<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:29:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367383" ref_strand="+" ref_description="SGN-E367383 [cLPT-7-K22]">
      <seq>tttctctctctttacgtgtttggcttttcttttatctaaaataataatgtagtaaaaataataattatctccctatattaattctcaaaaaaaaaaattattcataaattaaatttattcgtctcaatcaaccgatcatccacaagcaaaagctaccggtttcttcaccggcaaaacttttccgtataccacacagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactctcttgttcatgctagggaagctggcggcttattattgtcagatgaaggatattgccctagattcataagaatgggtttcctgggctaaatagttcatactagggctttgttggagttgatttgagcttaatattgggcatgtgatcaaattccatttctattggcatatcttgttttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="5563" stop="9324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5863" g_stop="6049" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7998" g_stop="8097" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8098" i_stop="8853" i_length="756">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8854" g_stop="9024" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="455" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E367383" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5863" e_stop="6049"/>
          <exon e_start="7998" e_stop="8097"/>
          <exon e_start="8854" e_stop="9024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATGTTAGTAAAAATAATAATTATCTCCCTATATTAATTCTCAGGAAAAAAAAAGTTATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACA</genome_strand>
        <mrna_strand>TTTCTCTCTCTTTACGTGTTTGGCTTTTCTTTTATCTAAAATAATAATG-TAGTAAAAATAATAATTATCTCCCTATATTAATTCTCA--AAAAAAAAAATTATTCATAAATTAAATTTATTCGTCTCAATCAACCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTTTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCACACAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCTCTTGTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367521" ref_strand="+" ref_description="SGN-E367521 [cLPT-7-K16]">
      <seq>tttctctctctttacgtgtttgtcttttcttttatctaaaataataatgtagtaaaaataataattatctccctatattaattctcaaaaaaaaaaattattcataaattaaatttattcgtctcaatcaaccgatcatccacaagcaaaagctaccggtttcttcaccggcaaaacttttccgtataccacacagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactctcttgttcatgctagggaagctggcggcttattattgtcagatgaaggatattgccctagattcataagaatgggtttcctgggctaaatagttcatactagggctttgttggagttgatttgagcttaatattgggcatgtgatcaaattccatttctattggcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="5563" stop="9313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5863" g_stop="6049" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7998" g_stop="8097" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8098" i_stop="8853" i_length="756">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8854" g_stop="9013" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="444" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E367521" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5863" e_stop="6049"/>
          <exon e_start="7998" e_stop="8097"/>
          <exon e_start="8854" e_stop="9013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATGTTAGTAAAAATAATAATTATCTCCCTATATTAATTCTCAGGAAAAAAAAAGTTATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATC</genome_strand>
        <mrna_strand>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATG-TAGTAAAAATAATAATTATCTCCCTATATTAATTCTCA--AAAAAAAAAATTATTCATAAATTAAATTTATTCGTCTCAATCAACCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTTTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCACACAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCTCTTGTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746202" ref_strand="+" ref_description="SGN-E746202 [GI|47104852]">
      <seq>attcataaattaaatttattcgtctcaatcatccgatcatccacaagcaaaagctaccggtttcttcaccggcaaaacttctccgtatatcactcagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactcacttgttcatatttcttttcgcggagagataaatttattgcttactttcacgtacaatggggcacagaaattcattcaacacgcctccaatatttgggacggaagatgatcagagatggaacattccagagcaggcacctttgccttacgcaaggactggtgttccggaaagcagtaatattgtttatccagtggatagtatgtcaattgacggggcacaccattcttctcaggggcatggctctaggccaagtggatattcttccttgaatccaaatatggaaattccacactgtcagccacaggttcaaggtcctcttcatgacccttttctacattcaggtactggaggctttcatatgatccatgagaattatccacatcaagcatcttcatcagcccatggtggccagacatatcatggggtggatggtggccttgttgacctcacaatgggtagtgggagagggccgtacaaacgaaagagtcctggtatacctgcaggtggcgaaagtggtagtacaagcagatactttgatgctggcagttcatctgatctcccttctgaatcttggcaggagaaacaaaatccagacccccattacacaacttggggtttacatcctaattaccgaggtaatagtctgtctattggaggtgagggttctcagaggaatgtaagaagcagagctgcatttgacctgcaaaataatgtaggaagggctcatataacaagtactccttcacatcactctaacagcagtagaacatccactgattattgtaattcagtgaattatctagctccaagttcgaattcttcagcaagggaatggaaccatactgtcatgccccctgcagctgcccatgggaggaacttcgctcctgatgcaagcttcttttgttatgatatgaaccactatgatatggttaccggcaatatctctacctctctggagatggggaattaccacaatgatttcacctccaacagaacttcccttcctcagcatttacctggcagcttgccatcttcaaggggagtcagaagtagctatagtcaaagatcttcccctacttttaggacttcttcaagctatttgcgtcatgggcatgttgggacttcagatgacggatcacagttgtttgctgaaggttactcctcaagacattcacgaccattgtctactctaggactgcgtagtagtgaccgaaatgggagaactagggtatccagtgataggtacagatcgttggctggtgaggcaggtttccgtgagcaagttgcatctgagggcgtgattattccagaccgctctacttattatgggtccagaagcatgtttgaccagcatagggacatgagacttgacattgacgacatgggctatgaggagcttctggctctgggagaaagaattggccatgtcaatactggcttgtcggaggaactgatttcaaagtgcatgaccgagtcaatttattgttcctcaggccaaaatcatgaggaaggaaattgtgttatctgtctggaagagtatgttaacatggatgatgtcgggacgttgaaatcgtgcatccatgattttcatgttggatgcataagaagatggctgtcaatgaggaacgtgtgtccaatctgcaagaaaactgcgttggatgacgacgatctgaaggaaaaatgatttatttagccatgacttgctgggcattgaacttgtgtaaatatgtatttagaacatttctcaaatggggggaaaactagtatcacctcataagtttgtacagaaaatgtttttcatgtcattagtcgtttctttcaaatgtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="5665" stop="96966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5965" g_stop="6049" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7998" g_stop="8097" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8098" i_stop="17290" i_length="9193">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17291" g_stop="17430" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="325" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17431" i_stop="18110" i_length="680">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18111" g_stop="18848" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="1063" r_length="738" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18921" g_stop="19327" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1064" r_stop="1470" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19328" i_stop="20028" i_length="701">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20029" g_stop="20127" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1471" r_stop="1569" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20128" i_stop="20211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20212" g_stop="20349" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1570" r_stop="1707" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20707" g_stop="21008" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1708" r_stop="2009" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21009" i_stop="21503" i_length="495">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21504" g_stop="21512" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="2010" r_stop="2018" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E746202" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2018</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5965" e_stop="6049"/>
          <exon e_start="7998" e_stop="8097"/>
          <exon e_start="17291" e_stop="17430"/>
          <exon e_start="18111" e_stop="18848"/>
          <exon e_start="18921" e_stop="19327"/>
          <exon e_start="20029" e_stop="20127"/>
          <exon e_start="20212" e_stop="20349"/>
          <exon e_start="20707" e_stop="21008"/>
          <exon e_start="21504" e_stop="21512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACACGACATAAGTTGATGTGAGGGCTTGGGATGAGGACATATTGCAAGTACAGGTGAGGGGTTTTGGTACCTACCTTTCTCAGTCCAGCCATATCTCTATCTATAGTACTTATTTTAAGGTTTCCTCATCTTACATTGTTCTTTTTTTTTTCCAGCTTTTGCTCTAGCATCTTCTTGTTCTTCCTTTCTTTTTTCAATCCCAATCCGGATTTCTTATCACCGTCTCAGATAATTAGGATAGGTCATAATTATATTTCTGATTCTTCTCATCTTTCTCACTGAAAAATAATCTGGGAGCTCCTGCAGGGTATTTATTTGGTGGATAGCTAAATAGCTTTGCTAATGTATAGAACCTCACGCATACATGATGTTGCAAACAACTTTCTGGTCAATCTGGCAGGTTATGAAGAGATATCATTCTTATGGTGTTCTTATCAAGATTGATTAGACTGAGCTGCTCTTATTGCATCTCTTACCCTTAAACCTTTTGAGTGTGAAGAGCTCATAGGAAATAGGTTCTGCTATTCTTGCAGAATTAATGACCTACCGAAAGATGCTTCTTGATGAGGTGAGAAGTAGTTGAAAACCTGAAGTCATTTAGACGCTGCCACTTATTGGGGGGTGAGAGTTTGTTGAAAAACTGAAGTTCATTTTACAGGCTGCCATTAACTGTGGGGAGAGCATTTCTGGAAAACCTGAAGTTCATTCTACAGGCTGCAGCTAACTTTCTGATTAGTTGTGGGATTCCTTTTAACTGCTGGTAGTATGGGGCCACTTTCACTTGGAAAGACTGTCTTGCTTATGCCATTTTTATTGATGATAGGAGATGAAGTTCTTGCTGACCATGCTGCTTCCAGAGCACATTTTTGACTGGTATTTGTTTACTTTTTCTGGAATGGTGGATCTGTTGGTAGTGACACGGGGGCAGATGTGTACGATCTTGTCTGTGAATACTTTGGATTGTTTGCTGGTGAATAGAACTGAATGGTGCACAGTTTGAGTGTGTTGCAACTTTATTACAATATCCCTTCTAAGGTTCAGGGTAGAGATGCTGAGCAGATACTGTAATGCTCAATAGATGCAACATTCACAGTTTTGAGTGTGTTGCAACTTTATTACAATATCCCTTCTAAGGTTCAGGGTAGAGATGCTGAGCAGATACTGTAATGCTTAATAGATGCAACATTCTCTCTATTTTCTCAATGACAGCTGGTTTTATCCTGATTCAATTGTATGCTGGTAATTCCTTTAATTGAGCCTATTGAGCTAGTGTTCCTGTGCTCCTTTGGAGTCTTAGGTTGTAATCTTACTCTATTGATGGCTTAGTTCGAAATAGAGTGAGAGCAATCCTGATCAATTTATTCTCTGAATGGCATCACAAGGCAGAGCTGGGGTCCAATGGAAGGTACATTTTCGTAGTTGTACCACTACGATGTAGCACATTGATGCTAGTATATTGCTAAGTGTGCTGCAACTCCGTAGAACACTTAAACATAATGTTGCTTGGTCTACGGAATATTGGAGGACAACTATCATAGTTGGTTGTGATGAATGAGAAAACACGCGTATTACCAGTTAGCCTCTGTATTTATGGTTGAGCTCCCATTGATGTAAGAAAGTTCTCTAACTAGTAACACATCTATAGCTTGGATGAGTTGTATCTAGTTCTTTGGGGCTCATTGGTACCTGTCACTATTCATCCTTTTGTACTACCCACAATCTTCATGAGGTGGTGCCTCTTATATTTCACTTTGCAAGTAGATGCAATGATGGAAGCTTTTAAAGCCATTTCACAGTTTTTGCTTCTATCCCTATTTTGCACTCTCAACATTTTGTACTAAACTTAGTCAATCATGAAGCATATCTGGTACTGTTAACAAATTTATTTCTTTACTTTCTCCCTCTGACAAGATTATTCTTAGCTAATCTCATACCATCATTATCCATTTACTTTTCTATCTCTCTGACAAGCCAACTTGTTTTGGTGCATTTCATACAAAAGATTGCAATTGCTTCTTTCTAAACTCTCATATGCTCTTTTACACTGGTACATCTCATAAAAGCAACATTAATAAGTGTTTCCAGAGACACTCTCGTACTCCTCCCCCACCCTTTGCTCTTCGTCCTGCATTTCTCTGAGTTCTGAACCTTGAAACAGTCATTATCAGAAAGATTGACGGACACAAAAATTGTAGTGGCTTCTCCTTAATGGAACATATTTCAGTGAGACTGCCATGGGATGAGGGAAACCAAATTGGCCATGTCTATTTGGTGGTATGGCTCGTCAAAGGTACTTGTGGTGATATGTTTCTCTTTTTAGCTTTATTAATGAGCTATCTTTAATATTTCGTGTCATTTTGTTGAAACAGCAGGAGTAGTCAAGTGGTTTAGCTTGTGTTCTTGTTTCCTATTAAATTTTGAGTAGATTCAACAGGAAAGGTCCTAGATATCCGTCTCCAGGATAAGTACAACATATACGTTACATTTTCTAATCCTTACTAAGTCAACATTGAGAAAGAAACTATCGTGACTGCATCAATTTTGGTTAAATTATATGCAATGGATGTATCATTACTATCATTAGCTTGCTTAGTGACATTTGCTCTTTAGGCTCATATATTCAGACAACTTGTCAGCTGTCCATGTGTTGGCTTTATTTTCTGGTTGCTCTGGGTTAATCTTGAACATGAAAGCGGCATAAAGTTTTAATGAGCTTAGAAATGATTCACATCTCTTTACCACAAAGGTCTTCTTACTTTAATCTTGCTTTTGAAATGGATAACACTGTATAATTCAATGATGTTGTTGTCTTTATAATAATACTTCCGCCATTGACCATAACGTACCTTTTTCATGTGAAAGATGCCACTTTTTGTGTAGTCCCAGTTAAATGCTCTTACTTGCCCCCCCCCCCCCCCCTCCCCCCCCTCAAGCAGGAGTATGGTAAGACTTCTTGGAGAATAATTTGGGAATGTCACCAGCCAGACCATCTTATCACCCTAATCATGAAAAGCTTGTATAGTTTCTAGGAAATCTTTCCGCATGTCAATTTTTAGAATTGTATACTTGTCTAAACGTATGTCTGGTGCAATCTGCCCAACCTTTGTATTAAGAATCTCCACAACTATGGCTTTCTTTGCAGTTGTGATTGAAAAGTGATCAGAAAACTCAGCTGGTTAGAATAATACCACCTCACCAACTATCGAGCCAACATCGTGTACTGTTCGGTTCCTAAAAGAGATTCCTTTAAACTTCAGGAAGTCCTCTCTTTTTCATTTTTCTCCAAAAAAAAGAAGTCCTCTCTTTTTCATTTTTCTCAAAAAAAAAAAAAGAAGTCCTCTCTTTTTCATGATCTTTTCCATTAGCTTGTTTTATAAGGGTGGTTCTCCTCTTTGAATCATCCAAGATGTATGCGTTTATACATTTCATTTATCAGTTCCCTCCTTATAGCACTTTCATCTATTTCTATCTCCCATAACCATCCCAAAAGGGCTCAGTTGAACATAGTTATTTACAGATGCTAATGCTTCCATTCTTACCGAGGCTCATCTGTTCGTATAGGAGCTCTGTCTCTATCCAGCTTTCGCCAACTCACCTGATGAAAATTTCCTATCTCATTAGGTTTTCAGTATTTTAAGGCACCAGTTCTACAATATGAAAATGTACATAAGAGCTTTTTCTGTCAAATACTTCTCCCTCCTTTTGACATTACTCTTCTTTTTCTATCCTTTCAATACTTTCTTGAGCTATAGTAGCCAAAGCTCTCCCTCCTTGAATTTGCCTCATAGGGAAGATCCAGGCTGTTCATAAGGAGTTCATGTGCAATCACCCCTTGGTAGTAGTTAGAACAATGGTTATTATGCACCTCCCAATGGTTTGAACTCCGATTTTGTTGTACCTGTTCTGAGCCAATACTCTGCCACCAACTATGTCAAGGTGTTGAACGGTGAACAGATTTGTCTCGTTTGAGGATCTTAGAAAATTAGTATCATCTGCTTATATTAGATCTGATTTTCAGTCTTATGGTCTACTGATAACTTTTATCAGAAAACCATTCAGACATGCTCCATTTATTGGTTTTCCGGCAGCTTATTGATCATCTCAATGGCAAAGCAGAAAAGTGATGGGGATAAATGATCTCTGTGTGAACATCCTTTGCTATTCCTGACTAAGTTCAAAGTTGCTAAGTTAAGATTACCGTTTAAGTAGAATCTATGCTTTAATTTAAAGAAAGATATAATGTAACTGGAACATAGAAAAGAAATGGTTAGGCAGCTCATGTTTGTTGCTTAAGTGCAATTGTGAAGGTGATTCAGTTTGTAAGTATTGTTTTTTGTGAAAAATAACTTCTTTTTTTGAAAATGGTAATGTTGTATTCTTCAGCATTAAGGATATGCTAGTGACCTGCAAACAGAGGGGAACAAAAGAAGAGGAAGGAAAAAAAAATACCTACAAGGATCCTAATAATAACTTATTTCTGGAGTACTCCGAAAAGGAGGTGGCAGGTGACATCTTCAACTTGAATACTTGTGTTAGGCATGGAAATGGTTTAAGTAATAAAACCTAATTCAGGTTGAACTGTATTAATCGTCTCATAGGTTTTTAACTTTTCTCTTGAAGGGACGAAGAATGTAAAGACAAGAAAGAAAAAATTCTATGTTGATGCTAATCTAGACCACAATAGTCCAGTTGGAGACATAGAGCTTCCTTTATTTTCTATACCTATCAAAAACCAAAGAAAATGTTTCTTTCTTTTAATCATTGACCCAGGCATTATAGTCCTTCTATCACTTAAGAGCCTAACTATATGTACGGGCGACAGAAGATGATACAAGTAGTATGACAACAAGAGGAATGAATGTATTTGAGAAGTAAATATCTACTTTCTCTTTGGAAGACTTTCTCCATTAAGTGAGCACTGAAAAGGGAGCCTTCCCTGCTATGTATATGAATTGGCGCTTTACATTATTATTGGATAGATAGCAATTTGTTTCTACATGTGATTTTATCTTTTTGGACCTTTTTATGTTAAGGAGTAAACCTTTTGCCTAGACAGTCCTGCTTTTTATTTACTTCTATAGCTTTGTTGGACCTCTGCGGTAAAAGAGAAATTCTATATTGTACCTCTTATTATTTGTCGAGGTTCCTCAGCGAGGTTTTAGCTTTTGAATTATGAAGAGGATTAAAAGAAAAAAAAAGAATACTAATTGAGTAAGTAGTGAGAACATATATGATGATTGAGAATATTTTAACTAAATTATGTTTAAAATTCTTAGTATTCTTAATTATGACACAATCATGAAGAATGCTTCCTACTATTAACCTAAATCTTACAAAGAATAGCGACATAACTCTCTCAACTTTCAGCTCAAGGTGGTGAAATAACTTGAGTCTTCTAACTAACAAAAGAAATACTAAAACAAAATCACAGAAATAGTAATCAATCACCCAAACAGTGTTGGCGAAGTAGTATATGAACAAGTAAACAATCACTGGAAAGAAAGGGCTTTGAGATCTTTCCTCGGGAATATGCTGGTAATTATATTGTGAAAGGAATTGCTTATAACACACACAAAAAAAGAAATTTATACTCAATTAGCTGCTAGACTCCCTACATGCCTAGGATGTGATATAGTTTTTTTTTTAACTTTGCCAGATTGTACAGAGCTCCCAACACATTCTTAGTGCTGTTTTAAATACAATCTTTGCCATTTTCCAAAGAAAATAAAATCTATACTCGATTAGTGCAAATAGCTGCAGTGACATCAACTTTTAAGACATCATTAGTGTAGCTTGAATTGGCACCAGAAGAGTAATAAAGAAAGTTGTGGGAACAATGTTCGAAGGAGCGATAACCAAATTTCAATATCATGAAGAAAAAGATAGGTGGCAATATTTGGATGGTTAGCAACACATGAAGCATGTTTAACAATAAGATTAGCTTCAGTGGAGACTCCATGAATCAGATGTTTTCTATATGAACAATCCCCTGGATTAGTCATCTATGACTTCATTGCAGCCAACGTGTCAAATATGGGCTTGTTTTTAGACATAGCTGGTGTTTTTTGGGTTGTGCACAGGAACTGAAGCAGTTGTTGAACTGCTGGCAGAGATAGAAAACAGACAGAATAGACACAAAACATAATTATGTGACATTGGTGAGCTTTCAAAAATAGCATGTTAACAGTTAGGGATGTTCTAGATTCCCTGAACCATGGTTAAGTTCTTTTGTATTTTCTTTGGTACTCACTTGGTACGGGTTAGTAAGAGAGCACTTCACTTAATTAATAAAGAAACTATAAAGAAAAAGCCGAGGAGAATAAGTTCTAGAGAATATTTTACTTGAAGGTTGCTAGAAGAATGACTAGAATAGTGTGCTTAGATTTGTCGTGCCAATACATTCATTGCCAAGGCAAATAAAAATGGTCTAAGAGTTGATCTTTGATGCCACTTCATAGGAAGTGCTTTGAGTCTCTTCCCGTTGTCCTAACTCAGGCCTTGGCTCTACCGTATGCACTAGTGTATGCCGTACACCTTTAGCCTTCAGCACTTCCATCAGAACTTTGTCGTATGTTGGGTTGTAAGCCCCTCTTCTTCTCCTTATATTGTTCCAATAATTTCCTAACTAGATGAATGAAACTTTACGGCATGAATCTGAACTGGTTCTCGAAAATAGAAACGCCTGTCCTCACCTTTATCTCCATCACCCTCTCTTAAATTTGTGGCTTTGGAGTTTATACCTCTATAGTTGTTGCAATGTTGAAAGTCTGTTGTACTTGTACAACAGATCATTGCACTCCACCTCTATTTTTTCGGACACTATTGCTGCCTTAAAACACGACATTAAACAATTCAGTCAGCCACTTCATACCTTCCTTGCCTGTGCTCTTTTCAAATTCCATCAGGATCTTGTCCGGCTAATCGCTCTTTCCCTGTGCATCCTTCGAATCACACCCTTAACATTCACAACCTTTATTCACCCACATGCCCAAAATTGTGACGCTTCTCGTAATTCTCCAAGTCTCTTAGCACAATGTCTCGATCTCGCCTTTTTGTTCAAGAGTTTGTGGAAATATAATTGTCACCTCCGTCTAATGAGTGCCTCCACCACTAGTATTTTGTCGTCCTCATTCTTGATGCACTTTACTTGTCCCTCCGGCCCTCATCTATTAGGCATTGTGTAGCCCATACAATTTTCATCCCCACCTTTGATCTTTAGTTTTACATTCAATTGTTTAGAAGTGGTCATTTTTGTCGTTGTAATTACTAAATTACCGCCTTCTTTGTCTTATATCTTCCCTTATGTGTCCGCTATTCCTCTTTATTCTTACTCTCCACCATCTTCACTTCACCACCTTTTTTGCTTCCATTTACCTTGGTCGTCCCCATTCCACAACCAATCCCCTCTATGTCCACTAAAGCTACCCCTCGAGACCTAATCATGTCTTTCAGTGTAAGAAGGTTGCTACTTCTAGATGTCTGATCTTGATATTAATTTAGACCTTTATCCAAACAAAATATAAATTTAATCCAACACCTAATCCTGAGATGTCCCACTTATCCCATCAACTTGATGTTATTTTATCTCACCTCCCAAGTGAGATGAAATAGTCAAAGGGTTATTTTACCAGGACTGCAGTCCCGGCCTCCCGGGATAGCTTAGTCCGTGAACCATACGAGCTCACGTTTAACTAATCCTGCGTGCTGATATGTAAGTTCCACATTCTGTGAGATTTAATTGTGGCTTTCAGTAAAAAGAATTCTACCACATCTAGATGTCTTATCTTTGATTATTTTACGTGAAGGAACTTGACAATTATAGATCAAGCTTTTCTGTTTTGTTATGAAATCCCAATCTTATTCCATGACTTTCATAAAAATTACTGTGATGGCATTTTTTCTCTGCTGACTTCTATTTGTTATCAGTAAGTACGCATTTTGGCCAAACAGGTCCTAAGTTTCTGTAAGAAGATATGTTTGCGTAGGTTTGTAGAAATAGAAGTCTTTAAGTTTGTGTGATAAGAAATTGTATAGAATTCATGTCGGGGTTCTAAAGATAAGGGTAGATCGACAGTACTTTTCCAATACGTTACTTTGTGCACTAAAAAGGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGTTCATGTGGATCTTTGATGTGTCTTTTTGTGGTGTATAGCGTGTCACCCGAGTAACTGTTTATATTCCTTTCAGTATGAAGAAAAAAATGACGATGTGACTCCTGTTATTTGATTGCAGATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACGGTAACTACTGATATTCCTTTTAGGTGTACAGATTTCGTTTTAAAATAAAGCTTGACTTATCTTGCGTCTTATTAAGTTTTGTCTTGAATTTGTCTCTATTAGTAAATCCATCACATGTCTTGGAGCTGCAACTTCATAACATCCATTAGCCCTCTCCATCTAAGCATATCATAATGGTTCCTTTTCATTCTTTCCCTCCCTTCGGTTATTAACGTGTAATGCCCATAAACTCGTTAAATTATGGAGATGATCCTATCATCACATTAGTGCTGAAATTATTAAATCATTCAATACTCCATTTTTATAAGATGGAGAATCCATGTGGTGAGATGATGTGTCCTTCTGGTGCTTCATGATTGATCGTCTCCTGTAGGCAAATTGAATTAAAATTGGTTCATGTAAAATCTACCTACATACATACAGAACCAGTGGATGGCCTTTGAACTAGACTGTTGGACTGAAAGAGCAGAGTTTGTCTTTTGTTTAAAGGAACTGACCTTGGCTAAACATGGAAATTACCAATCTCTTGTGGAAGTGCTGAGGGGTAGTGAACAAAATAACGCTTCTGGCTGTATAAATTGGAAGTATACCTTTGTTGCCATTTATATAGTCTGAAATAGGGAGGACATAAATAAACAGTAAAGAGCCTTCTCATGTTAATGTCTCCTTTTTAATTGCAGCAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTGGTTAGTTTCTTAAATTGTTTTGTCATCCTTTGCTGTGTTTTGATTTTAATAGTAATATTTTGTTAACTGCAGATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAGGTGTGTATGCTCATCTTATACAAGATATTGGCATGTCGTCCTTTTGTGAGGGGCTTAGCTTCTGTCTAGGCTCCCTATATCAAATACACAAGTCTTTTGCATCATGGGTGTGACTAGTTCTCTTGCATTGTGCCACATGAATGTCCAGTCTTTTGTTCTTCTTTTCCTCTTACGAAAATATGACCTTTCTGCTTCATGCCAGAAGAATGTCCCAGTCTTATTTTGCTTTACATGTGTGTATATGTATTGGTGTAAATCCTTTTCAATGTAAATCATAGATGCTACCCAGGTGTATTTTGTGCATTTGTTTGATCAGCTAATGTAAGGGAAAATGCGCTTCACTTTGAAATATCAACTGGGAATATGCATGCTGGTATATTTTTGATATGTAGGTCTGTGTCATCAATTTAAGCTGTTTATGTTTACTGTTTGACTTGTGATCCTTCTTACATACAATCAGTCTTGATGAAATTCATTCAAGGATCCTTAATTTTTTTCATCAATTTTTATTACTCATAATTTAGTGGATTTATTTTGCTTTCTTGTATGGACACTTGTGTATTCCAATCTGGCATAGTGGGGAATACAAATAGCGGTAGATGGTAACTTGGCTTAAATATGATATTTTCGTTCATCATTTCTACCATCTCTGAACCATAACTCCTTTGAGACATGTTGAATGTGAAACTTTGGGCTTTCAGGGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAGGTAAGTTCTGAAACTCTACTTTGTTTTGCTTTCTGTTTTCATCTTGCAGCCATCTGCTCAGCTTTGATACTTTGACATGAACAGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTGGTGAGTATTGTTATCTTGTCAGAAATGTATATAATGCAGGTCAAATAGTAGATATAACGACTTCAAGCACTTTAGATCCTTCCTTTGAGTTTACGCGATGAGTTTAAGTTCTCTATACTCCAATAGCATAAAAAATATTTACACAATCATTGTGATTTATTAGGTAGTTATCTGTAACCTGTTAAAAATGGTGATTAACATGCTTAAAGCCTTTCCATCATTATCACTCCGTGCGAGTTCACTCGTTGATACTAGACTCTACGTTGTGCAGCTTTTACCAGTCTATTAGTTTGTATGGTGCTTTTGCTTTTGTTACAATTCTGACAAGTGCATTTCGTATGCCTTTGCATTTGACAGGAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCTAAAGAATCTCCTTATTACCTCTTCTCTGTTTTACTTTCACTCTCTTATCAAATCGAAACGTAAGCTAGACCTGTGAAAGTCAAGCACTAGTGCGGGGGACCTGAGAGGCGGTGGTTTACCTTGCGGTGGATGTCAGCGGTTCGAGTTCGGAAGGTTCCTTTCTTCCCTCCGCCTTTACGGGGACGTAAGAGAAGGTACCTTCTTTATTCCTCTTCCTTAATGCGGACAATATTACACATATATAATTTTAAGTATTCACAAGTAGATCTGTATAAGTAATATGTGTGTCCTATGTGGCTATGTGACATAATATATGTTGGACGATATGTAGGATGTCACGTATGATATGAATTACCAGGTAGGATGTCAAGTAAGACACACGTGTTTACTTGTTCAACTCTAGGTTAAGAGGATGTCTAGATTAACTTTAAAGTTGGTCAAACTTACTTTCAAGTCGGTTTTCGATTTGTAAAGTGTTTGACAAATATAAAAATGAATTTAAAAAAAAA</genome_strand>
        <mrna_strand>ATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG........................................................................ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAG....................................................................................GAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG.....................................................................................................................................................................................................................................................................................................................................................................GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAGGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730084" ref_strand="+" ref_description="SGN-E730084 [LA23AA10]">
      <seq>ggtttcttcaccggcaaaacttctccgtatatcactcagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactcacttgttcatcattaaggatatgctagtgacctgcaaacagaggggaacaaaagaagaggaaggaaaaaaaaatacctacaaggatcctaataataacttatttctggagtactccgaaaaggaggtggcagatttcttttcgcggagagataaatttattgcttactttcacgtacaatggggcacagaaattcattcaacacgcctccaatatttgggacggaagatgatcagagatggaacattccagagcaggcacctttgccttacgcaaggactggtgttccggaaagcagtaatattgtttatccagtggatagtatgtcaattgacggggcacaccattcttctcaggggcatggctctaggccaagtggatattcttccttgaatccaaatatggaaattccacactgtcagccacaggttcaaggtcctcttcatgatccttttctacattcaggtactggaggctttcatatgatccatgagaattatccacatcaagcatcttcatcagcccatggtggccagacatatcatggggtggatggtggccttgttgacctcacaatgggtagtgggagagggccgtacaaacgaaagagtcctggtatacctgcaggtggcgaaagtggtagtacaagcagatactttgatgctggcagttcatctgatctcccttctgaatcttggcaggagaaacaaaatccagaccccctttacacaacttggggtttacatcctaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="5723" stop="18891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6023" g_stop="6049" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7998" g_stop="8097" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="127" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8098" i_stop="13404" i_length="5307">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13405" g_stop="13526" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="249" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13527" i_stop="17290" i_length="3764">
            <donor d_prob="0.211" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17291" g_stop="17430" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="389" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17431" i_stop="18110" i_length="680">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18111" g_stop="18591" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="870" r_length="481" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E730084" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6023" e_stop="6049"/>
          <exon e_start="7998" e_stop="8097"/>
          <exon e_start="13405" e_stop="13526"/>
          <exon e_start="17291" e_stop="17430"/>
          <exon e_start="18111" e_stop="18591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACACGACATAAGTTGATGTGAGGGCTTGGGATGAGGACATATTGCAAGTACAGGTGAGGGGTTTTGGTACCTACCTTTCTCAGTCCAGCCATATCTCTATCTATAGTACTTATTTTAAGGTTTCCTCATCTTACATTGTTCTTTTTTTTTTCCAGCTTTTGCTCTAGCATCTTCTTGTTCTTCCTTTCTTTTTTCAATCCCAATCCGGATTTCTTATCACCGTCTCAGATAATTAGGATAGGTCATAATTATATTTCTGATTCTTCTCATCTTTCTCACTGAAAAATAATCTGGGAGCTCCTGCAGGGTATTTATTTGGTGGATAGCTAAATAGCTTTGCTAATGTATAGAACCTCACGCATACATGATGTTGCAAACAACTTTCTGGTCAATCTGGCAGGTTATGAAGAGATATCATTCTTATGGTGTTCTTATCAAGATTGATTAGACTGAGCTGCTCTTATTGCATCTCTTACCCTTAAACCTTTTGAGTGTGAAGAGCTCATAGGAAATAGGTTCTGCTATTCTTGCAGAATTAATGACCTACCGAAAGATGCTTCTTGATGAGGTGAGAAGTAGTTGAAAACCTGAAGTCATTTAGACGCTGCCACTTATTGGGGGGTGAGAGTTTGTTGAAAAACTGAAGTTCATTTTACAGGCTGCCATTAACTGTGGGGAGAGCATTTCTGGAAAACCTGAAGTTCATTCTACAGGCTGCAGCTAACTTTCTGATTAGTTGTGGGATTCCTTTTAACTGCTGGTAGTATGGGGCCACTTTCACTTGGAAAGACTGTCTTGCTTATGCCATTTTTATTGATGATAGGAGATGAAGTTCTTGCTGACCATGCTGCTTCCAGAGCACATTTTTGACTGGTATTTGTTTACTTTTTCTGGAATGGTGGATCTGTTGGTAGTGACACGGGGGCAGATGTGTACGATCTTGTCTGTGAATACTTTGGATTGTTTGCTGGTGAATAGAACTGAATGGTGCACAGTTTGAGTGTGTTGCAACTTTATTACAATATCCCTTCTAAGGTTCAGGGTAGAGATGCTGAGCAGATACTGTAATGCTCAATAGATGCAACATTCACAGTTTTGAGTGTGTTGCAACTTTATTACAATATCCCTTCTAAGGTTCAGGGTAGAGATGCTGAGCAGATACTGTAATGCTTAATAGATGCAACATTCTCTCTATTTTCTCAATGACAGCTGGTTTTATCCTGATTCAATTGTATGCTGGTAATTCCTTTAATTGAGCCTATTGAGCTAGTGTTCCTGTGCTCCTTTGGAGTCTTAGGTTGTAATCTTACTCTATTGATGGCTTAGTTCGAAATAGAGTGAGAGCAATCCTGATCAATTTATTCTCTGAATGGCATCACAAGGCAGAGCTGGGGTCCAATGGAAGGTACATTTTCGTAGTTGTACCACTACGATGTAGCACATTGATGCTAGTATATTGCTAAGTGTGCTGCAACTCCGTAGAACACTTAAACATAATGTTGCTTGGTCTACGGAATATTGGAGGACAACTATCATAGTTGGTTGTGATGAATGAGAAAACACGCGTATTACCAGTTAGCCTCTGTATTTATGGTTGAGCTCCCATTGATGTAAGAAAGTTCTCTAACTAGTAACACATCTATAGCTTGGATGAGTTGTATCTAGTTCTTTGGGGCTCATTGGTACCTGTCACTATTCATCCTTTTGTACTACCCACAATCTTCATGAGGTGGTGCCTCTTATATTTCACTTTGCAAGTAGATGCAATGATGGAAGCTTTTAAAGCCATTTCACAGTTTTTGCTTCTATCCCTATTTTGCACTCTCAACATTTTGTACTAAACTTAGTCAATCATGAAGCATATCTGGTACTGTTAACAAATTTATTTCTTTACTTTCTCCCTCTGACAAGATTATTCTTAGCTAATCTCATACCATCATTATCCATTTACTTTTCTATCTCTCTGACAAGCCAACTTGTTTTGGTGCATTTCATACAAAAGATTGCAATTGCTTCTTTCTAAACTCTCATATGCTCTTTTACACTGGTACATCTCATAAAAGCAACATTAATAAGTGTTTCCAGAGACACTCTCGTACTCCTCCCCCACCCTTTGCTCTTCGTCCTGCATTTCTCTGAGTTCTGAACCTTGAAACAGTCATTATCAGAAAGATTGACGGACACAAAAATTGTAGTGGCTTCTCCTTAATGGAACATATTTCAGTGAGACTGCCATGGGATGAGGGAAACCAAATTGGCCATGTCTATTTGGTGGTATGGCTCGTCAAAGGTACTTGTGGTGATATGTTTCTCTTTTTAGCTTTATTAATGAGCTATCTTTAATATTTCGTGTCATTTTGTTGAAACAGCAGGAGTAGTCAAGTGGTTTAGCTTGTGTTCTTGTTTCCTATTAAATTTTGAGTAGATTCAACAGGAAAGGTCCTAGATATCCGTCTCCAGGATAAGTACAACATATACGTTACATTTTCTAATCCTTACTAAGTCAACATTGAGAAAGAAACTATCGTGACTGCATCAATTTTGGTTAAATTATATGCAATGGATGTATCATTACTATCATTAGCTTGCTTAGTGACATTTGCTCTTTAGGCTCATATATTCAGACAACTTGTCAGCTGTCCATGTGTTGGCTTTATTTTCTGGTTGCTCTGGGTTAATCTTGAACATGAAAGCGGCATAAAGTTTTAATGAGCTTAGAAATGATTCACATCTCTTTACCACAAAGGTCTTCTTACTTTAATCTTGCTTTTGAAATGGATAACACTGTATAATTCAATGATGTTGTTGTCTTTATAATAATACTTCCGCCATTGACCATAACGTACCTTTTTCATGTGAAAGATGCCACTTTTTGTGTAGTCCCAGTTAAATGCTCTTACTTGCCCCCCCCCCCCCCCCTCCCCCCCCTCAAGCAGGAGTATGGTAAGACTTCTTGGAGAATAATTTGGGAATGTCACCAGCCAGACCATCTTATCACCCTAATCATGAAAAGCTTGTATAGTTTCTAGGAAATCTTTCCGCATGTCAATTTTTAGAATTGTATACTTGTCTAAACGTATGTCTGGTGCAATCTGCCCAACCTTTGTATTAAGAATCTCCACAACTATGGCTTTCTTTGCAGTTGTGATTGAAAAGTGATCAGAAAACTCAGCTGGTTAGAATAATACCACCTCACCAACTATCGAGCCAACATCGTGTACTGTTCGGTTCCTAAAAGAGATTCCTTTAAACTTCAGGAAGTCCTCTCTTTTTCATTTTTCTCCAAAAAAAAGAAGTCCTCTCTTTTTCATTTTTCTCAAAAAAAAAAAAAGAAGTCCTCTCTTTTTCATGATCTTTTCCATTAGCTTGTTTTATAAGGGTGGTTCTCCTCTTTGAATCATCCAAGATGTATGCGTTTATACATTTCATTTATCAGTTCCCTCCTTATAGCACTTTCATCTATTTCTATCTCCCATAACCATCCCAAAAGGGCTCAGTTGAACATAGTTATTTACAGATGCTAATGCTTCCATTCTTACCGAGGCTCATCTGTTCGTATAGGAGCTCTGTCTCTATCCAGCTTTCGCCAACTCACCTGATGAAAATTTCCTATCTCATTAGGTTTTCAGTATTTTAAGGCACCAGTTCTACAATATGAAAATGTACATAAGAGCTTTTTCTGTCAAATACTTCTCCCTCCTTTTGACATTACTCTTCTTTTTCTATCCTTTCAATACTTTCTTGAGCTATAGTAGCCAAAGCTCTCCCTCCTTGAATTTGCCTCATAGGGAAGATCCAGGCTGTTCATAAGGAGTTCATGTGCAATCACCCCTTGGTAGTAGTTAGAACAATGGTTATTATGCACCTCCCAATGGTTTGAACTCCGATTTTGTTGTACCTGTTCTGAGCCAATACTCTGCCACCAACTATGTCAAGGTGTTGAACGGTGAACAGATTTGTCTCGTTTGAGGATCTTAGAAAATTAGTATCATCTGCTTATATTAGATCTGATTTTCAGTCTTATGGTCTACTGATAACTTTTATCAGAAAACCATTCAGACATGCTCCATTTATTGGTTTTCCGGCAGCTTATTGATCATCTCAATGGCAAAGCAGAAAAGTGATGGGGATAAATGATCTCTGTGTGAACATCCTTTGCTATTCCTGACTAAGTTCAAAGTTGCTAAGTTAAGATTACCGTTTAAGTAGAATCTATGCTTTAATTTAAAGAAAGATATAATGTAACTGGAACATAGAAAAGAAATGGTTAGGCAGCTCATGTTTGTTGCTTAAGTGCAATTGTGAAGGTGATTCAGTTTGTAAGTATTGTTTTTTGTGAAAAATAACTTCTTTTTTTGAAAATGGTAATGTTGTATTCTTCAGCATTAAGGATATGCTAGTGACCTGCAAACAGAGGGGAACAAAAGAAGAGGAAGGAAAAAAAAATACCTACAAGGATCCTAATAATAACTTATTTCTGGAGTACTCCGAAAAGGAGGTGGCAGGTGACATCTTCAACTTGAATACTTGTGTTAGGCATGGAAATGGTTTAAGTAATAAAACCTAATTCAGGTTGAACTGTATTAATCGTCTCATAGGTTTTTAACTTTTCTCTTGAAGGGACGAAGAATGTAAAGACAAGAAAGAAAAAATTCTATGTTGATGCTAATCTAGACCACAATAGTCCAGTTGGAGACATAGAGCTTCCTTTATTTTCTATACCTATCAAAAACCAAAGAAAATGTTTCTTTCTTTTAATCATTGACCCAGGCATTATAGTCCTTCTATCACTTAAGAGCCTAACTATATGTACGGGCGACAGAAGATGATACAAGTAGTATGACAACAAGAGGAATGAATGTATTTGAGAAGTAAATATCTACTTTCTCTTTGGAAGACTTTCTCCATTAAGTGAGCACTGAAAAGGGAGCCTTCCCTGCTATGTATATGAATTGGCGCTTTACATTATTATTGGATAGATAGCAATTTGTTTCTACATGTGATTTTATCTTTTTGGACCTTTTTATGTTAAGGAGTAAACCTTTTGCCTAGACAGTCCTGCTTTTTATTTACTTCTATAGCTTTGTTGGACCTCTGCGGTAAAAGAGAAATTCTATATTGTACCTCTTATTATTTGTCGAGGTTCCTCAGCGAGGTTTTAGCTTTTGAATTATGAAGAGGATTAAAAGAAAAAAAAAGAATACTAATTGAGTAAGTAGTGAGAACATATATGATGATTGAGAATATTTTAACTAAATTATGTTTAAAATTCTTAGTATTCTTAATTATGACACAATCATGAAGAATGCTTCCTACTATTAACCTAAATCTTACAAAGAATAGCGACATAACTCTCTCAACTTTCAGCTCAAGGTGGTGAAATAACTTGAGTCTTCTAACTAACAAAAGAAATACTAAAACAAAATCACAGAAATAGTAATCAATCACCCAAACAGTGTTGGCGAAGTAGTATATGAACAAGTAAACAATCACTGGAAAGAAAGGGCTTTGAGATCTTTCCTCGGGAATATGCTGGTAATTATATTGTGAAAGGAATTGCTTATAACACACACAAAAAAAGAAATTTATACTCAATTAGCTGCTAGACTCCCTACATGCCTAGGATGTGATATAGTTTTTTTTTTAACTTTGCCAGATTGTACAGAGCTCCCAACACATTCTTAGTGCTGTTTTAAATACAATCTTTGCCATTTTCCAAAGAAAATAAAATCTATACTCGATTAGTGCAAATAGCTGCAGTGACATCAACTTTTAAGACATCATTAGTGTAGCTTGAATTGGCACCAGAAGAGTAATAAAGAAAGTTGTGGGAACAATGTTCGAAGGAGCGATAACCAAATTTCAATATCATGAAGAAAAAGATAGGTGGCAATATTTGGATGGTTAGCAACACATGAAGCATGTTTAACAATAAGATTAGCTTCAGTGGAGACTCCATGAATCAGATGTTTTCTATATGAACAATCCCCTGGATTAGTCATCTATGACTTCATTGCAGCCAACGTGTCAAATATGGGCTTGTTTTTAGACATAGCTGGTGTTTTTTGGGTTGTGCACAGGAACTGAAGCAGTTGTTGAACTGCTGGCAGAGATAGAAAACAGACAGAATAGACACAAAACATAATTATGTGACATTGGTGAGCTTTCAAAAATAGCATGTTAACAGTTAGGGATGTTCTAGATTCCCTGAACCATGGTTAAGTTCTTTTGTATTTTCTTTGGTACTCACTTGGTACGGGTTAGTAAGAGAGCACTTCACTTAATTAATAAAGAAACTATAAAGAAAAAGCCGAGGAGAATAAGTTCTAGAGAATATTTTACTTGAAGGTTGCTAGAAGAATGACTAGAATAGTGTGCTTAGATTTGTCGTGCCAATACATTCATTGCCAAGGCAAATAAAAATGGTCTAAGAGTTGATCTTTGATGCCACTTCATAGGAAGTGCTTTGAGTCTCTTCCCGTTGTCCTAACTCAGGCCTTGGCTCTACCGTATGCACTAGTGTATGCCGTACACCTTTAGCCTTCAGCACTTCCATCAGAACTTTGTCGTATGTTGGGTTGTAAGCCCCTCTTCTTCTCCTTATATTGTTCCAATAATTTCCTAACTAGATGAATGAAACTTTACGGCATGAATCTGAACTGGTTCTCGAAAATAGAAACGCCTGTCCTCACCTTTATCTCCATCACCCTCTCTTAAATTTGTGGCTTTGGAGTTTATACCTCTATAGTTGTTGCAATGTTGAAAGTCTGTTGTACTTGTACAACAGATCATTGCACTCCACCTCTATTTTTTCGGACACTATTGCTGCCTTAAAACACGACATTAAACAATTCAGTCAGCCACTTCATACCTTCCTTGCCTGTGCTCTTTTCAAATTCCATCAGGATCTTGTCCGGCTAATCGCTCTTTCCCTGTGCATCCTTCGAATCACACCCTTAACATTCACAACCTTTATTCACCCACATGCCCAAAATTGTGACGCTTCTCGTAATTCTCCAAGTCTCTTAGCACAATGTCTCGATCTCGCCTTTTTGTTCAAGAGTTTGTGGAAATATAATTGTCACCTCCGTCTAATGAGTGCCTCCACCACTAGTATTTTGTCGTCCTCATTCTTGATGCACTTTACTTGTCCCTCCGGCCCTCATCTATTAGGCATTGTGTAGCCCATACAATTTTCATCCCCACCTTTGATCTTTAGTTTTACATTCAATTGTTTAGAAGTGGTCATTTTTGTCGTTGTAATTACTAAATTACCGCCTTCTTTGTCTTATATCTTCCCTTATGTGTCCGCTATTCCTCTTTATTCTTACTCTCCACCATCTTCACTTCACCACCTTTTTTGCTTCCATTTACCTTGGTCGTCCCCATTCCACAACCAATCCCCTCTATGTCCACTAAAGCTACCCCTCGAGACCTAATCATGTCTTTCAGTGTAAGAAGGTTGCTACTTCTAGATGTCTGATCTTGATATTAATTTAGACCTTTATCCAAACAAAATATAAATTTAATCCAACACCTAATCCTGAGATGTCCCACTTATCCCATCAACTTGATGTTATTTTATCTCACCTCCCAAGTGAGATGAAATAGTCAAAGGGTTATTTTACCAGGACTGCAGTCCCGGCCTCCCGGGATAGCTTAGTCCGTGAACCATACGAGCTCACGTTTAACTAATCCTGCGTGCTGATATGTAAGTTCCACATTCTGTGAGATTTAATTGTGGCTTTCAGTAAAAAGAATTCTACCACATCTAGATGTCTTATCTTTGATTATTTTACGTGAAGGAACTTGACAATTATAGATCAAGCTTTTCTGTTTTGTTATGAAATCCCAATCTTATTCCATGACTTTCATAAAAATTACTGTGATGGCATTTTTTCTCTGCTGACTTCTATTTGTTATCAGTAAGTACGCATTTTGGCCAAACAGGTCCTAAGTTTCTGTAAGAAGATATGTTTGCGTAGGTTTGTAGAAATAGAAGTCTTTAAGTTTGTGTGATAAGAAATTGTATAGAATTCATGTCGGGGTTCTAAAGATAAGGGTAGATCGACAGTACTTTTCCAATACGTTACTTTGTGCACTAAAAAGGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGTTCATGTGGATCTTTGATGTGTCTTTTTGTGGTGTATAGCGTGTCACCCGAGTAACTGTTTATATTCCTTTCAGTATGAAGAAAAAAATGACGATGTGACTCCTGTTATTTGATTGCAGATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACGGTAACTACTGATATTCCTTTTAGGTGTACAGATTTCGTTTTAAAATAAAGCTTGACTTATCTTGCGTCTTATTAAGTTTTGTCTTGAATTTGTCTCTATTAGTAAATCCATCACATGTCTTGGAGCTGCAACTTCATAACATCCATTAGCCCTCTCCATCTAAGCATATCATAATGGTTCCTTTTCATTCTTTCCCTCCCTTCGGTTATTAACGTGTAATGCCCATAAACTCGTTAAATTATGGAGATGATCCTATCATCACATTAGTGCTGAAATTATTAAATCATTCAATACTCCATTTTTATAAGATGGAGAATCCATGTGGTGAGATGATGTGTCCTTCTGGTGCTTCATGATTGATCGTCTCCTGTAGGCAAATTGAATTAAAATTGGTTCATGTAAAATCTACCTACATACATACAGAACCAGTGGATGGCCTTTGAACTAGACTGTTGGACTGAAAGAGCAGAGTTTGTCTTTTGTTTAAAGGAACTGACCTTGGCTAAACATGGAAATTACCAATCTCTTGTGGAAGTGCTGAGGGGTAGTGAACAAAATAACGCTTCTGGCTGTATAAATTGGAAGTATACCTTTGTTGCCATTTATATAGTCTGAAATAGGGAGGACATAAATAAACAGTAAAGAGCCTTCTCATGTTAATGTCTCCTTTTTAATTGCAGCAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTA</genome_strand>
        <mrna_strand>GGTTTCTTCACCGGCAAAACTTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGATCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCTTTACACAACTTGGGGTTTACATCCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322288" ref_strand="+" ref_description="SGN-E322288 [cTOB-24-G21]">
      <seq>gtttcttcaccggcaaaacttctccgtatatcactcagccgcagagttaaagaccttgcaaggacctgaagacataatacttttcctttgtggctgaccagatttgagtgagactcacttgttcatatttcttttcgcggagagataaatttattgcttactttcacgtacaatggggcacagaaattcattcaacacgcctccaatatttgggacggaagatgatcagagatggaacattccagagcaggcacctttgccttacgcaaggactggtgttccggaaagcagtaatattgtttatccagtggatagtatgtcaattgacggggcacaccattcttctcaggggcatggctctaggccaagtggatattcttccttgaatccaaatatggaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="5724" stop="18548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6024" g_stop="6049" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7998" g_stop="8097" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="126" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8098" i_stop="17290" i_length="9193">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17291" g_stop="17430" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="266" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17431" i_stop="18110" i_length="680">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18111" g_stop="18248" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="404" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E322288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6024" e_stop="6049"/>
          <exon e_start="7998" e_stop="8097"/>
          <exon e_start="17291" e_stop="17430"/>
