGCSERIKKDVDNQVKKQSNDAGSIYSQQEEEISSSTRNDFSKSNGGPIDKPAALDVENAFVSEKKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44937" PGL_stop="51589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44937" e_stop="45331"/>
            <exon e_start="46919" e_stop="47169"/>
            <exon e_start="47326" e_stop="47617"/>
            <exon e_start="49860" e_stop="50012"/>
            <exon e_start="50670" e_stop="51589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.340" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44937" e_stop="45331" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45332" i_stop="46918" i_length="1587"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46919" e_stop="47169" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.541">
            <gDNA_intron_boundary i_start="47170" i_stop="47325" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47326" e_stop="47617" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.983">
            <gDNA_intron_boundary i_start="47618" i_stop="49859" i_length="2242"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49860" e_stop="50012" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.340" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50013" i_stop="50669" i_length="657"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="50670" e_stop="51589" e_length="920"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44937" stop="45331"/>
              <exon start="46919" stop="47169"/>
              <exon start="47326" stop="47617"/>
              <exon start="49860" stop="50012"/>
              <exon start="50670" stop="51589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTGCCTTCCCTTTAAGCAGGGAGGGACTGAGAATTTTCTGAATGCATACTCACGCCGCCATATCCTTCAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG : CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAG : TCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAG : GCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAG : GTCAATATAATAGACACTGTGGGCTGTGGAGATAGTTTTGTGGCTGCTGTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACAATGGAAGCCATATAGCCATACATTTCTAGTTTAGGATGAGTAGAAGACACCAATTCATGTTTGCAACACGTCCATATTACCATTTATGATACAAATACTTGGGCACTCATTTTGTGTGTCCCTTCCCGTTAT</gDNA_template>
            <first_frame> G  L  P  S  L  *  A  G  R  D  *  E  F  S  E  C  I  L  T  P  P  Y  P  S  N  L  H  P  V  A  C  S  L  S  I  Q  E  S  S  K  T  L  V  L  *  F  A  H  S  E  T  S  F  V  I  P  F  L  I  A  E  A  L  K  F  H  F  L  N  S  A  Q  A  L  I  L  S  T  M  A  P  Q  V  S  P  L  L  S  K  M  L  I  L  L  R  L  G  I  S  V  S  I  L  F  S  M  Y  R  S  Y  L  L  S  L  *  N  N  E  R  L  I  W  N  S  C  P  N  P  R  L  I  R :   G  T  G  R  Q  V  E  T  A  M  W  L  *  Q  Q  Q  G  L  A  Y  V  A  S  L  L  V  M  *  V  M  R  S  M  D  G  S  S  L  M  C  L  V  M  K  V  L  V  *  L  G  *  M  S  G  V  K  H  L  I  F  Q  V  L  K  M  E  H  Y  C  A  G  C  *  W  T  L  R  R  D  M  A  F  A   : V  V  Q  I  L  V  Q  I  L  L  S  V  G  *  P  D  Y  L  L  K  *  R  W  L  L  E  N  Q  R  