          <exon e_start="18111" e_stop="18248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCACCGGCAAAACTTCTCCGGTAATTCACCGATCATCGGTTTAGTCTATATTATTGTTTCTATTAAGTCCATTCATGTCCTTTGTTTGTTTGTTTGTTTAATTCTGTATTTTTTTCGGTGTTGTTCGGTTGATCGATTGTAAAAATTATTGGGTTGGAGTTGTTTTTCGTACCCGATCGTGGTTAGTTTATCAAATTTATGTTCTTCTGCGGTTGTTTTGTTCCCTTTCTGTGATTTTTTGTTGGGTTTTAGGCTTTAATTTGTTGCGATTTTTTTAATTAATAAGAACCCATTAATTCCGAGCTGATCTTCTCACCCGATCGTTTAGTTTTGTTGTATGCTGCTTTTTACAGATTTTGCATGAACAATTGTTTTATGTTTACTTATTATCTAAGATTTTTTGTTTGTTTGAACTTTCAGTTTTTTAATTTTGATTGCAAGTTATTAAGTGTATGTTTTTTTTTTGTTTTAATTATAAATAGATACTGGGGACTTGATATAATCTGAAGAAAGTAGAATCTATGGACTATTTACTCATGGATTAAGAAAAGACATCATTTTTGAGCATTGGAATGGAAGGGGTCAATGAATATTGATGATTCATGTGACCGACTCCGTCTCCAGTTTGGAAGTGAACCGTAGTTGTAGTTCTTTATCGCACACTATCCTCCCCAGATCCTACAAGTGGGATCATACTGGGTATGTTGTTGTTGTTGTTGTAAAGAAAATTGAATATTTGATGCACCAATTTGGTAAGCGGCTACATTAACTAGAGATCGTAAATATGGAAATCTTGCTGTCCAGAAAGCTATATGCTGCGTATAGGAGTTTCTGAAAGCATTAATTATGTATCAAAAAGGGAAGGAGGGAGAGAAGGAGGATAAAAGAGAGAAATTGGTTGGTCTATTACACTCCTGTGAAGTATTCATGGCTTAGTTTTGTTTGATATGATTGGAAGACAAGTAAAAGTGATATAGTTTTCTCTTTTATGGAAAGTTTGAAGTTGTACTTCCCTTCTTCACTTTCTTCCTTGCTAAATCACTGAGAAATCCTTATTCCTCTGTTTTTACCTCCATTCCACAAACATCTCTGTTTCACCCAAGTAAATGCAGCGAGTAATTTGACTTGAACCTTTTCATTATTCTTGTAATTCATCTACATATGTGTGTGTGCAGCTTCCTTTTCTTATTATTGTTAATTGTTTTAGTTCTATTTCCTCGCAAGGATGGAATTTCTAATTTGGTCTAAGAGGAACATTGACATTTAGCCACTCATAGTGGCAGTCAATATTATTTAGTAATACCTCTGAGTTCTTTATACCGTGTGGGACTATGCGGTGTATGTTGTTGTTCTTGTTTGAGTTGTTTATATCGAGTAAGGTTAGGATAATTTTTTCCCCAAGTTTGAGTCTGTGGGGCTTTTAAATGACCAGCATGAAAATCCTTTTCTCAAAAATAGGTGGCCAGTGTATTATTACTGTTAGGGAGTTAAATTCACCTATAGGATCTAGGGACCAAAGAAAGATGAGATGTGATGGATCCATGGATAGACAGGTGACAGGTCTCAGTGTGAATCTTATCCAATGAACTAGGATTGAGTCTCATAGTGATGCAATTTATTTGGATAAGAAATTACACCTTGTCCATGAATTTTAAGTCAAATAGAAATGGAGCTGAGAATCAGTTTTATGACATTCTACCATGAGCTATGCTGTTGATTGCACATTCCATTGTTCTGAAATTGATTCATGGATGTATTTTGAGTTCCTTTAGATATGCATTTTTATAGTTGGTATTGTGTTTTGCAAGGACATGAGACAATCATAACTTGTGTTTGCGGGGCCTTAATTGCATATAGTATTACAGTGGTCCCTAAAAGTCAAGATTTTGTTTATGCCATTGATGTGTAATATTGATTCAAAATTTGTCCAACACAAGTGAACCATGTTATATGTTTTATTTGCAACAGTATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCATGTAAGCATTTTCTTTTTTTTTGCCTAAATTTTCAAATTGTTAGCTTTGAGATCTATTGTCCAAAGAATTTAGGTGGAGCATCTGCCTGCACCGTGTTGCTTTTAGATGTTGGGAGATGCCTCTCCTTGGATCACAGGAGGATGTGATGCCACATTTTATGATTTGTCAATGTTATTCTTCAAAAATTTGTCTCTTACATATTATTACTTATAACCAGCTGCTCTGTTTACATATTTGAACACTTCCAAGTAAGGAAATAACATTTCATCAGTCCCTTTATTCTACTCAGTGATACATTTTAGACCTGGGCAGTGTGTATTTGCTTATAATTTTTTTTTATTTTTTTTGGGCTCCATGTAAAGTTACTTCCCTTGGACTATTTTAAGAACATGAAAAACATTTAGCTTTATTTCATTAACTTCTTTATTTGAACAAAGTATATTGTTTGCTCTCTTTTATAAATGATCTTTTTTCTTGTATATGACCCTTTTCAGCATTTTGTCTAATTTCTTGACACCGTGATATGAACTTGAAGAAATATGAGGAACTAACTTAAATGACACTATGGAAACATTTATCCGAAGCCATGTGACTGTGGCTTTATATTAGCAAATATATATCTCCCATCTTTCTGCTAAGTGCCCACTTTGTAATCTCTATTTTTTGCTTAGGCACTGAGTTCCTAGAATCTATGTGCTAGCATTTTCCTATATTTCCTTTCAGAGTATCTAGGTTTAGATGGTTTTTCGTATGCAGGCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACACGACATAAGTTGATGTGAGGGCTTGGGATGAGGACATATTGCAAGTACAGGTGAGGGGTTTTGGTACCTACCTTTCTCAGTCCAGCCATATCTCTATCTATAGTACTTATTTTAAGGTTTCCTCATCTTACATTGTTCTTTTTTTTTTCCAGCTTTTGCTCTAGCATCTTCTTGTTCTTCCTTTCTTTTTTCAATCCCAATCCGGATTTCTTATCACCGTCTCAGATAATTAGGATAGGTCATAATTATATTTCTGATTCTTCTCATCTTTCTCACTGAAAAATAATCTGGGAGCTCCTGCAGGGTATTTATTTGGTGGATAGCTAAATAGCTTTGCTAATGTATAGAACCTCACGCATACATGATGTTGCAAACAACTTTCTGGTCAATCTGGCAGGTTATGAAGAGATATCATTCTTATGGTGTTCTTATCAAGATTGATTAGACTGAGCTGCTCTTATTGCATCTCTTACCCTTAAACCTTTTGAGTGTGAAGAGCTCATAGGAAATAGGTTCTGCTATTCTTGCAGAATTAATGACCTACCGAAAGATGCTTCTTGATGAGGTGAGAAGTAGTTGAAAACCTGAAGTCATTTAGACGCTGCCACTTATTGGGGGGTGAGAGTTTGTTGAAAAACTGAAGTTCATTTTACAGGCTGCCATTAACTGTGGGGAGAGCATTTCTGGAAAACCTGAAGTTCATTCTACAGGCTGCAGCTAACTTTCTGATTAGTTGTGGGATTCCTTTTAACTGCTGGTAGTATGGGGCCACTTTCACTTGGAAAGACTGTCTTGCTTATGCCATTTTTATTGATGATAGGAGATGAAGTTCTTGCTGACCATGCTGCTTCCAGAGCACATTTTTGACTGGTATTTGTTTACTTTTTCTGGAATGGTGGATCTGTTGGTAGTGACACGGGGGCAGATGTGTACGATCTTGTCTGTGAATACTTTGGATTGTTTGCTGGTGAATAGAACTGAATGGTGCACAGTTTGAGTGTGTTGCAACTTTATTACAATATCCCTTCTAAGGTTCAGGGTAGAGATGCTGAGCAGATACTGTAATGCTCAATAGATGCAACATTCACAGTTTTGAGTGTGTTGCAACTTTATTACAATATCCCTTCTAAGGTTCAGGGTAGAGATGCTGAGCAGATACTGTAATGCTTAATAGATGCAACATTCTCTCTATTTTCTCAATGACAGCTGGTTTTATCCTGATTCAATTGTATGCTGGTAATTCCTTTAATTGAGCCTATTGAGCTAGTGTTCCTGTGCTCCTTTGGAGTCTTAGGTTGTAATCTTACTCTATTGATGGCTTAGTTCGAAATAGAGTGAGAGCAATCCTGATCAATTTATTCTCTGAATGGCATCACAAGGCAGAGCTGGGGTCCAATGGAAGGTACATTTTCGTAGTTGTACCACTACGATGTAGCACATTGATGCTAGTATATTGCTAAGTGTGCTGCAACTCCGTAGAACACTTAAACATAATGTTGCTTGGTCTACGGAATATTGGAGGACAACTATCATAGTTGGTTGTGATGAATGAGAAAACACGCGTATTACCAGTTAGCCTCTGTATTTATGGTTGAGCTCCCATTGATGTAAGAAAGTTCTCTAACTAGTAACACATCTATAGCTTGGATGAGTTGTATCTAGTTCTTTGGGGCTCATTGGTACCTGTCACTATTCATCCTTTTGTACTACCCACAATCTTCATGAGGTGGTGCCTCTTATATTTCACTTTGCAAGTAGATGCAATGATGGAAGCTTTTAAAGCCATTTCACAGTTTTTGCTTCTATCCCTATTTTGCACTCTCAACATTTTGTACTAAACTTAGTCAATCATGAAGCATATCTGGTACTGTTAACAAATTTATTTCTTTACTTTCTCCCTCTGACAAGATTATTCTTAGCTAATCTCATACCATCATTATCCATTTACTTTTCTATCTCTCTGACAAGCCAACTTGTTTTGGTGCATTTCATACAAAAGATTGCAATTGCTTCTTTCTAAACTCTCATATGCTCTTTTACACTGGTACATCTCATAAAAGCAACATTAATAAGTGTTTCCAGAGACACTCTCGTACTCCTCCCCCACCCTTTGCTCTTCGTCCTGCATTTCTCTGAGTTCTGAACCTTGAAACAGTCATTATCAGAAAGATTGACGGACACAAAAATTGTAGTGGCTTCTCCTTAATGGAACATATTTCAGTGAGACTGCCATGGGATGAGGGAAACCAAATTGGCCATGTCTATTTGGTGGTATGGCTCGTCAAAGGTACTTGTGGTGATATGTTTCTCTTTTTAGCTTTATTAATGAGCTATCTTTAATATTTCGTGTCATTTTGTTGAAACAGCAGGAGTAGTCAAGTGGTTTAGCTTGTGTTCTTGTTTCCTATTAAATTTTGAGTAGATTCAACAGGAAAGGTCCTAGATATCCGTCTCCAGGATAAGTACAACATATACGTTACATTTTCTAATCCTTACTAAGTCAACATTGAGAAAGAAACTATCGTGACTGCATCAATTTTGGTTAAATTATATGCAATGGATGTATCATTACTATCATTAGCTTGCTTAGTGACATTTGCTCTTTAGGCTCATATATTCAGACAACTTGTCAGCTGTCCATGTGTTGGCTTTATTTTCTGGTTGCTCTGGGTTAATCTTGAACATGAAAGCGGCATAAAGTTTTAATGAGCTTAGAAATGATTCACATCTCTTTACCACAAAGGTCTTCTTACTTTAATCTTGCTTTTGAAATGGATAACACTGTATAATTCAATGATGTTGTTGTCTTTATAATAATACTTCCGCCATTGACCATAACGTACCTTTTTCATGTGAAAGATGCCACTTTTTGTGTAGTCCCAGTTAAATGCTCTTACTTGCCCCCCCCCCCCCCCCTCCCCCCCCTCAAGCAGGAGTATGGTAAGACTTCTTGGAGAATAATTTGGGAATGTCACCAGCCAGACCATCTTATCACCCTAATCATGAAAAGCTTGTATAGTTTCTAGGAAATCTTTCCGCATGTCAATTTTTAGAATTGTATACTTGTCTAAACGTATGTCTGGTGCAATCTGCCCAACCTTTGTATTAAGAATCTCCACAACTATGGCTTTCTTTGCAGTTGTGATTGAAAAGTGATCAGAAAACTCAGCTGGTTAGAATAATACCACCTCACCAACTATCGAGCCAACATCGTGTACTGTTCGGTTCCTAAAAGAGATTCCTTTAAACTTCAGGAAGTCCTCTCTTTTTCATTTTTCTCCAAAAAAAAGAAGTCCTCTCTTTTTCATTTTTCTCAAAAAAAAAAAAAGAAGTCCTCTCTTTTTCATGATCTTTTCCATTAGCTTGTTTTATAAGGGTGGTTCTCCTCTTTGAATCATCCAAGATGTATGCGTTTATACATTTCATTTATCAGTTCCCTCCTTATAGCACTTTCATCTATTTCTATCTCCCATAACCATCCCAAAAGGGCTCAGTTGAACATAGTTATTTACAGATGCTAATGCTTCCATTCTTACCGAGGCTCATCTGTTCGTATAGGAGCTCTGTCTCTATCCAGCTTTCGCCAACTCACCTGATGAAAATTTCCTATCTCATTAGGTTTTCAGTATTTTAAGGCACCAGTTCTACAATATGAAAATGTACATAAGAGCTTTTTCTGTCAAATACTTCTCCCTCCTTTTGACATTACTCTTCTTTTTCTATCCTTTCAATACTTTCTTGAGCTATAGTAGCCAAAGCTCTCCCTCCTTGAATTTGCCTCATAGGGAAGATCCAGGCTGTTCATAAGGAGTTCATGTGCAATCACCCCTTGGTAGTAGTTAGAACAATGGTTATTATGCACCTCCCAATGGTTTGAACTCCGATTTTGTTGTACCTGTTCTGAGCCAATACTCTGCCACCAACTATGTCAAGGTGTTGAACGGTGAACAGATTTGTCTCGTTTGAGGATCTTAGAAAATTAGTATCATCTGCTTATATTAGATCTGATTTTCAGTCTTATGGTCTACTGATAACTTTTATCAGAAAACCATTCAGACATGCTCCATTTATTGGTTTTCCGGCAGCTTATTGATCATCTCAATGGCAAAGCAGAAAAGTGATGGGGATAAATGATCTCTGTGTGAACATCCTTTGCTATTCCTGACTAAGTTCAAAGTTGCTAAGTTAAGATTACCGTTTAAGTAGAATCTATGCTTTAATTTAAAGAAAGATATAATGTAACTGGAACATAGAAAAGAAATGGTTAGGCAGCTCATGTTTGTTGCTTAAGTGCAATTGTGAAGGTGATTCAGTTTGTAAGTATTGTTTTTTGTGAAAAATAACTTCTTTTTTTGAAAATGGTAATGTTGTATTCTTCAGCATTAAGGATATGCTAGTGACCTGCAAACAGAGGGGAACAAAAGAAGAGGAAGGAAAAAAAAATACCTACAAGGATCCTAATAATAACTTATTTCTGGAGTACTCCGAAAAGGAGGTGGCAGGTGACATCTTCAACTTGAATACTTGTGTTAGGCATGGAAATGGTTTAAGTAATAAAACCTAATTCAGGTTGAACTGTATTAATCGTCTCATAGGTTTTTAACTTTTCTCTTGAAGGGACGAAGAATGTAAAGACAAGAAAGAAAAAATTCTATGTTGATGCTAATCTAGACCACAATAGTCCAGTTGGAGACATAGAGCTTCCTTTATTTTCTATACCTATCAAAAACCAAAGAAAATGTTTCTTTCTTTTAATCATTGACCCAGGCATTATAGTCCTTCTATCACTTAAGAGCCTAACTATATGTACGGGCGACAGAAGATGATACAAGTAGTATGACAACAAGAGGAATGAATGTATTTGAGAAGTAAATATCTACTTTCTCTTTGGAAGACTTTCTCCATTAAGTGAGCACTGAAAAGGGAGCCTTCCCTGCTATGTATATGAATTGGCGCTTTACATTATTATTGGATAGATAGCAATTTGTTTCTACATGTGATTTTATCTTTTTGGACCTTTTTATGTTAAGGAGTAAACCTTTTGCCTAGACAGTCCTGCTTTTTATTTACTTCTATAGCTTTGTTGGACCTCTGCGGTAAAAGAGAAATTCTATATTGTACCTCTTATTATTTGTCGAGGTTCCTCAGCGAGGTTTTAGCTTTTGAATTATGAAGAGGATTAAAAGAAAAAAAAAGAATACTAATTGAGTAAGTAGTGAGAACATATATGATGATTGAGAATATTTTAACTAAATTATGTTTAAAATTCTTAGTATTCTTAATTATGACACAATCATGAAGAATGCTTCCTACTATTAACCTAAATCTTACAAAGAATAGCGACATAACTCTCTCAACTTTCAGCTCAAGGTGGTGAAATAACTTGAGTCTTCTAACTAACAAAAGAAATACTAAAACAAAATCACAGAAATAGTAATCAATCACCCAAACAGTGTTGGCGAAGTAGTATATGAACAAGTAAACAATCACTGGAAAGAAAGGGCTTTGAGATCTTTCCTCGGGAATATGCTGGTAATTATATTGTGAAAGGAATTGCTTATAACACACACAAAAAAAGAAATTTATACTCAATTAGCTGCTAGACTCCCTACATGCCTAGGATGTGATATAGTTTTTTTTTTAACTTTGCCAGATTGTACAGAGCTCCCAACACATTCTTAGTGCTGTTTTAAATACAATCTTTGCCATTTTCCAAAGAAAATAAAATCTATACTCGATTAGTGCAAATAGCTGCAGTGACATCAACTTTTAAGACATCATTAGTGTAGCTTGAATTGGCACCAGAAGAGTAATAAAGAAAGTTGTGGGAACAATGTTCGAAGGAGCGATAACCAAATTTCAATATCATGAAGAAAAAGATAGGTGGCAATATTTGGATGGTTAGCAACACATGAAGCATGTTTAACAATAAGATTAGCTTCAGTGGAGACTCCATGAATCAGATGTTTTCTATATGAACAATCCCCTGGATTAGTCATCTATGACTTCATTGCAGCCAACGTGTCAAATATGGGCTTGTTTTTAGACATAGCTGGTGTTTTTTGGGTTGTGCACAGGAACTGAAGCAGTTGTTGAACTGCTGGCAGAGATAGAAAACAGACAGAATAGACACAAAACATAATTATGTGACATTGGTGAGCTTTCAAAAATAGCATGTTAACAGTTAGGGATGTTCTAGATTCCCTGAACCATGGTTAAGTTCTTTTGTATTTTCTTTGGTACTCACTTGGTACGGGTTAGTAAGAGAGCACTTCACTTAATTAATAAAGAAACTATAAAGAAAAAGCCGAGGAGAATAAGTTCTAGAGAATATTTTACTTGAAGGTTGCTAGAAGAATGACTAGAATAGTGTGCTTAGATTTGTCGTGCCAATACATTCATTGCCAAGGCAAATAAAAATGGTCTAAGAGTTGATCTTTGATGCCACTTCATAGGAAGTGCTTTGAGTCTCTTCCCGTTGTCCTAACTCAGGCCTTGGCTCTACCGTATGCACTAGTGTATGCCGTACACCTTTAGCCTTCAGCACTTCCATCAGAACTTTGTCGTATGTTGGGTTGTAAGCCCCTCTTCTTCTCCTTATATTGTTCCAATAATTTCCTAACTAGATGAATGAAACTTTACGGCATGAATCTGAACTGGTTCTCGAAAATAGAAACGCCTGTCCTCACCTTTATCTCCATCACCCTCTCTTAAATTTGTGGCTTTGGAGTTTATACCTCTATAGTTGTTGCAATGTTGAAAGTCTGTTGTACTTGTACAACAGATCATTGCACTCCACCTCTATTTTTTCGGACACTATTGCTGCCTTAAAACACGACATTAAACAATTCAGTCAGCCACTTCATACCTTCCTTGCCTGTGCTCTTTTCAAATTCCATCAGGATCTTGTCCGGCTAATCGCTCTTTCCCTGTGCATCCTTCGAATCACACCCTTAACATTCACAACCTTTATTCACCCACATGCCCAAAATTGTGACGCTTCTCGTAATTCTCCAAGTCTCTTAGCACAATGTCTCGATCTCGCCTTTTTGTTCAAGAGTTTGTGGAAATATAATTGTCACCTCCGTCTAATGAGTGCCTCCACCACTAGTATTTTGTCGTCCTCATTCTTGATGCACTTTACTTGTCCCTCCGGCCCTCATCTATTAGGCATTGTGTAGCCCATACAATTTTCATCCCCACCTTTGATCTTTAGTTTTACATTCAATTGTTTAGAAGTGGTCATTTTTGTCGTTGTAATTACTAAATTACCGCCTTCTTTGTCTTATATCTTCCCTTATGTGTCCGCTATTCCTCTTTATTCTTACTCTCCACCATCTTCACTTCACCACCTTTTTTGCTTCCATTTACCTTGGTCGTCCCCATTCCACAACCAATCCCCTCTATGTCCACTAAAGCTACCCCTCGAGACCTAATCATGTCTTTCAGTGTAAGAAGGTTGCTACTTCTAGATGTCTGATCTTGATATTAATTTAGACCTTTATCCAAACAAAATATAAATTTAATCCAACACCTAATCCTGAGATGTCCCACTTATCCCATCAACTTGATGTTATTTTATCTCACCTCCCAAGTGAGATGAAATAGTCAAAGGGTTATTTTACCAGGACTGCAGTCCCGGCCTCCCGGGATAGCTTAGTCCGTGAACCATACGAGCTCACGTTTAACTAATCCTGCGTGCTGATATGTAAGTTCCACATTCTGTGAGATTTAATTGTGGCTTTCAGTAAAAAGAATTCTACCACATCTAGATGTCTTATCTTTGATTATTTTACGTGAAGGAACTTGACAATTATAGATCAAGCTTTTCTGTTTTGTTATGAAATCCCAATCTTATTCCATGACTTTCATAAAAATTACTGTGATGGCATTTTTTCTCTGCTGACTTCTATTTGTTATCAGTAAGTACGCATTTTGGCCAAACAGGTCCTAAGTTTCTGTAAGAAGATATGTTTGCGTAGGTTTGTAGAAATAGAAGTCTTTAAGTTTGTGTGATAAGAAATTGTATAGAATTCATGTCGGGGTTCTAAAGATAAGGGTAGATCGACAGTACTTTTCCAATACGTTACTTTGTGCACTAAAAAGGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGTTCATGTGGATCTTTGATGTGTCTTTTTGTGGTGTATAGCGTGTCACCCGAGTAACTGTTTATATTCCTTTCAGTATGAAGAAAAAAATGACGATGTGACTCCTGTTATTTGATTGCAGATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACGGTAACTACTGATATTCCTTTTAGGTGTACAGATTTCGTTTTAAAATAAAGCTTGACTTATCTTGCGTCTTATTAAGTTTTGTCTTGAATTTGTCTCTATTAGTAAATCCATCACATGTCTTGGAGCTGCAACTTCATAACATCCATTAGCCCTCTCCATCTAAGCATATCATAATGGTTCCTTTTCATTCTTTCCCTCCCTTCGGTTATTAACGTGTAATGCCCATAAACTCGTTAAATTATGGAGATGATCCTATCATCACATTAGTGCTGAAATTATTAAATCATTCAATACTCCATTTTTATAAGATGGAGAATCCATGTGGTGAGATGATGTGTCCTTCTGGTGCTTCATGATTGATCGTCTCCTGTAGGCAAATTGAATTAAAATTGGTTCATGTAAAATCTACCTACATACATACAGAACCAGTGGATGGCCTTTGAACTAGACTGTTGGACTGAAAGAGCAGAGTTTGTCTTTTGTTTAAAGGAACTGACCTTGGCTAAACATGGAAATTACCAATCTCTTGTGGAAGTGCTGAGGGGTAGTGAACAAAATAACGCTTCTGGCTGTATAAATTGGAAGTATACCTTTGTTGCCATTTATATAGTCTGAAATAGGGAGGACATAAATAAACAGTAAAGAGCCTTCTCATGTTAATGTCTCCTTTTTAATTGCAGCAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTC</genome_strand>
        <mrna_strand>GTTTCTTCACCGGCAAAACTTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246486" ref_strand="+" ref_description="SGN-E246486 [cLEF-52-P9]">
      <seq>caactggatattcttccttgaatccaaatatggaaattccacactgtcagccacaggttcaaggtcctcttcatgacccttttctacattcaggtactggaggctttcatatgatccatgagaattatccacatcaagcatcttcatcagcccatggtggccagacatatcatggggtggatggtggccttgttgacctcacaatgggtagtgggagagggccgtacaaacgaaagagtcctggtatacctgcaggtggcgaaagtggtagtacaagcagatactttgatgctggcagttcatctgatctcccttctgaatcttggcaggagaaacaaaatccagacccccattacacaacttggggtttacatcctaattaccgaggtaatagtctgtctattggaggtgagggttctcagaggaatgtaagaagcagagctgcatttgacctgcaaaataatgtaggaagggctcatataacaagtactccttcacatcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="17910" stop="19014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18210" g_stop="18714" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E246486" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18210" e_stop="18714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTC</genome_strand>
        <mrna_strand>CAACTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345677" ref_strand="+" ref_description="SGN-E345677 [cTOF-18-F3]">
      <seq>acactgtcagccacaaggttcaaggtcctcttcatgacccttttctacattcaggtactggaggctttcatatgatccatgagaattatccacatcaagcatcttcatcagcccatggtggccagacatatcatggggtggatggtggccttgttgacctcacaatgggtagtgggagaagggccgtacaaacgaaagagtcctggtatacctgcaggtggcgaaagtggtagtacaagcagatactttgatgctggcagttcatctgatctcccttctgaatcttggcaggagaaacaaaatccagacccccattacacaacttggggtttacatcctaattaccgaggtaatagtctgtctattggaggtgagggttctcagaggaatgtaagaagcagagctgcatttgacctgcaaaataatgtaggaagggctcatataacaagtactccttcacatcactctaacagcagtagaacatccactgattattgtaattcagtgaattatctagctccaagttcgaattcttcagcaagggaatggaaccatactgtcatgccccctgcagctgcccatgggaggaanctcgctcctgatgcaagcttcttttgttatgatatgaaccactatgatatggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="17950" stop="19265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18250" g_stop="18848" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18921" g_stop="18965" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="646" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E345677" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18250" e_stop="18848"/>
          <exon e_start="18921" e_stop="18965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGTCAGCCAC-AGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAG-AGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTGGTTAGTTTCTTAAATTGTTTTGTCATCCTTTGCTGTGTTTTGATTTTAATAGTAATATTTTGTTAACTGCAGATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTA</genome_strand>
        <mrna_strand>ACACTGTCAGCCACAAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAANCTCGCTCCTG........................................................................ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374417" ref_strand="+" ref_description="SGN-E374417 [TUS-33-P20]">
      <seq>acactgtcagccacaggttcaaggtcctcttcatgacccttttctacattcaggtactggaggctttcatatgatccatgagaattatccacatcaagcatcttcatcagcccatggtggccagacatatcatggggtggatggtggccttgttgacctcacaatgggtagtgggagagggccgtacaaacgaaagagtcctggtatacctgcaggtggcgaaagtggtagtacaagcagatactttgatgctggcagttcatctgatctcccttctgaatcttggcaggagaaacaaaatccagacccccattacacaacttggggtttacatcctaattaccgaggtaatagtctgtctattggaggtgagggttctcagaggaatgtaagaagcagagctgcatttgacctgcaaaataatgtaggaagggctcatataacaagtactccttcacatcactctaacagcagtagaacatccactgattattgtaattcagtgaattatctagctccaagttcgaattcttcagcaagggaatggaaccatactgtcatgccccctgcagctgcccatgggaggaacttcgctcctgatgcaagcttcttttgttatgatatgaaccactatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="17950" stop="19260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18250" g_stop="18848" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18921" g_stop="18960" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="639" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E374417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18250" e_stop="18848"/>
          <exon e_start="18921" e_stop="18960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTGGTTAGTTTCTTAAATTGTTTTGTCATCCTTTGCTGTGTTTTGATTTTAATAGTAATATTTTGTTAACTGCAGATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATAT</genome_strand>
        <mrna_strand>ACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG........................................................................ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270602" ref_strand="+" ref_description="SGN-E270602 [cLEN-1-M17]">
      <seq>acaaacgaaagagtcctggtatacctgcaggtggcgaaagtggtagtacaagcagatactttgatgctggcagttcatctgatctcccttctgaatcttggcaggagaaacaaaatccagacccccattacacagcttggggtttacatcctaattaccgaggtaatagtctgtctattggaggtgagggttctcataggaatgtaagaagcagagctgcatttgacctgcaaaataatgtaggaagggctcatataacaagtactccttcacatcactctaacagcagtagaacatccactgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="18135" stop="19042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18435" g_stop="18742" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E270602" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18435" e_stop="18742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTAT</genome_strand>
        <mrna_strand>ACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAGCTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCATAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257484" ref_strand="+" ref_description="SGN-E257484 [cLEG-45-J18]">
      <seq>ctaacagcagtagaacatccactgattattgtaattcagtgaattatctagctccaagttcgaattcttcagcaagggaatggaaccatactgtcatgccccctgcagctgcccatgggaggaacttcgctcctgatgcaagcttcttttgttatgatatgaaccactatgatatggttaccggcaatatctctacctctctggagatggggaattaccacaatgatttcacctccaacagaacttcccttcctcagcatttacctggcagcttgccatcttcaaggggagtcagaagtagctatagtcaaagatcttcccctacttttaggacttcttcaagctatttgcgtcatgggcatgttgggacttcagatgacggatcacagttgtttgctgaaggttactcctcaagacattcacgaccattgtctactctaggactgcgtagtagtgaccgaaatgggagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="18414" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18714" g_stop="18848" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18921" g_stop="19258" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="473" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E257484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18714" e_stop="18848"/>
          <exon e_start="18921" e_stop="19258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTGGTTAGTTTCTTAAATTGTTTTGTCATCCTTTGCTGTGTTTTGATTTTAATAGTAATATTTTGTTAACTGCAGATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACT</genome_strand>
        <mrna_strand>CTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG........................................................................ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307365" ref_strand="+" ref_description="SGN-E307365 [cLEY-12-C7]">
      <seq>gtattgtaattcagtgaattatctagctccaagttcgaattcttcagcaagggaatggaaccatacctgtcatgcccccctgcagctgcccatgggaggaacttcgctcctgatgccagcttcttttgttatgatatgaaccactatgatatggttaccggcaatatctctacctctctggagatggggaattaccacaatgatttcacctccaacagaacttcccttcctcagcatttacctggcagcttgccatcttcaaggggagtcagaagtagctatagtcaaagatcttcccctacttttaggacttcttcaagctatttgcgtcatgggcatgttgggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="18440" stop="19456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18739" g_stop="18848" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18921" g_stop="19156" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="348" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E307365" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18739" e_stop="18848"/>
          <exon e_start="18921" e_stop="19156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATA-CTGTCATG-CCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTGGTTAGTTTCTTAAATTGTTTTGTCATCCTTTGCTGTGTTTTGATTTTAATAGTAATATTTTGTTAACTGCAGATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACT</genome_strand>
        <mrna_strand>GTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACCTGTCATGCCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG........................................................................ATGCCAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730731" ref_strand="+" ref_description="SGN-E730731 [LA25AA11]">
      <seq>cgcttttacctggcagcttgccatcttcaaggggagtcagaagtagctatagtcaaagatcttcccctacttttaggacttcttcaagctatttgcgtcatgggcatgttgggacttcagatgacggatcacagttgtttgctgaaggttactcctcaagacattcacgaccattgtctactctaggactgcgtagtagtgaccgaaatgggagaactagggtatccagtgataggtacagatcgttggctggtgaggcaggtttccgtgagcaagttgcatctgagggcgtgattattccagaccgctctacttattatgggtccagaagcatgtttgaccagcatagggacatgagacttgacattgacgacatgggctatgaggtaagttctgaaactctactttgttttgcttcctgttttcatcttgcagccatctgctcagctttgatactttgacatgaacaggagcttctggctctgggagaaagaattggccatgtcaatactggcttgtcggaggaactgatttcaaagtgcatgaccgagtcaatttattgttcctcaggccaaaatcatgaggaaggaaattgtgttatctgtctggaagagtatgttaacatggatgatgtcgggacgttgaaatcgtgcatccatgattttcatgttggatgcataagaagatggctgtcaatgaagaacgtgtgtccaatctgcaagaaaactgcgttggatgacgacgatctgaaggaaaaatgatttatttagctatgacttactgggcattgaacttgtgtaaatatgtatttagaacatttctcaaatggggggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="18742" stop="21236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19041" g_stop="19327" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19328" i_stop="20028" i_length="701">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20029" g_stop="20349" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="608" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20707" g_stop="20936" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="838" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E730731" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19041" e_stop="19327"/>
          <exon e_start="20029" e_stop="20349"/>
          <exon e_start="20707" e_stop="20936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAGGTGTGTATGCTCATCTTATACAAGATATTGGCATGTCGTCCTTTTGTGAGGGGCTTAGCTTCTGTCTAGGCTCCCTATATCAAATACACAAGTCTTTTGCATCATGGGTGTGACTAGTTCTCTTGCATTGTGCCACATGAATGTCCAGTCTTTTGTTCTTCTTTTCCTCTTACGAAAATATGACCTTTCTGCTTCATGCCAGAAGAATGTCCCAGTCTTATTTTGCTTTACATGTGTGTATATGTATTGGTGTAAATCCTTTTCAATGTAAATCATAGATGCTACCCAGGTGTATTTTGTGCATTTGTTTGATCAGCTAATGTAAGGGAAAATGCGCTTCACTTTGAAATATCAACTGGGAATATGCATGCTGGTATATTTTTGATATGTAGGTCTGTGTCATCAATTTAAGCTGTTTATGTTTACTGTTTGACTTGTGATCCTTCTTACATACAATCAGTCTTGATGAAATTCATTCAAGGATCCTTAATTTTTTTCATCAATTTTTATTACTCATAATTTAGTGGATTTATTTTGCTTTCTTGTATGGACACTTGTGTATTCCAATCTGGCATAGTGGGGAATACAAATAGCGGTAGATGGTAACTTGGCTTAAATATGATATTTTCGTTCATCATTTCTACCATCTCTGAACCATAACTCCTTTGAGACATGTTGAATGTGAAACTTTGGGCTTTCAGGGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAGGTAAGTTCTGAAACTCTACTTTGTTTTGCTTTCTGTTTTCATCTTGCAGCCATCTGCTCAGCTTTGATACTTTGACATGAACAGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTGGTGAGTATTGTTATCTTGTCAGAAATGTATATAATGCAGGTCAAATAGTAGATATAACGACTTCAAGCACTTTAGATCCTTCCTTTGAGTTTACGCGATGAGTTTAAGTTCTCTATACTCCAATAGCATAAAAAATATTTACACAATCATTGTGATTTATTAGGTAGTTATCTGTAACCTGTTAAAAATGGTGATTAACATGCTTAAAGCCTTTCCATCATTATCACTCCGTGCGAGTTCACTCGTTGATACTAGACTCTACGTTGTGCAGCTTTTACCAGTCTATTAGTTTGTATGGTGCTTTTGCTTTTGTTACAATTCTGACAAGTGCATTTCGTATGCCTTTGCATTTGACAGGAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAAC</genome_strand>
        <mrna_strand>CGCTTTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAGGTAAGTTCTGAAACTCTACTTTGTTTTGCTTCCTGTTTTCATCTTGCAGCCATCTGCTCAGCTTTGATACTTTGACATGAACAGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG.....................................................................................................................................................................................................................................................................................................................................................................GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCTATGACTTACTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374416" ref_strand="+" ref_description="SGN-E374416 [TUS-33-P20](-)">
      <seq>tcatgggcatgtgggaattcaaataacggatcacagttgtttgctgaaggttactcctcaagacattcacgaccattgtctactctaggactgcgtagtagtgaccgaaatgggagaactagggtatccagtgataggtacagatcgttggctggtgaggcaggtttccgtgagcaagttgcatctgagggcgtgattattccagaccgctctacttattatgggtccagaagcatgtttgaccagcatagggacatgagacttgacattgacgacatgggctatgaggagcttctggctctgggagaaagaattggccatgtcaatactggcttgtcggaggaactgatttcaaagtgcatgaccgagtcaatttattgttcctcaggccaaaatcatgaggaaggaaattgtgttatctgtctggaagagtatgttaacatggatgatgtcgggacgttgaaatcgtgcatccatgattttcatgttggatgcataagaagatggctgtcaatgaagaacgtgtgtccaatctgcaagaaaactgcgttggatgacgacgatctgaaggaaaaatgatttatttagccatgacttgctgggcattgaacttgtgtaaatatgtatttagaacatttctcaaatggggggaaaactagtatcacctcataagtttgtacagaaaatgtttttcatgtcattagtcgtttctttcaaatgtctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="18838" stop="21309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19138" g_stop="19327" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19328" i_stop="20028" i_length="701">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20029" g_stop="20127" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="288" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20128" i_stop="20211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20212" g_stop="20349" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="426" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20707" g_stop="21008" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="728" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E374416" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19138" e_stop="19327"/>
          <exon e_start="20029" e_stop="20127"/>
          <exon e_start="20212" e_stop="20349"/>
          <exon e_start="20707" e_stop="21008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAGGTGTGTATGCTCATCTTATACAAGATATTGGCATGTCGTCCTTTTGTGAGGGGCTTAGCTTCTGTCTAGGCTCCCTATATCAAATACACAAGTCTTTTGCATCATGGGTGTGACTAGTTCTCTTGCATTGTGCCACATGAATGTCCAGTCTTTTGTTCTTCTTTTCCTCTTACGAAAATATGACCTTTCTGCTTCATGCCAGAAGAATGTCCCAGTCTTATTTTGCTTTACATGTGTGTATATGTATTGGTGTAAATCCTTTTCAATGTAAATCATAGATGCTACCCAGGTGTATTTTGTGCATTTGTTTGATCAGCTAATGTAAGGGAAAATGCGCTTCACTTTGAAATATCAACTGGGAATATGCATGCTGGTATATTTTTGATATGTAGGTCTGTGTCATCAATTTAAGCTGTTTATGTTTACTGTTTGACTTGTGATCCTTCTTACATACAATCAGTCTTGATGAAATTCATTCAAGGATCCTTAATTTTTTTCATCAATTTTTATTACTCATAATTTAGTGGATTTATTTTGCTTTCTTGTATGGACACTTGTGTATTCCAATCTGGCATAGTGGGGAATACAAATAGCGGTAGATGGTAACTTGGCTTAAATATGATATTTTCGTTCATCATTTCTACCATCTCTGAACCATAACTCCTTTGAGACATGTTGAATGTGAAACTTTGGGCTTTCAGGGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAGGTAAGTTCTGAAACTCTACTTTGTTTTGCTTTCTGTTTTCATCTTGCAGCCATCTGCTCAGCTTTGATACTTTGACATGAACAGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTGGTGAGTATTGTTATCTTGTCAGAAATGTATATAATGCAGGTCAAATAGTAGATATAACGACTTCAAGCACTTTAGATCCTTCCTTTGAGTTTACGCGATGAGTTTAAGTTCTCTATACTCCAATAGCATAAAAAATATTTACACAATCATTGTGATTTATTAGGTAGTTATCTGTAACCTGTTAAAAATGGTGATTAACATGCTTAAAGCCTTTCCATCATTATCACTCCGTGCGAGTTCACTCGTTGATACTAGACTCTACGTTGTGCAGCTTTTACCAGTCTATTAGTTTGTATGGTGCTTTTGCTTTTGTTACAATTCTGACAAGTGCATTTCGTATGCCTTTGCATTTGACAGGAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCTAAAGA</genome_strand>
        <mrna_strand>TCATGGGCATG-TGGGAATTCAAATAACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAG....................................................................................GAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG.....................................................................................................................................................................................................................................................................................................................................................................GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217820" ref_strand="+" ref_description="SGN-E217820 [cLEL-23-O1](-)">
      <seq>aagaattggccatgtcaatactggcttgtcggaggaactgatttcaaagtgcatgaccgagtcaatttattgttcctcaggccaaaatcatgaggaaggaaattgtgttatctgtctggaagagtatgttaacatggatgatgtcgggacgttgaaatcgtgcatccatgattttcatgttggatgcataagaagatggctgtcaatgaagaacgtgtgtccaatctgcaagaaaactgcgttggatgacgacgatctgaaggaaaaatgatttatttagccatgacttgctgggcattgaacttgtgtaaatatgtatttagaacatttctcaaatggggggaaaactagtatcacctcataagtttgtacagaaaatgtttttcatgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="19932" stop="96966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20232" g_stop="20349" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20707" g_stop="20979" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="391" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20980" i_stop="22143" i_length="1164">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22144" g_stop="22160" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="408" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E217820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20232" e_stop="20349"/>
          <exon e_start="20707" e_stop="20979"/>
          <exon e_start="22144" e_stop="22160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTGGTGAGTATTGTTATCTTGTCAGAAATGTATATAATGCAGGTCAAATAGTAGATATAACGACTTCAAGCACTTTAGATCCTTCCTTTGAGTTTACGCGATGAGTTTAAGTTCTCTATACTCCAATAGCATAAAAAATATTTACACAATCATTGTGATTTATTAGGTAGTTATCTGTAACCTGTTAAAAATGGTGATTAACATGCTTAAAGCCTTTCCATCATTATCACTCCGTGCGAGTTCACTCGTTGATACTAGACTCTACGTTGTGCAGCTTTTACCAGTCTATTAGTTTGTATGGTGCTTTTGCTTTTGTTACAATTCTGACAAGTGCATTTCGTATGCCTTTGCATTTGACAGGAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCTAAAGAATCTCCTTATTACCTCTTCTCTGTTTTACTTTCACTCTCTTATCAAATCGAAACGTAAGCTAGACCTGTGAAAGTCAAGCACTAGTGCGGGGGACCTGAGAGGCGGTGGTTTACCTTGCGGTGGATGTCAGCGGTTCGAGTTCGGAAGGTTCCTTTCTTCCCTCCGCCTTTACGGGGACGTAAGAGAAGGTACCTTCTTTATTCCTCTTCCTTAATGCGGACAATATTACACATATATAATTTTAAGTATTCACAAGTAGATCTGTATAAGTAATATGTGTGTCCTATGTGGCTATGTGACATAATATATGTTGGACGATATGTAGGATGTCACGTATGATATGAATTACCAGGTAGGATGTCAAGTAAGACACACGTGTTTACTTGTTCAACTCTAGGTTAAGAGGATGTCTAGATTAACTTTAAAGTTGGTCAAACTTACTTTCAAGTCGGTTTTCGATTTGTAAAGTGTTTGACAAATATAAAAATGAATTTAAAAAAAAAGTCAAAAATAACTTATTAATAAGTCAAAATCACAAGTAGTTCTTTCCATACTATTTATTTTTTGACTCAAAAGTCATTTAAGTTTGACTTTTTATTTTTGACCTAAAATCTACCTTGTAAGTCGATCCAAACAGATTCAAGTGTCTACTTGATGCACAGTCAAAGTTGGAAAGCATAAATATCAAATGATCAGGCAAATTTATATCTATGATTTCCCATTGAATCATATTGTAAATTTACCTTTAATTGAATTATATCTTTTGAATATCTTTTTTAAGAGTTACGTCACACTCCAAGTGTCTACTTGATGCACAATCAAAGTTGGAAAGCATAAATATCAAATGACTCTACAAAGTAATACTAGTCAAAACATAGAGTAATTATTTTTATTATTATTTAATAAGTATTTTATATAAAAATTGATCAAACATGCATTTTCTGATTTATTTGCCTTTTTTTTTCCTTTCTAAGGAGTCAAATTATACTAGTACAAAACTAACTAAACAACACCCAAAATAGTCAAACACATTTAATGTTTTTCAATCCAAAATTTTCATAAATCAGATTTTATATCCCCTTTAAGTGTATATATAAAAGCACCTTGAAAAGTAAGACTTAATTCAAGTAAATTAAAAAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>AAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG.....................................................................................................................................................................................................................................................................................................................................................................GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229674" ref_strand="+" ref_description="SGN-E229674 [cLEL-4-O21](-)">
      <seq>tcaatttattgttcctcaggccaaaatcatgaggaaggaaattgtgttatctgtctgaaagagtatgttaacatggatgatgtcgggacgttgaaatcgtgcatccatgattttcatgttggatgcataagaagatggctgtcaatgaagaacgtgtgtccaatctgcaagaaaactgcgttggatgacgacgatctgaaggaaaaatgatttatttagccatgacttgctgggcattgaacttgtgtaaatatgtatttagaacatttctcaaatggggggaaaactagtatcacctcataagtttgtacagaaaatgtttttcatgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="19993" stop="96966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20293" g_stop="20349" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20707" g_stop="20979" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="330" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20980" i_stop="22143" i_length="1164">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22144" g_stop="22160" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="347" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E229674" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20293" e_stop="20349"/>
          <exon e_start="20707" e_stop="20979"/>
          <exon e_start="22144" e_stop="22160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTGGTGAGTATTGTTATCTTGTCAGAAATGTATATAATGCAGGTCAAATAGTAGATATAACGACTTCAAGCACTTTAGATCCTTCCTTTGAGTTTACGCGATGAGTTTAAGTTCTCTATACTCCAATAGCATAAAAAATATTTACACAATCATTGTGATTTATTAGGTAGTTATCTGTAACCTGTTAAAAATGGTGATTAACATGCTTAAAGCCTTTCCATCATTATCACTCCGTGCGAGTTCACTCGTTGATACTAGACTCTACGTTGTGCAGCTTTTACCAGTCTATTAGTTTGTATGGTGCTTTTGCTTTTGTTACAATTCTGACAAGTGCATTTCGTATGCCTTTGCATTTGACAGGAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCTAAAGAATCTCCTTATTACCTCTTCTCTGTTTTACTTTCACTCTCTTATCAAATCGAAACGTAAGCTAGACCTGTGAAAGTCAAGCACTAGTGCGGGGGACCTGAGAGGCGGTGGTTTACCTTGCGGTGGATGTCAGCGGTTCGAGTTCGGAAGGTTCCTTTCTTCCCTCCGCCTTTACGGGGACGTAAGAGAAGGTACCTTCTTTATTCCTCTTCCTTAATGCGGACAATATTACACATATATAATTTTAAGTATTCACAAGTAGATCTGTATAAGTAATATGTGTGTCCTATGTGGCTATGTGACATAATATATGTTGGACGATATGTAGGATGTCACGTATGATATGAATTACCAGGTAGGATGTCAAGTAAGACACACGTGTTTACTTGTTCAACTCTAGGTTAAGAGGATGTCTAGATTAACTTTAAAGTTGGTCAAACTTACTTTCAAGTCGGTTTTCGATTTGTAAAGTGTTTGACAAATATAAAAATGAATTTAAAAAAAAAGTCAAAAATAACTTATTAATAAGTCAAAATCACAAGTAGTTCTTTCCATACTATTTATTTTTTGACTCAAAAGTCATTTAAGTTTGACTTTTTATTTTTGACCTAAAATCTACCTTGTAAGTCGATCCAAACAGATTCAAGTGTCTACTTGATGCACAGTCAAAGTTGGAAAGCATAAATATCAAATGATCAGGCAAATTTATATCTATGATTTCCCATTGAATCATATTGTAAATTTACCTTTAATTGAATTATATCTTTTGAATATCTTTTTTAAGAGTTACGTCACACTCCAAGTGTCTACTTGATGCACAATCAAAGTTGGAAAGCATAAATATCAAATGACTCTACAAAGTAATACTAGTCAAAACATAGAGTAATTATTTTTATTATTATTTAATAAGTATTTTATATAAAAATTGATCAAACATGCATTTTCTGATTTATTTGCCTTTTTTTTTCCTTTCTAAGGAGTCAAATTATACTAGTACAAAACTAACTAAACAACACCCAAAATAGTCAAACACATTTAATGTTTTTCAATCCAAAATTTTCATAAATCAGATTTTATATCCCCTTTAAGTGTATATATAAAAGCACCTTGAAAAGTAAGACTTAATTCAAGTAAATTAAAAAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>TCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG.....................................................................................................................................................................................................................................................................................................................................................................AAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746790" ref_strand="+" ref_description="SGN-E746790 [GI|47104492]">
      <seq>tttataaaaaaaaacaaacaaattatacaaattgacctaagctattccaatcttctataaattgatgggggcactatacatcttttgtataatcaacttcaaagtctactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggggctcactctgtaggacgagttcattgtgtgaacttagtccacaggctttacccaaccgtggaccccactatcgatcccgactacgcaaagtaccttaagggtcgatgcccgtcaccaaaccctgacccggaggctgttttatactcaagatttgatcgcgaaactacaatgattttagacaatatgtactacaagaatatattgaacaaaaaagggttattaattgtggatcaagaattggttagtgatccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttttgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27725" stop="96822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28025" g_stop="28166" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="430" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="578" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="767" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="936" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33102" i_stop="33995" i_length="894">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33996" g_stop="34590" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1531" r_length="595" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E746790" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1532</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28025" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
          <exon e_start="33996" e_stop="34590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACTATAAGC</genome_strand>
        <mrna_strand>TTTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCAT-ATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204368" ref_strand="+" ref_description="SGN-E204368 [cLEC-13-B5]">
      <seq>ttataaaaaaaaacaaacaaattatacaaattgacctaagctattccaatcttctataaattgatgggggcactatacatcttttgtataatcaacttcaaagtctactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatattgcatggttaagtcatgtgatgcatcactatatttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27726" stop="32091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28026" g_stop="28166" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="429" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="577" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E204368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28026" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG</genome_strand>
        <mrna_strand>TTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCAT-ATTGCATGGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200675" ref_strand="+" ref_description="SGN-E200675 [cLEC-9-F7]">
      <seq>ttataaaaaaaaacaaacaaattatacaaattgacctaagctattccaatcttctataaattgatgggggcactatacatcttttgtataatcaacttcaaagtctactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27726" stop="31169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28026" g_stop="28166" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30869" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="360" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E200675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28026" e_stop="28166"/>
          <exon e_start="30651" e_stop="30869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACA</genome_strand>
        <mrna_strand>TTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204141" ref_strand="+" ref_description="SGN-E204141 [cLEC-13-C5]">
      <seq>taaaaaaaaacaaacaaattatacaaattgacctaagctattccaatcttctataaattgatgggggcactatacatcttttgtataatcaacttcaaagtctactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttatcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27729" stop="32018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28029" g_stop="28166" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="426" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31718" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="526" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E204141" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28029" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAA</genome_strand>
        <mrna_strand>TAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTATCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212355" ref_strand="+" ref_description="SGN-E212355 [cLEC-74-E20]">
      <seq>ctactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctanggatggtcttctttggttaggagggccaataaaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27830" stop="33258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28130" g_stop="28166" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="325" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="474" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="663" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32933" g_stop="32958" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="689" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E212355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28130" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="32958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAAT</genome_strand>
        <mrna_strand>CTACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTANGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308327" ref_strand="+" ref_description="SGN-E308327 [cLEZ-6-M21]">
      <seq>tactttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27831" stop="32672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28131" g_stop="28166" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="324" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="473" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32245" g_stop="32372" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="601" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E308327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28131" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATG</genome_strand>
        <mrna_strand>TACTTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214294" ref_strand="+" ref_description="SGN-E214294 [cLEC-77-F20]">
      <seq>tttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27834" stop="32715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28134" g_stop="28166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="321" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="470" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32245" g_stop="32415" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="641" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E214294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28134" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCT</genome_strand>
        <mrna_strand>TTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299513" ref_strand="+" ref_description="SGN-E299513 [cLEW-20-E9]">
      <seq>tttctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgctattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27834" stop="32091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28134" g_stop="28166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="321" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="470" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E299513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28134" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG</genome_strand>
        <mrna_strand>TTTCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGCTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211938" ref_strand="+" ref_description="SGN-E211938 [cLEC-66-G22]">
      <seq>tctcatacaacatcttttttcattcatgaagtttcattgagtgggactacaactagagacctaaaagtccaacaaagtggctggttttggttgctaattaattagtgcaccaaattttcaaatccaatattcctttttccacttcaaagttcaaactagtgcacaattccaaaaccatttgctactatataaattgagcttttgggacatttcatcaaatattggccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="27836" stop="32582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28136" g_stop="28166" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30651" g_stop="30938" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="319" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="468" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32245" g_stop="32282" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="506" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E211938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28136" e_stop="28166"/>
          <exon e_start="30651" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATACAACATCTTTTTTCATTCATGAAGGTATGTTTTCTATGCCCCCCACCCCACCCCCACCCTTTTTTTTTTTGTCTATTATTAATTTTCTACTTGTTTATAATACATGGCCATTTGTCTATATGTTCTTTAACTCAACTCGAATTCAATCGAATTTGTTTTTTCTTGATTTGTATGGGAGAAAGATAAAAGGAAAAATAACGTGATAAATAGTATTAGTGAAATTTGAGTGTTATGTATTTAGATGATGTAAAGTGAATTTGTAGCCATTGAAATTGCAATTTTAGTCTATGTTGGTACTTATTAAGTTAATTAATGATCATTTTCTATTGATTAAGTAATTAATCTCGTGATTTGAATGTACTTAAGTGGAAAAATAGGAATCTTATTATTAGGTAAAAGAAGACAACTAATCCATTTATGAATTCCCCACTTATTCTACCCTTAATTAAGCCAAAAGACAAATTTTAAAAAAATAATAATGAAAGATTTGTCATCAAAATAATAATTGGCTTGGATTTTGACAAAATTATAAATTGGACAAGGTGATTTAATAATTGCTTCCCAAATGACATAGTTCACATTATATATAAAGTATTTTTATACTATCAGAAATTGACTATTTTAGAGCTATATAATTATTATTATTTATTTATTTATTGATAACTATATCGAGTTTGTTATGCAAATTTTCCTATTATTACAAGATAACTTAAGCTTGATTTAAGTATATTGACAGTGTACATAATTTAAACTAGAATTTTATATTAAAACCCCTACAAGCTTCTTTCAACCACCTAAACCACCTTTTGATGTCATGCATAATATATTAATTTTGTTGTGTCCTCCTTAAAGTAAAATTTTACAAACTTCTATCACATGACATTATACTTTTAAATCATATATAGTTGATCCCTAAATTTTTTCTCCACTAATCTTTTAGTGTGTGCCTACAAGGGAAAACATATTAATTTGCAAAGAGTGACACTTTTTTGTGGTTGAAATTAAAAACAAAATGAGTGGATTAGAAGTAATGCTTTTCACTAAATCTAAGACATTGTTTTACAAATACCAAGTTCTCTTCCCCAACCCAAGTATCACACATGAACCGCCCCATTCAAAACTAAAAAGGAAAAAGAATAAACTTTTATCACCAAAAGAATATAAAGTCACGAGTGTCGAGACGCACTGACATACGCAGAATTTTAATATTTAGTAAAGTATAGTAATCTACATATTGTCACTACTCAATTTGCAAGTGATTTTGGTTTTAAAAATGTGTAAGATCGTACCACTTTATTTTCTATCTCAAATTGATATTATAATATGAGATCATTTCAATAATTCATCATACACACCTCATGCTTATAAGATTTGACCGTTCTTTATTCGAAGTTTCACTCTCTGGTTTAAAGCGTGTACAATTATGGATCGAGAGTATGTTCACAATCACCGCACAGTCTGGAGCCCACTGAGCTTCGCTCTGATACCATATCAAATTAGGCCTCGGGTCTAACTCACCCTTCAAAAGTTTATAACTCAAAAAATTTTCTTTTATCTAATCTTTAAAAGAAATCGCACATTCCATTCATCATCCATACCTAAATTAGTTTTGTTTGTTAAAAGACGCAATTCCTCGCTTCAGGTTGGGACTTATTGATCTTAATCAAACCGATTTAATCATATTCGTACCTAGATAGATAAAAGATCGACCCGACTAGAATTATTAAGTTGGGTCATGATTAATATAAATTGGATCGTTATGAAAATATTTTTTTCAATCTGTATACAGACTGATAGGCTCGATTATAAATAAATATGCAGGACCACATCTTCGACCTAATTAACTCCCAAAAGGCCAAAAGGTTAGGTTAGAGGGTGTGTGTGTGTTAGGGAGGGTATTAGCAATATGGCCCACAAAATTCACAACTTCTAATCTTGTTTTGTCAAAGTTAAGATAACACACTATATGCTTAGCATGCTCAATATATATATCTCAATCAACTTTGTTCAATGATCTTGTTCACAAATGGTCAGTTGCCACTTACATTGAAAACAAAAAAAAACTGGTCACTTGTGCAAAATTGAGGTTGACTAGAAGTCTTATCACTAAAGTTATCATATCTTTTAAATTAAAAATGACCATTTATTTTTTTTCTTTCTAATCGTTTAAATTTTTGCAATATATTAATTGTTAACTATATGTTCACTTATCATAACGATTAATTGTTAACTATACTCATTATTTTACCAAATAAAACGATTCAGCTAACAATACAAAGTAAAATGCGAATACATGTTATTTAACGATAACTAAATGATACACATATCTTATTACGATCGACATGTTTGTACATATCAAATGCTACTAAATCTTTACTATTATCTCCCTTTTAAAAGGCATATTGACAAGTTGGAATCAGCTCATATATTATCATATTTTGCTCAATGCTATTGTGCGTATGATCTAATTCTAATTATTTTATGTTAAATTATTGTGATGAAGTACAGTTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGG</genome_strand>
        <mrna_strand>TCTCATACAACATCTTTTTTCATTCATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550787" ref_strand="+" ref_description="SGN-E550787 [TUS-50-L10]">
      <seq>ccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30545" stop="33402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30845" g_stop="30938" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="432" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="601" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E550787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30845" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG</genome_strand>
        <mrna_strand>CCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688495" ref_strand="+" ref_description="SGN-E688495 [t3_tus_50_l10]">
      <seq>ccaaagtacaacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30545" stop="33402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30845" g_stop="30938" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="432" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="601" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E688495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30845" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG</genome_strand>
        <mrna_strand>CCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396495" ref_strand="+" ref_description="SGN-E396495 [TUS-16-E2]">
      <seq>caacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggggctcactctgtaggacgagttcattgtgtgaacttagtccacaggctttacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30553" stop="34352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30853" g_stop="30938" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="235" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="424" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="593" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33102" i_stop="33995" i_length="894">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33996" g_stop="34052" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="650" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E396495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30853" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
          <exon e_start="33996" e_stop="34052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAA</genome_strand>
        <mrna_strand>CAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306210" ref_strand="+" ref_description="SGN-E306210 [cLEY-13-J3]">
      <seq>caacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30553" stop="33341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30853" g_stop="30938" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="235" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="424" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33041" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="533" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E306210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30853" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCAT</genome_strand>
        <mrna_strand>CAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209417" ref_strand="+" ref_description="SGN-E209417 [cLEC-53-J5]">
      <seq>aacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggggctcactctgtaggacgagttcattgtgtgaacttagtccacaggctttacccaaccgtggaccccactatcgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30554" stop="34374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30854" g_stop="30938" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="234" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32932" i_length="1165">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="403" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33102" i_stop="33995" i_length="894">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33996" g_stop="34074" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="482" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E209417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30854" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32933" e_stop="33101"/>
          <exon e_start="33996" e_stop="34074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCC</genome_strand>
        <mrna_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204217" ref_strand="+" ref_description="SGN-E204217 [cLEC-13-D11]">
      <seq>aacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaagaactgttgctctacttggggctcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30554" stop="33402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30854" g_stop="30938" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="234" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="423" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="592" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E204217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30854" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG</genome_strand>
        <mrna_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAAGAACTGTTGCTCTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302494" ref_strand="+" ref_description="SGN-E302494 [cLEW-27-P22]">
      <seq>aacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30554" stop="33379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30854" g_stop="30938" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="234" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="423" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33079" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="570" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E302494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30854" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACT</genome_strand>
        <mrna_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205112" ref_strand="+" ref_description="SGN-E205112 [cLEC-16-M21]">
      <seq>aacacttcattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30554" stop="33265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30854" g_stop="30938" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="234" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="423" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="32965" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="456" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E205112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30854" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="32965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACA</genome_strand>
        <mrna_strand>AACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211004" ref_strand="+" ref_description="SGN-E211004 [cLEC-69-P10]">
      <seq>cattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggggctcactctgtaggacgagttcattgtgtgaacttagtccacaggctttacccaaccgtggaccccactatcgatcccgactacgcaaagtaccttaagggtcgatgcccgtcaccaaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30561" stop="34421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30861" g_stop="30938" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="227" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="416" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="585" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33102" i_stop="33995" i_length="894">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33996" g_stop="34121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="710" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E211004" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30861" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
          <exon e_start="33996" e_stop="34121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTG</genome_strand>
        <mrna_strand>CATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACC-AACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210995" ref_strand="+" ref_description="SGN-E210995 [cLEC-69-L10]">
      <seq>cattacacatcaaagacatggccaattgttcaagatttctcttattgttattacctctacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcacatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatgttgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30561" stop="32698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30861" g_stop="30938" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="227" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32398" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="381" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E210995" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30861" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATA</genome_strand>
        <mrna_strand>CATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCACATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATGTTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266524" ref_strand="+" ref_description="SGN-E266524 [cLEI-5-K22]">
      <seq>atttctcttattgttattacctgtacttcttcacattcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctatccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="30595" stop="33328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30895" g_stop="30938" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="193" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="382" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32933" g_stop="33028" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="478" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E266524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30895" e_stop="30938"/>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATGGTACTTTTCTCCTTACCTTTGAAATTTTATGACTTTATTTGAATTACAATGTATTTGTACTTTCTGTCGAATTATGACTAACTATTTATCAAAACACATTTTAAAGATGCAGACTAGACTAAGTGTCTTAATACAATAGTCAAAAGATGTGTGACGGTTTGATTTGCACATAAATTCCGTCGACGTCACAGTTGACTCGTTTATTTTGAGGCATGAGTATTTTGATAAATACTTAGTGATAGTTCTGATATAAAAACACATAAAATGTGATATTTCAGATGTGTTTTTGATCATTATCTTTTTTTTAAAAAATATATTTTTACCAACTTCTAGATAAAGTACATCTGTATTTTGACTTTAGAGATACTTAATCATAATAAAATTTTGTTTAGATTTATATTTTTTGAGGATAAGTGTAAATTTTTTTCTATAAAGTCAGTAAAATTTAATCGATTACATAAAATTATTTATTATATTTCTCAAGAGACATCATATATATCATACTTCTCAGTACACAAAATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAAC</genome_strand>
        <mrna_strand>ATTTCTCTTATTGTTATTACCTGTACTTCTTCACATTCATAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTATCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338831" ref_strand="+" ref_description="SGN-E338831 [cTOE-21-C9]">
      <seq>aattagaacttttttctaaatatgaaagaacaagttctttctttcgcttctttcgaatgcatacctcaattaatttaacaaaatacttattatatttcatcagtataaatatcgagcaactcttcatctatgtattaactgttgagtcttaattaactgcagtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="31157" stop="32600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31457" g_stop="31767" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32245" g_stop="32300" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="367" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E338831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31457" e_stop="31767"/>
          <exon e_start="32245" e_stop="32300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGA</genome_strand>
        <mrna_strand>AATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206906" ref_strand="+" ref_description="SGN-E206906 [cLEC-33-L24]">
      <seq>ggcacgaggaacaagttctttctttcgcttctttcgaatgcatacctcaattaatttaacaaaatacttattatatttcatcagtataaatatcgagcaactcttcatctatgtattaactgttgagtcttaattaactgcagtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="31178" stop="33355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31475" g_stop="31767" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="481" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32933" g_stop="33055" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="604" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E206906" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31475" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGA</genome_strand>
        <mrna_strand>GGCACG-AGGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215159" ref_strand="+" ref_description="SGN-E215159 [cLEC-78-P6]">
      <seq>ttcataatgtaaaaagtgagctccaattaaattactacacaaagagttgcccaagagctgaagatatcatcaaagaacaagtggcaacattgtaccacaaacatgggaacacagcagtttcttggattagaaatctttttcatgattgcatggttaagtcatgtgatgcatcactatatttggacacagcaaatgggctagaatcagaaaaagaatctccaaggaattttgggatgaggaattttaagtatattgagacaattaaacaagcacttgaaaaagaatgtccaaataccgtttcttgtgcagatattgttgctctttccgctagggatggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaagaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttccagatttcaatcaattggtggtgatactgaaagaactgttgctctacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="31318" stop="33402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31619" g_stop="31767" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="158" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32245" g_stop="32433" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="347" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32933" g_stop="33101" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="516" r_length="169" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E215159" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31619" e_stop="31767"/>
          <exon e_start="32245" e_stop="32433"/>
          <exon e_start="32933" e_stop="33101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAGGTAATTATCATATAAATATTGATATTTTTTTATTCAAAAAAAATTAACTTAAATATTTGCAAATCCAACTACTTAAATTAAAATAATAATGAGATTATCGAATATCGAGTAAATTCAATGATTATTGACATTTCAACCTTCCTTCTTTTATAGATTAATCAAAAGATATATAATTTTACTTTTTTCGTATTTCAGCAGTAACATATTTTTTCGTGAAGTTAATATATGTATATACATGTATAATATGTGAATATATGTATATAATTGGTGTATCATCTATGTGTATTCACTAAAAAAAAAAGAGTAATTCTATCGACTATTTATATAAAGATCATTTACTAAGCATTGTTTATCTCAATTGAAAAAGTAAATAACACTTCAAGACCATTTTTAATTTTTAATTTTTTTTTATTTTTATCCCTTTTTGTATGTGTTTGATTTAAATAATATATGTTTTTTTTAAAAAAAAAATTGTAGTCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGGGTAAGTTCATCTAAAAATTTACTCTGTTTTCTATTTTCACGATTCGAATTTAAGTTATATATACTGAACATCAGAGTAGTATATAGCAATTATTGTCACGTTTTCAATGTCTAATGTTGTTGTATAGTTACAATTATTTGCATATTATGACTATAGAGATTTCGCGTGGTTAAAAATTAATACAAACACAAATTTTTTTGCAAGAGCCGTGTTATGAATGATCTTATTTCACTTTTCAGAGAATATTATTATATATATATATATATATATATATATATATATATAGTGTGTGTGTTTCCGCGACACTACTTCCCTTAAGGTGTCTCTACCCTCTAGGTTCATACTAAGAACCCTAGACGTTTCATATATATAATTTAAATTTTAAACTCAAACATTTATTCTGATAGTGCAAGATTTTTTTTACATAATCTATGTATATTTATTTTAATCTGTTGTAGCACGTAATCGAAATTACTAAATTTTAATTTATGTGATACAGTTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG</genome_strand>
        <mrna_strand>TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAAGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCCAGATTTCAATCAATTGGTGGTGATACTGAAAGAACTGTTGCTCTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204223" ref_strand="+" ref_description="SGN-E204223 [cLEC-13-F13]">
      <seq>atggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggtaatcaactctctaaactctcgtttaatcataaattttttaaaaataattaattatacaaaattatgtttattttgatcgaaaaattcatgtagagttcattcttagggcccgtttggatggacttagctttaaaaaagtacttttaaaagttatgcatttggataaaagtgttgaagttgctatgccaaacgtgaaaatggaaaaatggaagaaagagatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="32632" stop="33798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32933" g_stop="33498" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="580" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E204223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32933" e_stop="33498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTA</genome_strand>
        <mrna_strand>TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374844" ref_strand="+" ref_description="SGN-E374844 [TUS-15-E7]">
      <seq>atggtcttctttggttaggagggccaataaaaattgaaatgaaaacaggaaggaaagatagcaaggaaacttacttttcagaagttgagaagtacctccctaatcacaacgattcaatctcatctgtgctttcaagatttcaatcaattggtgttgatactgaaggaactgttgctctacttggtaatcaactctctaaactctcgtttaatcataaattttttaaaaataattaattatacaaaattatgtttattttgatcgaaaaattcatgtagagttcattcttagggcccgtttggatggacttagctttaaaaaagtacttttaaaagttatgcatttggataaaagtgttgaagttgctatgccaaacgtgaaaatggaaaaatggaagaaagagatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaatataagtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="32632" stop="33772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32933" g_stop="33472" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="554" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E374844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32933" e_stop="33472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTT</genome_strand>
        <mrna_strand>TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAATATAAGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233074" ref_strand="+" ref_description="SGN-E233074 [cLED-6-B15]">
      <seq>gatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataagtttgaggcagttctcaaccatgtaacctaagtcacaaatttatgagtttccaatttatgcactttggttaaaaaaataactattcatataaatttctttttttattattttaatcgaaaaaaatcatctagagtcgattgttagaaatagttgcaacttgcaactatgtaacacagagataataattttgtctttttacgtatctccacttaaataccagacatcactaacttaagtcacaaaccccttgaccttcccaattatatttaagcactagaaaacttatatataaaaaatcgaatttaacgcttaatatttatcaactaacaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33021" stop="34263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33963" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E233074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTA</genome_strand>
        <mrna_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242674" ref_strand="+" ref_description="SGN-E242674 [cLED-30-D2]">
      <seq>gatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataagtttgaggcagttctcaaccatgtaacctaagtcacaaatttatgagtttccaatttatgcactttggttaaaaaaataactattcatataaatttctttttttattattttaatcgaaaaaaatcatctagagtcgattgttagaaatagttgcaacttgcaactatgtaacacagagataataattttgtctttttacgtatctccacttaaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33021" stop="34148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33848" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E242674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACC</genome_strand>
        <mrna_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233735" ref_strand="+" ref_description="SGN-E233735 [cLED-14-G19]">
      <seq>gatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataagtttgaggcagttctcaaccatgtaacctaagtcacaaatttatgagtttccaatttatgcactttggttaaaaaaataactattcatataaatttctttttttattattttaatcgaaaaaaatcatctagagtcgattgttagaaatagttgcaacttgcaactatgtaacacagagataataattttgtctttttacgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33021" stop="34134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33834" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E233735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATC</genome_strand>
        <mrna_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377238" ref_strand="+" ref_description="SGN-E377238 [TUS-19-N14]">
      <seq>gatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataagtttgaggcagttctcaaccatgtaacctaagtcacaaatttatgagtttccaatttatgcactttggttaaaaaaataactattcatataaatttctttttttattattttaatcgaaaaaaatcatctagagtcgattgttagaaatagttgcaacttgcaactatgtaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33021" stop="34104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33804" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E377238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACAC</genome_strand>
        <mrna_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240879" ref_strand="+" ref_description="SGN-E240879 [cLED-24-A9]">
      <seq>gatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataagtttgaggcagttctcaaccatgtaacctaagtcacaaatttatgagtttccaatttatgcactttggttaaaaaaataactattcatataaatttctttttttattattttaatcgaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33021" stop="34054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33754" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E240879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAAT</genome_strand>
        <mrna_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233594" ref_strand="+" ref_description="SGN-E233594 [cLED-14-A5]">
      <seq>gatgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33021" stop="33930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33630" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E233594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAG</genome_strand>
        <mrna_strand>GATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237992" ref_strand="+" ref_description="SGN-E237992 [cLED-18-L5]">
      <seq>atgttagagttatgtggataatttggagattgtataaaaatattaagggcaaaaagataaaaatgtggtcaacttaaaacagcttataagctaaaaaaaaagcacccctaccccagcttttaacttttggcttaaaataagtttttttttttaacttaaaataagttattttgagtattgccaaacaactaaataagtcaaaaatcagtttttaagtcagtttgatcagcttttaagctgaactaaacaagctcttagacaataattttttcttttacgtatctccacttaaatagtagacattataagtttgaggcagttctcaaccatgtaacctaagtcacaaatttatgagtttccaatttatgcactttggttaaaaaaataactattcatataaatttctttttttattattttaatcgaaaaaaatcatctagagtcgattgttagaaatagttgcaacttgcaactatgtaacacagagataataattttgtctttttacgtatctccacttaaataccagacatcactaacttaagtcacaaaccccttgaccttcccaattatatttaagcactagaaaacttatatataaaaaatcgaatttaacgcttaatatttatcaactaacacctaattgtcttttgtttcatttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33022" stop="34287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33322" g_stop="33987" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E237992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33322" e_stop="33987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAA</genome_strand>
        <mrna_strand>ATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374843" ref_strand="+" ref_description="SGN-E374843 [TUS-15-E7](-)">
      <seq>aatttaacgcttaatatttatcaactaacacctaattgtcttttgtttcatttggaaaaaaaataggggctcactctgtaggacgagttcattgtgtgaacttagtccacaggctttacccaaccgtggaccccactatcgatcccgactacgcaaagtaccttaagggtcgatgcccgtcaccaaaccctgacccggaggctgttttatactcaagatttgatcgcgaaactacaatgattttagacaatatgtactacaagaatatattgaacaaaaaagggttattaattgtggatcaagaattggttagtgatccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttttgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33630" stop="96970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33930" g_stop="34595" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E374843" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33930" e_stop="34595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACTATAAGCGTGTT</genome_strand>
        <mrna_strand>AATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391607" ref_strand="+" ref_description="SGN-E391607 [TUS-16-E2](-)">
      <seq>tggggctcactctgtaggacgagttcattgtgtgaacttagtccacaggctttacccaaccgtggaccccactatcgatcccgactacgcaaagtaccttaagggtcgatgcccgtcaccaaaccctgacccggaggctgttttatactcaagatttgatcgcgaaactacaatgattttagacaatatgtactacaagaatatattgaacaaaaaagggttattaattgtggatcaagaattggttagtgatccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttatgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33695" stop="34877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33996" g_stop="34581" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="588" r_length="586" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E391607" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33996" e_stop="34581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGT</genome_strand>
        <mrna_strand>GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTATGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310781" ref_strand="+" ref_description="SGN-E310781 [cLEZ-15-P9]">
      <seq>attcgaacattattattattatttcacttgaagattcaacacagcacagacaaaaaacaatacaacaaaacaaatgcaaccacgagctgatcgcgcagatgataagcatctcgtgtgagatcctactttaaaaaaaaaattacaaccacattacataacaattaaatatccgctaagcactatttacatagcgacatacttttctaatttcaccttgatctccaataagtggattattttcagacaaaataagcatagccctagcaaattgttgatgaaaataattattatcattagccattttcaccacaaatggtgaagtatttggatcactaaccaattcttgatccacaattaataacccttttttgttcaatatattcttgtagtacatattgtctaaaatcattgtagtttcgcgatcaaatcttgagtataaaacagcctccgggtcagggtttggtgacgggcatcgacccttaaagtactttgcgtagtcaggatcgatagtggggtccacggttgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="34874" stop="33746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34574" g_stop="34046" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E310781" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34574" e_stop="34046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAACATTATTATTATTATTTCACTTGAAGATTCAACACAACACAAACAAAAAACAATACAACAAAACAAATGCAACCACGAGCTGATCGCGCAGATGATAAGCATCTCGTGTGAGATCCTACTTTAAAAAAAAAATTACAACCACATTACATAACAATTAAATATCCGCTAAGCACTATTTACATAGCGACATACTTTTCTAATTTCACCTTGATCTCCAATAAGTGGATTATTTTCAGACAAAATAAGCATAGCCCTAGCAAATTGTTGATGAAAATAATTATTATCATTAGCCATTTTCACCACAAATGGTGAAGTATTTGGATCACTAACCAATTCTTGATCCACAATTAATAACCCTTTTTTGTTCAATATATTCTTGTAGTACATATTGTCTAAAATCATTGTAGTTTCGCGATCAAATCTTGAGTATAAAACAGCCTCCGGGTCAGGGTTTGGTGACGGGCATCGACCCTTAAGGTACTTTGCGTAGTCGGGATCGATAGTGGGGTCCACGGTTGGGTA</genome_strand>
        <mrna_strand>ATTCGAACATTATTATTATTATTTCACTTGAAGATTCAACACAGCACAGACAAAAAACAATACAACAAAACAAATGCAACCACGAGCTGATCGCGCAGATGATAAGCATCTCGTGTGAGATCCTACTTTAAAAAAAAAATTACAACCACATTACATAACAATTAAATATCCGCTAAGCACTATTTACATAGCGACATACTTTTCTAATTTCACCTTGATCTCCAATAAGTGGATTATTTTCAGACAAAATAAGCATAGCCCTAGCAAATTGTTGATGAAAATAATTATTATCATTAGCCATTTTCACCACAAATGGTGAAGTATTTGGATCACTAACCAATTCTTGATCCACAATTAATAACCCTTTTTTGTTCAATATATTCTTGTAGTACATATTGTCTAAAATCATTGTAGTTTCGCGATCAAATCTTGAGTATAAAACAGCCTCCGGGTCAGGGTTTGGTGACGGGCATCGACCCTTAAAGTACTTTGCGTAGTCAGGATCGATAGTGGGGTCCACGGTTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357671" ref_strand="+" ref_description="SGN-E357671 [cTOS-24-I14]">
      <seq>cccactatcgatcccgactacgcaaagtaccttaagggtcgatgcccgtcaccaaaccctgacccggaggctgttttatactcaagatttgatcgcgaaactacaatgattttagacaatatgtactacaagaatatattgaacaaaaaagggttattaattgtggatcaagaattggttagtgatccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33761" stop="34774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34061" g_stop="34474" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E357671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34061" e_stop="34474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATC</genome_strand>
        <mrna_strand>CCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377237" ref_strand="+" ref_description="SGN-E377237 [TUS-19-N14](-)">
      <seq>tatcgatcccgactacgcaaagtcccttaagggtcgatgcccgtcaccaaaccctgacccggaggctgttttatactcaagatttgatcgcgaaactacaatgattttagacaatatgtactacaagaatatattgaacaaaaaagggttattaattgtggatcaagaattggttagtgatccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttttgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaatcaaatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33766" stop="34888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34066" g_stop="34577" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="527"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E377237" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34066" e_stop="34577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAA</genome_strand>
        <mrna_strand>TATCGATCCCGACTACGCAAAGTCCCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211336" ref_strand="+" ref_description="SGN-E211336 [cLEC-70-F8]">
      <seq>gagaactagtctcggttttttttttttttttttgattcgaacattattattattatttcacttgaagattcaacacaacacaaacaaaaaacaatacaacaaaacaaatgcaaccacgagctgatcgcgcagatgataagcatctcgtgtgagatcctactttaaaaaaaaaattacaaccacattacataacaattaaatatccgctaagcactatttacatagcgacatacttttctaatttcaccttgatctccaataagtggattattttcagacaaaataagcatagccctagcaaattgttgatgaaaataattattatcattagccattttcaccacaaatggtgaagtatttggatcactaaccaattcttgatccacaattaataacccttttttgttcaatatattcttgtagtacatattgtctaaaatcattgtagtttcgcgatcaaatcttgagtataaaacagcctccgggtcagggtttggtgacgggcatcgacccttaaggtactttgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="96823" stop="33780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35360" g_stop="35329" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35328" i_stop="34578" i_length="751">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34577" g_stop="34080" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="529" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E211336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35360" e_stop="35329"/>
          <exon e_start="34577" e_stop="34080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTAGGTGTCTATGCTCATGTATAGTTGGTCTCCTTCTAATGTCCAATCTTACTGATATAGTGGGTTGATTGAAGTGGATGCTCAACTTTTGCCCCTGCATTCTTTATGAAATGTTACGGATATATACCTTTTGATCAATAAATTTATTAACGATATAATGGAAATATACATATTTTAAATATCAATGATATACACGGTGTATCAATACAAATAGTATATGTATACTTACCCAAACAAATGCATTTTATATGTATATATAACAAAGGTATACATAATGTATATATTATGTAAACGAATTGATTAAAACGTTTGAGATCATACTTATCTCTAAATTGACAACGTTATATTAAGTAGACTTTTAACACAAATACTGAATGGGGTTCAAGTTGTTAAAATCAACATAAATTCTATCAAAAATCGTAAATTGAACGATAGCTTCGCAGCTTCACTACTAATAACAGATACTCGATTAAACTATCTAGTGAGACGCAAGTTGACTTGAACATTATCTTATTATATCAACATAGAATTAGGCAAGTATCCATTATCAACAACCTTTTGGGCTTTTTCTCCACAAAAGTAGTAGTTGGATTAGCAACTAATTCTTGATCCACAATTAAAAGCCCTTTGAGGCCCAAAATATTCTTGTAGTTGGATTATTAACCAATTTGTCAAATATTCTTACAAATCTAACTTCACACCTCTCACAAACTGATTCGAACACCATCATATTATCATTAAGAAAACGACATAACAATGTAACACGCTTATAGTACACTTGATTCGAACATTATTATTATTATTTCACTTGAAGATTCAACACAACACAAACAAAAAACAATACAACAAAACAAATGCAACCACGAGCTGATCGCGCAGATGATAAGCATCTCGTGTGAGATCCTACTTTAAAAAAAAAATTACAACCACATTACATAACAATTAAATATCCGCTAAGCACTATTTACATAGCGACATACTTTTCTAATTTCACCTTGATCTCCAATAAGTGGATTATTTTCAGACAAAATAAGCATAGCCCTAGCAAATTGTTGATGAAAATAATTATTATCATTAGCCATTTTCACCACAAATGGTGAAGTATTTGGATCACTAACCAATTCTTGATCCACAATTAATAACCCTTTTTTGTTCAATATATTCTTGTAGTACATATTGTCTAAAATCATTGTAGTTTCGCGATCAAATCTTGAGTATAAAACAGCCTCCGGGTCAGGGTTTGGTGACGGGCATCGACCCTTAAGGTACTTTGCGT</genome_strand>
        <mrna_strand>GAGAACTA-GTCTCGGTTTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTCGAACATTATTATTATTATTTCACTTGAAGATTCAACACAACACAAACAAAAAACAATACAACAAAACAAATGCAACCACGAGCTGATCGCGCAGATGATAAGCATCTCGTGTGAGATCCTACTTTAAAAAAAAAATTACAACCACATTACATAACAATTAAATATCCGCTAAGCACTATTTACATAGCGACATACTTTTCTAATTTCACCTTGATCTCCAATAAGTGGATTATTTTCAGACAAAATAAGCATAGCCCTAGCAAATTGTTGATGAAAATAATTATTATCATTAGCCATTTTCACCACAAATGGTGAAGTATTTGGATCACTAACCAATTCTTGATCCACAATTAATAACCCTTTTTTGTTCAATATATTCTTGTAGTACATATTGTCTAAAATCATTGTAGTTTCGCGATCAAATCTTGAGTATAAAACAGCCTCCGGGTCAGGGTTTGGTGACGGGCATCGACCCTTAAGGTACTTTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308275" ref_strand="+" ref_description="SGN-E308275 [cLEZ-6-O13](-)">
      <seq>tccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttttgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33946" stop="34877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34246" g_stop="34584" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E308275" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34246" e_stop="34584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACT</genome_strand>
        <mrna_strand>TCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308328" ref_strand="+" ref_description="SGN-E308328 [cLEZ-6-M21](-)">
      <seq>ccaaatacttcaccatttgtggtgaaaatggctaatgataataattattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttttgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33947" stop="34877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34247" g_stop="34584" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E308328" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34247" e_stop="34584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACT</genome_strand>
        <mrna_strand>CCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309275" ref_strand="+" ref_description="SGN-E309275 [cLEY-22-O16]">
      <seq>ttattttcatcaacaatttgctagggctatgcttattttgtctgaaaataatccacttattggagatcaaggtgaaattagaaaagtatgtcgctatgtaaatagtgcttagcggatatttaattgttatgtaatgtggttgtaattttttttttaaagtaggatctcacacgagatgcttatcatctgcgcgatcagctcgtggttgcatttgttttgttgtattgttttttgtttgtgttgtgttgaatcttcaagtgaaataataataataatgttcgaatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="33991" stop="34877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34291" g_stop="34577" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E309275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34291" e_stop="34577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAA</genome_strand>
        <mrna_strand>TTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="48306" stop="47118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48009" g_stop="47402" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48009" e_stop="47402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATCATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTCATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATCGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTATATCTT-AAAAAATGTTGTTTATATTTTTCAATTTCCGTTATGGTTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTAAATCAACTAATTTCTAGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAACTTCAAAACGCAAATGTAGAATCTTTGTGTACTCATGAAGATCTTGAAAAAGATGACGAAGATCGGATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATAT-ATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATC--------G-CGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="48282" stop="47161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47982" g_stop="47459" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47982" e_stop="47459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTCATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATCGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTATATCTT-AAAAAATGTTGTTTATATTTTTCAATTTCCGTTATGGTTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTAAATCAACTAATTTCTAGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAACTTCAAAACGCAAATGTAGAATCTTTGTGTACTCATGAAGATCTTGAAAAAGATGACGAAGATCGGATA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549964" ref_strand="+" ref_description="SGN-E549964 [TUS-5-L24]">
      <seq>gttcattttactcctccgtctcttactcgacggtatcgccttctccgtcgatcggcgtttgaaaattcgatttgtttctccgatttcaagccatggatttcgaagatcatgataacgtgaagaatatggctaaggacgttgaagtgaaaggattcaacccaggattaattgttttaatagttgtcggtgggcttctgttgacattccttgttgggaactacttgctttacatgtatgcacagaaaacccttcctccaaagaaaaagaagccagtttccaagaagaagatgaagaaggaaagactgaagcaaggtgtttccgcacctggagaatagatgccctagacacactgcggttaattcccttgttcatctcgtggaaactatgtgagttcatatttagtgccccgttgtcaaacagatggttggacttgttatcattttcaatttcccgtcatcatagttagagctctcaacttagaacttgttaatgtgtagaattttcccctcttattttcatgttagctgctggagaagttgttctgcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="49613" stop="52790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49913" g_stop="50031" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52490" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="550" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E549964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49913" e_stop="50031"/>
          <exon e_start="52060" e_stop="52490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTGGTACATTTTTTCTTACATATCTCACCTTATTAAACATATTTTTTTGAATTCTCTCATTTTCATGTTATTTCTTACCGGATCTGCTTTTATACGTATGAATTTGTCGTTGTGCTAGTGTGATCTGACACTATTTTAGCTAGATATCGTTAATTCGTTTTTTTCTGTAAACGGAGGTGTTACTGTTGTCCGAGTTAGGTTAAATTTGTTGAGATTTTGTGATACAGATATGTAAACAGTTTTAATTGTTAATGGAGGAATTGGTTGGGATCTTCGGAGGTGTTTTGGGGTAAAATTTTGGTGTTGGAAGTAAAGAATGTGTGTTACTGTTGAATTATGTTAAATTTGCTGAAAGTTTTTGTGATGAGGGATATGTAAACAGTGTAATTGTTAATGGCAGAATTGGTTGGGATTTGCGGAGGTTTTTTTGCAGTAAATTTTTAGCGTTGGTATTATAGAATTTGTATTACTGTTTGAGTTATGATAAATTTTCTGAAAATTTGTGATAGGGATATGTGAACAGAGTAGTTTCTAATGGTGGATTTTCCGAGCTGTGTTGGAGTAAATTTTTGGTGTTGGTAATTTAGACCGTGTGTTACTGTTCGATTTATTTAAATTTGCTGAAATTTTGTGGTAAGGATATGTAAAATGAGGTTTTAAGGTTTGAGTTATGTTAAATTTGTTGAGATTCCTTGATGTGCATATGTAAACGGTGTAATTGTTTATGGAGGAATTGGTTCGATTTGCTGTGGTGTCTTATGGTAATTTTTGGTGTTGGAAATATAAAATGTAGGGAATTGTAGGTTTATTCATTCGGTCTGGTCTGAGCTGCTACAATATTTTTTTTTGGGTGTGATCTGTCGCTTGTTTTAGCTTGATATCGTGAATTCATTGTTTTCTGTAAATGGAAGTGTTACTGTTGTTCGAGTTATGTTAAATTATTTGAAATTTTGTGATACAGATATGTGAAAGCAGTGTCAGTGTCTGTATCGGAAGTGGTTTGATTTTCTAAGGTGTTTTGGAATAAATTTTGGTGTTGGAGATGTAGAATCTAGAGAACTGTAGGTCTTTTGGATGTGATCTATGGTTGCTTGATATCATAAATTCATTGTTATCTGTGAACGGAGGTTCTATGGTTTGAGTTATGTTAATATTGGTGTGAATTTGCAGAAGTTTTTGTGGAGTAAGTGTTTGATGTTGGAAATAAAGAATATAGAGGGCTCTGCATTTATTCATTTATAGTTGTGCTATGTATCAAATTTCTGTCCGGGTGTGATATGTCACCTATGCATATGCTTGCCTAGATATCATGAGTTCATTGTTTTCTGGAGGCTGAGGTGATATGGTTCTTATATGATAAATTTGTTGAAATTTATGTAATATATGGATTTGTAAACAATAATAGTTTAGTGTCGGCACCGGTAAGAATTTTCTGTTTTTTCTCCTGGAGTATATGTTTAGTGTTGGAGATGCACTATGTAGAGATCCATAAATTAAGACATTGGATCTTCAAGAGTTTTGTATTAGTTATGAAGTAGTTATCTATCTAAACATATTCTGAGACATAATTGGACAAAAAATGCAAAGCCCAAAATCCTCTTTATGTTTGGACTTAAAATCACCCCTTAGGTGGCAAGTGCAGTAATAGTCCTCCATGTGTGTGGAACTGGTCCTTTCTTTGTCCAAGTTGATTGTGTGTATTAGGTGTTATGAATATGGTTCTTGGATGTTATTGTGAACACAGATACTTGGAGCCACCCACCCTCACAATTTTTTTTATGGAAAATTTGGTTGAGCTAGACACTGGTGGAATGATATTTGTTGTACTACTTTTCTTTCTGGGGTTGTAGTCTTTTTAACTATTTCCTTGGTCCCATCATAATAGTCTAAGGTTTGTGCGAATTGATTTTAGATTTAGAGAAAGAACACTTCGTGGGCTAATTTTTTTTATGTATCTTTATGAACTCTTATCCTTTCCTAATCACAGATATGGATTAGACAAAAATTTACCTTTGTTCTCTTTTCAAGCAGAAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCTGGAGAAGTTGTTCTGCAAGCT</genome_strand>