S  S  F  A  M  V  M  T  L  M  N  S  P  L  A  F  L  N  L  L  L  S  V  L  W  N  L  G  H  L  S  F  L  T  L  D  H  E  V  G  V  L  S  Q  E  D  L  K  N  K  E  Q  L  E  S  C  *  R  *  V  K  C  F  Y  *  L  L  R  R :   L  H  L  *  L  V  S  K  I  Q  F  *  R  A  R  I  C  S  I  T  E  F  V  L  S  G  *  L  L  R  W  V  R  R  V  Q  F  *  S  L  S  R  A  *  R  V  H  L  L  S  R :   S  I  *  *  T  L  W  A  V  E  I  V  L  W  L  L  L  H  L  D  S  Y  M  T  C  P  *  V  I  H  *  P  L  Q  M  Q  W  V  L  Q  L  L  R  G  V  V  L  V  E  M  L  P  V  W  G  R  S  R  N  Y  *  R  N  Q  I  *  T  R  M  R  S  F  G  M  K  Y  *  M  I  M  *  T  P  E  M  *  L  Y  C  Q  K  W  L  *  M  V  I  V  R  *  T  V  S  P  Y  K  R  W  Y  P  K  C  C  P  S  L  N  L  R  Q  R  *  L  A  P  S  N  R  R  C  S  F  S  G  T  N  K  F  C  C  C  Y  H  H  S  D  *  L  L  H  I  H  P  L  K  R  N  A  *  V  A  G  A  L  A  C  G  L  *  S  A  Q  L  Y  *  G  C  Y  L  A  G  G  R  T  D  S  F  V  D  R  V  R  G  V  Q  I  L  F  M  I  C  L  H  A  C  E  R  D  W  Q  I  D  *  A  L  V  F  E  R  N  C  M  I  K  L  L  V  I  P  D  F  F  Y  V  H  T  *  E  A  V  P  C  F  L  *  F  D  S  Y  I  *  H  T  E  E  N  M  G  N  L  F  Y  N  G  S  H  I  A  I  H  F  *  F  R  M  S  R  R  H  Q  F  M  F  A  T  R  P  Y  Y  H  L  *  Y  K  Y  L  G  T  H  F  V  C  P  F  P  L  </first_frame>
            <second_frame>  A  C  L  P  F  K  Q  G  G  T  E  N  F  L  N  A  Y  S  R  R  H  I  L  Q  T  F  I  Q  W  L  V  L  S  Q  S  R  N  L  P  K  P  *  F  C  N  S  P  T  Q  K  Q  A  S  L  F  H  S  *  L  Q  R  R  *  N  S  I  S  *  T  P  P  K  H  *  F  C  Q  Q  W  L  H  K  Y  R  R  C  C  Q  R  C  *  Y  C  Y  A  W  E  S  L  C  R  Y  C  S  Q  C  T  G  V  T  S  *  A  F  R  T  T  K  G  L  S  G  T  V  V  Q  I  P  A  *  Y   : A  V  L  G  G  R  W  K  L  Q  C  G  Y  S  S  S  K  A  W  P  T  L  H  L  C  W  S  C  R  *  *  D  L  W  T  V  P  H  *  C  A  *  *  *  R  Y  *  Y  S  W  D  E  *  A  E  *  S  T  *  S  F  K  F  *  K  W  N  T  T  V  L  G  V  S  G  P  F  A  E  T  W  L  L  Q  :  S  C  R  F  *  C  R  S  C  F  Q  L  D  D  Q  T  I  Y  *  S  K  D  G  Y  *  K  I  K  D  P  L  L  Q  W  L  *  L  *  *  T  L  P  *  P  S  *  I  C  S  *  V  C  C  G  I  W  D  I  Y  L  F  *  P  W  T  T  R  *  E  S  Y  R  R  K  T  *  R  T  K  N  N  W  K  V  V  D  D  E  *  S  A  S  T  D  F  *  G   : G  C  I  F  N  W  Y  Q  R  S  N  F  S  G  P  G  F  A  Q  *  R  S  L  Y  *  V  G  D  C  *  D  G  S  E  G  F  N  F  N  H  *  V  E  H  N  V  C  T  C  F  Q   : G  Q  Y  N  R  H  C  G  L  W  R  *  F  C  G  C  C  C  I  W  I  H  T  *  L  A  L  E  L  Y  I  N  P  C  K  C  S  G  C  C  N  C  Y  G  V  W  C  W  *  K  C  C  Q  F  G  E  G  P  G  T  I  E  G  I  K  F  K  R  G  *  E  V  L  G  *  S  T  E  *  *  C  E  L  P  R  C  N  F  T  V  K  N  G  C  K  W  *  *  S  G  K  P  C  L  P  T  K  G  G  I  R  S  A  A  Q  A  *  I  C  A  K  D  D  W  L  L  Q  I  D  D  A  V  F  L  G  Q  I  N  F  V  V  V  T  I  I  L  I  D  C  C  I  F  T  P  *  K  E  M  H  E  L  Q  V  L  *  L  A  D  Y  E  V  H  S  C  I  R  A  A  T  L  L  V  V  E  P  T  V  L  L  I  E  *  E  V  S  R  Y  Y  S  *  S  A  C  M  H  A  R  G  I  G  R  *  I  E  R  *  C  L  R  E  I  A  *  S  S  C  L  *  F  L  I  F  S  T  C  T  H  E  K  L  C  L  A  S  C  N  L  I  L  T  S  N  I  Q  K  K  T  W  A  I  C  F  T  M  E  A  I  *  P  Y  I  S  S  L  G  *  V  E  D  T  N  S  C  L  Q  H  V  H  I  T  I  Y  D  T  N  T  W  A  L  I  L  C  V  P  S  R  Y </second_frame>