        <mrna_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCTGGAGAAGTTGTTCTGCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389901" ref_strand="+" ref_description="SGN-E389901 [TUS-4-L24]">
      <seq>gttcatttcactcctccgtctcttactcgacggtatcgccttctccgtcgatcggcgtttgaaaattcgatttgtttctccgatttcaagccatggatttcgaagatcatgataacgtgaagaatatggctaaggacgttgaagtgaaaggattcaacccaggattaattgttttaatagttgtcggtgggcttctgttgacattccttgttgggaactacttgctttacatgtatgcacagaaaacccttcctccaaagaaaaagaagccagtttccaagaagaagatgaagaaggaaagactgaagcaaggtgtttccgcacctggagaatagatgccctagacacactgcggttaattcccttgttcatctcgtggaaactatgtgagttcatatttagtgccccgttgtcaaacagatggttggacttgttatcattttcaatttcccgtcatcatagttagagctctcaacttagaacttgttaatgtgtagaattttcccctcttattttcatgttagctgctgggagaagttgttctgcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="49613" stop="52789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49913" g_stop="50031" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52487" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="548" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E389901" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49913" e_stop="50031"/>
          <exon e_start="52060" e_stop="52487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTGGTACATTTTTTCTTACATATCTCACCTTATTAAACATATTTTTTTGAATTCTCTCATTTTCATGTTATTTCTTACCGGATCTGCTTTTATACGTATGAATTTGTCGTTGTGCTAGTGTGATCTGACACTATTTTAGCTAGATATCGTTAATTCGTTTTTTTCTGTAAACGGAGGTGTTACTGTTGTCCGAGTTAGGTTAAATTTGTTGAGATTTTGTGATACAGATATGTAAACAGTTTTAATTGTTAATGGAGGAATTGGTTGGGATCTTCGGAGGTGTTTTGGGGTAAAATTTTGGTGTTGGAAGTAAAGAATGTGTGTTACTGTTGAATTATGTTAAATTTGCTGAAAGTTTTTGTGATGAGGGATATGTAAACAGTGTAATTGTTAATGGCAGAATTGGTTGGGATTTGCGGAGGTTTTTTTGCAGTAAATTTTTAGCGTTGGTATTATAGAATTTGTATTACTGTTTGAGTTATGATAAATTTTCTGAAAATTTGTGATAGGGATATGTGAACAGAGTAGTTTCTAATGGTGGATTTTCCGAGCTGTGTTGGAGTAAATTTTTGGTGTTGGTAATTTAGACCGTGTGTTACTGTTCGATTTATTTAAATTTGCTGAAATTTTGTGGTAAGGATATGTAAAATGAGGTTTTAAGGTTTGAGTTATGTTAAATTTGTTGAGATTCCTTGATGTGCATATGTAAACGGTGTAATTGTTTATGGAGGAATTGGTTCGATTTGCTGTGGTGTCTTATGGTAATTTTTGGTGTTGGAAATATAAAATGTAGGGAATTGTAGGTTTATTCATTCGGTCTGGTCTGAGCTGCTACAATATTTTTTTTTGGGTGTGATCTGTCGCTTGTTTTAGCTTGATATCGTGAATTCATTGTTTTCTGTAAATGGAAGTGTTACTGTTGTTCGAGTTATGTTAAATTATTTGAAATTTTGTGATACAGATATGTGAAAGCAGTGTCAGTGTCTGTATCGGAAGTGGTTTGATTTTCTAAGGTGTTTTGGAATAAATTTTGGTGTTGGAGATGTAGAATCTAGAGAACTGTAGGTCTTTTGGATGTGATCTATGGTTGCTTGATATCATAAATTCATTGTTATCTGTGAACGGAGGTTCTATGGTTTGAGTTATGTTAATATTGGTGTGAATTTGCAGAAGTTTTTGTGGAGTAAGTGTTTGATGTTGGAAATAAAGAATATAGAGGGCTCTGCATTTATTCATTTATAGTTGTGCTATGTATCAAATTTCTGTCCGGGTGTGATATGTCACCTATGCATATGCTTGCCTAGATATCATGAGTTCATTGTTTTCTGGAGGCTGAGGTGATATGGTTCTTATATGATAAATTTGTTGAAATTTATGTAATATATGGATTTGTAAACAATAATAGTTTAGTGTCGGCACCGGTAAGAATTTTCTGTTTTTTCTCCTGGAGTATATGTTTAGTGTTGGAGATGCACTATGTAGAGATCCATAAATTAAGACATTGGATCTTCAAGAGTTTTGTATTAGTTATGAAGTAGTTATCTATCTAAACATATTCTGAGACATAATTGGACAAAAAATGCAAAGCCCAAAATCCTCTTTATGTTTGGACTTAAAATCACCCCTTAGGTGGCAAGTGCAGTAATAGTCCTCCATGTGTGTGGAACTGGTCCTTTCTTTGTCCAAGTTGATTGTGTGTATTAGGTGTTATGAATATGGTTCTTGGATGTTATTGTGAACACAGATACTTGGAGCCACCCACCCTCACAATTTTTTTTATGGAAAATTTGGTTGAGCTAGACACTGGTGGAATGATATTTGTTGTACTACTTTTCTTTCTGGGGTTGTAGTCTTTTTAACTATTTCCTTGGTCCCATCATAATAGTCTAAGGTTTGTGCGAATTGATTTTAGATTTAGAGAAAGAACACTTCGTGGGCTAATTTTTTTTATGTATCTTTATGAACTCTTATCCTTTCCTAATCACAGATATGGATTAGACAAAAATTTACCTTTGTTCTCTTTTCAAGCAGAAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCT-GGAGAAGTTGTTCTGCAA</genome_strand>
        <mrna_strand>GTTCATTTCACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCTGGGAGAAGTTGTTCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550264" ref_strand="+" ref_description="SGN-E550264 [TUS-5-L24](-)">
      <seq>gttcattttactcctccgtctcttactcgacggtatcgccttctccgtcgatcggcgtttgaaaattcgatttgtttctccgatttcaagccatggatttcgaagatcatgataacgtgaagaatatggctaaggacgttgaagtgaaaggattcaacccaggattaattgttttaatagttgtcggtgggcttctgttgacattccttgttgggaactacttgctttacatgtatgcacagaaaacccttcctccaaagaaaaagaagccagtttccaagaagaagatgaagaaggaaagactgaagcaaggtgtttccgcacctggagaatagatgccctagacacactgcggttaattcccttgttcatctcgtggaaactatgtgagttcatatttagtgccccgttgtcaaacagatggttggacttgttatcattttcaatttcccgtcatcatagttagagctctcgacttagaacttgttaatgttnagaattgaccctcttattttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="49613" stop="52760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49913" g_stop="50031" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52460" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="519" r_length="400" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E550264" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49913" e_stop="50031"/>
          <exon e_start="52060" e_stop="52460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTGGTACATTTTTTCTTACATATCTCACCTTATTAAACATATTTTTTTGAATTCTCTCATTTTCATGTTATTTCTTACCGGATCTGCTTTTATACGTATGAATTTGTCGTTGTGCTAGTGTGATCTGACACTATTTTAGCTAGATATCGTTAATTCGTTTTTTTCTGTAAACGGAGGTGTTACTGTTGTCCGAGTTAGGTTAAATTTGTTGAGATTTTGTGATACAGATATGTAAACAGTTTTAATTGTTAATGGAGGAATTGGTTGGGATCTTCGGAGGTGTTTTGGGGTAAAATTTTGGTGTTGGAAGTAAAGAATGTGTGTTACTGTTGAATTATGTTAAATTTGCTGAAAGTTTTTGTGATGAGGGATATGTAAACAGTGTAATTGTTAATGGCAGAATTGGTTGGGATTTGCGGAGGTTTTTTTGCAGTAAATTTTTAGCGTTGGTATTATAGAATTTGTATTACTGTTTGAGTTATGATAAATTTTCTGAAAATTTGTGATAGGGATATGTGAACAGAGTAGTTTCTAATGGTGGATTTTCCGAGCTGTGTTGGAGTAAATTTTTGGTGTTGGTAATTTAGACCGTGTGTTACTGTTCGATTTATTTAAATTTGCTGAAATTTTGTGGTAAGGATATGTAAAATGAGGTTTTAAGGTTTGAGTTATGTTAAATTTGTTGAGATTCCTTGATGTGCATATGTAAACGGTGTAATTGTTTATGGAGGAATTGGTTCGATTTGCTGTGGTGTCTTATGGTAATTTTTGGTGTTGGAAATATAAAATGTAGGGAATTGTAGGTTTATTCATTCGGTCTGGTCTGAGCTGCTACAATATTTTTTTTTGGGTGTGATCTGTCGCTTGTTTTAGCTTGATATCGTGAATTCATTGTTTTCTGTAAATGGAAGTGTTACTGTTGTTCGAGTTATGTTAAATTATTTGAAATTTTGTGATACAGATATGTGAAAGCAGTGTCAGTGTCTGTATCGGAAGTGGTTTGATTTTCTAAGGTGTTTTGGAATAAATTTTGGTGTTGGAGATGTAGAATCTAGAGAACTGTAGGTCTTTTGGATGTGATCTATGGTTGCTTGATATCATAAATTCATTGTTATCTGTGAACGGAGGTTCTATGGTTTGAGTTATGTTAATATTGGTGTGAATTTGCAGAAGTTTTTGTGGAGTAAGTGTTTGATGTTGGAAATAAAGAATATAGAGGGCTCTGCATTTATTCATTTATAGTTGTGCTATGTATCAAATTTCTGTCCGGGTGTGATATGTCACCTATGCATATGCTTGCCTAGATATCATGAGTTCATTGTTTTCTGGAGGCTGAGGTGATATGGTTCTTATATGATAAATTTGTTGAAATTTATGTAATATATGGATTTGTAAACAATAATAGTTTAGTGTCGGCACCGGTAAGAATTTTCTGTTTTTTCTCCTGGAGTATATGTTTAGTGTTGGAGATGCACTATGTAGAGATCCATAAATTAAGACATTGGATCTTCAAGAGTTTTGTATTAGTTATGAAGTAGTTATCTATCTAAACATATTCTGAGACATAATTGGACAAAAAATGCAAAGCCCAAAATCCTCTTTATGTTTGGACTTAAAATCACCCCTTAGGTGGCAAGTGCAGTAATAGTCCTCCATGTGTGTGGAACTGGTCCTTTCTTTGTCCAAGTTGATTGTGTGTATTAGGTGTTATGAATATGGTTCTTGGATGTTATTGTGAACACAGATACTTGGAGCCACCCACCCTCACAATTTTTTTTATGGAAAATTTGGTTGAGCTAGACACTGGTGGAATGATATTTGTTGTACTACTTTTCTTTCTGGGGTTGTAGTCTTTTTAACTATTTCCTTGGTCCCATCATAATAGTCTAAGGTTTGTGCGAATTGATTTTAGATTTAGAGAAAGAACACTTCGTGGGCTAATTTTTTTTATGTATCTTTATGAACTCTTATCCTTTCCTAATCACAGATATGGATTAGACAAAAATTTACCTTTGTTCTCTTTTCAAGCAGAAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATG</genome_strand>
        <mrna_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCGACTTAGAACTTGTTAATGTTNAGAA-TTGACCCTCTTATTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390049" ref_strand="+" ref_description="SGN-E390049 [TUS-4-L24](-)">
      <seq>gttcattttactcctccgtctcttactcgacggtatcgccttctccgtcgatcggcgtttgaaaattcgatttgtttctccgatttcaagccatggatttcgaagatcatgataacgtgaagaatatggctaaggacgttgaagtgaaaggattcaacccaggattaattgttttaatagttgtcggtgggcttctgttgacattccttgttgggaactacttgctttacatgtatgcacagaaaacccttcctccaaagaaaaagaagccagtttccaagaagaagatgaagaaggaaagactgaagcaaggtgtttccgcacctggagaatagatgccctagacacactgcggttaattcccttgttcatctcgtggaaactatgtgagttcatatttagtgccccgttgtcaaacagatggttggacttgttatcattttcaatttcccgtcatcatagttagagctctgaacttagaacttgttaatctgtagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="49613" stop="52740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49913" g_stop="50031" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52440" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="500" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E390049" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49913" e_stop="50031"/>
          <exon e_start="52060" e_stop="52440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTGGTACATTTTTTCTTACATATCTCACCTTATTAAACATATTTTTTTGAATTCTCTCATTTTCATGTTATTTCTTACCGGATCTGCTTTTATACGTATGAATTTGTCGTTGTGCTAGTGTGATCTGACACTATTTTAGCTAGATATCGTTAATTCGTTTTTTTCTGTAAACGGAGGTGTTACTGTTGTCCGAGTTAGGTTAAATTTGTTGAGATTTTGTGATACAGATATGTAAACAGTTTTAATTGTTAATGGAGGAATTGGTTGGGATCTTCGGAGGTGTTTTGGGGTAAAATTTTGGTGTTGGAAGTAAAGAATGTGTGTTACTGTTGAATTATGTTAAATTTGCTGAAAGTTTTTGTGATGAGGGATATGTAAACAGTGTAATTGTTAATGGCAGAATTGGTTGGGATTTGCGGAGGTTTTTTTGCAGTAAATTTTTAGCGTTGGTATTATAGAATTTGTATTACTGTTTGAGTTATGATAAATTTTCTGAAAATTTGTGATAGGGATATGTGAACAGAGTAGTTTCTAATGGTGGATTTTCCGAGCTGTGTTGGAGTAAATTTTTGGTGTTGGTAATTTAGACCGTGTGTTACTGTTCGATTTATTTAAATTTGCTGAAATTTTGTGGTAAGGATATGTAAAATGAGGTTTTAAGGTTTGAGTTATGTTAAATTTGTTGAGATTCCTTGATGTGCATATGTAAACGGTGTAATTGTTTATGGAGGAATTGGTTCGATTTGCTGTGGTGTCTTATGGTAATTTTTGGTGTTGGAAATATAAAATGTAGGGAATTGTAGGTTTATTCATTCGGTCTGGTCTGAGCTGCTACAATATTTTTTTTTGGGTGTGATCTGTCGCTTGTTTTAGCTTGATATCGTGAATTCATTGTTTTCTGTAAATGGAAGTGTTACTGTTGTTCGAGTTATGTTAAATTATTTGAAATTTTGTGATACAGATATGTGAAAGCAGTGTCAGTGTCTGTATCGGAAGTGGTTTGATTTTCTAAGGTGTTTTGGAATAAATTTTGGTGTTGGAGATGTAGAATCTAGAGAACTGTAGGTCTTTTGGATGTGATCTATGGTTGCTTGATATCATAAATTCATTGTTATCTGTGAACGGAGGTTCTATGGTTTGAGTTATGTTAATATTGGTGTGAATTTGCAGAAGTTTTTGTGGAGTAAGTGTTTGATGTTGGAAATAAAGAATATAGAGGGCTCTGCATTTATTCATTTATAGTTGTGCTATGTATCAAATTTCTGTCCGGGTGTGATATGTCACCTATGCATATGCTTGCCTAGATATCATGAGTTCATTGTTTTCTGGAGGCTGAGGTGATATGGTTCTTATATGATAAATTTGTTGAAATTTATGTAATATATGGATTTGTAAACAATAATAGTTTAGTGTCGGCACCGGTAAGAATTTTCTGTTTTTTCTCCTGGAGTATATGTTTAGTGTTGGAGATGCACTATGTAGAGATCCATAAATTAAGACATTGGATCTTCAAGAGTTTTGTATTAGTTATGAAGTAGTTATCTATCTAAACATATTCTGAGACATAATTGGACAAAAAATGCAAAGCCCAAAATCCTCTTTATGTTTGGACTTAAAATCACCCCTTAGGTGGCAAGTGCAGTAATAGTCCTCCATGTGTGTGGAACTGGTCCTTTCTTTGTCCAAGTTGATTGTGTGTATTAGGTGTTATGAATATGGTTCTTGGATGTTATTGTGAACACAGATACTTGGAGCCACCCACCCTCACAATTTTTTTTATGGAAAATTTGGTTGAGCTAGACACTGGTGGAATGATATTTGTTGTACTACTTTTCTTTCTGGGGTTGTAGTCTTTTTAACTATTTCCTTGGTCCCATCATAATAGTCTAAGGTTTGTGCGAATTGATTTTAGATTTAGAGAAAGAACACTTCGTGGGCTAATTTTTTTTATGTATCTTTATGAACTCTTATCCTTTCCTAATCACAGATATGGATTAGACAAAAATTTACCTTTGTTCTCTTTTCAAGCAGAAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAAT</genome_strand>
        <mrna_strand>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTGAACTTAGAACTTGTTAATCTGTAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233773" ref_strand="+" ref_description="SGN-E233773 [cLED-14-I16]">
      <seq>ttcattttactcctccgtctcttactcgacggtatcgccttctccgtcgatcggcgtttgaaaattcgatttgtttctccgatttcaagccatggatttcgaagatcatgataacgtgaagaatatggctaaggacgttgaagtgaaaggattcaacccaggattaattgttttaatagttgtcggtgggcttctgttgacattccttgttgggaactacttgctttacatgtatgcacagaaaacccttcctccaaagaaaaagaagccagtttccaagaagaagatgaagaaggaaagactgaagcaaggtgtttccgcacctggagaatagatgccctagacacactgcggttaattcccttgttcatctcgtggaaactatgtgagttcatatttagtgccccgttgtcaaacagatggttggacttgttatcattttcaatttcccgtcatcatagttagagctctcaacttagaacttgttaatgtgtagaattttcccctcttatttcatgttagctgctgggagagttgtctgcaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="49614" stop="52791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49914" g_stop="50031" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52491" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="548" r_length="430" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E233773" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49914" e_stop="50031"/>
          <exon e_start="52060" e_stop="52491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTGGTACATTTTTTCTTACATATCTCACCTTATTAAACATATTTTTTTGAATTCTCTCATTTTCATGTTATTTCTTACCGGATCTGCTTTTATACGTATGAATTTGTCGTTGTGCTAGTGTGATCTGACACTATTTTAGCTAGATATCGTTAATTCGTTTTTTTCTGTAAACGGAGGTGTTACTGTTGTCCGAGTTAGGTTAAATTTGTTGAGATTTTGTGATACAGATATGTAAACAGTTTTAATTGTTAATGGAGGAATTGGTTGGGATCTTCGGAGGTGTTTTGGGGTAAAATTTTGGTGTTGGAAGTAAAGAATGTGTGTTACTGTTGAATTATGTTAAATTTGCTGAAAGTTTTTGTGATGAGGGATATGTAAACAGTGTAATTGTTAATGGCAGAATTGGTTGGGATTTGCGGAGGTTTTTTTGCAGTAAATTTTTAGCGTTGGTATTATAGAATTTGTATTACTGTTTGAGTTATGATAAATTTTCTGAAAATTTGTGATAGGGATATGTGAACAGAGTAGTTTCTAATGGTGGATTTTCCGAGCTGTGTTGGAGTAAATTTTTGGTGTTGGTAATTTAGACCGTGTGTTACTGTTCGATTTATTTAAATTTGCTGAAATTTTGTGGTAAGGATATGTAAAATGAGGTTTTAAGGTTTGAGTTATGTTAAATTTGTTGAGATTCCTTGATGTGCATATGTAAACGGTGTAATTGTTTATGGAGGAATTGGTTCGATTTGCTGTGGTGTCTTATGGTAATTTTTGGTGTTGGAAATATAAAATGTAGGGAATTGTAGGTTTATTCATTCGGTCTGGTCTGAGCTGCTACAATATTTTTTTTTGGGTGTGATCTGTCGCTTGTTTTAGCTTGATATCGTGAATTCATTGTTTTCTGTAAATGGAAGTGTTACTGTTGTTCGAGTTATGTTAAATTATTTGAAATTTTGTGATACAGATATGTGAAAGCAGTGTCAGTGTCTGTATCGGAAGTGGTTTGATTTTCTAAGGTGTTTTGGAATAAATTTTGGTGTTGGAGATGTAGAATCTAGAGAACTGTAGGTCTTTTGGATGTGATCTATGGTTGCTTGATATCATAAATTCATTGTTATCTGTGAACGGAGGTTCTATGGTTTGAGTTATGTTAATATTGGTGTGAATTTGCAGAAGTTTTTGTGGAGTAAGTGTTTGATGTTGGAAATAAAGAATATAGAGGGCTCTGCATTTATTCATTTATAGTTGTGCTATGTATCAAATTTCTGTCCGGGTGTGATATGTCACCTATGCATATGCTTGCCTAGATATCATGAGTTCATTGTTTTCTGGAGGCTGAGGTGATATGGTTCTTATATGATAAATTTGTTGAAATTTATGTAATATATGGATTTGTAAACAATAATAGTTTAGTGTCGGCACCGGTAAGAATTTTCTGTTTTTTCTCCTGGAGTATATGTTTAGTGTTGGAGATGCACTATGTAGAGATCCATAAATTAAGACATTGGATCTTCAAGAGTTTTGTATTAGTTATGAAGTAGTTATCTATCTAAACATATTCTGAGACATAATTGGACAAAAAATGCAAAGCCCAAAATCCTCTTTATGTTTGGACTTAAAATCACCCCTTAGGTGGCAAGTGCAGTAATAGTCCTCCATGTGTGTGGAACTGGTCCTTTCTTTGTCCAAGTTGATTGTGTGTATTAGGTGTTATGAATATGGTTCTTGGATGTTATTGTGAACACAGATACTTGGAGCCACCCACCCTCACAATTTTTTTTATGGAAAATTTGGTTGAGCTAGACACTGGTGGAATGATATTTGTTGTACTACTTTTCTTTCTGGGGTTGTAGTCTTTTTAACTATTTCCTTGGTCCCATCATAATAGTCTAAGGTTTGTGCGAATTGATTTTAGATTTAGAGAAAGAACACTTCGTGGGCTAATTTTTTTTATGTATCTTTATGAACTCTTATCCTTTCCTAATCACAGATATGGATTAGACAAAAATTTACCTTTGTTCTCTTTTCAAGCAGAAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCTGGAGAAGTTGTTCTGCAAGCTA</genome_strand>
        <mrna_strand>TTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTA-TTTCATGTTAGCTGCTGGGAGAGTTG-TCTGCAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723627" ref_strand="+" ref_description="SGN-E723627 [FC21AD11]">
      <seq>ctccgatttcaagccatggatttcgaagatcatgataacgtgaagaatatggctaaggacgttgaagtgaaaggattcaacccaggattaattgttttaatagttgtcggtgggcttctgttgacattccttgttgggaactacttgctttacatgtatgcacagaaaacccttcctccaaagaaaaagaagccagtttccaagaagaagatgaagaaggaaagactgaagcaaggtgtttccgcacctggagaatagatgccctagacacactgcggttaattcccttgttcatctcgtggaaactatgtgagttcatatttagtgccccgttgtcaaacagatggttggacttgttatcattttcaatttcccgtcatcatagttagagctctcaactttagaacttgttaatgtgtagaattttcccctcttattttcatgttagctgccggaaaagttgttctgcaagctactgatttctctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="49690" stop="52803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49990" g_stop="50031" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52060" g_stop="52506" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="490" r_length="448" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E723627" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49990" e_stop="50031"/>
          <exon e_start="52060" e_stop="52506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTGGTACATTTTTTCTTACATATCTCACCTTATTAAACATATTTTTTTGAATTCTCTCATTTTCATGTTATTTCTTACCGGATCTGCTTTTATACGTATGAATTTGTCGTTGTGCTAGTGTGATCTGACACTATTTTAGCTAGATATCGTTAATTCGTTTTTTTCTGTAAACGGAGGTGTTACTGTTGTCCGAGTTAGGTTAAATTTGTTGAGATTTTGTGATACAGATATGTAAACAGTTTTAATTGTTAATGGAGGAATTGGTTGGGATCTTCGGAGGTGTTTTGGGGTAAAATTTTGGTGTTGGAAGTAAAGAATGTGTGTTACTGTTGAATTATGTTAAATTTGCTGAAAGTTTTTGTGATGAGGGATATGTAAACAGTGTAATTGTTAATGGCAGAATTGGTTGGGATTTGCGGAGGTTTTTTTGCAGTAAATTTTTAGCGTTGGTATTATAGAATTTGTATTACTGTTTGAGTTATGATAAATTTTCTGAAAATTTGTGATAGGGATATGTGAACAGAGTAGTTTCTAATGGTGGATTTTCCGAGCTGTGTTGGAGTAAATTTTTGGTGTTGGTAATTTAGACCGTGTGTTACTGTTCGATTTATTTAAATTTGCTGAAATTTTGTGGTAAGGATATGTAAAATGAGGTTTTAAGGTTTGAGTTATGTTAAATTTGTTGAGATTCCTTGATGTGCATATGTAAACGGTGTAATTGTTTATGGAGGAATTGGTTCGATTTGCTGTGGTGTCTTATGGTAATTTTTGGTGTTGGAAATATAAAATGTAGGGAATTGTAGGTTTATTCATTCGGTCTGGTCTGAGCTGCTACAATATTTTTTTTTGGGTGTGATCTGTCGCTTGTTTTAGCTTGATATCGTGAATTCATTGTTTTCTGTAAATGGAAGTGTTACTGTTGTTCGAGTTATGTTAAATTATTTGAAATTTTGTGATACAGATATGTGAAAGCAGTGTCAGTGTCTGTATCGGAAGTGGTTTGATTTTCTAAGGTGTTTTGGAATAAATTTTGGTGTTGGAGATGTAGAATCTAGAGAACTGTAGGTCTTTTGGATGTGATCTATGGTTGCTTGATATCATAAATTCATTGTTATCTGTGAACGGAGGTTCTATGGTTTGAGTTATGTTAATATTGGTGTGAATTTGCAGAAGTTTTTGTGGAGTAAGTGTTTGATGTTGGAAATAAAGAATATAGAGGGCTCTGCATTTATTCATTTATAGTTGTGCTATGTATCAAATTTCTGTCCGGGTGTGATATGTCACCTATGCATATGCTTGCCTAGATATCATGAGTTCATTGTTTTCTGGAGGCTGAGGTGATATGGTTCTTATATGATAAATTTGTTGAAATTTATGTAATATATGGATTTGTAAACAATAATAGTTTAGTGTCGGCACCGGTAAGAATTTTCTGTTTTTTCTCCTGGAGTATATGTTTAGTGTTGGAGATGCACTATGTAGAGATCCATAAATTAAGACATTGGATCTTCAAGAGTTTTGTATTAGTTATGAAGTAGTTATCTATCTAAACATATTCTGAGACATAATTGGACAAAAAATGCAAAGCCCAAAATCCTCTTTATGTTTGGACTTAAAATCACCCCTTAGGTGGCAAGTGCAGTAATAGTCCTCCATGTGTGTGGAACTGGTCCTTTCTTTGTCCAAGTTGATTGTGTGTATTAGGTGTTATGAATATGGTTCTTGGATGTTATTGTGAACACAGATACTTGGAGCCACCCACCCTCACAATTTTTTTTATGGAAAATTTGGTTGAGCTAGACACTGGTGGAATGATATTTGTTGTACTACTTTTCTTTCTGGGGTTGTAGTCTTTTTAACTATTTCCTTGGTCCCATCATAATAGTCTAAGGTTTGTGCGAATTGATTTTAGATTTAGAGAAAGAACACTTCGTGGGCTAATTTTTTTTATGTATCTTTATGAACTCTTATCCTTTCCTAATCACAGATATGGATTAGACAAAAATTTACCTTTGTTCTCTTTTCAAGCAGAAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAAC-TTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCTGGAGAAGTTGTTCTGCAAGCTACTGATTTCTCTATTC</genome_strand>
        <mrna_strand>CTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCCGGAAAAGTTGTTCTGCAAGCTACTGATTTCTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712480" ref_strand="+" ref_description="SGN-E712480 [FB04DH07]">
      <seq>cagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttttttatagttttgccagttatgtaaaacttgaagacctatatgtgttgtgtttataatgtgtatgtgcataaaagacatggattctgctaataatatatgggcttaagttatatgcggccccttgaagttgtccgcatatttcacttagacaccttaagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="81718" stop="79689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81418" g_stop="81390" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80477" g_stop="79995" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="510" r_length="481" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="524"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E712480" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81418" e_stop="81390"/>
          <exon e_start="80477" e_stop="79995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTAATAATATATGGGCTTAAGTCATATGCGGCCCCTTGAAGTTGTCCGCATATTTCACTTAGACACCTTAA</genome_strand>
        <mrna_strand>CAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGAC--TTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTAATAATATATGGGCTTAAGTTATATGCGGCCCCTTGAAGTTGTCCGCATATTTCACTTAGACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702344" ref_strand="+" ref_description="SGN-E702344 [FA18BH03]">
      <seq>cttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttttttatagttttgccagttatgtaaaacttgaagaactatatgtgttgtgtttataatgtgtatgtgcataaaagacatggattctgctaataatatatgggcttaagttaaaaaaaaaaaaaaaaaactcaaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83450" stop="79740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83150" g_stop="82841" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="513" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80046" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="943" r_length="430" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="947" polyA_stop="965"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E702344" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83150" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTAATAATATATGGGCTTAA</genome_strand>
        <mrna_strand>CTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGAC--TTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGAACTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTAATAATATATGGGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222130" ref_strand="+" ref_description="SGN-E222130 [cLEL-36-K2](-)">
      <seq>aggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgaccaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgcaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgactttttttttttatagttttgccagttatgtaaaacttgaagacctatatgtgttgtgtttataatgtgtatgtgcataaaagacatggattctgctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="80756" stop="79755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80456" g_stop="80063" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="411"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E222130" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80456" e_stop="80063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGAC-TTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTA</genome_strand>
        <mrna_strand>AGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGACCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716555" ref_strand="+" ref_description="SGN-E716555 [FB17BF02]">
      <seq>ccgtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttttttatagttttgccagttatgtaaaacttgaagacctatatgtgttgtgtttataatgtgtatgtgcataaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="81892" stop="79778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="209" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80477" g_stop="80078" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="607" r_length="398" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E716555" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAG</genome_strand>
        <mrna_strand>GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGAC--TTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707574" ref_strand="+" ref_description="SGN-E707574 [FA33BF01]">
      <seq>caatatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggccttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgcaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttttttttatagtttttgccagttatgtaaaacttgaagacctatatgtgttggtgtttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83458" stop="79796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83159" g_stop="82841" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="522" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80097" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="905" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="906" polyA_stop="915"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E707574" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83159" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAG-TTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTT-GTGTTTATA</genome_strand>
        <mrna_strand>CAATATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGGTGTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695679" ref_strand="+" ref_description="SGN-E695679 [LH_Ea07C13](-)">
      <seq>attttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccattcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgctgttccgatgggatggacagctgaaggggttcccatgggtcatggagttgtcggtgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctctacctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccgaaagttcaatctcgaggggagctgtgaggcgttcaacaggtttagtgggtgctgcggaagctttattgaggacgaggtgcagcgtgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaacgcccaacaagtgcttgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccgttttcttaaagtttctgaatgctcgaccttttttttaaaggtttgccagttatgtaaaactgaagacctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83445" stop="79812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83147" g_stop="82841" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="510" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80115" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="871" r_length="361" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="872" polyA_stop="887"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E695679" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83147" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCT</genome_strand>
        <mrna_strand>ATTTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCATTCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGCTGTTCCGATGGGATGGACAGCTGAAGGGGTTCCCATGGGTCATGGAGTTGTCGGTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTACCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGAAAGTTCAATCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTTTAGTGGGTGCTGCGGAAGCTTTATTGAGGACGAGGTGCAGCGTGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAACGCCCAACAAGTGCTTGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCGTTTTCTTAAAGTTTCTGAATGCTCGAC-CTTTTTTTTAAAGGTTTGCCAGTTATGTAAAAC-TGAAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691839" ref_strand="+" ref_description="SGN-E691839 [LH_Ea07C13]">
      <seq>tttttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccattcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgctgttccgatgggatggacagctgaaggggttcccatgggtcatggagttgtcggtgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctctacctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccgaaagttcaatctcgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcggaagctttattgaggacgaggtgcagcgtgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaacgcccaacaagtgcttgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagtttctgaatgctcgaccttttttttatagttttgccagttatgtaaaacttgaagacctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83445" stop="79812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83147" g_stop="82841" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="510" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80115" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="872" r_length="362" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="873" polyA_stop="884"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E691839" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83147" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCT</genome_strand>
        <mrna_strand>TTTTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCATTCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGCTGTTCCGATGGGATGGACAGCTGAAGGGGTTCCCATGGGTCATGGAGTTGTCGGTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTACCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGAAAGTTCAATCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGAAGCTTTATTGAGGACGAGGTGCAGCGTGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAACGCCCAACAAGTGCTTGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGTTTCTGAATGCTCGAC-CTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336354" ref_strand="+" ref_description="SGN-E336354 [cTOE-10-D20]">
      <seq>ttgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgcaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttttttttatagttttgccagttatgtaaaacttgaagacctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="80728" stop="79812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80428" g_stop="80115" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="325"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E336354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80428" e_stop="80115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCT</genome_strand>
        <mrna_strand>TTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701364" ref_strand="+" ref_description="SGN-E701364 [FA15DB01]">
      <seq>cttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttttttatagttttgccagttatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83450" stop="79828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83150" g_stop="82841" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="513" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80128" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="861" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E701364" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83150" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAA</genome_strand>
        <mrna_strand>CTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGAC--TTTTTTTTATAGTTTTGCCAGTTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709820" ref_strand="+" ref_description="SGN-E709820 [FA53BB09]">
      <seq>ccgtttatttcttcacaaccccagttccaccgtttccggcgcctccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaacccatttccttcttggtttgatttgtatccatttttcttaaagctttctgaatgctcgactttttttttatatttttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83348" stop="79838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83054" g_stop="82841" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="416" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80138" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="757" r_length="341" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E709820" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83054" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCA-TTTTCTTAAAGC-TTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCC</genome_strand>
        <mrna_strand>CCGTTTATTTCTTCA-CAACCCCAGTTCCACCGTTTCCGGCGCCTCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAACCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTTCTTAAAGCTTTCTGAATGCTCGAC-TTTTTTTTTATATTTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702294" ref_strand="+" ref_description="SGN-E702294 [FA18BC12]">
      <seq>aaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaagattatttcgatgaggagtccaagccatttccttcttggtttgatttgtatccattttcttaaagcttctgaatgctcgacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83457" stop="79854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83157" g_stop="82841" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="520" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80154" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="844" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E702294" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83157" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTT</genome_strand>
        <mrna_strand>AAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710012" ref_strand="+" ref_description="SGN-E710012 [FA53DG10]">
      <seq>cgaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83457" stop="79940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83159" g_stop="82841" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="522" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80240" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="760" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E710012" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83159" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAA</genome_strand>
        <mrna_strand>CGAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730689" ref_strand="+" ref_description="SGN-E730689 [LA24DE08]">
      <seq>cattggaccaattccacacgtatttacacagcattatacatagcacaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggccttcaacaggtctagtgggtgctgcgggagcttcattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgcaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatcccccctaacgagcaaaccatgggccgctaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83536" stop="79941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83236" g_stop="82841" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="599" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80241" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="836" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E730689" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83236" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCA</genome_strand>
        <mrna_strand>CATTGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTCATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721427" ref_strand="+" ref_description="SGN-E721427 [FC13DE03]">
      <seq>aatcggccgaattgagcagtattgacaaaggaccaattccacacgtatttacacagcattatacatagcacaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaaggtcgtgagcttcgtcgtaggcttcctcatcctggctttaaggcccaacaagtgctcgttatgatccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83552" stop="79970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83261" g_stop="82841" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="624" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80270" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="832" r_length="208" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E721427" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83261" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGAAAACTTAGCAGTATTGACAAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGAGCAGTATTGACAAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGTAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728851" ref_strand="+" ref_description="SGN-E728851 [LA19AF09]">
      <seq>aacccacttttacccatncaacatnctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgccaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83408" stop="80040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83108" g_stop="82841" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="471" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80340" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="609" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E728851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83108" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAA</genome_strand>
        <mrna_strand>AACCCACTTTTACCCATNCAACATNCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729023" ref_strand="+" ref_description="SGN-E729023 [LA19CH10]">
      <seq>aacccacttttacccatncaacatnctgaggtgaaagatgagaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggcgttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgagagtcagtttgtgactttgcaactcatttcttctgccacccttgtgctctttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83408" stop="80044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83108" g_stop="82841" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="471" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80344" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="605" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E729023" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83108" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCA</genome_strand>
        <mrna_strand>AACCCACTTTTACCCATNCAACATNCTGAGGTGAAAGATGAGAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCGTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGAGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304230" ref_strand="+" ref_description="SGN-E304230 [cLEX-6-N13]">
      <seq>tttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacatatcccagtcgtacagctatccgccggaagttcaatcttgaggggagctgtgaggccttcaacaggtctagtgggtgctgcgggagctttattgaggacgaggtgcaacgcgagcaatgtgagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83445" stop="80093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83145" g_stop="82841" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81390" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="508" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80477" g_stop="80393" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="593" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E304230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83145" e_stop="82841"/>
          <exon e_start="81592" e_stop="81390"/>
          <exon e_start="80477" e_stop="80393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAGGTAGGTTGTCTGTCTAAAAATTTTACCCTTCTGAAGATGATTTACTTAAGCTCATTCTATGTTATGATCCACTGATTCATTTCTACTTTCAGTGTATGTGTTTCTTCTTTCCAATGCTCTGCTTCATATCTTCCTCCTCTTTTATATATATTTTCCGCATCAAAGTGAAAAATCTATTTTTGGAAAGTCCTATGTGGATTTTGCTCACTGTAATCTAACCCTGGCCCAAGCTCATAACTGTTGGTCCGGTACGAGTGTATAAGTTTGTTGTAAGAAATACTTTCTAACAGGTAGTTCAGCAGTAAGAGTTTTGTGGTAGTGACTTTAAAAGATAAAGTGGTGCACATATCTTTCTAAAAATTGGTATAGTGGTTCACACTTTCTTATAAAAAATGTGAAGTGGTTTACACATCCTTATTAAAAAAATGGTAAAGTGGTCCACACATTCTTATAGAATATGTAAAGTGGTTCAGACTAGGTTCAATCATATCAATTAACTGGCAACATGACCTAAGAATTGGTCCATTCTCTCTATTTAACTTTTCATTCGGATTTATGTATCTATTTGGTTAGGATCGGGACTTGATACTTGATCAGTAAATCTTGAACTTTTTTTGTATAAGGATAGAGATTTGCAGGGATTTATCGCAAAAAAGTAAAATAGATAAAAGAAGGTAGAGATTTGAAGAAAACTTTTCTGCTTGTGACTTATCAAAAAGAAAAAGAAGAGAATTCAACAACATACCAGTGTAATCCCACGAGTGGGGGAGGGGGGGGGGGGGTTCTAGGGAAGGTGATGTGTATGCCTACTTAACCCCTATTCGGTCAAGTTCGTCCAGATGGTTGTAGTCGCAGTTCTATAAGTTTTATCCCAGTTAAGAGTTTGTAAATCCAAATTTGTATCCTCTACAGGGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAG</genome_strand>
        <mrna_strand>TTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698624" ref_strand="+" ref_description="SGN-E698624 [FA07AC09]">
      <seq>ctcttctaaaggaccaattccacacgtatttacacagcattatacatagcacaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgacaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgccgtagtgatattgaaccttgtttactaggtaccatggccccatgcgtgctctacgggagcaatgctgacagacttgcctctgctccagggacttttgacaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcaaactgcgtggcaccttgcctttacatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83535" stop="81127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83243" g_stop="82841" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81427" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="569" r_length="167" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E698624" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83243" e_stop="82841"/>
          <exon e_start="81592" e_stop="81427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGACAAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTG-CTTTACATATCC</genome_strand>
        <mrna_strand>CTCTT-CTAAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGACAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCCGTAGTGATATTGAACCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTACCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGACAGACTTGCCTCTGCTCCAGGGACTTTTGACAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCAAACTGCGTGGCACCTTGCCTTTACATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731981" ref_strand="+" ref_description="SGN-E731981 [LA28DC05]">