            <third_frame>   L  A  F  P  L  S  R  E  G  L  R  I  F  *  M  H  T  H  A  A  I  S  F  K  P  S  S  S  G  L  F  S  L  N  P  G  I  F  Q  N  P  S  F  V  I  R  P  L  R  N  K  L  R  Y  S  I  L  N  C  R  G  V  E  I  P  F  P  K  L  R  P  S  I  N  S  V  N  N  G  S  T  S  I  A  A  A  V  K  D  V  D  I  A  T  L  G  N  L  C  V  D  I  V  L  N  V  P  E  L  P  P  K  P  L  E  Q  R  K  A  Y  L  E  Q  L  S  K  S  P  P  D  T  :  R  Y  W  E  A  G  G  N  C  N  V  A  I  A  A  A  R  L  G  L  R  C  I  S  V  G  H  V  G  D  E  I  Y  G  R  F  L  I  D  V  L  S  D  E  G  I  S  I  V  G  M  N  E  R  S  E  A  L  N  L  S  S  S  E  N  G  T  L  L  C  W  V  L  V  D  P  S  Q  R  H  G  F  C  S :   R  A  D  F  S  A  D  P  A  F  S  W  M  T  R  L  S  T  E  V  K  M  A  I  R  K  S  K  I  L  F  C  N  G  Y  D  F  D  E  L  S  P  S  L  L  E  S  A  L  E  C  A  V  E  S  G  T  S  I  F  F  D  P  G  P  R  G  R  S  L  I  A  G  R  P  E  E  Q  R  T  I  G  K  L  L  T  M  S  E  V  L  L  L  T  S  E  E  :  A  A  S  L  T  G  I  K  D  P  I  L  A  G  Q  D  L  L  N  N  G  V  C  T  K  W  V  I  V  K  M  G  P  K  G  S  I  L  I  T  K  S  S  I  T  C  A  P  A  F  K  :  V  N  I  I  D  T  V  G  C  G  D  S  F  V  A  A  V  A  F  G  F  I  H  D  L  P  L  S  Y  T  L  T  L  A  N  A  V  G  A  A  T  A  T  G  C  G  A  G  R  N  V  A  S  L  G  K  V  Q  E  L  L  K  E  S  N  L  N  E  D  E  K  F  W  D  E  V  L  N  D  N  V  N  S  R  D  V  T  L  L  S  K  M  V  V  N  G  N  S  Q  V  N  R  V  S  L  Q  K  V  V  S  E  V  L  P  K  L  E  F  A  P  K  M  T  G  S  F  K  *  T  M  Q  F  F  W  D  K  *  I  L  L  L  L  P  S  F  *  L  I  V  A  Y  S  P  L  K  K  K  C  M  S  C  R  C  S  S  L  R  I  M  K  C  T  V  V  L  G  L  L  P  C  W  W  S  N  R  Q  F  C  *  *  S  K  R  C  P  D  T  I  H  D  L  L  A  C  M  R  E  G  L  A  D  R  L  S  V  S  V  *  E  K  L  H  D  Q  V  A  C  D  S  *  F  F  L  R  A  H  M  R  S  C  A  L  L  L  V  I  *  F  L  H  L  T  Y  R  R  K  H  G  Q  S  V  L  Q  W  K  P  Y  S  H  T  F  L  V  *  D  E  *  K  T  P  I  H  V  C  N  T  S  I  L  P  F  M  I  Q  I  L  G  H  S  F  C  V  S  L  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0006M22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44981" stop="45331"/>
                    <exon start="46919" stop="47169"/>
                    <exon start="47326" stop="47617"/>
                    <exon start="49860" stop="50012"/>