      <seq>acaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgacaagaaacccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcaccactgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgacagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctccgaactgtgtggccacccttgctttacatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83492" stop="81127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83192" g_stop="82841" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81427" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="521" r_length="169" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E731981" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83192" e_stop="82841"/>
          <exon e_start="81592" e_stop="81427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCT-CGAACTGTGTGG-CA-CCTTGCTTTACATATCC</genome_strand>
        <mrna_strand>ACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGACAAGAAACCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCACCACTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGACAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCCGAACTGTGTGGCCACCCTTGCTTTACATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272277" ref_strand="+" ref_description="SGN-E272277 [cLEM-19-F17]">
      <seq>aaaggaccaattccacacgtatttacacagcattatacatagcacaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctgagagacttggttctgctccagggacttttgccaatcactgcttgccttacactggcctcttcctaattggacaatccttctttggctcgaactgtgtggcaccttgctttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83535" stop="81130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83235" g_stop="82841" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81430" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="558" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E272277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83235" e_stop="82841"/>
          <exon e_start="81592" e_stop="81430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATA</genome_strand>
        <mrna_strand>AAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266080" ref_strand="+" ref_description="SGN-E266080 [cLEI-6-G20]">
      <seq>gttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaagtagcatggccccatgcgtgctctacgggagcaatgctgagagacttgggtctgctccagggacttttgccaatcactgcttgccttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83449" stop="81193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83150" g_stop="82841" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81493" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="410" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E266080" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83150" e_stop="82841"/>
          <exon e_start="81592" e_stop="81493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACAC</genome_strand>
        <mrna_strand>GTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAAGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGGTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308818" ref_strand="+" ref_description="SGN-E308818 [cLEZ-14-H1]">
      <seq>aaaggaccaattccacacgtatttgcacagcattatacatagcacaaatttcttcaccaatctttcaaaattcctcaaaaatcttcttgatttcatcaaaatcccaatggcaaataccgatgaatcgaacccacttttacccaatcaacaatctgaggtgaaagatgagaagaatcccaataaacccatttcttcaacaaccccagttccaccgtttccggcggatccggtgaagcctttatcagccgttgttccgatgggatggacagttgaaggggtccccatgggtcatggagttgtcgttgatccgattatgaatagggctcagtgggattctggactttgtgcttgttttggaaggactgatgagttctgcagcagtgatattgaagtttgtttactaggtagcatggccccatgcgtgctctacgggagcaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="83535" stop="81245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83235" g_stop="82841" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81592" g_stop="81545" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="443" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E308818" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83235" e_stop="82841"/>
          <exon e_start="81592" e_stop="81545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTTGTGAGTATTTTTCATGATTTTTTTTTTATGTTTTTGATTGAGGTGTAGTTGATTGATTGTTTATCGAACTTTATGCTGTGATTGAATTAAATGTCTGTATTTTCTTGTTTTTAATTAGTCGTAGCTACCCAAATTAGTTCACTACTGAGGTTCAATTGATTGATTGGTTATTTAGATTTTATGCTATAATGGATTAAATGTTTGTGGATTGAAATTTGTGGGATGATCTTTGCTTTGTTAACCTCAGCGAGGTTTAGGATTGGGGTATAGTTGATTGATTGGATCATATCTCTATTTTTGTTTATCAAAATTCGTGGATTGATCTTTTTTTAAAATTAAACTTAGCTATCTAGTTCGTGGATCGAACATAAATGATCAGGCTTAGAAATCTAGTTCAGATGTTGAATTCTAATCTCTACAAAGGTTCAGCCTTTTGCTAAAATCAACTATTGGTTCTTGTGAGTGTGTTCATTGAGTTATGAGCACATATGCTCCTTAATGTTAATGGAAAAAGAACTAGCAAGCAAATGTATGGTCATAGATGATAATTGTAGCTGGGGAATTGTATTTTCCTTTGACAACTAGGATGTTGGAGTTTGTTGCCAAAAAAAAAAAAAGGTAGCCCAGTGGCCAAAGATCCCGTGTTCAGGTAGTGCCCAAGGAAGGGTCGTACCCAATTCCCTTCTCTTAATTTACTTTTGCTTCTTTTGATGACCTGATCAAGTGAGGAAATAGCTATGCTGAGATGGAAGTAGCTGGAACACTTTATCTTTAGATTGTGTTTGCTTGAATCATGTTTGTTCTTCAAGAAATAATGTCTATTTTCCGCAAATGCATCTGCTAGATCAACATTCGAAGTTATATTAATTTTCTAGTCATATGCATATTGCACAAACATCTAACTAACATTTTAAATGATGTTTATAGATAATTGATGTCAACAAACAGTATTTTCAAGGTATTAATCAGTGTAATGTAATTGAGTAGTTTGCATCCACTACCAAATCTACAAAGGCAGGACCATTAGCAAGATGCGCACATGCTCGTTTCTATGTGTCTCCCGTGCTTTACTGAATTAATTCTACTTTTGCTAGTTCTTTTGTCTGATTGCTATATTTCTGCAATATGGTTTTCCTGTTGATGTTCCAGACTTACTTCCCTTTCCGGGATCAAAAGTTTTCCTGGTTTCTCCTTAATTTGTTTTTATTTATCATACTGATCTGATAAATGACCATCATGTCTCTGCAGGTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTG</genome_strand>
        <mrna_strand>AAAGGACCAATTCCACACGTATTTGCACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277620" ref_strand="+" ref_description="SGN-E277620 [cLER-6-I3]">
      <seq>aaaaatggatttatcaaaagtgaatgcctcagaaatttatgaaattgattatagaggaccagaaactcatactaaaatgcctccacaaagagtaggaagacataataatcatcatcgaggcacgttgtttcatcccaatgctactaagcctggaaaaaatgggaagaaaaaccatggatgatgtagtaatagtttaatataattataattaatggtgtgatttttagatttatatgggcaaagagtgcgtgtccttatttttatgaagcaatcgaaaatatatatgtttgaacttctttattatatagtttactttcatgtaataatatagagtatgtaattaatttccaaatgctttgagattgattttacttttatattatgatatatatatctactaaagtttgtgtcttaatnnaaaaaaaaaaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="86417" stop="84596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86117" g_stop="85958" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85957" i_stop="85152" i_length="806">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85151" g_stop="84894" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="418" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="440"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E277620" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86117" e_stop="85958"/>
          <exon e_start="85151" e_stop="84894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAATGTAAGAAAACTTTATTCTTGAATATTTTAGTGTACTATATTTTTGTATTATCAAAATTAGACTTAATATTTTATTCGTTTTAGATTTGATTGTATCGTAGCTCTATAATTTGAAATGTTATTAATCGTTGAAGTATAGTTTAGTATTTTAAAGGGGAACTTTAGGATAAAGATAACATATTAGGATAAAGATAACGTTATTTTATAGTAATTTACATATAGCTCAAAAATTTAAACTGTGAAGATGATAATTAATGCTTGTGTTAAGGGAGTAGAGTGGACTTTTATATGCTTTATCCATCGAGTTTTTCCTTTTTATGTAATTAGAGTTGTTTAGTATTGTAAAGACGGAATTTGTAAGGAATAATAAAATTATTTTTGTGTGATTTATATATAAGTCGTAAATTTAAATTATAAAAGTAACAATTAATGCTTTTTCAGAATGATATATAAGTCGTTATATCACCCTTTGTTCGGAGTTCCTTTGACTTTGCATGAATATATGCATGATATTTCATGCATCAAACTGCTTTCTTTTTTATGTTATTAGGACAATTTAGTATTTTAAAAAACTTTCGAAGAACAATAAAATTACTTTTGTATAATTTATATATAAATCATGAATTTAAATTGTGGAATTGATAATTAATAGGTATTAGATTACTACTATACACTTTGTCTTCATTGGCCTTCAACGATATTTTATGTATCGAATCGTCTTTCTTTTTTATCTTTTTAGTGTAGTTAGATATTATGTGATAACATATTAGTTATAATTTTTTCTTATATTATTTTTTTATTCTGCAGGGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGGGCAAAGAGTGCGTGTCCTTATTTTTATGAAGCAATCGAAAATATATATGTTTGAACTTCTTTATTATATAGTTTACTTTCATGTAATAATATAGAGTATGTAATTAATTTCCAAATGCTTTGAGATTGATTTTACTTTTATATTATGATATATATATCTACTAAAGTTTGTGTCTTAATAA</genome_strand>
        <mrna_strand>AAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGGGCAAAGAGTGCGTGTCCTTATTTTTATGAAGCAATCGAAAATATATATGTTTGAACTTCTTTATTATATAGTTTACTTTCATGTAATAATATAGAGTATGTAATTAATTTCCAAATGCTTTGAGATTGATTTTACTTTTATATTATGATATATATATCTACTAAAGTTTGTGTCTTAATNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540065" ref_strand="+" ref_description="SGN-E540065 [TUS-60-C9]">
      <seq>tttttccccaatgagtacttataataattctcattagcaaatttcatcactcttttagcataaaataaaacatatatatacattcttgatcaagatcttgatctttaccatgaagcttaagtgtaacttcattgtcatcttcttccttctcctcctcgcctcgccttcctcaggaaaaatggatttatcaaaagtgaatgcctcagaaatttatgaaattgattatagaggaccagaaactcatactaaaatgcctccacaaagagtaggaagacataataatcatcatcgaggcacgttgtttcatcccaatgctactaagcctggaaaaaatgggaagaaaaaccatggatgatgtagtaatagtttaatataattataattaatggtgtgatttttagatttatatgggcaaagagtgcgtgtccttatttttatgaagcaatcgaaaatatatatgtttgaacttctttattatatagtttactttcatgtaataatatagagtatgtaattaatttccaaatgctttgagattgattttacttttatattatgatatatatatctactaaagtttgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="87144" stop="84600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86844" g_stop="86672" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86671" i_stop="86119" i_length="553">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86118" g_stop="85958" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="334" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85957" i_stop="85152" i_length="806">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85151" g_stop="84900" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="586" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E540065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86844" e_stop="86672"/>
          <exon e_start="86118" e_stop="85958"/>
          <exon e_start="85151" e_stop="84900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCCAATGAGTACTTATAATAATTCTCATTAGCAAATTTCATCACTCTTTTAGCATAAAATAAAACATATATATACATTCTTGATCAAGATCTTGATCTTTACCATGAAGCTTAAGTGTAACTTCATTGTCATCTTCTTCCTTCTCCTCCTCGCCTCGCCTTCCTCAGGTTTGTACTTATTCAGATGCGGAACTAGAATGAGTTTCGTGAGTTTAACTGCATGTTTCGTTATTTTTTAGTTTGAATATGTATCGATTAACACTACTTTTAAAATTACTATAATATACTCTCTAAATCCTAAATTCGTCTATGTTTGTATACTTGAAGTTTATGAGATATGCTTAGTTACATGCTTACTATAATTGATAATAGAAGAAAAAGGAACTTTATATATATGTGTAAAAATAATTATATTTTTTTTCCTTTTCTACAATAAGAATAATTATATATATAATTATCACAAGTAGGTAGGAGCACTAAATTAATTGCGACATGGATGGAGCACTAAAAACAATTGAAAAAAAAAAGGGTCCATGTTGTTGGTTATAAAATTAAATAAATTTTCAAAATTTATCGTGTTAACTTACCACGTTTAAATTCTGATTCTGCTACTTAATTAAGCTACATCTATCTTGATATTTATGAACCATTCTTGATTTTTTTTTTTTTTAAATAATTTTTTTGCTTACTATAATTTCACTTTAATTTTGTTTTTTTATAGGAAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAATGTAAGAAAACTTTATTCTTGAATATTTTAGTGTACTATATTTTTGTATTATCAAAATTAGACTTAATATTTTATTCGTTTTAGATTTGATTGTATCGTAGCTCTATAATTTGAAATGTTATTAATCGTTGAAGTATAGTTTAGTATTTTAAAGGGGAACTTTAGGATAAAGATAACATATTAGGATAAAGATAACGTTATTTTATAGTAATTTACATATAGCTCAAAAATTTAAACTGTGAAGATGATAATTAATGCTTGTGTTAAGGGAGTAGAGTGGACTTTTATATGCTTTATCCATCGAGTTTTTCCTTTTTATGTAATTAGAGTTGTTTAGTATTGTAAAGACGGAATTTGTAAGGAATAATAAAATTATTTTTGTGTGATTTATATATAAGTCGTAAATTTAAATTATAAAAGTAACAATTAATGCTTTTTCAGAATGATATATAAGTCGTTATATCACCCTTTGTTCGGAGTTCCTTTGACTTTGCATGAATATATGCATGATATTTCATGCATCAAACTGCTTTCTTTTTTATGTTATTAGGACAATTTAGTATTTTAAAAAACTTTCGAAGAACAATAAAATTACTTTTGTATAATTTATATATAAATCATGAATTTAAATTGTGGAATTGATAATTAATAGGTATTAGATTACTACTATACACTTTGTCTTCATTGGCCTTCAACGATATTTTATGTATCGAATCGTCTTTCTTTTTTATCTTTTTAGTGTAGTTAGATATTATGTGATAACATATTAGTTATAATTTTTTCTTATATTATTTTTTTATTCTGCAGGGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGGGCAAAGAGTGCGTGTCCTTATTTTTATGAAGCAATCGAAAATATATATGTTTGAACTTCTTTATTATATAGTTTACTTTCATGTAATAATATAGAGTATGTAATTAATTTCCAAATGCTTTGAGATTGATTTTACTTTTATATTATGATATATATATCTACTAAAGTTTGTGTCT</genome_strand>
        <mrna_strand>TTTTTCCCCAATGAGTACTTATAATAATTCTCATTAGCAAATTTCATCACTCTTTTAGCATAAAATAAAACATATATATACATTCTTGATCAAGATCTTGATCTTTACCATGAAGCTTAAGTGTAACTTCATTGTCATCTTCTTCCTTCTCCTCCTCGCCTCGCCTTCCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGGGCAAAGAGTGCGTGTCCTTATTTTTATGAAGCAATCGAAAATATATATGTTTGAACTTCTTTATTATATAGTTTACTTTCATGTAATAATATAGAGTATGTAATTAATTTCCAAATGCTTTGAGATTGATTTTACTTTTATATTATGATATATATATCTACTAAAGTTTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287636" ref_strand="+" ref_description="SGN-E287636 [cLES-9-M5]">
      <seq>ttttccccaatgagtacttataataattctcattagcaaatttcatcactcttttagcataaaataaaacatatatatacattcttgatcaagatcttgatctttaccatgaagcttaagtgtaacttcattgtcatcttcttccttctcctcctcgcctcgccttcctcaggaaaaatggatttatcaaaagtgaatgcctcagaaatttatgaaattgattatagaggaccagaaactcatactaaaatgcctccacaaagagtaggaagacataataatcatcatcgaggcacgttgtttcatcccaatgctactaagcctggaaaaaatgggaagaaaaaccatggatgatgtagtaatagtttaatataattataattaatggtgtgatttttagatttatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="87143" stop="84775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86843" g_stop="86672" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86671" i_stop="86119" i_length="553">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86118" g_stop="85958" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="333" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85957" i_stop="85152" i_length="806">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85151" g_stop="85075" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="410" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E287636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86843" e_stop="86672"/>
          <exon e_start="86118" e_stop="85958"/>
          <exon e_start="85151" e_stop="85075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCAATGAGTACTTATAATAATTCTCATTAGCAAATTTCATCACTCTTTTAGCATAAAATAAAACATATATATACATTCTTGATCAAGATCTTGATCTTTACCATGAAGCTTAAGTGTAACTTCATTGTCATCTTCTTCCTTCTCCTCCTCGCCTCGCCTTCCTCAGGTTTGTACTTATTCAGATGCGGAACTAGAATGAGTTTCGTGAGTTTAACTGCATGTTTCGTTATTTTTTAGTTTGAATATGTATCGATTAACACTACTTTTAAAATTACTATAATATACTCTCTAAATCCTAAATTCGTCTATGTTTGTATACTTGAAGTTTATGAGATATGCTTAGTTACATGCTTACTATAATTGATAATAGAAGAAAAAGGAACTTTATATATATGTGTAAAAATAATTATATTTTTTTTCCTTTTCTACAATAAGAATAATTATATATATAATTATCACAAGTAGGTAGGAGCACTAAATTAATTGCGACATGGATGGAGCACTAAAAACAATTGAAAAAAAAAAGGGTCCATGTTGTTGGTTATAAAATTAAATAAATTTTCAAAATTTATCGTGTTAACTTACCACGTTTAAATTCTGATTCTGCTACTTAATTAAGCTACATCTATCTTGATATTTATGAACCATTCTTGATTTTTTTTTTTTTTAAATAATTTTTTTGCTTACTATAATTTCACTTTAATTTTGTTTTTTTATAGGAAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAATGTAAGAAAACTTTATTCTTGAATATTTTAGTGTACTATATTTTTGTATTATCAAAATTAGACTTAATATTTTATTCGTTTTAGATTTGATTGTATCGTAGCTCTATAATTTGAAATGTTATTAATCGTTGAAGTATAGTTTAGTATTTTAAAGGGGAACTTTAGGATAAAGATAACATATTAGGATAAAGATAACGTTATTTTATAGTAATTTACATATAGCTCAAAAATTTAAACTGTGAAGATGATAATTAATGCTTGTGTTAAGGGAGTAGAGTGGACTTTTATATGCTTTATCCATCGAGTTTTTCCTTTTTATGTAATTAGAGTTGTTTAGTATTGTAAAGACGGAATTTGTAAGGAATAATAAAATTATTTTTGTGTGATTTATATATAAGTCGTAAATTTAAATTATAAAAGTAACAATTAATGCTTTTTCAGAATGATATATAAGTCGTTATATCACCCTTTGTTCGGAGTTCCTTTGACTTTGCATGAATATATGCATGATATTTCATGCATCAAACTGCTTTCTTTTTTATGTTATTAGGACAATTTAGTATTTTAAAAAACTTTCGAAGAACAATAAAATTACTTTTGTATAATTTATATATAAATCATGAATTTAAATTGTGGAATTGATAATTAATAGGTATTAGATTACTACTATACACTTTGTCTTCATTGGCCTTCAACGATATTTTATGTATCGAATCGTCTTTCTTTTTTATCTTTTTAGTGTAGTTAGATATTATGTGATAACATATTAGTTATAATTTTTTCTTATATTATTTTTTTATTCTGCAGGGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGG</genome_strand>
        <mrna_strand>TTTTCCCCAATGAGTACTTATAATAATTCTCATTAGCAAATTTCATCACTCTTTTAGCATAAAATAAAACATATATATACATTCTTGATCAAGATCTTGATCTTTACCATGAAGCTTAAGTGTAACTTCATTGTCATCTTCTTCCTTCTCCTCCTCGCCTCGCCTTCCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327511" ref_strand="+" ref_description="SGN-E327511 [cTOC-20-A3]">
      <seq>ttggtttggccaatggcggttttgacgatgtattcgagggtgtatttgggttatcatacggttgcacaggtgtttgctggtgctgctttgggaactgtgcttggtgggggttggttttggattgttaacaatgtgctcagttgtttgtttcctgctattgaagagagtgcttttgggaggttcttttatgttaaggatacttctcatattcctaatgttttgagatttgagtatgagaatgcaaggtctgcgaagaaacacccgtcctacaagcgtgctgattgattactcgttgttcactgtacaaggggagtcttcaatatgttccagaatgagatatttcgaaagagtgaaacttgatgttgaaccagcttgatcaactcggatttgatggtttggaggttcacttacttcttagacgtttgtcgctacttcctttacttggacaactttatagttttgatctgatatttatgttttaactgtttgtaaatggatcaagaaggaaaggtataacaggtagttacaaagttatagtgtacttgctcctacactctttgcaagttctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="120698" stop="107037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120398" g_stop="120097" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120096" i_stop="107723" i_length="12374">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107722" g_stop="107689" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="336" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107688" i_stop="107573" i_length="116">
            <donor d_prob="0.863" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107572" g_stop="107337" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="571" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E327511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120398" e_stop="120097"/>
          <exon e_start="107722" e_stop="107689"/>
          <exon e_start="107572" e_stop="107337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTATGAGAATGCAAGGTCTGCGAAGAAACACCCGTCCTACAAGCGTGCTGATTGATTACTCGTTGTTCACTGGTAAGAGAATTTATGTTCTTTTTGTTACAATGGTGATGATTATGATGTGAAATGAGCTTCAATGTAGAAGTGTGGACCATATAGCAGACACTAACTTGATTGGCACTGAGGCGTAGTTGTTGTAATTTGTTTATTTTAGACAACCTTTATTTTGTCTAAAATTACATATTATTATTTGGATGTCGGAATGAAATGTGTCCAAGTGGAGTGGAATGTATATTGAGTATTCATATAACAGATATTACTGTATGCGATTGATATTAGTTGTTGTTGTTATTATTATAGTTTTGTGATATGATTGTTATAGCCGGCACCAACTTGATTGGAAATGAGGCTTAGTTATTATACTTTGTTTAGTCTATTTATCTTAGAGAATACTTAGTCAGAGGAGAATTTAGGAGTTTTATAACATGATTGCACCACTAAAAAAAGGATAAAAAGGAAGTATAAGTGGGAATTAATGCTTTGCTCCTTTATGTTAATAACTTAGCATTCAACCAAGTGCACCATTTAGCCCTCTTGGAGCATAGGTGCCAACAGATGATATTAGATCAGTTGTAGGAAATATGTACATAAAATATCTAATTTGGTGTATAGACCATGTGATCGGGCACCATCAAATGCCCTATAAACCCTCCCTCTTCCTGCCCTTCATTTGTGTAAAAGTACGCATTATTATTTGAGTTTTGGAATGAAATGACTCCAAGTGGCCCGGAGTGTTTGAGGATTCATATAGCAGCCCCAAAAAGTTTGGGCTTGACTGTAGTTGTTGTAGTGTGTTGTTCTTATAGTTAACTGTGGCTGAAGTATGACTAGGTTCGTATTGTGAATGAACTACAAGTGGATCGAAAAACATAATAGTGTTTATATTTTTCGATTAATCAGTTTGGTGATATTTGAATGTATACATCATTCTTAGTGTGTTACTAGTTTGTAAGTCAATCATTCCATGTTATAGCACAAAATATTGTTCTGTTTTAAGAAGTCACGGTTGTCTATATATTCCAGAATCTTGTCATGACACAAATTTTTTGTTGGAAAGTTTTGCATTTATCAAGAAAGTAGTCTATCTAACATTACCTGCTAATACTTTGTATATTAGTTTGTATATTAAAACAACAAACATACCTGGTATAATTCCGCAAATGGGGTCTAGGGAGGCTAGAGAATACACATACATTACCCCTACCTCGTGGAGGAAGAGAGACTATTTTCGAAAGACCCTCAGCTCAAGTGCAACAAATAAAAAATTTACATAAAAGGGAACATGACAGTGAAGAAAACATGTCAATTATTAGCGCAAGCAGAACAGGGAATTAAGAGGAAAAAAACAGTAACAACAACGAAATAATATGGTAGCGAAAAGGAAAATGCATGTATAGGACTCATACTATGACATACACAGTGCTCCCAGGCTCCCACCAAGCATAAACCCGCTTCAACTACCTACTACCTTCTACCGTAATCTGTAACCTCCATACCCTCCTATCTAAGGTCACGTCCTCGATAAGCTGAAGTTGTGCCATGTTGTGTCCAATCACCTCCCCCCAACACTTCTTCGGTCTTCCTCTGCCTCTCCTCACACCCACTATATCCAACCTCTCACACCTCCTTATCAGGACATCTAAACATCTTCTTTTCACTAGTCCAAATCATTTCAGGCTCACTTTCCTCATTTTTTCCACCATATAGGCCACTCACACCTTGCCTTGAATATCCTCATATTTGATCTTATCTTTCCTAGTATGGCCCACATCTATCTCAACACACTCATTTCCGCATCTTGCTTCTTTTGAATTGGGAGTTCTTGATTGCCCAAAACTCCGCCCCATACAATAGAGTTGGTCTAACCACCACTCTGTGAACTTATCCTTAAGTTTTGGCTATACCTCTTTTTCAGTCAAGGCTCCGGAAGCGAGCCTTCATTTCATCCACCTTGCACTAATATGGTGTGTGACGTAATCGTCGATATCTTTATTTCCTTAGATTAAAGACCCAATATACTTGAACTTACTCTCTTAGGGATTTCCCAAGTATCAAGCCGCACTTCCACGTCTATCACACTTCCATAACAACATAACTAAACTTGCACTCCCAGTATTCTGCTTTAGTTCTTCTTAAGCTGAACCCTTTCCATCCCAAGAGATTGATCATCTGTGATGTTAGTTTATGGATGAATACTGCAAACTAATGAAAATTCATTATTAACACAAAGTGTACTCAAAAGTAGCTTTTTTTGTTGAATTTGTGAGAAATTTGACCTTCATCTATCTTGGAATTACTTTGTTACTTTCTTGAATCTTAAAGGATATTATGGTGGATTGAAAGATGGTTGAATGAAGGGAAGTTGCCTTCTGATGGGATGTTGGTAGAGTTAAATTTCAGTGCAAATCTATAAAGTTTTAAGACCTCCAAGATGATCCCTTGGTTGAGAAACAAACTTAAAGGTATATGAAATGCCAAATAGATGGAAGCTTGATTTAGACAACATATATAAGTGAAGAGGGACAAGGCAAACAGAAAAACCATGGTGATTTATTTATATATATTATATTTGATGGTGATGTTTGGGTCAGTTTAGAAGCACCTTGACCAACTGGCCACCTGCTGTCTCCCCACCAGTACAGGTAATTCTGCCTAACAGGGCTTAGGAAAATGAGAAGATATGACTCGTGTTTTTGCTTCGTTTGGATTTGAACTTAGAACATCATGGTTCTTCCTCAACATTATTGACCACTAGATCACACCCTCAAAAGCACAAGAAAAGTTCTTCATTATGTCCAATGAACTTGAAGCTAAAGCGTAAGGCCTATCATAGATTTTAAAACTTATCTCTTGCATAATAGAACTGTGTCGACTCGGAATAGCCTGTTCCTATTTATGAATCTAAATTTATAGAATTGAACCAAAACCACCATAGCCTCTTTTTTTTTGTAAAAGTTCGTCAATTGTGAAGAATATCAAGGAACACAAATGGTTAAAAATGATAGAATTGTAAGCATACCAAAAAGCATAGATACTTTAAATTGATACAATGCAAACATCAAGTTTCAGTGAGTTCTTTCCACATGGTCTTGTTCAGCTAGGAGCATCTTCTTTGCCATGCGGATCCTTAAATTCTTCTGTTGTGTCCTTAACTAAGTCCACACGTACTCCATGATTTGTAGGTTTCTGGAGATAAGTTTTCTCTTGGTGTATCTAGTCCCCATTTATCACTTTTAATCATCATATTGTTGCACCTACTTATCTGTGCATATTGAGGCCTACCTAGGTTGTTACATGGACAAATTTGCTTATAGTGAATTGATTAAGACTTGCAATGACCTAAGATGTGATGAAGAAACTAAAGTTCCTTCGATTGTAGGTTAACGTGCTATTTTATCCTTCTTAGCTACGTACTAGCCGAATTAAGGGAGAGTGTTAGTATGTAACTCTCATCTCTTGATTCCGATCTTAAAATGTATAGGTCTAGGCCGAGTCTTATTGTGATCATCGGTTCATGCCGCCAGGACATATTCTCTCATGCCGAGAGCAATTGATGTAAATTAGATTATTTTCCAATAATATACCTTGCTACTTGGAAAACGCTCTGTGAGCATCATAAGTCTTTTTTATTGAAAGACACAATGCACATCATGATTCAAGGATATCCAATGCATGATGCGTCTTAAGTTGAAGGCCCGTATCTCACACCCAAGGATCGTGCACAATCCCAAAATAAGTACTATATTACTAAGTTGCTAGGAACGATTTGATAAGTTGATTTTTCAATTGATTTTTCTAATAACCATATAGAATGTACTCTTCCAGTTTCGGATAATTTTGGAAGACATTTGATCAGAAACCTCAGGCAACAAATTCAATTATCCAAACAGATGATAACTTTAATTCAATCTAACAGCATTTACCAAAATAATAATAAAAGGAATTACTTTCTGACAGACGTGCAAATTTCAAAATAATTGGACTAGTTGTGTTTATAACAACAACTACATACCCGGTGTATCCCACTAGTGGAGTCTGGGAGGATGGTGCATACGCAACTTTACCTCTACCTAGTGAAGATAGAGAGGATGTTAGACCTTCAAGTAAAGTAATGATAAGGTACTAGTCTTCACAGTAAATATTAATGATGCAATTGAAAGTTAAGACTGATCTTAATGGCGTTTAAGCAATATAGGAGAAATAAAAACCAAGAATTGGTTAAGAGACCGGGCATTGCCAATCCAAGAATTAGTACTGAGATAGATCAAGTGTTAAATGATACCTTATGTATTTTGGATGGAATATGTTAAATACATATGTACTTTTTATGGAATACTTTAACTATAGGTCTAATGTATGTGCGTTGTAATGTATGCACTATGGATTTAATGGTACTGGGCATACAATTGCCATTTGCTGATATTACTTCAAAAAAAATCTAGAAAATAACACTGGAAGTGATAAAGATTATGTCAAAAAAGGGAAGTAATTAGCTCAACAACTTCATTTAAGCTAATCAAGGTTAAAAAGTAACAATAAATGTAAATAATTAGAGGTTTAAAATGATCTTATAAGGTTTTATTGAGTTGGAGTTGTCAAATTTTTTCTTGTATCACATTAGGAGAAAATGTACATTTAAATTAAAAACAAAGCTAGTTATTTCACATGTTTTCTTTTCGTTCATAATATAGAATTAACATTATAGAAAAATAAAATGGCACTCGAGTCCACTAGGGGTGTGATCTAGATAGTTCACCTTGATTCAAACATTAGTGGCTGCTTTGATTGCTTGAACCCAGTCAATAGGGCCCGCAGTTAGGAAAATTCATGTGCTATATAATCTAAGCAGTGGAGATGTTAAGCTTGGTCAAGTAAGATCTTGCATTCTGAGTTTACCTATCAAATTTTTGCATCATAAAATTTGATAGGCGATTGCTGTGCATGTCAATTGGCCTTGACGAGGTTTAATAGTTAGACAAAGAACATTAGTACTTCCCTGGGATGAAATTCTTCCTTTTTGTGTTTGATGCCCAAATTGTGTGTTCCTAGTGCATGGTTTAGTAATGCAAAATACATTTGCCTCTTATTGTTATAATTTAAAGGTTGTTATGGTGGTCAGTAATACTTAAAAGATTTATGCACATGAATTACTTACTTCGAAAGAGCAATTGACTTTGTATAGTTAATATCTACATTGCTAATTTAGTAATCAAGGTTGCAAAAGATTGTAGCTAGAAAGGAATAAGTGGAATTTGGAAAAGTATTCTCTAAGGCTAATGTAACTGAGTCAACTTTATTTTGTATTATACAAGAAAGGAACCCCATTTGTGTATGTGCTCCCGATAAAAAGAAAATAAGGTAGTCTATTTCATTACAAACGTGGATGGGGTTGAAAGCAGATTCTATATGGCTCTTGAATATGTCAATAGATATTATATAAACTCATGTCAAAGAGATGCCCACCATCTCACAAAGAGCTAGTCGTGGTGTAATGCATCAATTTTGCTGGACATTGAAATATATAAAAACACTAATTAGTGCACGAGGGTTGTCTTAGATCCATCAATTTCACATTGTTCACTAGTTCGATAAACTATTTCAATTGATTTATCAATCTAGGCAACACAACATCATTAAAGTCTTAAAGATGAAACAAATGAAATGTCCAACTCTTAGTTACACAAGAACTCCATAACCTCCCTTTTTGTCACCTAAAGGCTCAAATAAATGGAAGACTAAAGACTAACAACAATTAACTAAATAACAAAGACAAGACTTGATGAATAGACTCATAATATGAAAACATTAAATAAACATGACTATACACGTGACAAATGAACTTGTGCACCTACTATAAACTTCACAAGCATTCCACTCAAAATTGTTCAAGCTTATTCAACCAAAACATCTTATTTCTTCTTTAATTATTTGTTTTCGCAACGGATAAGCCGGAAAGGGTAATCAAAAGATTGAAATGAAGTTGATTGAGTCTAACGAAGCACCCACTATTACTTACTCAAAAAGAAAAAAAAAGGATTGTTCAAGAAAGTGGATGAGTATTCAACTCTGACAGAGCAGATGTTGGTGTTTTACTCTTTTCACCAGGTGGAAAACCATATTCCTATGGCTCCACGAGTATATATGAGATATGAAATACTGATAATTTTTTTAATTTAAAACTTGATGATCACCAAGGTGAAAGTGATCATGTCGATGTGGGCAAATCAAATGTCTTTGAGGCATTTGAAGAACTTCGTAAAGAAATACAAGCATTGGACAAGAAACAAAAAGAGCACCCTCACTCAGATATACTATTACAGAAATATCTACATTGCTAATTCAGTAGTCAAGGTTGCAAAAGATTGTAGCCAGAAAAAGAATAAATGGAATCTGGAAAAGTATTCTCTAAGGCTAATTTAAGTGAGTGAAATTTATTTTTTCTTGTACATAAAAAGGAACCCCATTTGTGTATGTGCTCCCGAAAAAAAAAAGGTACTCTATTTCATTACAAACGTGGATAGAGTTGAATCCAAATTCAATATGGCTTTTGAACGCCTGATTATGTCAAATATTAGATAAACTCATGTCAAAGAGATGCCCACCATCTCACAGAGAGCTAGCGGTGGTGTAAAATAAATGCATCAATCTCGTTGGAAAAGGAAATAAAGAACACTAATGAGTGCACGAGGGTTGTCTTGGATCTATCACTTTCACATTGTTCACTAGTTCAATTATACGATTTCAATTGATTTACCAATCTAGGCAACACAACATCATTAAAGTTTAAAGATGAAACAAACGAAATTACCAATTCTTAATTACACAAACTCCATAACCTTCCTTTTTCTTTAAATGCCTCAAAGACATTTGATTTGCCCACGTCGGCATGAGCACCTTCACCTTGGCGATCCTCAAGTTTTAAATTAAAAAAATTATGAGTTATTTCATCTTTACTCGTAAAGCCATAGGAATATGGTTTTCCACCTGGTGAAAAGAGTAAAACACCTACATCTGCTCCGGTCAGAGTTGAATACTCATCCGTTTTCTTGAACAATCCTTTTTCCTATTTTGGGAAAGTAACAGTGTGTGCTTCCTTAGATTCAATTAACTTCATTTCAATCTGTTGCCTACCCTTTCCGGTCTTTTTATTCATTGCGAATACAAATAATCAAAGAAGAAATAAGATGTTTTGGCTGGATAAGCTTGAACAATTTTGAGTGGAATGCTTGTGAAGTTTATAATAGGTGCACAAGTCCATTTGTCACGTGTATAGTCATGCTTATTTAATGTTTTCATATTATGAGTCTATTCGTCATGTTTATTGACATGTTTATTTGTTGTTTTCACATTATGGGTCTATTCTTCACGTGTATTTACACATGCGTTTAGGGTTTTCATATTATGAGTTTATTTGTCATGTTTGTTTAATGTTTCCATATTATGAGTCTATTCACGTGTATTATCATATTCATTTATTGTTTTTACATTATGAGCCTATTCGTTACATGTATTGTATTGTCACATTAATTCAGTGTTGTGGATCTGTCATGGGATTACCCGGAATCCCAACAAAAATTGTTTCTTGTTTATTCAATTGCAATGGCAAAGTAATAATGTTGAATTGAATCTAAAGAAAAATGAGAAATAATAATTCTTTTAATTTACATATAATGTTAATTTGAAAGGGGAACTTCGAAGCAATGTTAAAGTTGTTTCCGTAGGTCATGTGTTTGTTGTTCAATACGGGTGCGGATCTAGAGTTCAGGGTCCTTCATGATAAGATTCGAGAGTTGTTGAAATTTGCTTTTAGTTACTTGAGTAGTTTTTAACAAAATAAGTTGTTTAGTTTAAGATAAACTTGAATTTTGAATTTTAGTTAGTTTGTTTATGTTTGAATTTTAGTTAGTTTTCTTAGATTTATCAATTTCACATTGTTCACCAGTTTGATAAACAATTTCAATTGATTTATCAATCTAGGCAACACAACATCTTTAAAGTCTTAAAAGATGAAACAAAAAAAATCCAACTCTTAGTTACACAAGAACTCCATAGCCTTCCTTTTTGTCACCTAAAGGCTCAAATAAATGGAAGACTAAAGACTAACAACAATCAAGCTTAACAACAAAGACAAGACTTGATGAATAGACTCATAATATGAAAACATTAAATAAACATGACTATACACGTGACAAATGGACTTGTGCACCTACTATAAACTTCACAAGCATTTCACTCAAAATTGTTCAAGCTTATTCAACCAAAACATCTTATTTCTTCTTTAATTATTTGTTTTCGCAACGGATAAGTCGGAAAGGGTAATCAAAAGATTGAAATGAAGTTGATTGAGTCTAACGAAGCACACACTATTACTTACTCAAAAAGGAAAAAAAGGATTGTTCAAGAAAGCGGATGAGTATTCAACTCTGACGGAGCAGATGTTGGTGTTTTTACTCCTTTCACCAAGTGGAAAGTCATATTCCTATGGCTCCACACGAGTATCTATGAGATATGGAATAATGATAATTTTTTTAATTTAAAACTTGATGATCACCAAGGTGAAAGTGATCATGTCGATGTGGGCAAATCAAATGTCTTTGAGGCATTTGAAGAACTTCATAAGGAAATAAAAGAGCACCCTCACTCAGATATACTATTACACAAATATCTACATTGCTAATTCAGTAATCAAGGTTGCAAAAGATTGTAGCCAGAAAAGGAATAAGTGGAATCTGGAAAAGTATTCGCTAAGGCTAATTTAACTGAGTGAACTTTATTTTGTATTGTACAAGAAAGGAACCCCATTTGTGTATGTGCTCCCGAAAAATAAAATAAGGTACTTTATTTCATTACAAACGTGGATAGGGTTGAAACCAGATTTGATATGACTTTTGTACACCTGAATATGTCTATAGATATTAGATAAACTCATGTCAAAGCGATGCCTACCATCTCACAGAGAGCTAGCCGTGGTGTAAAAAAAATGCATCAATCTCACTGGAGAATGAAATATAAAAGAACGCTAATGAGTGCACCAGGGTTTTCTTAGATCCATCACTTTCACATTGTTCACTAGTTCGATAAACGATTTCAATTGATTTACCAATCCAGGCAACACAACATCATTGAAGTCTAAAGATGAAACAAATGAAATGACCAACTCTTAATTACACAAGAACTCCATAACCTTCCTTTTCTTCAAATGCCTTAAAGTCATTTGATTTGCCCACATCGACAGAGCACCTTCACCTTGGCGATCCTCTAGTTTTAAATTAAAAAATTATGAGTTATATCTTTACTCGTGAAGCCATAGGAATATGGTTTTCCACTTGGTGAAAAGAGTAAAACACCAACATCTGCTTCGGTCAAAGTTGAATTCTCATATGTTTTTTGAACAATCCTTTTTCCCGTTTTGGGAAAGTAACGGTGTGTGCTTCCTTAGATTCAACCAATTTCATTTCAATCTTTTGCCTACATTCATTGCGAATACAAATAATTAAAGAAGAAATAAGATGTTTTGGTTAAATAAGCTTGAACAATTTTACAATGCTTGTGAAATTTATAATAGGTGCACAAGTCCATTTGTCACGTGTATAGTCATGCTTATTTAATGTTTTCATATTATGAGTCTATTTGTCACGTTTATTGACATGTTTATTTGTTGTTTTCACATTATGAGTCTATTTGTCACGTGTATTTACGCATGCTTTTAGTGTTTTCATATTATGAGTTTATTCGTCATGTTTGTTTAATGTTTCCATATTATGATATTCACGTGTATTATCATATTCATTTATTGTTTTTACATTATGAGCCTATTCGTCACATATATTGTATTGTCACATTTATTCAGTGTTGTGGATCTATCTATCATGGGATTACCCGGAATCCCAACAAAAATTGTTTCCTGTTTATTCAATTGCAATGGCAAAGTAATAATGTTGAATTGAATCTAAAGAAAAATGAGAAATAACAATTCTTTTAATTTACATATAATGTTAATTTGAAAGGGGAAATTTGAAGCAATGTTAAAGTTGTTTCCGTAGGTCACGAGCTTGGTGTTCAATACGGGTGCGGATCTAGAGGTCAGGATCCTTCATTTTAAGATTCGAGGGTTGTTGAAATTTGCTTTTAGTTACTTGAGTAGTTTTTAACAAAATAAGTTGTTTAGTTTGAGATAAACTTAAATTTTGAATTTTAGTTAGTTTGTTTATGTTTGAAATATTTTAGGTCGTTTAAATTTCATAGAGTGGGTCGTGAAAGCAAGAATTATGTCTCGAGTTAAAGAACTCTTTTCTTGAGAGGAAGTATATTTTCTTGAGTAACATGTGTAATTATATAACAACATAACTAGTGAAGTCTCACAAGTAGGATTTGGGAGGGAGGGTAGAGTGTGTACAGACCTTTACCCCTAATACCTAGAGCAAATCAAGTAGTTATAATGTGAAGGAATAATTGTATTTCCATAAATTAGGATACTTTTCTCTTTGTATAGGACACATTAAGTTCCAAGTTAGGCCTATTAGACTCTTAAGTGTGCCATGGTTCCTCCATCCTTGTCTTTAATACAGAACGTAGTACATTCTTGTATTTTATACATGACTTAACTCTTCTCTAGAGAACCTTTTCCTTCTCACATCTTAATGGCTATAAATATGCATGGCTGTTGATTTAATTTTGGAGGGAGGCTTGCTTGACTTCTCACAGAGGAGAAATTTCTAGATCAAGTATGAAGGAGTGAAAGACTTCTACTTTATTATTTTAACCTTTCCTTCTCAAAATACTTGTAGCCTCATGAGTACATTTCTTCTATGTGATGTTTGTATAGTGAATTAGTGAAATATGTGAAATTACACATGCTTCTCCCGTAAGTTTGCATCACCATTTCCTCCAAATGGTACTAGTATCATTCTGAGAGGTATACGTAATGCATGCTCATTTTGCAATTAAGTGTTTGTGAAATGTTGTTAACATGTGTACTTTGACGACCTTGTTTTGTACTCCTGTTTATAAACTGATTTGGAATAGAAGTTTGAAAGAAACAATATATGACACTAATTCAAAAAATAATTTGAAGTGAGTTGTGCTGGACTTTGTGGATAGATTTTTTGCCTTGAATGTATTACTTATGGTGAAGTCAAATGATTAGCGATTTGAAAATTTCTAGAGAGTGATACAATTTTGTGTAGTAGCACAAAACATAACAGTTAGCTATCCGGTTCCAGCCTTGTTCTGATTGCACGAATTTGTTTTTAATTTTGTCCAAATGTGATGTAGTTTGTACAACGTCCTGTGGATAATGGGAATGAGAGGTGCAATTAGGACTCTATATCCCATTATATAAGAAGAGTATAGATGCAGGCATAGGTAAAAGGGCATTCATCAATAAAGGGAGTGGGTGAGACCATGGTGAGGAGTTTCCTAAGGAGAAAGTATGAGTGGAGTTGGTAGCTGCGAAGAAGACACAATAACTGGTCTCAACGGTTTCAGCATGGATTTATTTCATTGTTTCTGGAACATAGCCAGGAGTGACATCATTGAAGGTGGTAGAAGACTATTGAAGTATGGAGAAATTAGAATAGGATTTCGACGCATCTTTTACTGCAGTTATTCTAAAAGATGGTTGAGCATGCTACCTCTCGTGCTTGCATCTTTACTGCAGTTATTCTAAAAGATGGCGGAGCATGCTTCATCTCGTGCTTGCAGGGCAAAGGGAAGGGAATACATAGGTGAATATATGAATAAAACTGTGTCACACTTGATTTTTAAAATTATAGACAAGCATGTAATAATCATATTAAGTGCTCCACATTAGTTGAGGAAATAGACTATTTTCTCTATATATGGTTTTGAGCAACGTTCACCTCATAAGCTAGCTTTTAGAGTTGATTTAAAGCAACTATTCATTTTTTTAAGATGGTGTTAGAGCCAAACACATCCTTGTTCTTGGTTCGCTCAATATCATCCACATAACAGATTATCCATTGTGGGCATGCAGCAGCAGGAGGGAGAGTGTTAAGTGTCCCACATTGGTTAAGGGAATATATCTTGTTTTCTTTATATGATCTTGGACAATTCTCTCCTCATAAAATAATTTTTGGGGTTGAGTTAGACTCAGATGTCTGTTTATTAACAAATTATAACATGCAGTAGCCTCGATATATTACCTATTCTTCCTTCTACCTTAATGTAATCCATCAGATATATAAGAAAGCATAAAATGTTGTCACACTATAAGAGATGCAATATAACACCAGATTGATTTTGTAATGTATAACCTAAACAATGCCTTATACATTTGTAATAATCTGTCCATTGCAATATGTATCGATGTGTATTGACCAAGAGCTATTTTTCTTTTCCGAATTGCTGCTTCAAATTCATTTTGCTAGTACAAGGGGAGTCTTCAATATGTTCCAGAATGAGGTGATTCTTTATGGAACTTGTTATTGCAGTACACTGCTCTCCAACTTCATGCTAATATTTCTATTTCATTACTCCGGGCGAGTTCTTTGATTCTTTCTCCCTTTTGACTGTTGTAGATATTTCGAAAGAGTGAAACTTGATGTTGAACCAGCTTGATCAACTCGGATTTGATGGTTTGGAGGTTCACTTACTTCTTAGACGTTTGTCGCTACTTCCTTTACTTGGACAACTTTATAGTTTTGATCTGATATTTATGTTTTAACTGTTTGTAAATGGATCAAGAAGGAAAAGGTATAACAGGTAGTTACAAAGTTATAGTGTACTTGCTCCTACACTCTTTGCAAGTTCTGAG</genome_strand>
        <mrna_strand>TTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTATGAGAATGCAAGGTCTGCGAAGAAACACCCGTCCTACAAGCGTGCTGATTGATTACTCGTTGTTCACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704213" ref_strand="+" ref_description="SGN-E704213 [FA23CF09]">
      <seq>cttccttgtgtagtctttcccacatttctggctccttcaacaactcaatatctgccccccttttcaccgttcttgatttcacttcaattctcaataatcttcaaaagggtgttccctcagtggtttttactcttccccacatcacagatctgactaaaaattcaatctttttcaatgtctcatcatccattgaaagcagtgacacttacccatgttagataccgaaagggggatcaattaggccattttttggcttgggtttcattggttcctgtatttataagccttggtggtttcatttctcactttatctttcgtagagagcttcaaggtatgttctttgcaattgggcttatcatctctcagtttatcaatgaaattataaagaaatctgttcagcaagcccgacccgaaacttgtgcacttcttgaaatgtgtgattctcatggatggccttctagtcattcccagtatatgtttttctttgctgtgtatgttactctattgacttataagagattggggctaatttttagaaatcagttgttggttgctgttgttttggtttggccaatggcggttttgacgatgtattcgagggtgtatttgggttatcatacggttgcacaggtgtttgctggtgctgctttgggaactgtgcttggtgggggttggttttggattgttaacaatgtgctcagttgtttgtttcctgctattgaagagagtgcttttgggaggttcttttatgttaaggatacttctcatattcctaatgttttgagatttgagtatgagaatgcaaggtctgcgaaaaaacacccgtcctacaagcgtgctgattgattactcgttgttcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121261" stop="119797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120961" g_stop="120097" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E704213" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120961" e_stop="120097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTATGAGAATGCAAGGTCTGCGAAGAAACACCCGTCCTACAAGCGTGCTGATTGATTACTCGTTGTTCACTG</genome_strand>
        <mrna_strand>CTTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACT--CAATATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTCAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTATGAGAATGCAAGGTCTGCGAAAAAACACCCGTCCTACAAGCGTGCTGATTGATTACTCGTTGTTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726629" ref_strand="+" ref_description="SGN-E726629 [LA12BE08]">
      <seq>cttccttccttgtgtagtctttcccacatttctggctccttcaacaactcacaacatctgccccccttttcaccgttcttgatttcacttcaattctcaataatctttaaaagggtgttccctcagtggtttttactcttccccacatcacagatctgactaaaaattcaatctttttcaatgtctcatcatccattgaaagcagtgacacttacccatgttagataccgaaagggggatcaattaggccattttttggcttgggtttcattggttcctgtatttataagccttggtggtttcatttctcactttatctttcgtagagagcttcaaggtatgttctttgcaattgggcttatcatctctcagtttatcaatgaaattataaagaaatctgttcagcaagcccgacccgaaacttgtgcacttcttgaaatgtgtgattctcatggatggccttctagtcattcccagtatatgtttttctttgctgtgtatgttactctattgacttataagagattggggctaatttttagaaatcagttgttggttgctgttgttttggtttggccaatggcggttttgacgatgtattcgagggtgtatttgggttatcatacggttgcacaggtgtttgctggtgctgctttgggaactgtgcttggtgggggttggttttggattgttaacaatgtgctcagttgtttgtttcctgctattgaagagagtgcttttgggaggttcttttatgttaaggatacttctcatattcctaatgttttgagatttgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121265" stop="119866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120965" g_stop="120166" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E726629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120965" e_stop="120166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTA</genome_strand>
        <mrna_strand>CTTCCTTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709441" ref_strand="+" ref_description="SGN-E709441 [FA52AB10]">
      <seq>cgcatctcaatatctgccccccttttcaccgttcttgatttcacttcaattctcaataatcttcaaaagggtgttccctcagtggtttttactcttccccacatcacagatctgactaaaaattcaatctttttcaatgtctcatcatccattgaaagcagtgacacttacccatgttagataccgaaagggggatcaattaggccattttttggcttgggtttcattggttcctgtatttataagccttggtggtttcatttctcactttatctttcgtagagagcttcaaggtatgttctttgcaattgggcttatcatctctcagtttatcaatgaaattataaagaaatctgttcagcaagcccgacccgaaacttgtgcacttcttgaaatgtgtgattctcatggatggccttctagtcattcccagtatatgtttttctttgctgtgtatgttactctattgacttataagagattggggctaatttttagaaatcagttgttggttgctgttgttttggtttggccaatggcggttttgacgatgtattcgagggtgtatttgggttatcatacggttgcacaggtgtttgctggtgctgctttgggaactgtgcttggtgggggttggttttggattgttaacaatgtgctcagttgtttgtttcctgctattgaagagagtgcttttgggaggttcttttatgttaaggatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121217" stop="119897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120921" g_stop="120197" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E709441" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120921" e_stop="120197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTT</genome_strand>
        <mrna_strand>CGCATCTCAATATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTCAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330107" ref_strand="+" ref_description="SGN-E330107 [cTOD-5-O2]">
      <seq>ttccttgtgtagtcttttccacatttctggctccttcaacaactcacaacatgtgccccccttttcaccgttcttgatttcacttcaattctcaataatctttaaaagggtgttccctcagtggtttttactcttccccacatcacagatctgactaaaaattcaatctttttcaatgtctcatcatccattgaaagcagtgacacttacccatgttagataccgaaagggggatcaattatgccattttttggcttgggtttcattggttcctgtatttataaaccttggtggtttcatttctcactttatctttcgtagagagcttcaaagtatgttctttgcaattgggcttatcatctctcagtttatcaatgaaattataaagaaatctgttcagcaagcccgacccgaaacttgtgcacttcttgaaatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121260" stop="120222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120960" g_stop="120522" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E330107" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120960" e_stop="120522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGT</genome_strand>
        <mrna_strand>TTCCTTGTGTAGTCTTTTCCACATTTCTGGCTCCTTCAACAACTCACAACATGTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTATGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAACCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAAGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329953" ref_strand="+" ref_description="SGN-E329953 [cTOD-5-K18]">
      <seq>ttccttgtgtagtctttcccacatttctggctccttcaacaactcacaacatctgccccccttttcaccgttcttgatttcacttcaattctcaataatctttaaaagggtgttccctcagtggtttttactcttccccacatcacagatctgactaaaaattcaatctttttcaatgtctcatcatccattgaaagcagtgacacttacccatgttagataccgaaagggggatcaattaggccattttttggcttgggtttcattggttcctgtatttataagccttggtggtttcatttctcactttatctttcgtagagagcttcaaggtatgttctttgcaattgggcttatcatctctcagtttatcaatgaaattataaagaaatctgttcagcaagcccgacccgaaacttgtgcacttcttgaaatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121260" stop="120222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120960" g_stop="120522" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E329953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120960" e_stop="120522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGT</genome_strand>
        <mrna_strand>TTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330055" ref_strand="+" ref_description="SGN-E330055 [cTOD-5-K19]">
      <seq>ttccttgtgtagtctttcccacatttctggctccttcaacaactcacaacatctgccccccttttcaccgttcttgatttcacttcaattctcaataatctttaaaagggtgttccctcagtggtttttactcttccccacatcacagatctgactaaaaattcaatctttttcaatgtctcatcatccattgaaagcagtgacacttacccatgttagataccgaaagggggatcaattaggccattttttggcttgggtttcattggttcctgtatttataagccttggtggtttcatttctcactttatctttcgtagagagcttcaaggtatgttctttgcaattgggcttatcatctctcagtttatcaatgaaattataaagaaatctgttcagcaagcccgacccgaaacttgtgcacttcttgaaatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="-" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="121260" stop="120222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120960" g_stop="120522" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="-" ref_id="SGN-E330055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120960" e_stop="120522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGT</genome_strand>
        <mrna_strand>TTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538115" ref_strand="+" ref_description="SGN-E538115 [TUS-57-B8]">
      <seq>caaaggcagactattccagtcctcttatctgggcgtgaatgctttgcttgtgcacctactggttctggcaaaacatttgcttttgtttttcctgtacttatgaaactcaagcacacttcaaaggatggtgtccgagctgtaattctttcccctacaaaagagttagctgctcagacaacaagagaatgcaaaaagttggccaggaagaagttctacatcaggttgatgactaaacaactcgctaaaagtggggacttttctaaactgcgatgtgatgtactgatctcgacaccattgcgcctaaagtttgctatccaaaaaagaaagcttgatttaagtagggttgaatatcttgtcttagatgaatctgataagcttttcgagcctggcatgctagagcaggttgattttgtggtgaaggcgtgcacaaatccttcaattcttcggtcattgttcagtgctactttacccgatatagttgaagaccgagcacgtacaataatgcatgatgctgttcgagtaattattggtaggaaaaattcagcttctgaaacaatagagcaaaaactggtatatgttgggagtgaagaagggaagcttctggctcttcgtcaaagctttgcagagagtttaaacccaccagtgctagtattcgttcaaaacaaggagcgtgccaaggagctatatgacgagttaaaattggaagatattcgagcagatgttatccattcagacctttctcagatacagagagaaaatgctatcgataactttagagctggaaaacatgggttttattgccactgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="123874" stop="127595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124174" g_stop="124203" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124204" i_stop="124297" i_length="94">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124298" g_stop="124378" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="111" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124379" i_stop="124465" i_length="87">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124466" g_stop="124695" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="341" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125413" g_stop="125607" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="536" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125792" g_stop="125882" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="627" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="126931" g_stop="127053" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="750" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="127232" g_stop="127295" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="812" r_length="62" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E538115" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124174" e_stop="124203"/>
          <exon e_start="124298" e_stop="124378"/>
          <exon e_start="124466" e_stop="124695"/>
          <exon e_start="125413" e_stop="125607"/>
          <exon e_start="125792" e_stop="125882"/>
          <exon e_start="126931" e_stop="127053"/>
          <exon e_start="127232" e_stop="127295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGCAGACTATTCCAGTCCTCTTATCTGTATGATCTTCCTGAATTCCGCCACTGTTTTATATACACATGTATCTTTCTTGTTTTCCTTTGAGAATCTTTAATCATGTTTGACTTTCACCAGGGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAGGTACATATATATTGGCATTGTTATGTTGCTCATCATCATTTTTATTATAAGTTAGAAGACATCTGACAGCCATCTTTTTTTTATCAGCACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAGGTACGTTCCTCATTTTCTAGGGTTCAAACTCTTATGTGCTAGTGTGGGTATTTCAGCTTTCAACCTTATTGATATTAAATCAGTGTGGTAAGTACGAGTTTCTGAGGTGATGACATTGAAGATCCCAAGCCGACTGCATAATTTGTACTGTAATTCATAACAAAAAGCAACTGGTGAAGTTAGGGTCTAGTTTAGAGATACAAGGCTTTTTGCTGTACTGCTTGATTTGCACAATCACAATTAGATTAAATTATTTTTTCAGGCTGAGTTTGTCTCATTTTTATCTCATTTTTACTTTTATCATTGTTTATTATTGTTTGTTAACAATAAGCTACCCTAGTATGTTGTTTATGGCATTTCGATTATCACATGATATTATTGCTGTTTTGGCAACTTTTGCGCTGTTTCTTGTTTCAATTTCTCTTCATTGTCTTCTTCTTTATACCGGGATTTGTTGCACTTGAGCTGAGGGTCTTTTGAAAACAGCTGCTCTACCTCCATGAGGTAATCTAAGGTTTGCATACATTCTACCCTCCTCAGACCTCATTTATGGGATAGGTATGTTGTTGTTGCTGAGTTTGATGTAGAGGAGCATAAGCATTGGCTTTATTCCTGTAAACCTAAATGTTACTATTTGGAATTGGTGCTGTGGTGCAAAGTATTTCCTTCTTTTAATCAGCATTAGCATGCCTTTTCACCAACTCCTTATGGGTGCAGGGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAAGTAAGTACTAATAGGCCTTCGGTAGATGTATCTTAACTCTGCAGTGAAGTGAATGGTTATTTGGCTTCATACTCTCTTTTTTATGTTGTTTTGTTGGTGAAGGAGGAGAAGATCTTCCTTCCTCTCCTTTTTCTGACTCTCCATCTTGGTGAATGCTTACTTGGCTGCTTTTGCATTTCTGCAGAAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAGGTATGATCCTCATGTTCCTTAGTCATCAGAACTGATTGTATACCTCTTTGATGTGATTGGAGCCGCCTCTGGCATAATAATTGCTTGCACAACACCTTTACTTATCCCCCAAAAATCCTAGAACAACAATATCTACACAAGGGATTTCACATGGATACTCGTTACTACACAGTTGCTGTGAAACTGTCACTCTTGAAGCACTCTTGTCATATTTAGACGATGCCTTTTTGTAATTTCCGGCATTTTCTTTCTTTCCAGTCACTCAAATGTCCATCTTTGCTGTCAAATTGTTCACTGTTTTCTTTTTCTGCTCACGTGGTCTTTATATTCCCAGAAAATGGGCTCTAGTTGAATCCCCTTGAGCCATTGTTTTGCTGAGAGGGATTTCAACATCTAAGCCGTGCTTCTTGCTTTTTGTTCACTCTATATGAAACTCCTGTTCTCTTTGCTACTCTTACCATTCTGTAAGTTCATACTGTTACTTGAGCGGATCATCTTCTTCTTTTGATAGGCAAAGGGGTGTTACTACCTTCAAAAGCAACTAATCCCCGTTAAAAAATTATTTGCATGCTACAAAGTTTTTCCAGTTGTCTATACAATATGGTTTGCTATGTGTGCTCCAAAAACATAAAAAGAAAGCTTAATAACATAGACGACCCCTTAAACTTGCCAATAAATTTTGAGGGGCTGTCATTAAGCCTTAAAGAAAAGAGGTTTTTTTAGATTTATGTACAAACCGTCAATCTCAGCCCTCAAGGGGAAATTCCAATGGAATATTTCTATTTTACTTCCAAAGTAACATTCTTTTCATCAACACTGCCGGCACTTTCACCAACGCTCAATTGCATTTTCATGGCTCAGTGTGGTGTTTTTATTTGATACCATAGTGATTGTTCCGGAAATTTTACAATCGGTGCTAATTTAGTTAGATCTTCTTGCTATTTTCTTAAGCTGATCTATGATCAACATCTACAATGATTTGTTAACTTCGTAATGTATACCTAATTCATCTTTTTTTTGCATTGCCTGTCTGATTTATTATATGTAGAGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTG</genome_strand>
        <mrna_strand>CAAAGGCAGACTATTCCAGTCCTCTTATCT..............................................................................................GGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAG.......................................................................................CACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA........................................................................................................................................................................................AAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATCGATAACTTTAGAGCTGG-AAAACATGGGTTTT-ATTGCCACTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265642" ref_strand="+" ref_description="SGN-E265642 [cLEI-14-L17]">
      <seq>aaaggcagactattccagtcctcttatctgggcgtgaatgctttgcttgtgcacctactggttctggcgaaacatttgcttttgtttttcctgtacttatgaaactcaagcacacttcaaaggatggtgtccgagctgtaattctttcccctacaaaagagttagctgctcagacaacaagagaatgcaaaaagttggccaggaagaagttctacatcaggttgatgactaaacaactcgctaaaagtggggacttttctaaactgcgatgtgatgtactgatctcgacaccattgcgcctaaagtttgctatccaaaaaagaaagcttgatttaagtagggttgaatatcttgtcttagatgaatctgataagcttttcgagcctggcatgctagagcaggttgattttgtggtgaaggcgtgcacaaatccttcaattcttcggtcattgttcagtgctactttacccgatatagttgaagaccgagcacgtacaataatgcatgatgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="123875" stop="125887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124175" g_stop="124203" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124204" i_stop="124297" i_length="94">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124298" g_stop="124378" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="110" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124379" i_stop="124465" i_length="87">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124466" g_stop="124695" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="340" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125413" g_stop="125587" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="515" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E265642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124175" e_stop="124203"/>
          <exon e_start="124298" e_stop="124378"/>
          <exon e_start="124466" e_stop="124695"/>
          <exon e_start="125413" e_stop="125587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCAGACTATTCCAGTCCTCTTATCTGTATGATCTTCCTGAATTCCGCCACTGTTTTATATACACATGTATCTTTCTTGTTTTCCTTTGAGAATCTTTAATCATGTTTGACTTTCACCAGGGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAGGTACATATATATTGGCATTGTTATGTTGCTCATCATCATTTTTATTATAAGTTAGAAGACATCTGACAGCCATCTTTTTTTTATCAGCACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAGGTACGTTCCTCATTTTCTAGGGTTCAAACTCTTATGTGCTAGTGTGGGTATTTCAGCTTTCAACCTTATTGATATTAAATCAGTGTGGTAAGTACGAGTTTCTGAGGTGATGACATTGAAGATCCCAAGCCGACTGCATAATTTGTACTGTAATTCATAACAAAAAGCAACTGGTGAAGTTAGGGTCTAGTTTAGAGATACAAGGCTTTTTGCTGTACTGCTTGATTTGCACAATCACAATTAGATTAAATTATTTTTTCAGGCTGAGTTTGTCTCATTTTTATCTCATTTTTACTTTTATCATTGTTTATTATTGTTTGTTAACAATAAGCTACCCTAGTATGTTGTTTATGGCATTTCGATTATCACATGATATTATTGCTGTTTTGGCAACTTTTGCGCTGTTTCTTGTTTCAATTTCTCTTCATTGTCTTCTTCTTTATACCGGGATTTGTTGCACTTGAGCTGAGGGTCTTTTGAAAACAGCTGCTCTACCTCCATGAGGTAATCTAAGGTTTGCATACATTCTACCCTCCTCAGACCTCATTTATGGGATAGGTATGTTGTTGTTGCTGAGTTTGATGTAGAGGAGCATAAGCATTGGCTTTATTCCTGTAAACCTAAATGTTACTATTTGGAATTGGTGCTGTGGTGCAAAGTATTTCCTTCTTTTAATCAGCATTAGCATGCCTTTTCACCAACTCCTTATGGGTGCAGGGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTT</genome_strand>
        <mrna_strand>AAAGGCAGACTATTCCAGTCCTCTTATCT..............................................................................................GGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCGAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAG.......................................................................................CACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708865" ref_strand="+" ref_description="SGN-E708865 [FA36DH11]">
      <seq>ccttctcgctaaaagtggggacttttctaaactgcgatgtgatgtactgatctcgacaccattgcgcctaaagtttgctatccaaaaaagaaagcttgatttaagtagggttgaatatcttgtcttagatgaatctgataagcttttcgagcctggcatgctagagcaggttgattttgtggtgaaggcgtgcacaaatccttcaattcttcggtcattgttcagtgctactttacccgatatagttgaagaccgagcacgtacaataatgcatgatgctgttcgagtaattattggtaggaaaaattcagcttctgaaacaatagagcaaaaactggtatatgttgggagtgaagaagggaagcttctggctcttcgtcaaagctttgcagagagtttaaacccaccagtgctagtattcgttcaaaacaaggagcgtgccaaggagctatatgacgagttaaaattggaagatattcgagcagatgttatccattcagacctttctcagatacagagagaaaatgctatcgataactttagagctggaaaaacatgggttttaattgccactgatgttgttgcccggggtatggatttcaaaggggtcaactgcgtgataaattatgatttcccagacgctgctgcagcatatattcacagaattggacgttctggcagagcaggaaggagtggacaggcgataacattttatactgaagcagatattccctttttgaggaacatcgcaaatgttattacgtcttctggtggtgaggttccggagtggatcatgtctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="124292" stop="127944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124588" g_stop="124695" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125413" g_stop="125607" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="303" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125792" g_stop="125882" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="394" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126931" g_stop="127053" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="517" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127232" g_stop="127382" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="668" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127510" g_stop="127644" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="803" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E708865" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124588" e_stop="124695"/>
          <exon e_start="125413" e_stop="125607"/>
          <exon e_start="125792" e_stop="125882"/>
          <exon e_start="126931" e_stop="127053"/>
          <exon e_start="127232" e_stop="127382"/>
          <exon e_start="127510" e_stop="127644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAGGTACGTTCCTCATTTTCTAGGGTTCAAACTCTTATGTGCTAGTGTGGGTATTTCAGCTTTCAACCTTATTGATATTAAATCAGTGTGGTAAGTACGAGTTTCTGAGGTGATGACATTGAAGATCCCAAGCCGACTGCATAATTTGTACTGTAATTCATAACAAAAAGCAACTGGTGAAGTTAGGGTCTAGTTTAGAGATACAAGGCTTTTTGCTGTACTGCTTGATTTGCACAATCACAATTAGATTAAATTATTTTTTCAGGCTGAGTTTGTCTCATTTTTATCTCATTTTTACTTTTATCATTGTTTATTATTGTTTGTTAACAATAAGCTACCCTAGTATGTTGTTTATGGCATTTCGATTATCACATGATATTATTGCTGTTTTGGCAACTTTTGCGCTGTTTCTTGTTTCAATTTCTCTTCATTGTCTTCTTCTTTATACCGGGATTTGTTGCACTTGAGCTGAGGGTCTTTTGAAAACAGCTGCTCTACCTCCATGAGGTAATCTAAGGTTTGCATACATTCTACCCTCCTCAGACCTCATTTATGGGATAGGTATGTTGTTGTTGCTGAGTTTGATGTAGAGGAGCATAAGCATTGGCTTTATTCCTGTAAACCTAAATGTTACTATTTGGAATTGGTGCTGTGGTGCAAAGTATTTCCTTCTTTTAATCAGCATTAGCATGCCTTTTCACCAACTCCTTATGGGTGCAGGGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAAGTAAGTACTAATAGGCCTTCGGTAGATGTATCTTAACTCTGCAGTGAAGTGAATGGTTATTTGGCTTCATACTCTCTTTTTTATGTTGTTTTGTTGGTGAAGGAGGAGAAGATCTTCCTTCCTCTCCTTTTTCTGACTCTCCATCTTGGTGAATGCTTACTTGGCTGCTTTTGCATTTCTGCAGAAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAGGTATGATCCTCATGTTCCTTAGTCATCAGAACTGATTGTATACCTCTTTGATGTGATTGGAGCCGCCTCTGGCATAATAATTGCTTGCACAACACCTTTACTTATCCCCCAAAAATCCTAGAACAACAATATCTACACAAGGGATTTCACATGGATACTCGTTACTACACAGTTGCTGTGAAACTGTCACTCTTGAAGCACTCTTGTCATATTTAGACGATGCCTTTTTGTAATTTCCGGCATTTTCTTTCTTTCCAGTCACTCAAATGTCCATCTTTGCTGTCAAATTGTTCACTGTTTTCTTTTTCTGCTCACGTGGTCTTTATATTCCCAGAAAATGGGCTCTAGTTGAATCCCCTTGAGCCATTGTTTTGCTGAGAGGGATTTCAACATCTAAGCCGTGCTTCTTGCTTTTTGTTCACTCTATATGAAACTCCTGTTCTCTTTGCTACTCTTACCATTCTGTAAGTTCATACTGTTACTTGAGCGGATCATCTTCTTCTTTTGATAGGCAAAGGGGTGTTACTACCTTCAAAAGCAACTAATCCCCGTTAAAAAATTATTTGCATGCTACAAAGTTTTTCCAGTTGTCTATACAATATGGTTTGCTATGTGTGCTCCAAAAACATAAAAAGAAAGCTTAATAACATAGACGACCCCTTAAACTTGCCAATAAATTTTGAGGGGCTGTCATTAAGCCTTAAAGAAAAGAGGTTTTTTTAGATTTATGTACAAACCGTCAATCTCAGCCCTCAAGGGGAAATTCCAATGGAATATTTCTATTTTACTTCCAAAGTAACATTCTTTTCATCAACACTGCCGGCACTTTCACCAACGCTCAATTGCATTTTCATGGCTCAGTGTGGTGTTTTTATTTGATACCATAGTGATTGTTCCGGAAATTTTACAATCGGTGCTAATTTAGTTAGATCTTCTTGCTATTTTCTTAAGCTGATCTATGATCAACATCTACAATGATTTGTTAACTTCGTAATGTATACCTAATTCATCTTTTTTTTGCATTGCCTGTCTGATTTATTATATGTAGAGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTGGTAAATATCCAACCCAAATTCGACTTTTACAATCTTATAGATAGTGATTCATAAGTCAATAGTCTTACAGTAAATCACAACAGTTTCAACTGTTCACTGAAAACTTACCGGTGATTCTTGTAAATAGGACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGA</genome_strand>
        <mrna_strand>CCTTCTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA........................................................................................................................................................................................AAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG...............................................................................................................................GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232762" ref_strand="+" ref_description="SGN-E232762 [cLED-8-I8]">
      <seq>tcagtgctactttacccgatatagttgaagaccgagcacgtacaataatgcatgatgctgttcgagtaattattggtaggaaaaattcagcttctgaaacaatagagcaaaaactggtatatgttgggagtgaagaagggaagcttctggctcttcgtcaaagctttgcagagagtttaaacccaccagtgctagtattcgttcaaaacaaggagcgtgccaaggagctatatgacgagttaaaattggaagatattcgagcagatgttatccattcagacctttctcagatacagagagaaaatgctatcgataactttagagctggaaaaacatgggttttaattgccactgatgttgttgcccggggtatggatttcaaaggggtcaactgcgtgataaattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="125226" stop="127645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125526" g_stop="125607" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125792" g_stop="125882" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="173" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126931" g_stop="127053" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="296" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127232" g_stop="127345" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="410" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E232762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125526" e_stop="125607"/>
          <exon e_start="125792" e_stop="125882"/>
          <exon e_start="126931" e_stop="127053"/>
          <exon e_start="127232" e_stop="127345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAAGTAAGTACTAATAGGCCTTCGGTAGATGTATCTTAACTCTGCAGTGAAGTGAATGGTTATTTGGCTTCATACTCTCTTTTTTATGTTGTTTTGTTGGTGAAGGAGGAGAAGATCTTCCTTCCTCTCCTTTTTCTGACTCTCCATCTTGGTGAATGCTTACTTGGCTGCTTTTGCATTTCTGCAGAAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAGGTATGATCCTCATGTTCCTTAGTCATCAGAACTGATTGTATACCTCTTTGATGTGATTGGAGCCGCCTCTGGCATAATAATTGCTTGCACAACACCTTTACTTATCCCCCAAAAATCCTAGAACAACAATATCTACACAAGGGATTTCACATGGATACTCGTTACTACACAGTTGCTGTGAAACTGTCACTCTTGAAGCACTCTTGTCATATTTAGACGATGCCTTTTTGTAATTTCCGGCATTTTCTTTCTTTCCAGTCACTCAAATGTCCATCTTTGCTGTCAAATTGTTCACTGTTTTCTTTTTCTGCTCACGTGGTCTTTATATTCCCAGAAAATGGGCTCTAGTTGAATCCCCTTGAGCCATTGTTTTGCTGAGAGGGATTTCAACATCTAAGCCGTGCTTCTTGCTTTTTGTTCACTCTATATGAAACTCCTGTTCTCTTTGCTACTCTTACCATTCTGTAAGTTCATACTGTTACTTGAGCGGATCATCTTCTTCTTTTGATAGGCAAAGGGGTGTTACTACCTTCAAAAGCAACTAATCCCCGTTAAAAAATTATTTGCATGCTACAAAGTTTTTCCAGTTGTCTATACAATATGGTTTGCTATGTGTGCTCCAAAAACATAAAAAGAAAGCTTAATAACATAGACGACCCCTTAAACTTGCCAATAAATTTTGAGGGGCTGTCATTAAGCCTTAAAGAAAAGAGGTTTTTTTAGATTTATGTACAAACCGTCAATCTCAGCCCTCAAGGGGAAATTCCAATGGAATATTTCTATTTTACTTCCAAAGTAACATTCTTTTCATCAACACTGCCGGCACTTTCACCAACGCTCAATTGCATTTTCATGGCTCAGTGTGGTGTTTTTATTTGATACCATAGTGATTGTTCCGGAAATTTTACAATCGGTGCTAATTTAGTTAGATCTTCTTGCTATTTTCTTAAGCTGATCTATGATCAACATCTACAATGATTTGTTAACTTCGTAATGTATACCTAATTCATCTTTTTTTTGCATTGCCTGTCTGATTTATTATATGTAGAGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGAT</genome_strand>
        <mrna_strand>TCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA........................................................................................................................................................................................AAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538113" ref_strand="+" ref_description="SGN-E538113 [TUS-57-B8](-)">
      <seq>caaagctttgcagagagttaaaacccaccagtgctagtattcgttcaaaacaaggagcgtgccaaggagctatatgacgagttaaaattggaagatattcgagcagatgttatccattcagacctttctcagatacagagagaaaatgctatcgataactttagagctggaaaaacatgggttttaattgccactgatgttgttgcccggggtatggatttcaaaggggtcaactgcgtgataaattatgatttcccagacgctgctgcagcatatattcacagaattggacgttctggcagagcaggaaggagtggacaggcgataacattttatactgaagcagatattccctttttgaggaacatcgcaaatgttattacgtcttctggtggtgaggttccggagtggatcatgtctctgaccaagaaaaagtggaggaaacacaggccgcgaagagaaaccatttcaactcagccagacatatgaaccatccctcatagttttgagcacaatatcaagttttttgaacttttctttttatacaacattaatgtatgattcaacttgtaatttatgttaagtatgagtttggaatgttcacttaaatgatagagaaatgaaatgttgtctttttttttgaaaagaaactctttttagtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="126621" stop="128182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126931" g_stop="127053" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="138" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127232" g_stop="127382" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="289" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127510" g_stop="127879" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="659" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="677"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E538113" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126931" e_stop="127053"/>
          <exon e_start="127232" e_stop="127382"/>
          <exon e_start="127510" e_stop="127879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTGGTAAATATCCAACCCAAATTCGACTTTTACAATCTTATAGATAGTGATTCATAAGTCAATAGTCTTACAGTAAATCACAACAGTTTCAACTGTTCACTGAAAACTTACCGGTGATTCTTGTAAATAGGACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGATAGAGAAATG-AATGTTGTCTTTTTTTTTTGAAAAGAAACTCTTTTTA</genome_strand>
        <mrna_strand>AGTTAAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG...............................................................................................................................GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGATAGAGAAATGAAATGTTGTC-TTTTTTTTTGAAAAGAAACTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716674" ref_strand="+" ref_description="SGN-E716674 [FB17CH07]">
      <seq>attcagacctttctcagatacagagagaaaatgctatcgataactttagagctggaaaaacatgggttttaattgccactgatgttgttgcccggggtatggatttcaaaggggtcaactgcgtgataaattatgatttcccagacgctgctgcagcatatattcacagaattggacgttctggcagagcaggaaggagtggacaggcgataacattttatactgaagcagatattccctttttgaggaacatcgcaaatgttattacgtcttctggtggtgaggttccggagtggatcatgtctctgaccaagaaaaagtggaggaaacacagaccgcgaagagaaaccatttcaactcagccagacatatgaaccatccctcatagttttgagcacaatatcaagttttttgaacttttctttttatacaacattaatgtatgattcaacttgtactttatgttaagtatgagtttggaatgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="126731" stop="128123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127031" g_stop="127053" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127232" g_stop="127382" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="174" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127510" g_stop="127832" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="497" r_length="323" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E716674" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127031" e_stop="127053"/>
          <exon e_start="127232" e_stop="127382"/>
          <exon e_start="127510" e_stop="127832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGACCTTTCTCAGATACAGGTAACTTTTTCATGACTTCCGTGTTTTCTACATCAAGAGAAGATCAATCTTCCTTCTGTTTTAGATAGAGCAATGTATGTCGATGTTGAAGTTCAGGGTTATGATTTTTTCATATTACATTGTATCCTGCTGTATAGAACACTTCTTCTGGTTTCTACTTATTTTAATTTCAACGCAGAGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTGGTAAATATCCAACCCAAATTCGACTTTTACAATCTTATAGATAGTGATTCATAAGTCAATAGTCTTACAGTAAATCACAACAGTTTCAACTGTTCACTGAAAACTTACCGGTGATTCTTGTAAATAGGACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGA</genome_strand>
        <mrna_strand>ATTCAGACCTTTCTCAGATACAG..................................................................................................................................................................................AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG...............................................................................................................................GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGACCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTACTTTATGTTAAGTATGAGTTTGGAATGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690977" ref_strand="+" ref_description="SGN-E690977 [LH_Ea04O15]">
      <seq>tgaggagcagacgaaacatgcttattcagttgcagttgccacagctgcagctgctgaagctgctgtcgcagctgcccacgctgctgcagaggttgtccggttgactacagtgaaccaattttctggaaaatcacaagaggaagtagctgcaattagagttcacacagcatttcgaggttatctggctaggagggcattgagggccttacgaggacttgtcagactgaaatcgcttgttgatggacctacggcccaaagacaaactgcaaatgctctaaaatgcatgcagacactatctcggatgcaatctcagattagttcacgaagaatcaggatgttggaggagaaccgaactctccagaggcagcttatgcaaaagcatgtgaaagaacttgagagtctgaggagaggagaagaatgggatgatagtctacaatccaaggagcgggttgaggctagtttgctcagcaaatatgaagctgcaattagacgagaaagagcgcttgcatattcatattctcaccagcaaacctggaagaaatcatcaagatctaccaatttgttgttcatggatccgaccaatccgcaatggggttggagctggctagagcggtggacaggtgctaggccttgggaaagtcaaagcatgtctgaaaaacaacttaaaaccgatcagatgtcagttagaagcgtgagctttgctggaggagaaattgcgaagtcatttgcccgtcatcagctgaattctgaactcccttcgtctccatccagccaaaaaacgagccatccatcaggctaccactctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="139874" stop="141918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140173" g_stop="140356" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140357" i_stop="140505" i_length="149">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140506" g_stop="140727" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="406" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140728" i_stop="140970" i_length="243">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140971" g_stop="141090" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="526" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141091" i_stop="141337" i_length="247">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141338" g_stop="141618" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="807" r_length="281" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E690977" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140173" e_stop="140356"/>
          <exon e_start="140506" e_stop="140727"/>
          <exon e_start="140971" e_stop="141090"/>
          <exon e_start="141338" e_stop="141618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAGCAGACGAAACATGCTTATTCAGTTGCAGTTGCCACAGCTGCAGCTGCTGAAGCTGCTGTCGCAGCTGCCCACGCTGCTGCAGAGGTTGTCCGGTTGACTACAGTGAACCAATTTTCTGGAAAATCACAAGAGGAAGTAGCTGCAATTAGAGTTCAGACTGCATTTCGAGGTTATCTGGTATGCGTTTTTTTAAATTCGAGTCCTGCAAATTGTTTTGACTGATATTCCCTGATATGGTAGCATTATGTTGTTTCGTTTTCGAAGAATGTAGAAGAATTGGTTGATGCTGACATAACCTTGCAAATATTTTGGTTTATCATTTGTAGGCTAGGAGGGCATTGAGGGCCTTACGAGGACTTGTCAGACTCAAATCGCTTGTTGATGGACCTACGGCCAAGAGACAAACAACAAACGCTCTAAAATGCATGCAGACACTATCGCGGATGCAATCTCAGATTAGTTCACGAAGGATCAGGATGTTGGAGGAGAACCGAACTCTCCAGAGGCAGCTTATGCAAAAGCATGTGAAAGAACTTGAGAGTCTGAGGGTAAGTTTATTTCTATTATTCTCTTCTTCTTGTTAAAGAGAAGATTCGGTGCTGGAATAGCCGAACATGATTCTTAAATATGCACACTCGAGATAAATCTACCCCTCACTAACCAGAATGACGTTCAGTCATAGTCCCTTTGTCTCAAATATTTTGTCTTACTTTCCTTTCTAGTCCGTTTATAAAAGGTCTCTTTCCTCTTTTTTATCTAACAGCACTCTTTGTTTTCTAATTTTTTGATAGAGAGGAGAAGAATGGGATGATAGTCTACAATCCAAGGAGCGGGTTGAGGCTAGCTTGCTCAGCAAATATGAAGCTGCAATTAGACGAGAAAGAGCGCTTGCATATTCATATTCTCACCAGGTATTCAACTAATATTTGTTTCGTAAATTATAAGGCCCCATTTAAACATGATCCCAAATCGTATGTCCAAAAATCATGATGAAAGATTGCTGATAGCTTGGCCTCCACTCATGTCGTCCCCTATTATGCATACACTAATGCACGACTCGAGAGATTGAATGATCGGTGTGTTTAGAGATCATAATTTTTCTCGAGCGAACAAGAACTTTATGAGTCATTGATTGTGTCAATTTTTAAAACTGAACAGCAAACCTGGAAGAAATCATCAAGATCTACCAATTTGTTGTTCATGGATCCGACCAATCCGCAATGGGGTTGGAGCTGGCTAGAGCGGTGGACGGGTGCTAGGCCTTGGGAAAGTCAAAGCATGTCTGAGAAACAACTTAAAACCGATCAGATGTCTGTTAGAAGCGTGAGCATTGCTGGAGGAGAAATTGCGAAGTCATTTGCCCGTCATCAGCTGAATTCTGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCC</genome_strand>
        <mrna_strand>TGAGGAGCAGACGAAACATGCTTATTCAGTTGCAGTTGCCACAGCTGCAGCTGCTGAAGCTGCTGTCGCAGCTGCCCACGCTGCTGCAGAGGTTGTCCGGTTGACTACAGTGAACCAATTTTCTGGAAAATCACAAGAGGAAGTAGCTGCAATTAGAGTTCACACAGCATTTCGAGGTTATCTG.....................................................................................................................................................GCTAGGAGGGCATTGAGGGCCTTACGAGGACTTGTCAGACTGAAATCGCTTGTTGATGGACCTACGGCCCAAAGACAAACTGCAAATGCTCTAAAATGCATGCAGACACTATCTCGGATGCAATCTCAGATTAGTTCACGAAGAATCAGGATGTTGGAGGAGAACCGAACTCTCCAGAGGCAGCTTATGCAAAAGCATGTGAAAGAACTTGAGAGTCTGAGG...................................................................................................................................................................................................................................................AGAGGAGAAGAATGGGATGATAGTCTACAATCCAAGGAGCGGGTTGAGGCTAGTTTGCTCAGCAAATATGAAGCTGCAATTAGACGAGAAAGAGCGCTTGCATATTCATATTCTCACCAG.......................................................................................................................................................................................................................................................CAAACCTGGAAGAAATCATCAAGATCTACCAATTTGTTGTTCATGGATCCGACCAATCCGCAATGGGGTTGGAGCTGGCTAGAGCGGTGGACAGGTGCTAGGCCTTGGGAAAGTCAAAGCATGTCTGAAAAACAACTTAAAACCGATCAGATGTCAGTTAGAAGCGTGAGCTTTGCTGGAGGAGAAATTGCGAAGTCATTTGCCCGTCATCAGCTGAATTCTGAACTCCCTTCGTCTCCATCCAGCCAAAAAACGAGCCATCCATCAGGCTACCACTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270100" ref_strand="+" ref_description="SGN-E270100 [cLEM-7-H15]">
      <seq>gaggttgtccggttgactacagtgaaccaattttctggaaaatcacaagaggaagtagctgcaattagagttcagactgcatttcgaggttatctggctaggagggcattgagggccttacgaggacttgtcagactcaaatcgcttgttgatggacctacggccaagagacaaacaacaaacgctctaaaatgcatgcagacactatcgcggatgcaatctcagattagttcacgaaggatcaggatgttggaggagaaccgaactctccagaggcagcttatgcaaaagcatgtgaaagaacttgagagtctgaggagaggagaagaatgggatgatagtctacaatccaaggagcgggttgaggctagcttgctcagcaaatatgaagctgcaattagacgagaaagagcgcttgcatattcatattctcaccagcaaacctggaagaaatcatcaagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="139961" stop="141664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140261" g_stop="140356" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140357" i_stop="140505" i_length="149">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140506" g_stop="140727" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="318" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140728" i_stop="140970" i_length="243">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140971" g_stop="141090" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="438" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141091" i_stop="141337" i_length="247">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141338" g_stop="141364" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="465" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E270100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140261" e_stop="140356"/>
          <exon e_start="140506" e_stop="140727"/>
          <exon e_start="140971" e_stop="141090"/>
          <exon e_start="141338" e_stop="141364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTGTCCGGTTGACTACAGTGAACCAATTTTCTGGAAAATCACAAGAGGAAGTAGCTGCAATTAGAGTTCAGACTGCATTTCGAGGTTATCTGGTATGCGTTTTTTTAAATTCGAGTCCTGCAAATTGTTTTGACTGATATTCCCTGATATGGTAGCATTATGTTGTTTCGTTTTCGAAGAATGTAGAAGAATTGGTTGATGCTGACATAACCTTGCAAATATTTTGGTTTATCATTTGTAGGCTAGGAGGGCATTGAGGGCCTTACGAGGACTTGTCAGACTCAAATCGCTTGTTGATGGACCTACGGCCAAGAGACAAACAACAAACGCTCTAAAATGCATGCAGACACTATCGCGGATGCAATCTCAGATTAGTTCACGAAGGATCAGGATGTTGGAGGAGAACCGAACTCTCCAGAGGCAGCTTATGCAAAAGCATGTGAAAGAACTTGAGAGTCTGAGGGTAAGTTTATTTCTATTATTCTCTTCTTCTTGTTAAAGAGAAGATTCGGTGCTGGAATAGCCGAACATGATTCTTAAATATGCACACTCGAGATAAATCTACCCCTCACTAACCAGAATGACGTTCAGTCATAGTCCCTTTGTCTCAAATATTTTGTCTTACTTTCCTTTCTAGTCCGTTTATAAAAGGTCTCTTTCCTCTTTTTTATCTAACAGCACTCTTTGTTTTCTAATTTTTTGATAGAGAGGAGAAGAATGGGATGATAGTCTACAATCCAAGGAGCGGGTTGAGGCTAGCTTGCTCAGCAAATATGAAGCTGCAATTAGACGAGAAAGAGCGCTTGCATATTCATATTCTCACCAGGTATTCAACTAATATTTGTTTCGTAAATTATAAGGCCCCATTTAAACATGATCCCAAATCGTATGTCCAAAAATCATGATGAAAGATTGCTGATAGCTTGGCCTCCACTCATGTCGTCCCCTATTATGCATACACTAATGCACGACTCGAGAGATTGAATGATCGGTGTGTTTAGAGATCATAATTTTTCTCGAGCGAACAAGAACTTTATGAGTCATTGATTGTGTCAATTTTTAAAACTGAACAGCAAACCTGGAAGAAATCATCAAGATCT</genome_strand>
        <mrna_strand>GAGGTTGTCCGGTTGACTACAGTGAACCAATTTTCTGGAAAATCACAAGAGGAAGTAGCTGCAATTAGAGTTCAGACTGCATTTCGAGGTTATCTG.....................................................................................................................................................GCTAGGAGGGCATTGAGGGCCTTACGAGGACTTGTCAGACTCAAATCGCTTGTTGATGGACCTACGGCCAAGAGACAAACAACAAACGCTCTAAAATGCATGCAGACACTATCGCGGATGCAATCTCAGATTAGTTCACGAAGGATCAGGATGTTGGAGGAGAACCGAACTCTCCAGAGGCAGCTTATGCAAAAGCATGTGAAAGAACTTGAGAGTCTGAGG...................................................................................................................................................................................................................................................AGAGGAGAAGAATGGGATGATAGTCTACAATCCAAGGAGCGGGTTGAGGCTAGCTTGCTCAGCAAATATGAAGCTGCAATTAGACGAGAAAGAGCGCTTGCATATTCATATTCTCACCAG.......................................................................................................................................................................................................................................................CAAACCTGGAAGAAATCATCAAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253264" ref_strand="+" ref_description="SGN-E253264 [cLEG-26-A4]">
      <seq>ctgaactcccttcgtctccatccagacaaaaaccgagccatccatcacgctaccactctccaacaaccccttccaagccaaccacttcagtagcagcagccagaaaactgaaaccagcaagcccgagaattagtgcaatgaaccaagatgatgataaccgaagcatgcttagcgtgcagtcagaacggaacaggaggcatagcatagcaggatcatctataagaaacgacgagagcctggcaagctcgccttcagtcccaagttacatggcgtccactcagtctgcaaaggccaaaacacggttgcaaaatccattaggcatggaaaatggcaaaccagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="141258" stop="142201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141558" g_stop="141901" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E253264" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141558" e_stop="141901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAA</genome_strand>
        <mrna_strand>CTGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAAACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251376" ref_strand="+" ref_description="SGN-E251376 [cLEG-23-J8]">
      <seq>tgaactcccttcgtctccatccagacaaaaaccgagccatccatcacgctaccactctccaacaaccccttccaagccaaccacttcagtagcagcagccagaaaactgaaaccagcaagcccgagaattagtgcaatgaaccaagatgatgataaccgaagcatgcttagcgtgcagtcagaacggaacaggaggcatagcatagcaggatcatctataagagacgacgagagcctggcaagctcgccttcagtcccaagttacatggcgtccactcagtctgcaaaggccaaaacacggttgcaaaatccattaggcatggaaaatggcaaaccagaaaaaggatcagcagggtctgtgaagaagcggctctcttatccaccgtcacctgccagaacaaggcggcattcaggcccaccaaagtttgacaacacctctttgaacacctccatcgccgaggatcatgtgaatggagtcgtcaactaattattcttgtcacaaacaataagcaatcctgccacccttctggcttataggtacgcgtttaaaatgcccctctctgcgcgatatcaactactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="141259" stop="142442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141559" g_stop="142142" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E251376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141559" e_stop="142142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACACCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCGTTTAAAATGCCCCTCTCTGCGCGATATCAACTACTTTGAT</genome_strand>
        <mrna_strand>TGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACACCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCGTTTAAAATGCCCCTCTCTGCGCGATATCAACTACTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375210" ref_strand="+" ref_description="SGN-E375210 [TUS-34-P21]">
      <seq>tgaactcccttcgtctccatccagacaaaaaccgagccatccatcacgctaccactctccaacaaccccttccaagccaaccacttcagtagcagcagccagaaaactgaaaccagcaagcccgagaattagtgcaatgaaccaagatgatgataaccgaagcatgcttagcgtgcagtcagaacggaacaggaggcatagcatagcaggatcatctataagagacgacgagagcctggcaagctcgccttcagtcccaagttacatggcgtccactcagtctgcaaaggccaaaacacggttgcaaaatccattaggcatggaaaatggcaaaccaganaaaggatcagcagggtctgtgaagaagcggctctcttatccaccgtcacctgccagaacaaggcggcattcaggcccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="141259" stop="142279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141559" g_stop="141979" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E375210" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141559" e_stop="141979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCA</genome_strand>
        <mrna_strand>TGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGANAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694817" ref_strand="+" ref_description="SGN-E694817 [LH_Ea04O15](-)">
      <seq>gcagccagaaaattgaaaccagcaagcccgagaattagtgcaatgaaccaagatgatgataaccgaagcatgcttagcgtgcagtcagaacggaacaggaggcatagcatagcaggatcatctataagagacgacgagagcctggcaagctcgccttcagtcccaagttacatggcgtccactcagtctgcgaaggccaaaacacggttacaaagtccattaggcatggaaaatggcacaccagaaaaaggatcagcagggtctgtgaagaagcggctcttttatccaccgtcacctgccagaacaaggcggcattcaggcccaccaaagtttgacaacacctctttgaacccctccatcgccgaggatcatgtgaatggagtcgtcaactaattattcttgtcacaaacaataagcaatcctgccacccttctggcttataggtacgcatataaaatgccactctttgcgcgatatcaactactttgatttgctgcacttgagttgaatgtccttcagaaacagcctctccacttgtgggatttcactaggtatgttgttgtccgggctttcccctgaatgactcttgcttttcgcgttactttctctcgcgcttgttgatgacaacaaaagtgtcaatacttgtgaatcattttagataacattttcttgattgtgaaagcatatatgattgtattgtttttagtactatgtcccccaaaagggtgaaatgaaaaaaatgttcctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="141353" stop="142702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141653" g_stop="142400" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="750" polyA_stop="763"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E694817" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141653" e_stop="142400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACACCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCGTTTAAAATGCCCCTCTCTGCGCGATATCAACTACTTTGATTTGCTGCACTTGAGTCGAATGTCCTTCAGAAACAGTCTCTCCACTTGTGGGATTTCACTAGGTATGTTGTTGTGCGGGCTTTGCCCTGAATGACTCTTGCTTTTCGCGTTACTTTCTCTCGTGCTTGTTGATGACAACAAAAGTGTCAATACTTGTGAATCATTTTAGATAACATTTTCTTGATTGTGATAACATATATGATTGTATTATTTTTAGTACTATGTACACCATAATAGTGAAATGAAAAAAAATGTTCCT</genome_strand>
        <mrna_strand>GCAGCCAGAAAATTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCGAAGGCCAAAACACGGTTACAAAGTCCATTAGGCATGGAAAATGGCACACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTTTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACCCCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCATATAAAATGCCACTCTTTGCGCGATATCAACTACTTTGATTTGCTGCACTTGAGTTGAATGTCCTTCAGAAACAGCCTCTCCACTTGTGGGATTTCACTAGGTATGTTGTTGTCCGGGCTTTCCCCTGAATGACTCTTGCTTTTCGCGTTACTTTCTCTCGCGCTTGTTGATGACAACAAAAGTGTCAATACTTGTGAATCATTTTAGATAACATTTTCTTGATTGTGAAAGCATATATGATTGTATTGTTTTTAGTACTATGTCCCCCAAAAGGGTGAAATG-AAAAAAATGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375209" ref_strand="+" ref_description="SGN-E375209 [TUS-34-P21](-)">
      <seq>gaaaccagcaagcccgagaattagtgcaatgaaccaagatgatgataaccgaagcatgcttagcgtgcagtcagaacggaacaggaggcatagcatagcaggatcatctataagagacgacgagagcctggcaagctcgccttcagtcccaagttacatggcgtccactcagtctgcaaaggccaaaacacggttgcaaaatccattaggcatggaaaatggcaaaccagaaaaaggatcagcagggtctgtgaagaagcggctctcttatccaccgtcacctgccagaacaaggcggcattcaggcccaccaaagtttgacaacacctctttgaacacctccatcgccgaggatcatgtgaatggagtcgtcaactaattattcttgtcacaaacaataagcaatcctgccacccttctggcttataggtacgcgtttaaaatgcccctctctgcgcgatatcaactactttgatttgctgcacttgagtcgaatgtccttcagaaacagtctctccacttgtgggatttcactaggtatgttgttgtgcgggctttgccctgaatgactcttgcttttcgcgttactttctctcgtgcttgttgatgacaacaaaagtgtcaatacttgtgaatcattttagataacattttcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="141367" stop="142625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141667" g_stop="142333" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E375209" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141667" e_stop="142333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACACCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCGTTTAAAATGCCCCTCTCTGCGCGATATCAACTACTTTGATTTGCTGCACTTGAGTCGAATGTCCTTCAGAAACAGTCTCTCCACTTGTGGGATTTCACTAGGTATGTTGTTGTGCGGGCTTTGCCCTGAATGACTCTTGCTTTTCGCGTTACTTTCTCTCGTGCTTGTTGATGACAACAAAAGTGTCAATACTTGTGAATCATTTTAGATAACATTTTCTTGATTGTGATA</genome_strand>
        <mrna_strand>GAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACACCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCGTTTAAAATGCCCCTCTCTGCGCGATATCAACTACTTTGATTTGCTGCACTTGAGTCGAATGTCCTTCAGAAACAGTCTCTCCACTTGTGGGATTTCACTAGGTATGTTGTTGTGCGGGCTTTGCCCTGAATGACTCTTGCTTTTCGCGTTACTTTCTCTCGTGCTTGTTGATGACAACAAAAGTGTCAATACTTGTGAATCATTTTAGATAACATTTTCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713258" ref_strand="+" ref_description="SGN-E713258 [FB08AF04]">
      <seq>catctcttacttcgttatattcaagctcttaggtgaagatcggaaaaaatggtcgcaccattagtagcaggaatggctatagccgctgctgcatatgcttcaaggtatggaatccaggcatggcaagcattcaaggccagacctcccactgtgagaatgcgcaagttttatgaaggaggttttcagcctaaaatgaacagaagggaagcagctctgattcttggagtcagggaaaacactgaagcaaataaagtgagggaagcacataggaaggtgatggtagctaaccatccagatgcaggaggtagtcactaccttgcttctaaaataaacgaggcgaaagacactttgcttggacagacgaagaacaatggatccgcgttctaggctacacgaaatttttgctggtgaaaggctctgcttacacaccatcctctccagacgttatgtcgttatcgtcatgtggcatttcactctatttgtataggtaatggggctgaggaattccagaaatattactaatagaaccagaaaatgtgtatacttccaaaatttgaatcacgtggctttgaagaccnnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="145789" stop="149269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146088" g_stop="146138" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146139" i_stop="147685" i_length="1547">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147686" g_stop="147864" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="230" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147865" i_stop="148455" i_length="591">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148456" g_stop="148632" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="407" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148633" i_stop="148799" i_length="167">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148800" g_stop="148977" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="585" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E713258" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146088" e_stop="146138"/>