                    <exon start="50670" stop="51053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHTHAAISFKPSSSGLFSLNPGIFQNPSFVIRPLRNKLRYSILNCRGVEIPFPKLRPSINSVNNGSTSIAAAVKDVDIATLGNLCVDIVLNVPELPPKPLEQRKAYLEQLSKSPPDTRYWEAGGNCNVAIAAARLGLRCISVGHVGDEIYGRFLIDVLSDEGISIVGMNERSEALNLSSSENGTLLCWVLVDPSQRHGFCSRADFSADPAFSWMTRLSTEVKMAIRKSKILFCNGYDFDELSPSLLESALECAVESGTSIFFDPGPRGRSLIAGRPEEQRTIGKLLTMSEVLLLTSEEAASLTGIKDPILAGQDLLNNGVCTKWVIVKMGPKGSILITKSSITCAPAFKVNIIDTVGCGDSFVAAVAFGFIHDLPLSYTLTLANAVGAATATGCGAGRNVASLGKVQELLKESNLNEDEKFWDEVLNDNVNSRDVTLLSKMVVNGNSQVNRVSLQKVVSEVLPKLEFAPKMTGSFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="61762" PGL_stop="60588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61762" e_stop="61702"/>
            <exon e_start="60853" e_stop="60588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.902"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="61762" e_stop="61702" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61701" i_stop="60854" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60853" e_stop="60588" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61762" stop="61702"/>
              <exon start="60853" stop="60588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCTCTTGTACACAGTTCGCACTCAAATCTCTTTCTTCGATTGCGCAAACTTTCAGTCTCT : GAAATGGCTGATGAAAATTTTGAGCAGCCTGAGATGGGTAACTTGCATGACACAGAAAACCTGGATAATATGAATAATGTTCAAGACAATGATAATGTGAATGGCAAGGATAACGTGCACGATGCTAATCACGTGCACGATGCTGATCACGTGCACGATGCTGATGATGTGCATAACATGAATAATATTCATGACTCAGAAGCCATTCCTGCTTTGATTAATGCACCTGAGGAGACACATCATTCTGAAGAGGATAAAGTTACTCC</gDNA_template>
            <first_frame> R  S  C  T  Q  F  A  L  K  S  L  S  S  I  A  Q  T  F  S  L   : *  N  G  *  *  K  F  *  A  A  *  D  G  *  L  A  *  H  R  K  P  G  *  Y  E  *  C  S  R  Q  *  *  C  E  W  Q  G  *  R  A  R  C  *  S  R  A  R  C  *  S  R  A  R  C  *  *  C  A  *  H  E  *  Y  S  *  L  R  S  H  S  C  F  D  *  C  T  *  G  D  T  S  F  *  R  G  *  S  Y  S </first_frame>
            <second_frame>  A  L  V  H  S  S  H  S  N  L  F  L  R  L  R  K  L  S  V  S  :  E  M  A  D  E  N  F  E  Q  P  E  M  G  N  L  H  D  T  E  N  L  D  N  M  N  N  V  Q  D  N  D  N  V  N  G  K  D  N  V  H  D  A  N  H  V  H  D  A  D  H  V  H  D  A  D  D  V  H  N  M  N  N  I  H  D  S  E  A  I  P  A  L  I  N  A  P  E  E  T  H  H  S  E  E  D  K  V  T   </second_frame>
            <third_frame>   L  L  Y  T  V  R  T  Q  I  S  F  F  D  C  A  N  F  Q  S  L :   K  W  L  M  K  I  L  S  S  L  R  W  V  T  C  M  T  Q  K  T  W  I  I  *  I  M  F  K  T  M  I  M  *  M  A  R  I  T  C  T  M  L  I  T  C  T  M  L  I  T  C  T  M  L  M  M  C  I  T  *  I  I  F  M  T  Q  K  P  F  L  L  *  L  M  H  L  R  R  H  I  I  L  K  R  I  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0006M22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61761" stop="61702"/>
                    <exon start="60853" stop="60590"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVHSSHSNLFLRLRKLSVSEMADENFEQPEMGNLHDTENLDNMNNVQDNDNVNGKDNVHDANHVHDADHVHDADDVHNMNNIHDSEAIPALINAPEETHHSEEDKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 12976 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2162 bytes was the average size of a spliced alignment
$ 10392 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2078 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:48:49
-->