          <exon e_start="147686" e_stop="147864"/>
          <exon e_start="148456" e_stop="148632"/>
          <exon e_start="148800" e_stop="148977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCTTACTTCGTTATATTCAAGCTCTTAGGTGAAGATCGGAAAAAATGGTGAGAACTCTTTTTCTTCAAATTATTTTTAGGACTATTTTTATGGAAAAAGAATCATAAATTTTACTTCTTTAAACTCTTATTAATTGTGAAAAAAAACTTAGCAATTGTCTGTTTTTGCTTACCTTCAATAGTTGATACTGGGAATTTATGAATCTTTAATCTTTTGTGTTTTGTTCTGTGCTTTTTGTACTTTTGGGGGTTGTTATATGCTTGTTTTGATCATAAAGATTTGAACTTTTTCTTCTTTTATTTGAAGAAAATTTATCTGAGACCAACCCTTATGAGTTATGACCAACTGCAGCCTTTGTTACTCGAGGATAATCGGCCTGCCCCTAGGCTCAATACGTGATTTTGATATGTTTTACTTGAGTCGAGGGTCTTTTGGAAACAACCTCGGTAGTGGTAACGTCTGTGTTCACTCTAACCTTCTCACTAGGTATGTTATTATTGTTGATGTTGTTGTTTACTTGAGTTGAGTGTCTATTGAAATTAGCTTCTCTAATTTCACAAATTTCACAAGGTAGGGATAAGGTTGTGTACAAACCATTCTTCCCGAACTTTACTTTCGGGACACATTGGGTATATATTTTGTTTTTTTTGTTGTTAGTTATAGGGCTAGAACTTGGGATCTAAGCCGCAAATCCCTCAACTTTTGCCAATTGAGCTACGCCCTCCCTGGGGCGTAAAGTTTCGAACTTTTGATTCTTTGATTTGAGATAGTTGCTTTAAATGGTTATGCAATGAACTTGAGTTGAGAAATTGCTTTGTAAGCATATTTATTTCATGTCCTTGTCTTCTTTGCTATTTTCTATTTAATGTATCATTTGCTGTCATCAAGTCTCTTTGTAAAAGCCTTTGGTTTCTTCTATTATGTGAGTATATTGGGTTTTTATTTATCTTTAATCTTCTGTGTTTGTTGTCTATGCACTTCATTCTTATGGGAACCTTTATCCTTCTAGTTATGGTAATAAAGCTTCGAAAATGCTTGTATTTGAAGCCAAGGGTTCTTATCAAAAACAACCTTTCTACCTTACCCACGTTAGGTAAGGTTTGCATATACACCACTTTCTCCGGACTCCATTTATGATGTCACGGTTAACCTTTTGAATCTAGAAAGTGGCAATGTAGGGATTGCTCTAAACCATTTAGAACAAACCGGCTTCTTGAGCTTCGTGGATAAGAGATAAAGATAGGGATCCATCTCGATTTTGATTCACTATTTCCTTCTTCTTTCTTTTCTTGATTCTAAGTGATGGCTTTTTTGAGGGAATCCCCATCTGCAACCGAATTAGCTAATCTAGTAGAGAGGGTCTTGTACCGATGCAGGATAAAAGGCATCTCCATCTGATTGATTGCCTTTTTGTACATTCTTGAGTCACTAGTTCAAATGGAAATATTATTGGAAAAAAAGGTTTTGAGAGAGCTCTATACATTAGGCACCGTACCTCGCCTCAGATAAAAGCCCCATAGTCTGGTATTTCAGTGGAGAAAGGTATATGTCTTGTTTACACTCGAAATTTACATGATTCAAAATTGTGCTTCAGGTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAGGTCTGTTCTGTCATTCATGTTAACGCGTTGCTGCAATTCCTATATGAGACGTTTTTTAAGTACTACACAAGTTAAATCTATCTCCTTGAATCAAAGGTCTATAAGAAACACTCTTCATAACCTCCCTAGACCCCACGTCTGGGAATCATGTTGGATATGTTGTTGCTACATAGGTTAAGTCGTTATATGAATACAATCTCTTCTCTCTACATTCTGAAAAATCCTTCGTTCTACATTGTGAGCATATTGGTCTGCTCGTAGTACTTCACTATCAAATCCACTTTCTCTGAAGGTACAGTTAGTACTATTCGTCTCAATTGTATGGAGGTAAACTACATAACACTATCCTTGAACATGTCAGGTTTACACCACATTTTTGGGGTTTTTGACTTTCGTTCTAACGCTATTATTTGTTCATGCTTGTATAGTGTAATGATATCTGAGTTCTTTGAGTTTTGGTCTAACGCTATTATTTGTTTGTGTTTATATAGTATAATGATATTCGATATATAAGAACAGTAGCACGAGTAGTCTTTTCTCCTCTGTTTTCCTTTCTGGATTTTGTTATATTGACATCAATATCTTCAACAGGGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACACCATCCTCTCCAGACGTTATGTCGTTATCGTCATGTGGCATTTCACTCTATTTGTATAGGTAATGGGGCTGAGGAATTCCAGAAATATTACTAATAGAACCAGAAAATGTGTATACTTCCAAAATTTGAATCACGTGGCTTTGAAGACCAGTTGCCA</genome_strand>
        <mrna_strand>CATCTCTTACTTCGTTATATTCAAGCTCTTAGGTGAAGATCGGAAAAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTG.......................................................................................................................................................................GTGAAAGGCTCTGCTTACACACCATCCTCTCCAGACGTTATGTCGTTATCGTCATGTGGCATTTCACTCTATTTGTATAGGTAATGGGGCTGAGGAATTCCAGAAATATTACTAATAGAACCAGAAAATGTGTATACTTCCAAAATTTGAATCACGTGGCTTTGAAGACCNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290327" ref_strand="+" ref_description="SGN-E290327 [cLES-20-I1]">
      <seq>ttcgttatattcaagctcttaggtgaagatcggaaaaaatggtcgcaccattagtagcaggaatggctatagccgctgctgcatatgcttcaaggtatggaatccaggcatggcaagcattcaaggccagacctcccactgtgagaatgcgcaagttttatgaaggaggatttcagcctaaaatgaacagaagggaagcagctctgattcttggagtcagggaaaacactgaagcaaataaagtgagggaagcacataggaaggtgatggtagctaaccatccagatgcacgaggtagtcactaccttgcttctaaaataaacgaggcgaaagacactttgcttggacagacgaagaacaatggatccgcgttctaggctacacgaaatttttgctggtacttagacatacccaaatccaagagtctttagtcaaaaaattagacactagaacattgagaatacatcataagatgtacaagttacaactagtttgttttaattctaagcaagcttgagaagtcgattatatgaattctcactattcatgtggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="145798" stop="149090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146098" g_stop="146138" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146139" i_stop="147685" i_length="1547">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147686" g_stop="147864" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="220" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147865" i_stop="148455" i_length="591">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148456" g_stop="148790" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="555" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E290327" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146098" e_stop="146138"/>
          <exon e_start="147686" e_stop="147864"/>
          <exon e_start="148456" e_stop="148790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTATATTCAAGCTCTTAGGTGAAGATCGGAAAAAATGGTGAGAACTCTTTTTCTTCAAATTATTTTTAGGACTATTTTTATGGAAAAAGAATCATAAATTTTACTTCTTTAAACTCTTATTAATTGTGAAAAAAAACTTAGCAATTGTCTGTTTTTGCTTACCTTCAATAGTTGATACTGGGAATTTATGAATCTTTAATCTTTTGTGTTTTGTTCTGTGCTTTTTGTACTTTTGGGGGTTGTTATATGCTTGTTTTGATCATAAAGATTTGAACTTTTTCTTCTTTTATTTGAAGAAAATTTATCTGAGACCAACCCTTATGAGTTATGACCAACTGCAGCCTTTGTTACTCGAGGATAATCGGCCTGCCCCTAGGCTCAATACGTGATTTTGATATGTTTTACTTGAGTCGAGGGTCTTTTGGAAACAACCTCGGTAGTGGTAACGTCTGTGTTCACTCTAACCTTCTCACTAGGTATGTTATTATTGTTGATGTTGTTGTTTACTTGAGTTGAGTGTCTATTGAAATTAGCTTCTCTAATTTCACAAATTTCACAAGGTAGGGATAAGGTTGTGTACAAACCATTCTTCCCGAACTTTACTTTCGGGACACATTGGGTATATATTTTGTTTTTTTTGTTGTTAGTTATAGGGCTAGAACTTGGGATCTAAGCCGCAAATCCCTCAACTTTTGCCAATTGAGCTACGCCCTCCCTGGGGCGTAAAGTTTCGAACTTTTGATTCTTTGATTTGAGATAGTTGCTTTAAATGGTTATGCAATGAACTTGAGTTGAGAAATTGCTTTGTAAGCATATTTATTTCATGTCCTTGTCTTCTTTGCTATTTTCTATTTAATGTATCATTTGCTGTCATCAAGTCTCTTTGTAAAAGCCTTTGGTTTCTTCTATTATGTGAGTATATTGGGTTTTTATTTATCTTTAATCTTCTGTGTTTGTTGTCTATGCACTTCATTCTTATGGGAACCTTTATCCTTCTAGTTATGGTAATAAAGCTTCGAAAATGCTTGTATTTGAAGCCAAGGGTTCTTATCAAAAACAACCTTTCTACCTTACCCACGTTAGGTAAGGTTTGCATATACACCACTTTCTCCGGACTCCATTTATGATGTCACGGTTAACCTTTTGAATCTAGAAAGTGGCAATGTAGGGATTGCTCTAAACCATTTAGAACAAACCGGCTTCTTGAGCTTCGTGGATAAGAGATAAAGATAGGGATCCATCTCGATTTTGATTCACTATTTCCTTCTTCTTTCTTTTCTTGATTCTAAGTGATGGCTTTTTTGAGGGAATCCCCATCTGCAACCGAATTAGCTAATCTAGTAGAGAGGGTCTTGTACCGATGCAGGATAAAAGGCATCTCCATCTGATTGATTGCCTTTTTGTACATTCTTGAGTCACTAGTTCAAATGGAAATATTATTGGAAAAAAAGGTTTTGAGAGAGCTCTATACATTAGGCACCGTACCTCGCCTCAGATAAAAGCCCCATAGTCTGGTATTTCAGTGGAGAAAGGTATATGTCTTGTTTACACTCGAAATTTACATGATTCAAAATTGTGCTTCAGGTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAGGTCTGTTCTGTCATTCATGTTAACGCGTTGCTGCAATTCCTATATGAGACGTTTTTTAAGTACTACACAAGTTAAATCTATCTCCTTGAATCAAAGGTCTATAAGAAACACTCTTCATAACCTCCCTAGACCCCACGTCTGGGAATCATGTTGGATATGTTGTTGCTACATAGGTTAAGTCGTTATATGAATACAATCTCTTCTCTCTACATTCTGAAAAATCCTTCGTTCTACATTGTGAGCATATTGGTCTGCTCGTAGTACTTCACTATCAAATCCACTTTCTCTGAAGGTACAGTTAGTACTATTCGTCTCAATTGTATGGAGGTAAACTACATAACACTATCCTTGAACATGTCAGGTTTACACCACATTTTTGGGGTTTTTGACTTTCGTTCTAACGCTATTATTTGTTCATGCTTGTATAGTGTAATGATATCTGAGTTCTTTGAGTTTTGGTCTAACGCTATTATTTGTTTGTGTTTATATAGTATAATGATATTCGATATATAAGAACAGTAGCACGAGTAGTCTTTTCTCCTCTGTTTTCCTTTCTGGATTTTGTTATATTGACATCAATATCTTCAACAGGGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCAT</genome_strand>
        <mrna_strand>TTCGTTATATTCAAGCTCTTAGGTGAAGATCGGAAAAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGATTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCACGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355222" ref_strand="+" ref_description="SGN-E355222 [cTOS-18-G19]">
      <seq>gcaagcattcaaggccagacctcccactgtgagaatgcgcaagttttatgaaggaggttttcagcctaaaatgaacagaagggaagcagctctgattcttggagtcagggaaaacactgaagcaaataaagtgagggaagcacataggaaggtgatggtagctaaccatccagatgcaggaggtagtcactaccttgcttctaaaataaacgaggcgaaagacactttgcttggacagacgaagaacaatggatccgcgttctaggctacacgaaatttttgctggtacttagacatacccaaatccaagagtctttagtcaaaaaattagacactagaacattgagaatacatcataagatgtacaagttacaactagtttgttttaattctaagcaagcttgagaagtcgattatatgaattctcactattcatgtggcattttgggtaggtgaaaggctctgcttacacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0067J16-6MpZD/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0067J16.1" temp_strand="+" temp_description="C09HBa0067J16.1  AC232935.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0067J16 upload_account_name:spain (1 - 151319)">
        <position start="147457" stop="149120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147757" g_stop="147864" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147865" i_stop="148455" i_length="591">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148456" g_stop="148820" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="473" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="484"/>
      <MATCH_line gen_id="C09HBa0067J16.1" gen_strand="+" ref_id="SGN-E355222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0067J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147757" e_stop="147864"/>
          <exon e_start="148456" e_stop="148820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAGGTCTGTTCTGTCATTCATGTTAACGCGTTGCTGCAATTCCTATATGAGACGTTTTTTAAGTACTACACAAGTTAAATCTATCTCCTTGAATCAAAGGTCTATAAGAAACACTCTTCATAACCTCCCTAGACCCCACGTCTGGGAATCATGTTGGATATGTTGTTGCTACATAGGTTAAGTCGTTATATGAATACAATCTCTTCTCTCTACATTCTGAAAAATCCTTCGTTCTACATTGTGAGCATATTGGTCTGCTCGTAGTACTTCACTATCAAATCCACTTTCTCTGAAGGTACAGTTAGTACTATTCGTCTCAATTGTATGGAGGTAAACTACATAACACTATCCTTGAACATGTCAGGTTTACACCACATTTTTGGGGTTTTTGACTTTCGTTCTAACGCTATTATTTGTTCATGCTTGTATAGTGTAATGATATCTGAGTTCTTTGAGTTTTGGTCTAACGCTATTATTTGTTTGTGTTTATATAGTATAATGATATTCGATATATAAGAACAGTAGCACGAGTAGTCTTTTCTCCTCTGTTTTCCTTTCTGGATTTTGTTATATTGACATCAATATCTTCAACAGGGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACA</genome_strand>
        <mrna_strand>GCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>112</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5863" PGL_stop="22160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6024" e_stop="6049"/>
            <exon e_start="7998" e_stop="8097"/>
            <exon e_start="17291" e_stop="17430"/>
            <exon e_start="18111" e_stop="18848"/>
            <exon e_start="18921" e_stop="19327"/>
            <exon e_start="20029" e_stop="20349"/>
            <exon e_start="20707" e_stop="20979"/>
            <exon e_start="22144" e_stop="22160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.988" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6024" e_stop="6049" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7998" e_stop="8097" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.914">
            <gDNA_intron_boundary i_start="8098" i_stop="17290" i_length="9193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17291" e_stop="17430" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="17431" i_stop="18110" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18111" e_stop="18848" e_length="738"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18921" e_stop="19327" e_length="407"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.926">
            <gDNA_intron_boundary i_start="19328" i_stop="20028" i_length="701"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="20029" e_stop="20349" e_length="321"/>
          </exon>
          <intron i_serial="6" don_prob="0.860" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20707" e_stop="20979" e_length="273"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20980" i_stop="22143" i_length="1164"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="22144" e_stop="22160" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6024" stop="6049"/>
              <exon start="7998" stop="8097"/>
              <exon start="17291" stop="17430"/>
              <exon start="18111" stop="18248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18210" stop="18714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18250" stop="18848"/>
              <exon start="18921" stop="18965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18250" stop="18848"/>
              <exon start="18921" stop="18960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18435" stop="18742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18714" stop="18848"/>
              <exon start="18921" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18739" stop="18848"/>
              <exon start="18921" stop="19156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19041" stop="19327"/>
              <exon start="20029" stop="20349"/>
              <exon start="20707" stop="20936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20232" stop="20349"/>
              <exon start="20707" stop="20979"/>
              <exon start="22144" stop="22160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20293" stop="20349"/>
              <exon start="20707" stop="20979"/>
              <exon start="22144" stop="22160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTCACCGGCAAAACTTCTCCG : TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT : ATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACG : CAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG : ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAG : GGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAGGTAAGTTCTGAAACTCTACTTTGTTTTGCTTTCTGTTTTCATCTTGCAGCCATCTGCTCAGCTTTGATACTTTGACATGAACAGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG : GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTC : AAAAAAAAAAAAAAGAA</gDNA_template>
            <first_frame> V  S  S  P  A  K  L  L  R :   I  S  L  S  R  R  V  K  D  L  A  R  T  *  R  H  N  T  F  P  L  W  L  T  R  F  E  *  D  S  L  V  H  :  I  S  F  R  G  E  I  N  L  L  L  T  F  T  Y  N  G  A  Q  K  F  I  Q  H  A  S  N  I  W  D  G  R  *  S  E  M  E  H  S  R  A  G  T  F  A  L  R :   K  D  W  C  S  G  K  Q  *  Y  C  L  S  S  G  *  Y  V  N  *  R  G  T  P  F  F  S  G  A  W  L  *  A  K  W  I  F  F  L  E  S  K  Y  G  N  S  T  L  S  A  T  G  S  R  S  S  S  *  P  F  S  T  F  R  Y  W  R  L  S  Y  D  P  *  E  L  S  T  S  S  I  F  I  S  P  W  W  P  D  I  S  W  G  G  W  W  P  C  *  P  H  N  G  *  W  E  R  A  V  Q  T  K  E  S  W  Y  T  C  R  W  R  K  W  *  Y  K  Q  I  L  *  C  W  Q  F  I  *  S  P  F  *  I  L  A  G  E  T  K  S  R  P  P  L  H  N  L  G  F  T  S  *  L  P  R  *  *  S  V  Y  W  R  *  G  F  S  E  E  C  K  K  Q  S  C  I  *  P  A  K  *  C  R  K  G  S  Y  N  K  Y  S  F  T  S  L  *  Q  Q  *  N  I  H  *  L  L  *  F  S  E  L  S  S  S  K  F  E  F  F  S  K  G  M  E  P  Y  C  H  A  P  C  S  C  P  W  E  E  L  R  S  * :   C  K  L  L  L  L  *  Y  E  P  L  *  Y  G  Y  R  Q  Y  L  Y  L  S  G  D  G  E  L  P  Q  *  F  H  L  Q  Q  N  F  P  S  S  A  F  T  W  Q  L  A  I  F  K  G  S  Q  K  *  L  *  S  K  I  F  P  Y  F  *  D  F  F  K  L  F  A  S  W  A  C  W  D  F  R  *  R  I  T  V  V  C  *  R  L  L  L  K  T  F  T  T  I  V  Y  S  R  T  A  *  *  *  P  K  W  E  N  *  G  I  Q  *  *  V  Q  I  V  G  W  *  G  R  F  P  *  A  S  C  I  *   : G  R  D  Y  S  R  P  L  Y  L  L  W  V  Q  K  H  V  *  P  A  *  G  H  E  T  *  H  *  R  H  G  L  *  G  K  F  *  N  S  T  L  F  C  F  L  F  S  S  C  S  H  L  L  S  F  D  T  L  T  *  T  G  A  S  G  S  G  R  K  N  W  P  C  Q  Y  W  L  V  G  G  T  D  F  K  V  H  D  R  V  N  L  L  F  L  R  P  K  S  *  G  R  K  L  C  Y  L  S   : G  R  V  C  *  H  G  *  C  R  D  V  E  I  V  H  P  *  F  S  C  W  M  H  K  K  M  A  V  N  E  E  R  V  S  N  L  Q  E  N  C  V  G  *  R  R  S  E  G  K  M  I  Y  L  A  M  T  C  W  A  L  N  L  C  K  Y  V  F  R  T  F  L  K  W  G  E  N  *  Y  H  L  I  S  L  Y  R  K  C  F  S  C   : Q  K  K  K  K  E </first_frame>
            <second_frame>  F  L  H  R  Q  N  F  S   : V  Y  H  S  A  A  E  L  K  T  L  Q  G  P  E  D  I  I  L  F  L  C  G  *  P  D  L  S  E  T  H  L  F  I :   F  L  F  A  E  R  *  I  Y  C  L  L  S  R  T  M  G  H  R  N  S  F  N  T  P  P  I  F  G  T  E  D  D  Q  R  W  N  I  P  E  Q  A  P  L  P  Y   : A  R  T  G  V  P  E  S  S  N  I  V  Y  P  V  D  S  M  S  I  D  G  A  H  H  S  S  Q  G  H  G  S  R  P  S  G  Y  S  S  L  N  P  N  M  E  I  P  H  C  Q  P  Q  V  Q  G  P  L  H  D  P  F  L  H  S  G  T  G  G  F  H  M  I  H  E  N  Y  P  H  Q  A  S  S  S  A  H  G  G  Q  T  Y  H  G  V  D  G  G  L  V  D  L  T  M  G  S  G  R  G  P  Y  K  R  K  S  P  G  I  P  A  G  G  E  S  G  S  T  S  R  Y  F  D  A  G  S  S  S  D  L  P  S  E  S  W  Q  E  K  Q  N  P  D  P  H  Y  T  T  W  G  L  H  P  N  Y  R  G  N  S  L  S  I  G  G  E  G  S  Q  R  N  V  R  S  R  A  A  F  D  L  Q  N  N  V  G  R  A  H  I  T  S  T  P  S  H  H  S  N  S  S  R  T  S  T  D  Y  C  N  S  V  N  Y  L  A  P  S  S  N  S  S  A  R  E  W  N  H  T  V  M  P  P  A  A  A  H  G  R  N  F  A  P   : D  A  S  F  F  C  Y  D  M  N  H  Y  D  M  V  T  G  N  I  S  T  S  L  E  M  G  N  Y  H  N  D  F  T  S  N  R  T  S  L  P  Q  H  L  P  G  S  L  P  S  S  R  G  V  R  S  S  Y  S  Q  R  S  S  P  T  F  R  T  S  S  S  Y  L  R  H  G  H  V  G  T  S  D  D  G  S  Q  L  F  A  E  G  Y  S  S  R  H  S  R  P  L  S  T  L  G  L  R  S  S  D  R  N  G  R  T  R  V  S  S  D  R  Y  R  S  L  A  G  E  A  G  F  R  E  Q  V  A  S  E  :  G  V  I  I  P  D  R  S  T  Y  Y  G  S  R  S  M  F  D  Q  H  R  D  M  R  L  D  I  D  D  M  G  Y  E  V  S  S  E  T  L  L  C  F  A  F  C  F  H  L  A  A  I  C  S  A  L  I  L  *  H  E  Q  E  L  L  A  L  G  E  R  I  G  H  V  N  T  G  L  S  E  E  L  I  S  K  C  M  T  E  S  I  Y  C  S  S  G  Q  N  H  E  E  G  N  C  V  I  C  L  :  E  E  Y  V  N  M  D  D  V  G  T  L  K  S  C  I  H  D  F  H  V  G  C  I  R  R  W  L  S  M  K  N  V  C  P  I  C  K  K  T  A  L  D  D  D  D  L  K  E  K  *  F  I  *  P  *  L  A  G  H  *  T  C  V  N  M  Y  L  E  H  F  S  N  G  G  K  T  S  I  T  S  *  V  C  T  E  N  V  F  H  V  :  K  K  K  K  K   </second_frame>
            <third_frame>   F  F  T  G  K  T  S  P  :  Y  I  T  Q  P  Q  S  *  R  P  C  K  D  L  K  T  *  Y  F  S  F  V  A  D  Q  I  *  V  R  L  T  C  S   : Y  F  F  S  R  R  D  K  F  I  A  Y  F  H  V  Q  W  G  T  E  I  H  S  T  R  L  Q  Y  L  G  R  K  M  I  R  D  G  T  F  Q  S  R  H  L  C  L  T  :  Q  G  L  V  F  R  K  A  V  I  L  F  I  Q  W  I  V  C  Q  L  T  G  H  T  I  L  L  R  G  M  A  L  G  Q  V  D  I  L  P  *  I  Q  I  W  K  F  H  T  V  S  H  R  F  K  V  L  F  M  T  L  F  Y  I  Q  V  L  E  A  F  I  *  S  M  R  I  I  H  I  K  H  L  H  Q  P  M  V  A  R  H  I  M  G  W  M  V  A  L  L  T  S  Q  W  V  V  G  E  G  R  T  N  E  R  V  L  V  Y  L  Q  V  A  K  V  V  V  Q  A  D  T  L  M  L  A  V  H  L  I  S  L  L  N  L  G  R  R  N  K  I  Q  T  P  I  T  Q  L  G  V  Y  I  L  I  T  E  V  I  V  C  L  L  E  V  R  V  L  R  G  M  *  E  A  E  L  H  L  T  C  K  I  M  *  E  G  L  I  *  Q  V  L  L  H  I  T  L  T  A  V  E  H  P  L  I  I  V  I  Q  *  I  I  *  L  Q  V  R  I  L  Q  Q  G  N  G  T  I  L  S  C  P  L  Q  L  P  M  G  G  T  S  L  L  :  M  Q  A  S  F  V  M  I  *  T  T  M  I  W  L  P  A  I  S  L  P  L  W  R  W  G  I  T  T  M  I  S  P  P  T  E  L  P  F  L  S  I  Y  L  A  A  C  H  L  Q  G  E  S  E  V  A  I  V  K  D  L  P  L  L  L  G  L  L  Q  A  I  C  V  M  G  M  L  G  L  Q  M  T  D  H  S  C  L  L  K  V  T  P  Q  D  I  H  D  H  C  L  L  *  D  C  V  V  V  T  E  M  G  E  L  G  Y  P  V  I  G  T  D  R  W  L  V  R  Q  V  S  V  S  K  L  H  L  R :   A  *  L  F  Q  T  A  L  L  I  M  G  P  E  A  C  L  T  S  I  G  T  *  D  L  T  L  T  T  W  A  M  R  *  V  L  K  L  Y  F  V  L  L  S  V  F  I  L  Q  P  S  A  Q  L  *  Y  F  D  M  N  R  S  F  W  L  W  E  K  E  L  A  M  S  I  L  A  C  R  R  N  *  F  Q  S  A  *  P  S  Q  F  I  V  P  Q  A  K  I  M  R  K  E  I  V  L  S  V  W :   K  S  M  L  T  W  M  M  S  G  R  *  N  R  A  S  M  I  F  M  L  D  A  *  E  D  G  C  Q  *  R  T  C  V  Q  S  A  R  K  L  R  W  M  T  T  I  *  R  K  N  D  L  F  S  H  D  L  L  G  I  E  L  V  *  I  C  I  *  N  I  S  Q  M  G  G  K  L  V  S  P  H  K  F  V  Q  K  M  F  F  M  S :   K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17313" stop="17430"/>
                    <exon start="18111" stop="18848"/>
                    <exon start="18921" stop="19327"/>
                    <exon start="20029" stop="20202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYCLLSRTMGHRNSFNTPPIFGTEDDQRWNIPEQAPLPYARTGVPESSNIVYPVDSMSIDGAHHSSQGHGSRPSGYSSLNPNMEIPHCQPQVQGPLHDPFLHSGTGGFHMIHENYPHQASSSAHGGQTYHGVDGGLVDLTMGSGRGPYKRKSPGIPAGGESGSTSRYFDAGSSSDLPSESWQEKQNPDPHYTTWGLHPNYRGNSLSIGGEGSQRNVRSRAAFDLQNNVGRAHITSTPSHHSNSSRTSTDYCNSVNYLAPSSNSSAREWNHTVMPPAAAHGRNFAPDASFFCYDMNHYDMVTGNISTSLEMGNYHNDFTSNRTSLPQHLPGSLPSSRGVRSSYSQRSSPTFRTSSSYLRHGHVGTSDDGSQLFAEGYSSRHSRPLSTLGLRSSDRNGRTRVSSDRYRSLAGEAGFREQVASEGVIIPDRSTYYGSRSMFDQHRDMRLDIDDMGYEVSSETLLCFAFCFHLAAICSALIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20203" stop="20349"/>
                    <exon start="20707" stop="20859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEQELLALGERIGHVNTGLSEELISKCMTESIYCSSGQNHEEGNCVICLEEYVNMDDVGTLKSCIHDFHVGCIRRWLSMKNVCPICKKTALDDDDLKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6023" e_stop="6049"/>
            <exon e_start="7998" e_stop="8097"/>
            <exon e_start="13405" e_stop="13526"/>
            <exon e_start="17291" e_stop="17430"/>
            <exon e_start="18111" e_stop="18848"/>
            <exon e_start="18921" e_stop="19327"/>
            <exon e_start="20029" e_stop="20349"/>
            <exon e_start="20707" e_stop="20979"/>
            <exon e_start="22144" e_stop="22160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.211" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.988" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6023" e_stop="6049" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7998" e_stop="8097" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8098" i_stop="13404" i_length="5307"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13405" e_stop="13526" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.211" acc_prob="0.914">
            <gDNA_intron_boundary i_start="13527" i_stop="17290" i_length="3764"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17291" e_stop="17430" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="17431" i_stop="18110" i_length="680"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18111" e_stop="18848" e_length="738"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18921" e_stop="19327" e_length="407"/>
          </exon>
          <intron i_serial="6" don_prob="0.964" acc_prob="0.926">
            <gDNA_intron_boundary i_start="19328" i_stop="20028" i_length="701"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="20029" e_stop="20349" e_length="321"/>
          </exon>
          <intron i_serial="7" don_prob="0.860" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20707" e_stop="20979" e_length="273"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20980" i_stop="22143" i_length="1164"/>
          </intron>
          <exon e_serial="9" e_score="0.941">
            <gDNA_exon_boundary e_start="22144" e_stop="22160" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6023" stop="6049"/>
              <exon start="7998" stop="8097"/>
              <exon start="13405" stop="13526"/>
              <exon start="17291" stop="17430"/>
              <exon start="18111" stop="18591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18210" stop="18714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18250" stop="18848"/>
              <exon start="18921" stop="18965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18250" stop="18848"/>
              <exon start="18921" stop="18960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18435" stop="18742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18714" stop="18848"/>
              <exon start="18921" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18739" stop="18848"/>
              <exon start="18921" stop="19156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19041" stop="19327"/>
              <exon start="20029" stop="20349"/>
              <exon start="20707" stop="20936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20232" stop="20349"/>
              <exon start="20707" stop="20979"/>
              <exon start="22144" stop="22160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20293" stop="20349"/>
              <exon start="20707" stop="20979"/>
              <exon start="22144" stop="22160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTCTTCACCGGCAAAACTTCTCCG : TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT : CATTAAGGATATGCTAGTGACCTGCAAACAGAGGGGAACAAAAGAAGAGGAAGGAAAAAAAAATACCTACAAGGATCCTAATAATAACTTATTTCTGGAGTACTCCGAAAAGGAGGTGGCAG : ATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACG : CAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG : ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAG : GGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAGGTAAGTTCTGAAACTCTACTTTGTTTTGCTTTCTGTTTTCATCTTGCAGCCATCTGCTCAGCTTTGATACTTTGACATGAACAGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG : GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTC : AAAAAAAAAAAAAAGAA</gDNA_template>
            <first_frame> G  F  F  T  G  K  T  S  P  :  Y  I  T  Q  P  Q  S  *  R  P  C  K  D  L  K  T  *  Y  F  S  F  V  A  D  Q  I  *  V  R  L  T  C  S   : S  L  R  I  C  *  *  P  A  N  R  G  E  Q  K  K  R  K  E  K  K  I  P  T  R  I  L  I  I  T  Y  F  W  S  T  P  K  R  R  W  Q  :  I  S  F  R  G  E  I  N  L  L  L  T  F  T  Y  N  G  A  Q  K  F  I  Q  H  A  S  N  I  W  D  G  R  *  S  E  M  E  H  S  R  A  G  T  F  A  L  R :   K  D  W  C  S  G  K  Q  *  Y  C  L  S  S  G  *  Y  V  N  *  R  G  T  P  F  F  S  G  A  W  L  *  A  K  W  I  F  F  L  E  S  K  Y  G  N  S  T  L  S  A  T  G  S  R  S  S  S  *  P  F  S  T  F  R  Y  W  R  L  S  Y  D  P  *  E  L  S  T  S  S  I  F  I  S  P  W  W  P  D  I  S  W  G  G  W  W  P  C  *  P  H  N  G  *  W  E  R  A  V  Q  T  K  E  S  W  Y  T  C  R  W  R  K  W  *  Y  K  Q  I  L  *  C  W  Q  F  I  *  S  P  F  *  I  L  A  G  E  T  K  S  R  P  P  L  H  N  L  G  F  T  S  *  L  P  R  *  *  S  V  Y  W  R  *  G  F  S  E  E  C  K  K  Q  S  C  I  *  P  A  K  *  C  R  K  G  S  Y  N  K  Y  S  F  T  S  L  *  Q  Q  *  N  I  H  *  L  L  *  F  S  E  L  S  S  S  K  F  E  F  F  S  K  G  M  E  P  Y  C  H  A  P  C  S  C  P  W  E  E  L  R  S  * :   C  K  L  L  L  L  *  Y  E  P  L  *  Y  G  Y  R  Q  Y  L  Y  L  S  G  D  G  E  L  P  Q  *  F  H  L  Q  Q  N  F  P  S  S  A  F  T  W  Q  L  A  I  F  K  G  S  Q  K  *  L  *  S  K  I  F  P  Y  F  *  D  F  F  K  L  F  A  S  W  A  C  W  D  F  R  *  R  I  T  V  V  C  *  R  L  L  L  K  T  F  T  T  I  V  Y  S  R  T  A  *  *  *  P  K  W  E  N  *  G  I  Q  *  *  V  Q  I  V  G  W  *  G  R  F  P  *  A  S  C  I  *   : G  R  D  Y  S  R  P  L  Y  L  L  W  V  Q  K  H  V  *  P  A  *  G  H  E  T  *  H  *  R  H  G  L  *  G  K  F  *  N  S  T  L  F  C  F  L  F  S  S  C  S  H  L  L  S  F  D  T  L  T  *  T  G  A  S  G  S  G  R  K  N  W  P  C  Q  Y  W  L  V  G  G  T  D  F  K  V  H  D  R  V  N  L  L  F  L  R  P  K  S  *  G  R  K  L  C  Y  L  S   : G  R  V  C  *  H  G  *  C  R  D  V  E  I  V  H  P  *  F  S  C  W  M  H  K  K  M  A  V  N  E  E  R  V  S  N  L  Q  E  N  C  V  G  *  R  R  S  E  G  K  M  I  Y  L  A  M  T  C  W  A  L  N  L  C  K  Y  V  F  R  T  F  L  K  W  G  E  N  *  Y  H  L  I  S  L  Y  R  K  C  F  S  C   : Q  K  K  K  K  E </first_frame>
            <second_frame>  V  S  S  P  A  K  L  L  R :   I  S  L  S  R  R  V  K  D  L  A  R  T  *  R  H  N  T  F  P  L  W  L  T  R  F  E  *  D  S  L  V  H  :  H  *  G  Y  A  S  D  L  Q  T  E  G  N  K  R  R  G  R  K  K  K  Y  L  Q  G  S  *  *  *  L  I  S  G  V  L  R  K  G  G  G  R :   F  L  F  A  E  R  *  I  Y  C  L  L  S  R  T  M  G  H  R  N  S  F  N  T  P  P  I  F  G  T  E  D  D  Q  R  W  N  I  P  E  Q  A  P  L  P  Y   : A  R  T  G  V  P  E  S  S  N  I  V  Y  P  V  D  S  M  S  I  D  G  A  H  H  S  S  Q  G  H  G  S  R  P  S  G  Y  S  S  L  N  P  N  M  E  I  P  H  C  Q  P  Q  V  Q  G  P  L  H  D  P  F  L  H  S  G  T  G  G  F  H  M  I  H  E  N  Y  P  H  Q  A  S  S  S  A  H  G  G  Q  T  Y  H  G  V  D  G  G  L  V  D  L  T  M  G  S  G  R  G  P  Y  K  R  K  S  P  G  I  P  A  G  G  E  S  G  S  T  S  R  Y  F  D  A  G  S  S  S  D  L  P  S  E  S  W  Q  E  K  Q  N  P  D  P  H  Y  T  T  W  G  L  H  P  N  Y  R  G  N  S  L  S  I  G  G  E  G  S  Q  R  N  V  R  S  R  A  A  F  D  L  Q  N  N  V  G  R  A  H  I  T  S  T  P  S  H  H  S  N  S  S  R  T  S  T  D  Y  C  N  S  V  N  Y  L  A  P  S  S  N  S  S  A  R  E  W  N  H  T  V  M  P  P  A  A  A  H  G  R  N  F  A  P   : D  A  S  F  F  C  Y  D  M  N  H  Y  D  M  V  T  G  N  I  S  T  S  L  E  M  G  N  Y  H  N  D  F  T  S  N  R  T  S  L  P  Q  H  L  P  G  S  L  P  S  S  R  G  V  R  S  S  Y  S  Q  R  S  S  P  T  F  R  T  S  S  S  Y  L  R  H  G  H  V  G  T  S  D  D  G  S  Q  L  F  A  E  G  Y  S  S  R  H  S  R  P  L  S  T  L  G  L  R  S  S  D  R  N  G  R  T  R  V  S  S  D  R  Y  R  S  L  A  G  E  A  G  F  R  E  Q  V  A  S  E  :  G  V  I  I  P  D  R  S  T  Y  Y  G  S  R  S  M  F  D  Q  H  R  D  M  R  L  D  I  D  D  M  G  Y  E  V  S  S  E  T  L  L  C  F  A  F  C  F  H  L  A  A  I  C  S  A  L  I  L  *  H  E  Q  E  L  L  A  L  G  E  R  I  G  H  V  N  T  G  L  S  E  E  L  I  S  K  C  M  T  E  S  I  Y  C  S  S  G  Q  N  H  E  E  G  N  C  V  I  C  L  :  E  E  Y  V  N  M  D  D  V  G  T  L  K  S  C  I  H  D  F  H  V  G  C  I  R  R  W  L  S  M  K  N  V  C  P  I  C  K  K  T  A  L  D  D  D  D  L  K  E  K  *  F  I  *  P  *  L  A  G  H  *  T  C  V  N  M  Y  L  E  H  F  S  N  G  G  K  T  S  I  T  S  *  V  C  T  E  N  V  F  H  V  :  K  K  K  K  K   </second_frame>
            <third_frame>   F  L  H  R  Q  N  F  S   : V  Y  H  S  A  A  E  L  K  T  L  Q  G  P  E  D  I  I  L  F  L  C  G  *  P  D  L  S  E  T  H  L  F  I :   I  K  D  M  L  V  T  C  K  Q  R  G  T  K  E  E  E  G  K  K  N  T  Y  K  D  P  N  N  N  L  F  L  E  Y  S  E  K  E  V  A   : D  F  F  S  R  R  D  K  F  I  A  Y  F  H  V  Q  W  G  T  E  I  H  S  T  R  L  Q  Y  L  G  R  K  M  I  R  D  G  T  F  Q  S  R  H  L  C  L  T  :  Q  G  L  V  F  R  K  A  V  I  L  F  I  Q  W  I  V  C  Q  L  T  G  H  T  I  L  L  R  G  M  A  L  G  Q  V  D  I  L  P  *  I  Q  I  W  K  F  H  T  V  S  H  R  F  K  V  L  F  M  T  L  F  Y  I  Q  V  L  E  A  F  I  *  S  M  R  I  I  H  I  K  H  L  H  Q  P  M  V  A  R  H  I  M  G  W  M  V  A  L  L  T  S  Q  W  V  V  G  E  G  R  T  N  E  R  V  L  V  Y  L  Q  V  A  K  V  V  V  Q  A  D  T  L  M  L  A  V  H  L  I  S  L  L  N  L  G  R  R  N  K  I  Q  T  P  I  T  Q  L  G  V  Y  I  L  I  T  E  V  I  V  C  L  L  E  V  R  V  L  R  G  M  *  E  A  E  L  H  L  T  C  K  I  M  *  E  G  L  I  *  Q  V  L  L  H  I  T  L  T  A  V  E  H  P  L  I  I  V  I  Q  *  I  I  *  L  Q  V  R  I  L  Q  Q  G  N  G  T  I  L  S  C  P  L  Q  L  P  M  G  G  T  S  L  L  :  M  Q  A  S  F  V  M  I  *  T  T  M  I  W  L  P  A  I  S  L  P  L  W  R  W  G  I  T  T  M  I  S  P  P  T  E  L  P  F  L  S  I  Y  L  A  A  C  H  L  Q  G  E  S  E  V  A  I  V  K  D  L  P  L  L  L  G  L  L  Q  A  I  C  V  M  G  M  L  G  L  Q  M  T  D  H  S  C  L  L  K  V  T  P  Q  D  I  H  D  H  C  L  L  *  D  C  V  V  V  T  E  M  G  E  L  G  Y  P  V  I  G  T  D  R  W  L  V  R  Q  V  S  V  S  K  L  H  L  R :   A  *  L  F  Q  T  A  L  L  I  M  G  P  E  A  C  L  T  S  I  G  T  *  D  L  T  L  T  T  W  A  M  R  *  V  L  K  L  Y  F  V  L  L  S  V  F  I  L  Q  P  S  A  Q  L  *  Y  F  D  M  N  R  S  F  W  L  W  E  K  E  L  A  M  S  I  L  A  C  R  R  N  *  F  Q  S  A  *  P  S  Q  F  I  V  P  Q  A  K  I  M  R  K  E  I  V  L  S  V  W :   K  S  M  L  T  W  M  M  S  G  R  *  N  R  A  S  M  I  F  M  L  D  A  *  E  D  G  C  Q  *  R  T  C  V  Q  S  A  R  K  L  R  W  M  T  T  I  *  R  K  N  D  L  F  S  H  D  L  L  G  I  E  L  V  *  I  C  I  *  N  I  S  Q  M  G  G  K  L  V  S  P  H  K  F  V  Q  K  M  F  F  M  S :   K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17313" stop="17430"/>
                    <exon start="18111" stop="18848"/>
                    <exon start="18921" stop="19327"/>
                    <exon start="20029" stop="20202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYCLLSRTMGHRNSFNTPPIFGTEDDQRWNIPEQAPLPYARTGVPESSNIVYPVDSMSIDGAHHSSQGHGSRPSGYSSLNPNMEIPHCQPQVQGPLHDPFLHSGTGGFHMIHENYPHQASSSAHGGQTYHGVDGGLVDLTMGSGRGPYKRKSPGIPAGGESGSTSRYFDAGSSSDLPSESWQEKQNPDPHYTTWGLHPNYRGNSLSIGGEGSQRNVRSRAAFDLQNNVGRAHITSTPSHHSNSSRTSTDYCNSVNYLAPSSNSSAREWNHTVMPPAAAHGRNFAPDASFFCYDMNHYDMVTGNISTSLEMGNYHNDFTSNRTSLPQHLPGSLPSSRGVRSSYSQRSSPTFRTSSSYLRHGHVGTSDDGSQLFAEGYSSRHSRPLSTLGLRSSDRNGRTRVSSDRYRSLAGEAGFREQVASEGVIIPDRSTYYGSRSMFDQHRDMRLDIDDMGYEVSSETLLCFAFCFHLAAICSALIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20203" stop="20349"/>
                    <exon start="20707" stop="20859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEQELLALGERIGHVNTGLSEELISKCMTESIYCSSGQNHEEGNCVICLEEYVNMDDVGTLKSCIHDFHVGCIRRWLSMKNVCPICKKTALDDDDLKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5965" e_stop="6049"/>
            <exon e_start="7998" e_stop="8097"/>
            <exon e_start="17291" e_stop="17430"/>
            <exon e_start="18111" e_stop="18848"/>
            <exon e_start="18921" e_stop="19327"/>
            <exon e_start="20029" e_stop="20127"/>
            <exon e_start="20212" e_stop="20349"/>
            <exon e_start="20707" e_stop="21008"/>
            <exon e_start="21504" e_stop="21512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5965" e_stop="6049" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7998" e_stop="8097" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.914">
            <gDNA_intron_boundary i_start="8098" i_stop="17290" i_length="9193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17291" e_stop="17430" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="17431" i_stop="18110" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18111" e_stop="18848" e_length="738"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="18849" i_stop="18920" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18921" e_stop="19327" e_length="407"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.926">
            <gDNA_intron_boundary i_start="19328" i_stop="20028" i_length="701"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20029" e_stop="20127" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="20128" i_stop="20211" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20212" e_stop="20349" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.860" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20350" i_stop="20706" i_length="357"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="20707" e_stop="21008" e_length="302"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21009" i_stop="21503" i_length="495"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21504" e_stop="21512" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5965" stop="6049"/>
              <exon start="7998" stop="8097"/>
              <exon start="17291" stop="17430"/>
              <exon start="18111" stop="18848"/>
              <exon start="18921" stop="19327"/>
              <exon start="20029" stop="20127"/>
              <exon start="20212" stop="20349"/>
              <exon start="20707" stop="21008"/>
              <exon start="21504" stop="21512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6024" stop="6049"/>
              <exon start="7998" stop="8097"/>
              <exon start="17291" stop="17430"/>
              <exon start="18111" stop="18248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18210" stop="18714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18250" stop="18848"/>
              <exon start="18921" stop="18965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18250" stop="18848"/>
              <exon start="18921" stop="18960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18435" stop="18742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18714" stop="18848"/>
              <exon start="18921" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18739" stop="18848"/>
              <exon start="18921" stop="19156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19138" stop="19327"/>
              <exon start="20029" stop="20127"/>
              <exon start="20212" stop="20349"/>
              <exon start="20707" stop="21008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCG : TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT : ATTTCTTTTCGCGGAGAGATAAATTTATTGCTTACTTTCACGTACAATGGGGCACAGAAATTCATTCAACACGCCTCCAATATTTGGGACGGAAGATGATCAGAGATGGAACATTCCAGAGCAGGCACCTTTGCCTTACG : CAAGGACTGGTGTTCCGGAAAGCAGTAATATTGTTTATCCAGTGGATAGTATGTCAATTGACGGGGCACACCATTCTTCTCAGGGGCATGGCTCTAGGCCAAGTGGATATTCTTCCTTGAATCCAAATATGGAAATTCCACACTGTCAGCCACAGGTTCAAGGTCCTCTTCATGACCCTTTTCTACATTCAGGTACTGGAGGCTTTCATATGATCCATGAGAATTATCCACATCAAGCATCTTCATCAGCCCATGGTGGCCAGACATATCATGGGGTGGATGGTGGCCTTGTTGACCTCACAATGGGTAGTGGGAGAGGGCCGTACAAACGAAAGAGTCCTGGTATACCTGCAGGTGGCGAAAGTGGTAGTACAAGCAGATACTTTGATGCTGGCAGTTCATCTGATCTCCCTTCTGAATCTTGGCAGGAGAAACAAAATCCAGACCCCCATTACACAACTTGGGGTTTACATCCTAATTACCGAGGTAATAGTCTGTCTATTGGAGGTGAGGGTTCTCAGAGGAATGTAAGAAGCAGAGCTGCATTTGACCTGCAAAATAATGTAGGAAGGGCTCATATAACAAGTACTCCTTCACATCACTCTAACAGCAGTAGAACATCCACTGATTATTGTAATTCAGTGAATTATCTAGCTCCAAGTTCGAATTCTTCAGCAAGGGAATGGAACCATACTGTCATGCCCCCTGCAGCTGCCCATGGGAGGAACTTCGCTCCTG : ATGCAAGCTTCTTTTGTTATGATATGAACCACTATGATATGGTTACCGGCAATATCTCTACCTCTCTGGAGATGGGGAATTACCACAATGATTTCACCTCCAACAGAACTTCCCTTCCTCAGCATTTACCTGGCAGCTTGCCATCTTCAAGGGGAGTCAGAAGTAGCTATAGTCAAAGATCTTCCCCTACTTTTAGGACTTCTTCAAGCTATTTGCGTCATGGGCATGTTGGGACTTCAGATGACGGATCACAGTTGTTTGCTGAAGGTTACTCCTCAAGACATTCACGACCATTGTCTACTCTAGGACTGCGTAGTAGTGACCGAAATGGGAGAACTAGGGTATCCAGTGATAGGTACAGATCGTTGGCTGGTGAGGCAGGTTTCCGTGAGCAAGTTGCATCTGAG : GGCGTGATTATTCCAGACCGCTCTACTTATTATGGGTCCAGAAGCATGTTTGACCAGCATAGGGACATGAGACTTGACATTGACGACATGGGCTATGAG : GAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAAGTGCATGACCGAGTCAATTTATTGTTCCTCAGGCCAAAATCATGAGGAAGGAAATTGTGTTATCTGTCTG : GAAGAGTATGTTAACATGGATGATGTCGGGACGTTGAAATCGTGCATCCATGATTTTCATGTTGGATGCATAAGAAGATGGCTGTCAATGAAGAACGTGTGTCCAATCTGCAAGAAAACTGCGTTGGATGACGACGATCTGAAGGAAAAATGATTTATTTAGCCATGACTTGCTGGGCATTGAACTTGTGTAAATATGTATTTAGAACATTTCTCAAATGGGGGGAAAACTAGTATCACCTCATAAGTTTGTACAGAAAATGTTTTTCATGTCATTAGTCGTTTCTTTCAAATGTCTAAAGA : AAAAAAAAA</gDNA_template>
            <first_frame> I  H  K  L  N  L  F  V  S  I  I  R  S  S  T  S  K  S  Y  R  F  L  H  R  Q  N  F  S   : V  Y  H  S  A  A  E  L  K  T  L  Q  G  P  E  D  I  I  L  F  L  C  G  *  P  D  L  S  E  T  H  L  F  I :   F  L  F  A  E  R  *  I  Y  C  L  L  S  R  T  M  G  H  R  N  S  F  N  T  P  P  I  F  G  T  E  D  D  Q  R  W  N  I  P  E  Q  A  P  L  P  Y   : A  R  T  G  V  P  E  S  S  N  I  V  Y  P  V  D  S  M  S  I  D  G  A  H  H  S  S  Q  G  H  G  S  R  P  S  G  Y  S  S  L  N  P  N  M  E  I  P  H  C  Q  P  Q  V  Q  G  P  L  H  D  P  F  L  H  S  G  T  G  G  F  H  M  I  H  E  N  Y  P  H  Q  A  S  S  S  A  H  G  G  Q  T  Y  H  G  V  D  G  G  L  V  D  L  T  M  G  S  G  R  G  P  Y  K  R  K  S  P  G  I  P  A  G  G  E  S  G  S  T  S  R  Y  F  D  A  G  S  S  S  D  L  P  S  E  S  W  Q  E  K  Q  N  P  D  P  H  Y  T  T  W  G  L  H  P  N  Y  R  G  N  S  L  S  I  G  G  E  G  S  Q  R  N  V  R  S  R  A  A  F  D  L  Q  N  N  V  G  R  A  H  I  T  S  T  P  S  H  H  S  N  S  S  R  T  S  T  D  Y  C  N  S  V  N  Y  L  A  P  S  S  N  S  S  A  R  E  W  N  H  T  V  M  P  P  A  A  A  H  G  R  N  F  A  P   : D  A  S  F  F  C  Y  D  M  N  H  Y  D  M  V  T  G  N  I  S  T  S  L  E  M  G  N  Y  H  N  D  F  T  S  N  R  T  S  L  P  Q  H  L  P  G  S  L  P  S  S  R  G  V  R  S  S  Y  S  Q  R  S  S  P  T  F  R  T  S  S  S  Y  L  R  H  G  H  V  G  T  S  D  D  G  S  Q  L  F  A  E  G  Y  S  S  R  H  S  R  P  L  S  T  L  G  L  R  S  S  D  R  N  G  R  T  R  V  S  S  D  R  Y  R  S  L  A  G  E  A  G  F  R  E  Q  V  A  S  E  :  G  V  I  I  P  D  R  S  T  Y  Y  G  S  R  S  M  F  D  Q  H  R  D  M  R  L  D  I  D  D  M  G  Y  E  :  E  L  L  A  L  G  E  R  I  G  H  V  N  T  G  L  S  E  E  L  I  S  K  C  M  T  E  S  I  Y  C  S  S  G  Q  N  H  E  E  G  N  C  V  I  C  L  :  E  E  Y  V  N  M  D  D  V  G  T  L  K  S  C  I  H  D  F  H  V  G  C  I  R  R  W  L  S  M  K  N  V  C  P  I  C  K  K  T  A  L  D  D  D  D  L  K  E  K  *  F  I  *  P  *  L  A  G  H  *  T  C  V  N  M  Y  L  E  H  F  S  N  G  G  K  T  S  I  T  S  *  V  C  T  E  N  V  F  H  V  I  S  R  F  F  Q  M  S  K  E :   K  K   </first_frame>
            <second_frame>  F  I  N  *  I  Y  S  S  Q  S  S  D  H  P  Q  A  K  A  T  G  F  F  T  G  K  T  S  P  :  Y  I  T  Q  P  Q  S  *  R  P  C  K  D  L  K  T  *  Y  F  S  F  V  A  D  Q  I  *  V  R  L  T  C  S   : Y  F  F  S  R  R  D  K  F  I  A  Y  F  H  V  Q  W  G  T  E  I  H  S  T  R  L  Q  Y  L  G  R  K  M  I  R  D  G  T  F  Q  S  R  H  L  C  L  T  :  Q  G  L  V  F  R  K  A  V  I  L  F  I  Q  W  I  V  C  Q  L  T  G  H  T  I  L  L  R  G  M  A  L  G  Q  V  D  I  L  P  *  I  Q  I  W  K  F  H  T  V  S  H  R  F  K  V  L  F  M  T  L  F  Y  I  Q  V  L  E  A  F  I  *  S  M  R  I  I  H  I  K  H  L  H  Q  P  M  V  A  R  H  I  M  G  W  M  V  A  L  L  T  S  Q  W  V  V  G  E  G  R  T  N  E  R  V  L  V  Y  L  Q  V  A  K  V  V  V  Q  A  D  T  L  M  L  A  V  H  L  I  S  L  L  N  L  G  R  R  N  K  I  Q  T  P  I  T  Q  L  G  V  Y  I  L  I  T  E  V  I  V  C  L  L  E  V  R  V  L  R  G  M  *  E  A  E  L  H  L  T  C  K  I  M  *  E  G  L  I  *  Q  V  L  L  H  I  T  L  T  A  V  E  H  P  L  I  I  V  I  Q  *  I  I  *  L  Q  V  R  I  L  Q  Q  G  N  G  T  I  L  S  C  P  L  Q  L  P  M  G  G  T  S  L  L  :  M  Q  A  S  F  V  M  I  *  T  T  M  I  W  L  P  A  I  S  L  P  L  W  R  W  G  I  T  T  M  I  S  P  P  T  E  L  P  F  L  S  I  Y  L  A  A  C  H  L  Q  G  E  S  E  V  A  I  V  K  D  L  P  L  L  L  G  L  L  Q  A  I  C  V  M  G  M  L  G  L  Q  M  T  D  H  S  C  L  L  K  V  T  P  Q  D  I  H  D  H  C  L  L  *  D  C  V  V  V  T  E  M  G  E  L  G  Y  P  V  I  G  T  D  R  W  L  V  R  Q  V  S  V  S  K  L  H  L  R :   A  *  L  F  Q  T  A  L  L  I  M  G  P  E  A  C  L  T  S  I  G  T  *  D  L  T  L  T  T  W  A  M  R :   S  F  W  L  W  E  K  E  L  A  M  S  I  L  A  C  R  R  N  *  F  Q  S  A  *  P  S  Q  F  I  V  P  Q  A  K  I  M  R  K  E  I  V  L  S  V  W :   K  S  M  L  T  W  M  M  S  G  R  *  N  R  A  S  M  I  F  M  L  D  A  *  E  D  G  C  Q  *  R  T  C  V  Q  S  A  R  K  L  R  W  M  T  T  I  *  R  K  N  D  L  F  S  H  D  L  L  G  I  E  L  V  *  I  C  I  *  N  I  S  Q  M  G  G  K  L  V  S  P  H  K  F  V  Q  K  M  F  F  M  S  L  V  V  S  F  K  C  L  K   : K  K  K  </second_frame>
            <third_frame>   S  *  I  K  F  I  R  L  N  H  P  I  I  H  K  Q  K  L  P  V  S  S  P  A  K  L  L  R :   I  S  L  S  R  R  V  K  D  L  A  R  T  *  R  H  N  T  F  P  L  W  L  T  R  F  E  *  D  S  L  V  H  :  I  S  F  R  G  E  I  N  L  L  L  T  F  T  Y  N  G  A  Q  K  F  I  Q  H  A  S  N  I  W  D  G  R  *  S  E  M  E  H  S  R  A  G  T  F  A  L  R :   K  D  W  C  S  G  K  Q  *  Y  C  L  S  S  G  *  Y  V  N  *  R  G  T  P  F  F  S  G  A  W  L  *  A  K  W  I  F  F  L  E  S  K  Y  G  N  S  T  L  S  A  T  G  S  R  S  S  S  *  P  F  S  T  F  R  Y  W  R  L  S  Y  D  P  *  E  L  S  T  S  S  I  F  I  S  P  W  W  P  D  I  S  W  G  G  W  W  P  C  *  P  H  N  G  *  W  E  R  A  V  Q  T  K  E  S  W  Y  T  C  R  W  R  K  W  *  Y  K  Q  I  L  *  C  W  Q  F  I  *  S  P  F  *  I  L  A  G  E  T  K  S  R  P  P  L  H  N  L  G  F  T  S  *  L  P  R  *  *  S  V  Y  W  R  *  G  F  S  E  E  C  K  K  Q  S  C  I  *  P  A  K  *  C  R  K  G  S  Y  N  K  Y  S  F  T  S  L  *  Q  Q  *  N  I  H  *  L  L  *  F  S  E  L  S  S  S  K  F  E  F  F  S  K  G  M  E  P  Y  C  H  A  P  C  S  C  P  W  E  E  L  R  S  * :   C  K  L  L  L  L  *  Y  E  P  L  *  Y  G  Y  R  Q  Y  L  Y  L  S  G  D  G  E  L  P  Q  *  F  H  L  Q  Q  N  F  P  S  S  A  F  T  W  Q  L  A  I  F  K  G  S  Q  K  *  L  *  S  K  I  F  P  Y  F  *  D  F  F  K  L  F  A  S  W  A  C  W  D  F  R  *  R  I  T  V  V  C  *  R  L  L  L  K  T  F  T  T  I  V  Y  S  R  T  A  *  *  *  P  K  W  E  N  *  G  I  Q  *  *  V  Q  I  V  G  W  *  G  R  F  P  *  A  S  C  I  *   : G  R  D  Y  S  R  P  L  Y  L  L  W  V  Q  K  H  V  *  P  A  *  G  H  E  T  *  H  *  R  H  G  L  *   : G  A  S  G  S  G  R  K  N  W  P  C  Q  Y  W  L  V  G  G  T  D  F  K  V  H  D  R  V  N  L  L  F  L  R  P  K  S  *  G  R  K  L  C  Y  L  S   : G  R  V  C  *  H  G  *  C  R  D  V  E  I  V  H  P  *  F  S  C  W  M  H  K  K  M  A  V  N  E  E  R  V  S  N  L  Q  E  N  C  V  G  *  R  R  S  E  G  K  M  I  Y  L  A  M  T  C  W  A  L  N  L  C  K  Y  V  F  R  T  F  L  K  W  G  E  N  *  Y  H  L  I  S  L  Y  R  K  C  F  S  C  H  *  S  F  L  S  N  V  *  R  :  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17313" stop="17430"/>
                    <exon start="18111" stop="18848"/>
                    <exon start="18921" stop="19327"/>
                    <exon start="20029" stop="20127"/>
                    <exon start="20212" stop="20349"/>
                    <exon start="20707" stop="20859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1650</number_coding_nucleotides>
                  <number_encoded_amino_acids>550</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYCLLSRTMGHRNSFNTPPIFGTEDDQRWNIPEQAPLPYARTGVPESSNIVYPVDSMSIDGAHHSSQGHGSRPSGYSSLNPNMEIPHCQPQVQGPLHDPFLHSGTGGFHMIHENYPHQASSSAHGGQTYHGVDGGLVDLTMGSGRGPYKRKSPGIPAGGESGSTSRYFDAGSSSDLPSESWQEKQNPDPHYTTWGLHPNYRGNSLSIGGEGSQRNVRSRAAFDLQNNVGRAHITSTPSHHSNSSRTSTDYCNSVNYLAPSSNSSAREWNHTVMPPAAAHGRNFAPDASFFCYDMNHYDMVTGNISTSLEMGNYHNDFTSNRTSLPQHLPGSLPSSRGVRSSYSQRSSPTFRTSSSYLRHGHVGTSDDGSQLFAEGYSSRHSRPLSTLGLRSSDRNGRTRVSSDRYRSLAGEAGFREQVASEGVIIPDRSTYYGSRSMFDQHRDMRLDIDDMGYEELLALGERIGHVNTGLSEELISKCMTESIYCSSGQNHEEGNCVICLEEYVNMDDVGTLKSCIHDFHVGCIRRWLSMKNVCPICKKTALDDDDLKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5863" e_stop="6049"/>
            <exon e_start="7998" e_stop="8097"/>
            <exon e_start="8854" e_stop="9024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="0.968"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="0.970"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="5863" e_stop="6049" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6050" i_stop="7997" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="7998" e_stop="8097" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8098" i_stop="8853" i_length="756"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8854" e_stop="9024" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5863" stop="6049"/>
              <exon start="7998" stop="8097"/>
              <exon start="8854" stop="9024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5863" stop="6049"/>
              <exon start="7998" stop="8097"/>
              <exon start="8854" stop="9013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTCTCTTTACGTGTTTGTCTTTTCTTTTATCTAAAATAATAATGTTAGTAAAAATAATAATTATCTCCCTATATTAATTCTCAGGAAAAAAAAAGTTATTCATAAATTAAATTTATTCGTCTCAATCATCCGATCATCCACAAGCAAAAGCTACCGGTTTCTTCACCGGCAAAACTTCTCCG : TATATCACTCAGCCGCAGAGTTAAAGACCTTGCAAGGACCTGAAGACATAATACTTTTCCTTTGTGGCTGACCAGATTTGAGTGAGACTCACTTGTTCAT : GCTAGGGAAGCTGGCGGCTTATTATTGTCAGATGAAGGATATTGCCCTAGATTCATAAGAATGGGTTTCCTGGGCTAAATAGTTCATACTAGGGCTTTGTTGGAGTTGATTTGAGCTTAATATTGGGCATGTGATCAAATTCCATTTCTATTGGCATATCTTGTTTTGACA</gDNA_template>
            <first_frame> F  L  S  L  Y  V  F  V  F  S  F  I  *  N  N  N  V  S  K  N  N  N  Y  L  P  I  L  I  L  R  K  K  K  V  I  H  K  L  N  L  F  V  S  I  I  R  S  S  T  S  K  S  Y  R  F  L  H  R  Q  N  F  S   : V  Y  H  S  A  A  E  L  K  T  L  Q  G  P  E  D  I  I  L  F  L  C  G  *  P  D  L  S  E  T  H  L  F  M :   L  G  K  L  A  A  Y  Y  C  Q  M  K  D  I  A  L  D  S  *  E  W  V  S  W  A  K  *  F  I  L  G  L  C  W  S  *  F  E  L  N  I  G  H  V  I  K  F  H  F  Y  W  H  I  L  F  *   </first_frame>
            <second_frame>  F  S  L  F  T  C  L  S  F  L  L  S  K  I  I  M  L  V  K  I  I  I  I  S  L  Y  *  F  S  G  K  K  K  L  F  I  N  *  I  Y  S  S  Q  S  S  D  H  P  Q  A  K  A  T  G  F  F  T  G  K  T  S  P  :  Y  I  T  Q  P  Q  S  *  R  P  C  K  D  L  K  T  *  Y  F  S  F  V  A  D  Q  I  *  V  R  L  T  C  S   : C  *  G  S  W  R  L  I  I  V  R  *  R  I  L  P  *  I  H  K  N  G  F  P  G  L  N  S  S  Y  *  G  F  V  G  V  D  L  S  L  I  L  G  M  *  S  N  S  I  S  I  G  I  S  C  F  D  </second_frame>
            <third_frame>   S  L  S  L  R  V  C  L  F  F  Y  L  K  *  *  C  *  *  K  *  *  L  S  P  Y  I  N  S  Q  E  K  K  S  Y  S  *  I  K  F  I  R  L  N  H  P  I  I  H  K  Q  K  L  P  V  S  S  P  A  K  L  L  R :   I  S  L  S  R  R  V  K  D  L  A  R  T  *  R  H  N  T  F  P  L  W  L  T  R  F  E  *  D  S  L  V  H  :  A  R  E  A  G  G  L  L  L  S  D  E  G  Y  C  P  R  F  I  R  M  G  F  L  G  *  I  V  H  T  R  A  L  L  E  L  I  *  A  *  Y  W  A  C  D  Q  I  P  F  L  L  A  Y  L  V  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5902" stop="6049"/>
                    <exon start="7998" stop="8068"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNVSKNNNYLPILILRKKKVIHKLNLFVSIIRSSTSKSYRFLHRQNFSVYHSAAELKTLQGPEDIILFLCG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="28025" PGL_stop="34595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28026" e_stop="28166"/>
            <exon e_start="30651" e_stop="30938"/>
            <exon e_start="31619" e_stop="31767"/>
            <exon e_start="32245" e_stop="32433"/>
            <exon e_start="32933" e_stop="34595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28026" e_stop="28166" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30651" e_stop="30938" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.810">
            <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31619" e_stop="31767" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32245" e_stop="32433" e_length="189"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32933" e_stop="34595" e_length="1663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28166"/>
              <exon start="30651" stop="30869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28029" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28130" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="32958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28131" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28134" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28134" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28136" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30845" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30845" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30853" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="32965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30861" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30895" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32933" stop="33498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32933" stop="33472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33930" stop="34595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33996" stop="34581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34061" stop="34474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34066" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34246" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34247" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34291" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG : TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG : TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG : TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG : TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACTATAAGCGTGTT</gDNA_template>
            <first_frame> L  *  K  K  T  N  K  L  Y  K  L  T  *  A  I  P  I  F  Y  K  L  M  G  A  L  Y  I  F  C  I  I  N  F  K  V  Y  F  L  I  Q  H  L  F  S  F  M  K  :  F  H  *  V  G  L  Q  L  E  T  *  K  S  N  K  V  A  G  F  G  C  *  L  I  S  A  P  N  F  Q  I  Q  Y  S  F  F  H  F  K  V  Q  T  S  A  Q  F  Q  N  H  L  L  L  Y  K  L  S  F  W  D  I  S  S  N  I  G  Q  S  T  T  L  H  Y  T  S  K  T  W  P  I  V  Q  D  F  S  Y  C  Y  Y  L  Y  F  F  T  F  I  M  :  *  K  V  S  S  N  *  I  T  T  Q  R  V  A  Q  E  L  K  I  S  S  K  N  K  W  Q  H  C  T  T  N  M  G  T  Q  Q  F  L  G  L  E  I  F  F  M  I  A  W  L  S :   H  V  M  H  H  Y  I  W  T  Q  Q  M  G  *  N  Q  K  K  N  L  Q  G  I  L  G  *  G  I  L  S  I  L  R  Q  L  N  K  H  L  K  K  N  V  Q  I  P  F  L  V  Q  I  L  L  L  F  P  L  G  M  V  F  F  G :   *  E  G  Q  *  K  L  K  *  K  Q  E  G  K  I  A  R  K  L  T  F  Q  K  L  R  S  T  S  L  I  T  T  I  Q  S  H  L  C  F  Q  D  F  N  Q  L  V  L  I  L  K  E  L  L  L  Y  L  V  I  N  S  L  N  S  R  L  I  I  N  F  L  K  I  I  N  Y  T  K  L  C  L  F  *  S  K  N  S  C  R  V  H  S  *  G  P  F  G  W  T  *  L  *  K  S  T  F  K  S  Y  A  F  G  *  K  C  *  S  C  Y  A  K  R  E  N  G  K  M  E  E  R  D  V  R  V  M  W  I  I  W  R  L  Y  K  N  I  K  G  K  K  I  K  M  W  S  T  *  N  S  L  *  A  K  K  K  A  P  L  P  Q  L  L  T  F  G  L  K  *  V  F  F  F  N  L  K  *  V  I  L  S  I  A  K  Q  L  N  K  S  K  I  S  F  *  V  S  L  I  S  F  *  A  E  L  N  K  L  L  D  N  N  F  F  F  Y  V  S  P  L  K  *  *  T  L  *  V  *  G  S  S  Q  P  C  N  L  S  H  K  F  M  S  F  Q  F  M  H  F  G  *  K  N  N  Y  S  Y  K  F  L  F  L  L  F  *  S  K  K  I  I  *  S  R  L  L  E  I  V  A  T  C  N  Y  V  T  Q  R  *  *  F  C  L  F  T  Y  L  H  L  N  T  R  H  H  *  L  K  S  Q  T  P  *  P  S  Q  L  Y  L  S  T  R  K  L  I  Y  K  K  S  N  L  T  L  N  I  Y  Q  L  T  P  N  C  L  L  F  H  L  E  K  K  *  G  L  T  L  *  D  E  F  I  V  *  T  *  S  T  G  F  T  Q  P  W  T  P  L  S  I  P  T  T  Q  S  T  L  R  V  D  A  R  H  Q  T  L  T  R  R  L  F  Y  T  Q  D  L  I  A  K  L  Q  *  F  *  T  I  C  T  T  R  I  Y  *  T  K  K  G  Y  *  L  W  I  K  N  W  L  V  I  Q  I  L  H  H  L  W  *  K  W  L  M  I  I  I  I  F  I  N  N  L  L  G  L  C  L  F  C  L  K  I  I  H  L  L  E  I  K  V  K  L  E  K  Y  V  A  M  *  I  V  L  S  G  Y  L  I  V  M  *  C  G  C  N  F  F  F  K  V  G  S  H  T  R  C  L  S  S  A  R  S  A  R  G  C  I  C  F  V  V  L  F  F  V  C  V  V  L  N  L  Q  V  K  *  *  *  *  C  S  N  Q  V  Y  Y  K  R  V </first_frame>
            <second_frame>  Y  K  K  K  Q  T  N  Y  T  N  *  P  K  L  F  Q  S  S  I  N  *  W  G  H  Y  T  S  F  V  *  S  T  S  K  S  T  F  S  Y  N  I  F  F  H  S  *  S :   F  I  E  W  D  Y  N  *  R  P  K  S  P  T  K  W  L  V  L  V  A  N  *  L  V  H  Q  I  F  K  S  N  I  P  F  S  T  S  K  F  K  L  V  H  N  S  K  T  I  C  Y  Y  I  N  *  A  F  G  T  F  H  Q  I  L  A  K  V  Q  H  F  I  T  H  Q  R  H  G  Q  L  F  K  I  S  L  I  V  I  T  S  T  S  S  H  S  *  C :   K  K  *  A  P  I  K  L  L  H  K  E  L  P  K  S  *  R  Y  H  Q  R  T  S  G  N  I  V  P  Q  T  W  E  H  S  S  F  L  D  *  K  S  F  S  *  L  H  G  *   : V  M  *  C  I  T  I  F  G  H  S  K  W  A  R  I  R  K  R  I  S  K  E  F  W  D  E  E  F  *  V  Y  *  D  N  *  T  S  T  *  K  R  M  S  K  Y  R  F  L  C  R  Y  C  C  S  F  R  *  G  W  S  S  L   : V  R  R  A  N  K  N  *  N  E  N  R  K  E  R  *  Q  G  N  L  L  F  R  S  *  E  V  P  P  *  S  Q  R  F  N  L  I  C  A  F  K  I  S  I  N  W  C  *  Y  *  R  N  C  C  S  T  W  *  S  T  L  *  T  L  V  *  S  *  I  F  *  K  *  L  I  I  Q  N  Y  V  Y  F  D  R  K  I  H  V  E  F  I  L  R  A  R  L  D  G  L  S  F  K  K  V  L  L  K  V  M  H  L  D  K  S  V  E  V  A  M  P  N  V  K  M  E  K  W  K  K  E  M  L  E  L  C  G  *  F  G  D  C  I  K  I  L  R  A  K  R  *  K  C  G  Q  L  K  T  A  Y  K  L  K  K  K  H  P  Y  P  S  F  *  L  L  A  *  N  K  F  F  F  L  T  *  N  K  L  F  *  V  L  P  N  N  *  I  S  Q  K  S  V  F  K  S  V  *  S  A  F  K  L  N  *  T  S  S  *  T  I  I  F  S  F  T  Y  L  H  L  N  S  R  H  Y  K  F  E  A  V  L  N  H  V  T  *  V  T  N  L  *  V  S  N  L  C  T  L  V  K  K  I  T  I  H  I  N  F  F  F  Y  Y  F  N  R  K  K  S  S  R  V  D  C  *  K  *  L  Q  L  A  T  M  *  H  R  D  N  N  F  V  F  L  R  I  S  T  *  I  P  D  I  T  N  L  S  H  K  P  L  D  L  P  N  Y  I  *  A  L  E  N  L  Y  I  K  N  R  I  *  R  L  I  F  I  N  *  H  L  I  V  F  C  F  I  W  K  K  N  R  G  S  L  C  R  T  S  S  L  C  E  L  S  P  Q  A  L  P  N  R  G  P  H  Y  R  S  R  L  R  K  V  P  *  G  S  M  P  V  T  K  P  *  P  G  G  C  F  I  L  K  I  *  S  R  N  Y  N  D  F  R  Q  Y  V  L  Q  E  Y  I  E  Q  K  R  V  I  N  C  G  S  R  I  G  *  *  S  K  Y  F  T  I  C  G  E  N  G  *  *  *  *  L  F  S  S  T  I  C  *  G  Y  A  Y  F  V  *  K  *  S  T  Y  W  R  S  R  *  N  *  K  S  M  S  L  C  K  *  C  L  A  D  I  *  L  L  C  N  V  V  V  I  F  F  L  K  *  D  L  T  R  D  A  Y  H  L  R  D  Q  L  V  V  A  F  V  L  L  Y  C  F  L  F  V  L  C  *  I  F  K  *  N  N  N  N  N  V  R  I  K  C  T  I  S  V   </second_frame>
            <third_frame>   I  K  K  N  K  Q  I  I  Q  I  D  L  S  Y  S  N  L  L  *  I  D  G  G  T  I  H  L  L  Y  N  Q  L  Q  S  L  L  S  H  T  T  S  F  F  I  H  E   : V  S  L  S  G  T  T  T  R  D  L  K  V  Q  Q  S  G  W  F  W  L  L  I  N  *  C  T  K  F  S  N  P  I  F  L  F  P  L  Q  S  S  N  *  C  T  I  P  K  P  F  A  T  I  *  I  E  L  L  G  H  F  I  K  Y  W  P  K  Y  N  T  S  L  H  I  K  D  M  A  N  C  S  R  F  L  L  L  L  L  P  L  L  L  H  I  H  N   : V  K  S  E  L  Q  L  N  Y  Y  T  K  S  C  P  R  A  E  D  I  I  K  E  Q  V  A  T  L  Y  H  K  H  G  N  T  A  V  S  W  I  R  N  L  F  H  D  C  M  V  K  :  S  C  D  A  S  L  Y  L  D  T  A  N  G  L  E  S  E  K  E  S  P  R  N  F  G  M  R  N  F  K  Y  I  E  T  I  K  Q  A  L  E  K  E  C  P  N  T  V  S  C  A  D  I  V  A  L  S  A  R  D  G  L  L  W  :  L  G  G  P  I  K  I  E  M  K  T  G  R  K  D  S  K  E  T  Y  F  S  E  V  E  K  Y  L  P  N  H  N  D  S  I  S  S  V  L  S  R  F  Q  S  I  G  V  D  T  E  G  T  V  A  L  L  G  N  Q  L  S  K  L  S  F  N  H  K  F  F  K  N  N  *  L  Y  K  I  M  F  I  L  I  E  K  F  M  *  S  S  F  L  G  P  V  W  M  D  L  A  L  K  K  Y  F  *  K  L  C  I  W  I  K  V  L  K  L  L  C  Q  T  *  K  W  K  N  G  R  K  R  C  *  S  Y  V  D  N  L  E  I  V  *  K  Y  *  G  Q  K  D  K  N  V  V  N  L  K  Q  L  I  S  *  K  K  S  T  P  T  P  A  F  N  F  W  L  K  I  S  F  F  F  *  L  K  I  S  Y  F  E  Y  C  Q  T  T  K  *  V  K  N  Q  F  L  S  Q  F  D  Q  L  L  S  *  T  K  Q  A  L  R  Q  *  F  F  L  L  R  I  S  T  *  I  V  D  I  I  S  L  R  Q  F  S  T  M  *  P  K  S  Q  I  Y  E  F  P  I  Y  A  L  W  L  K  K  *  L  F  I  *  I  S  F  F  I  I  L  I  E  K  N  H  L  E  S  I  V  R  N  S  C  N  L  Q  L  C  N  T  E  I  I  I  L  S  F  Y  V  S  P  L  K  Y  Q  T  S  L  T  *  V  T  N  P  L  T  F  P  I  I  F  K  H  *  K  T  Y  I  *  K  I  E  F  N  A  *  Y  L  S  T  N  T  *  L  S  F  V  S  F  G  K  K  I  G  A  H  S  V  G  R  V  H  C  V  N  L  V  H  R  L  Y  P  T  V  D  P  T  I  D  P  D  Y  A  K  Y  L  K  G  R  C  P  S  P  N  P  D  P  E  A  V  L  Y  S  R  F  D  R  E  T  T  M  I  L  D  N  M  Y  Y  K  N  I  L  N  K  K  G  L  L  I  V  D  Q  E  L  V  S  D  P  N  T  S  P  F  V  V  K  M  A  N  D  N  N  Y  F  H  Q  Q  F  A  R  A  M  L  I  L  S  E  N  N  P  L  I  G  D  Q  G  E  I  R  K  V  C  R  Y  V  N  S  A  *  R  I  F  N  C  Y  V  M  W  L  *  F  F  F  *  S  R  I  S  H  E  M  L  I  I  C  A  I  S  S  W  L  H  L  F  C  C  I  V  F  C  L  C  C  V  E  S  S  S  E  I  I  I  I  M  F  E  S  S  V  L  *  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30812" stop="30938"/>
                    <exon start="31619" stop="31767"/>
                    <exon start="32245" stop="32433"/>
                    <exon start="32933" stop="33154"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELLGHFIKYWPKYNTSLHIKDMANCSRFLLLLLPLLLHIHNVKSELQLNYYTKSCPRAEDIIKEQVATLYHKHGNTAVSWIRNLFHDCMVKSCDASLYLDTANGLESEKESPRNFGMRNFKYIETIKQALEKECPNTVSCADIVALSARDGLLWLGGPIKIEMKTGRKDSKETYFSEVEKYLPNHNDSISSVLSRFQSIGVDTEGTVALLGNQLSKLSFNHKFFKNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33965" stop="34402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFVSFGKKIGAHSVGRVHCVNLVHRLYPTVDPTIDPDYAKYLKGRCPSPNPDPEAVLYSRFDRETTMILDNMYYKNILNKKGLLIVDQELVSDPNTSPFVVKMANDNNYFHQQFARAMLILSENNPLIGDQGEIRKVCRYVNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28025" e_stop="28166"/>
            <exon e_start="30651" e_stop="30938"/>
            <exon e_start="31619" e_stop="31767"/>
            <exon e_start="32245" e_stop="32433"/>
            <exon e_start="32933" e_stop="33101"/>
            <exon e_start="33996" e_stop="34590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28025" e_stop="28166" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30651" e_stop="30938" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.810">
            <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31619" e_stop="31767" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32245" e_stop="32433" e_length="189"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32933" e_stop="33101" e_length="169"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.948">
            <gDNA_intron_boundary i_start="33102" i_stop="33995" i_length="894"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="33996" e_stop="34590" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28025" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
              <exon start="33996" stop="34590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28166"/>
              <exon start="30651" stop="30869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28029" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28130" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="32958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28131" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28134" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28134" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28136" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30845" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30845" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30853" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
              <exon start="33996" stop="34052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30853" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="32965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30861" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
              <exon start="33996" stop="34121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30861" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30895" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33996" stop="34581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34061" stop="34474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34066" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34246" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34247" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34291" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG : TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG : TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG : TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG : TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG : GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACTATAAGC</gDNA_template>
            <first_frame> F  I  K  K  N  K  Q  I  I  Q  I  D  L  S  Y  S  N  L  L  *  I  D  G  G  T  I  H  L  L  Y  N  Q  L  Q  S  L  L  S  H  T  T  S  F  F  I  H  E   : V  S  L  S  G  T  T  T  R  D  L  K  V  Q  Q  S  G  W  F  W  L  L  I  N  *  C  T  K  F  S  N  P  I  F  L  F  P  L  Q  S  S  N  *  C  T  I  P  K  P  F  A  T  I  *  I  E  L  L  G  H  F  I  K  Y  W  P  K  Y  N  T  S  L  H  I  K  D  M  A  N  C  S  R  F  L  L  L  L  L  P  L  L  L  H  I  H  N   : V  K  S  E  L  Q  L  N  Y  Y  T  K  S  C  P  R  A  E  D  I  I  K  E  Q  V  A  T  L  Y  H  K  H  G  N  T  A  V  S  W  I  R  N  L  F  H  D  C  M  V  K  :  S  C  D  A  S  L  Y  L  D  T  A  N  G  L  E  S  E  K  E  S  P  R  N  F  G  M  R  N  F  K  Y  I  E  T  I  K  Q  A  L  E  K  E  C  P  N  T  V  S  C  A  D  I  V  A  L  S  A  R  D  G  L  L  W  :  L  G  G  P  I  K  I  E  M  K  T  G  R  K  D  S  K  E  T  Y  F  S  E  V  E  K  Y  L  P  N  H  N  D  S  I  S  S  V  L  S  R  F  Q  S  I  G  V  D  T  E  G  T  V  A  L  L   : G  A  H  S  V  G  R  V  H  C  V  N  L  V  H  R  L  Y  P  T  V  D  P  T  I  D  P  D  Y  A  K  Y  L  K  G  R  C  P  S  P  N  P  D  P  E  A  V  L  Y  S  R  F  D  R  E  T  T  M  I  L  D  N  M  Y  Y  K  N  I  L  N  K  K  G  L  L  I  V  D  Q  E  L  V  S  D  P  N  T  S  P  F  V  V  K  M  A  N  D  N  N  Y  F  H  Q  Q  F  A  R  A  M  L  I  L  S  E  N  N  P  L  I  G  D  Q  G  E  I  R  K  V  C  R  Y  V  N  S  A  *  R  I  F  N  C  Y  V  M  W  L  *  F  F  F  *  S  R  I  S  H  E  M  L  I  I  C  A  I  S  S  W  L  H  L  F  C  C  I  V  F  C  L  C  C  V  E  S  S  S  E  I  I  I  I  M  F  E  S  S  V  L  *   </first_frame>
            <second_frame>  L  *  K  K  T  N  K  L  Y  K  L  T  *  A  I  P  I  F  Y  K  L  M  G  A  L  Y  I  F  C  I  I  N  F  K  V  Y  F  L  I  Q  H  L  F  S  F  M  K  :  F  H  *  V  G  L  Q  L  E  T  *  K  S  N  K  V  A  G  F  G  C  *  L  I  S  A  P  N  F  Q  I  Q  Y  S  F  F  H  F  K  V  Q  T  S  A  Q  F  Q  N  H  L  L  L  Y  K  L  S  F  W  D  I  S  S  N  I  G  Q  S  T  T  L  H  Y  T  S  K  T  W  P  I  V  Q  D  F  S  Y  C  Y  Y  L  Y  F  F  T  F  I  M  :  *  K  V  S  S  N  *  I  T  T  Q  R  V  A  Q  E  L  K  I  S  S  K  N  K  W  Q  H  C  T  T  N  M  G  T  Q  Q  F  L  G  L  E  I  F  F  M  I  A  W  L  S :   H  V  M  H  H  Y  I  W  T  Q  Q  M  G  *  N  Q  K  K  N  L  Q  G  I  L  G  *  G  I  L  S  I  L  R  Q  L  N  K  H  L  K  K  N  V  Q  I  P  F  L  V  Q  I  L  L  L  F  P  L  G  M  V  F  F  G :   *  E  G  Q  *  K  L  K  *  K  Q  E  G  K  I  A  R  K  L  T  F  Q  K  L  R  S  T  S  L  I  T  T  I  Q  S  H  L  C  F  Q  D  F  N  Q  L  V  L  I  L  K  E  L  L  L  Y  L  :  G  L  T  L  *  D  E  F  I  V  *  T  *  S  T  G  F  T  Q  P  W  T  P  L  S  I  P  T  T  Q  S  T  L  R  V  D  A  R  H  Q  T  L  T  R  R  L  F  Y  T  Q  D  L  I  A  K  L  Q  *  F  *  T  I  C  T  T  R  I  Y  *  T  K  K  G  Y  *  L  W  I  K  N  W  L  V  I  Q  I  L  H  H  L  W  *  K  W  L  M  I  I  I  I  F  I  N  N  L  L  G  L  C  L  F  C  L  K  I  I  H  L  L  E  I  K  V  K  L  E  K  Y  V  A  M  *  I  V  L  S  G  Y  L  I  V  M  *  C  G  C  N  F  F  F  K  V  G  S  H  T  R  C  L  S  S  A  R  S  A  R  G  C  I  C  F  V  V  L  F  F  V  C  V  V  L  N  L  Q  V  K  *  *  *  *  C  S  N  Q  V  Y  Y  K  </second_frame>
            <third_frame>   Y  K  K  K  Q  T  N  Y  T  N  *  P  K  L  F  Q  S  S  I  N  *  W  G  H  Y  T  S  F  V  *  S  T  S  K  S  T  F  S  Y  N  I  F  F  H  S  *  S :   F  I  E  W  D  Y  N  *  R  P  K  S  P  T  K  W  L  V  L  V  A  N  *  L  V  H  Q  I  F  K  S  N  I  P  F  S  T  S  K  F  K  L  V  H  N  S  K  T  I  C  Y  Y  I  N  *  A  F  G  T  F  H  Q  I  L  A  K  V  Q  H  F  I  T  H  Q  R  H  G  Q  L  F  K  I  S  L  I  V  I  T  S  T  S  S  H  S  *  C :   K  K  *  A  P  I  K  L  L  H  K  E  L  P  K  S  *  R  Y  H  Q  R  T  S  G  N  I  V  P  Q  T  W  E  H  S  S  F  L  D  *  K  S  F  S  *  L  H  G  *   : V  M  *  C  I  T  I  F  G  H  S  K  W  A  R  I  R  K  R  I  S  K  E  F  W  D  E  E  F  *  V  Y  *  D  N  *  T  S  T  *  K  R  M  S  K  Y  R  F  L  C  R  Y  C  C  S  F  R  *  G  W  S  S  L   : V  R  R  A  N  K  N  *  N  E  N  R  K  E  R  *  Q  G  N  L  L  F  R  S  *  E  V  P  P  *  S  Q  R  F  N  L  I  C  A  F  K  I  S  I  N  W  C  *  Y  *  R  N  C  C  S  T  W :   G  S  L  C  R  T  S  S  L  C  E  L  S  P  Q  A  L  P  N  R  G  P  H  Y  R  S  R  L  R  K  V  P  *  G  S  M  P  V  T  K  P  *  P  G  G  C  F  I  L  K  I  *  S  R  N  Y  N  D  F  R  Q  Y  V  L  Q  E  Y  I  E  Q  K  R  V  I  N  C  G  S  R  I  G  *  *  S  K  Y  F  T  I  C  G  E  N  G  *  *  *  *  L  F  S  S  T  I  C  *  G  Y  A  Y  F  V  *  K  *  S  T  Y  W  R  S  R  *  N  *  K  S  M  S  L  C  K  *  C  L  A  D  I  *  L  L  C  N  V  V  V  I  F  F  L  K  *  D  L  T  R  D  A  Y  H  L  R  D  Q  L  V  V  A  F  V  L  L  Y  C  F  L  F  V  L  C  *  I  F  K  *  N  N  N  N  N  V  R  I  K  C  T  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30812" stop="30938"/>
                    <exon start="31619" stop="31767"/>
                    <exon start="32245" stop="32433"/>
                    <exon start="32933" stop="33101"/>
                    <exon start="33996" stop="34402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELLGHFIKYWPKYNTSLHIKDMANCSRFLLLLLPLLLHIHNVKSELQLNYYTKSCPRAEDIIKEQVATLYHKHGNTAVSWIRNLFHDCMVKSCDASLYLDTANGLESEKESPRNFGMRNFKYIETIKQALEKECPNTVSCADIVALSARDGLLWLGGPIKIEMKTGRKDSKETYFSEVEKYLPNHNDSISSVLSRFQSIGVDTEGTVALLGAHSVGRVHCVNLVHRLYPTVDPTIDPDYAKYLKGRCPSPNPDPEAVLYSRFDRETTMILDNMYYKNILNKKGLLIVDQELVSDPNTSPFVVKMANDNNYFHQQFARAMLILSENNPLIGDQGEIRKVCRYVNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="31457" e_stop="31767"/>
            <exon e_start="32245" e_stop="32433"/>
            <exon e_start="32933" e_stop="34595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31457" e_stop="31767" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31768" i_stop="32244" i_length="477"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32245" e_stop="32433" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32434" i_stop="32932" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32933" e_stop="34595" e_length="1663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31457" stop="31767"/>
              <exon start="32245" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31475" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31619" stop="31767"/>
              <exon start="32245" stop="32433"/>
              <exon start="32933" stop="33101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32933" stop="33498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32933" stop="33472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33930" stop="34595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33996" stop="34581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34061" stop="34474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34066" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34246" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34247" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34291" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAGAACTTTTTTCTAAATATGAAAGAACAAGTTCTTTCTTTCGCTTCTTTCGAATGCATACCTCAATTAATTTAACAAAATACTTATTATATTTCATCAGTATAAATATCGAGCAACTCTTCATCTATGTATTAACTGTTGAGTCTTAATTAACTGCAGTAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG : TCATGTGATGCATCACTATATTTGGACACAGCAAATGGGCTAGAATCAGAAAAAGAATCTCCAAGGAATTTTGGGATGAGGAATTTTAAGTATATTGAGACAATTAAACAAGCACTTGAAAAAGAATGTCCAAATACCGTTTCTTGTGCAGATATTGTTGCTCTTTCCGCTAGGGATGGTCTTCTTTGG : TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTGGTAATCAACTCTCTAAACTCTCGTTTAATCATAAATTTTTTAAAAATAATTAATTATACAAAATTATGTTTATTTTGATCGAAAAATTCATGTAGAGTTCATTCTTAGGGCCCGTTTGGATGGACTTAGCTTTAAAAAAGTACTTTTAAAAGTTATGCATTTGGATAAAAGTGTTGAAGTTGCTATGCCAAACGTGAAAATGGAAAAATGGAAGAAAGAGATGTTAGAGTTATGTGGATAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAACTAAATAAGTCAAAAATCAGTTTTTAAGTCAGTTTGATCAGCTTTTAAGCTGAACTAAACAAGCTCTTAGACAATAATTTTTTCTTTTACGTATCTCCACTTAAATAGTAGACATTATAAGTTTGAGGCAGTTCTCAACCATGTAACCTAAGTCACAAATTTATGAGTTTCCAATTTATGCACTTTGGTTAAAAAAATAACTATTCATATAAATTTCTTTTTTTATTATTTTAATCGAAAAAAATCATCTAGAGTCGATTGTTAGAAATAGTTGCAACTTGCAACTATGTAACACAGAGATAATAATTTTGTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCAATTATATTTAAGCACTAGAAAACTTATATATAAAAAATCGAATTTAACGCTTAATATTTATCAACTAACACCTAATTGTCTTTTGTTTCATTTGGAAAAAAAATAGGGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACTATAAGCGTGTT</gDNA_template>
            <first_frame> N  *  N  F  F  L  N  M  K  E  Q  V  L  S  F  A  S  F  E  C  I  P  Q  L  I  *  Q  N  T  Y  Y  I  S  S  V  *  I  S  S  N  S  S  S  M  Y  *  L  L  S  L  N  *  L  Q  *  K  V  S  S  N  *  I  T  T  Q  R  V  A  Q  E  L  K  I  S  S  K  N  K  W  Q  H  C  T  T  N  M  G  T  Q  Q  F  L  G  L  E  I  F  F  M  I  A  W  L  S :   H  V  M  H  H  Y  I  W  T  Q  Q  M  G  *  N  Q  K  K  N  L  Q  G  I  L  G  *  G  I  L  S  I  L  R  Q  L  N  K  H  L  K  K  N  V  Q  I  P  F  L  V  Q  I  L  L  L  F  P  L  G  M  V  F  F  G :   *  E  G  Q  *  K  L  K  *  K  Q  E  G  K  I  A  R  K  L  T  F  Q  K  L  R  S  T  S  L  I  T  T  I  Q  S  H  L  C  F  Q  D  F  N  Q  L  V  L  I  L  K  E  L  L  L  Y  L  V  I  N  S  L  N  S  R  L  I  I  N  F  L  K  I  I  N  Y  T  K  L  C  L  F  *  S  K  N  S  C  R  V  H  S  *  G  P  F  G  W  T  *  L  *  K  S  T  F  K  S  Y  A  F  G  *  K  C  *  S  C  Y  A  K  R  E  N  G  K  M  E  E  R  D  V  R  V  M  W  I  I  W  R  L  Y  K  N  I  K  G  K  K  I  K  M  W  S  T  *  N  S  L  *  A  K  K  K  A  P  L  P  Q  L  L  T  F  G  L  K  *  V  F  F  F  N  L  K  *  V  I  L  S  I  A  K  Q  L  N  K  S  K  I  S  F  *  V  S  L  I  S  F  *  A  E  L  N  K  L  L  D  N  N  F  F  F  Y  V  S  P  L  K  *  *  T  L  *  V  *  G  S  S  Q  P  C  N  L  S  H  K  F  M  S  F  Q  F  M  H  F  G  *  K  N  N  Y  S  Y  K  F  L  F  L  L  F  *  S  K  K  I  I  *  S  R  L  L  E  I  V  A  T  C  N  Y  V  T  Q  R  *  *  F  C  L  F  T  Y  L  H  L  N  T  R  H  H  *  L  K  S  Q  T  P  *  P  S  Q  L  Y  L  S  T  R  K  L  I  Y  K  K  S  N  L  T  L  N  I  Y  Q  L  T  P  N  C  L  L  F  H  L  E  K  K  *  G  L  T  L  *  D  E  F  I  V  *  T  *  S  T  G  F  T  Q  P  W  T  P  L  S  I  P  T  T  Q  S  T  L  R  V  D  A  R  H  Q  T  L  T  R  R  L  F  Y  T  Q  D  L  I  A  K  L  Q  *  F  *  T  I  C  T  T  R  I  Y  *  T  K  K  G  Y  *  L  W  I  K  N  W  L  V  I  Q  I  L  H  H  L  W  *  K  W  L  M  I  I  I  I  F  I  N  N  L  L  G  L  C  L  F  C  L  K  I  I  H  L  L  E  I  K  V  K  L  E  K  Y  V  A  M  *  I  V  L  S  G  Y  L  I  V  M  *  C  G  C  N  F  F  F  K  V  G  S  H  T  R  C  L  S  S  A  R  S  A  R  G  C  I  C  F  V  V  L  F  F  V  C  V  V  L  N  L  Q  V  K  *  *  *  *  C  S  N  Q  V  Y  Y  K  R  V </first_frame>
            <second_frame>  I  R  T  F  F  *  I  *  K  N  K  F  F  L  S  L  L  S  N  A  Y  L  N  *  F  N  K  I  L  I  I  F  H  Q  Y  K  Y  R  A  T  L  H  L  C  I  N  C  *  V  L  I  N  C  S  K  K  *  A  P  I  K  L  L  H  K  E  L  P  K  S  *  R  Y  H  Q  R  T  S  G  N  I  V  P  Q  T  W  E  H  S  S  F  L  D  *  K  S  F  S  *  L  H  G  *   : V  M  *  C  I  T  I  F  G  H  S  K  W  A  R  I  R  K  R  I  S  K  E  F  W  D  E  E  F  *  V  Y  *  D  N  *  T  S  T  *  K  R  M  S  K  Y  R  F  L  C  R  Y  C  C  S  F  R  *  G  W  S  S  L   : V  R  R  A  N  K  N  *  N  E  N  R  K  E  R  *  Q  G  N  L  L  F  R  S  *  E  V  P  P  *  S  Q  R  F  N  L  I  C  A  F  K  I  S  I  N  W  C  *  Y  *  R  N  C  C  S  T  W  *  S  T  L  *  T  L  V  *  S  *  I  F  *  K  *  L  I  I  Q  N  Y  V  Y  F  D  R  K  I  H  V  E  F  I  L  R  A  R  L  D  G  L  S  F  K  K  V  L  L  K  V  M  H  L  D  K  S  V  E  V  A  M  P  N  V  K  M  E  K  W  K  K  E  M  L  E  L  C  G  *  F  G  D  C  I  K  I  L  R  A  K  R  *  K  C  G  Q  L  K  T  A  Y  K  L  K  K  K  H  P  Y  P  S  F  *  L  L  A  *  N  K  F  F  F  L  T  *  N  K  L  F  *  V  L  P  N  N  *  I  S  Q  K  S  V  F  K  S  V  *  S  A  F  K  L  N  *  T  S  S  *  T  I  I  F  S  F  T  Y  L  H  L  N  S  R  H  Y  K  F  E  A  V  L  N  H  V  T  *  V  T  N  L  *  V  S  N  L  C  T  L  V  K  K  I  T  I  H  I  N  F  F  F  Y  Y  F  N  R  K  K  S  S  R  V  D  C  *  K  *  L  Q  L  A  T  M  *  H  R  D  N  N  F  V  F  L  R  I  S  T  *  I  P  D  I  T  N  L  S  H  K  P  L  D  L  P  N  Y  I  *  A  L  E  N  L  Y  I  K  N  R  I  *  R  L  I  F  I  N  *  H  L  I  V  F  C  F  I  W  K  K  N  R  G  S  L  C  R  T  S  S  L  C  E  L  S  P  Q  A  L  P  N  R  G  P  H  Y  R  S  R  L  R  K  V  P  *  G  S  M  P  V  T  K  P  *  P  G  G  C  F  I  L  K  I  *  S  R  N  Y  N  D  F  R  Q  Y  V  L  Q  E  Y  I  E  Q  K  R  V  I  N  C  G  S  R  I  G  *  *  S  K  Y  F  T  I  C  G  E  N  G  *  *  *  *  L  F  S  S  T  I  C  *  G  Y  A  Y  F  V  *  K  *  S  T  Y  W  R  S  R  *  N  *  K  S  M  S  L  C  K  *  C  L  A  D  I  *  L  L  C  N  V  V  V  I  F  F  L  K  *  D  L  T  R  D  A  Y  H  L  R  D  Q  L  V  V  A  F  V  L  L  Y  C  F  L  F  V  L  C  *  I  F  K  *  N  N  N  N  N  V  R  I  K  C  T  I  S  V   </second_frame>
            <third_frame>   L  E  L  F  S  K  Y  E  R  T  S  S  F  F  R  F  F  R  M  H  T  S  I  N  L  T  K  Y  L  L  Y  F  I  S  I  N  I  E  Q  L  F  I  Y  V  L  T  V  E  S  *  L  T  A  V  K  S  E  L  Q  L  N  Y  Y  T  K  S  C  P  R  A  E  D  I  I  K  E  Q  V  A  T  L  Y  H  K  H  G  N  T  A  V  S  W  I  R  N  L  F  H  D  C  M  V  K  :  S  C  D  A  S  L  Y  L  D  T  A  N  G  L  E  S  E  K  E  S  P  R  N  F  G  M  R  N  F  K  Y  I  E  T  I  K  Q  A  L  E  K  E  C  P  N  T  V  S  C  A  D  I  V  A  L  S  A  R  D  G  L  L  W  :  L  G  G  P  I  K  I  E  M  K  T  G  R  K  D  S  K  E  T  Y  F  S  E  V  E  K  Y  L  P  N  H  N  D  S  I  S  S  V  L  S  R  F  Q  S  I  G  V  D  T  E  G  T  V  A  L  L  G  N  Q  L  S  K  L  S  F  N  H  K  F  F  K  N  N  *  L  Y  K  I  M  F  I  L  I  E  K  F  M  *  S  S  F  L  G  P  V  W  M  D  L  A  L  K  K  Y  F  *  K  L  C  I  W  I  K  V  L  K  L  L  C  Q  T  *  K  W  K  N  G  R  K  R  C  *  S  Y  V  D  N  L  E  I  V  *  K  Y  *  G  Q  K  D  K  N  V  V  N  L  K  Q  L  I  S  *  K  K  S  T  P  T  P  A  F  N  F  W  L  K  I  S  F  F  F  *  L  K  I  S  Y  F  E  Y  C  Q  T  T  K  *  V  K  N  Q  F  L  S  Q  F  D  Q  L  L  S  *  T  K  Q  A  L  R  Q  *  F  F  L  L  R  I  S  T  *  I  V  D  I  I  S  L  R  Q  F  S  T  M  *  P  K  S  Q  I  Y  E  F  P  I  Y  A  L  W  L  K  K  *  L  F  I  *  I  S  F  F  I  I  L  I  E  K  N  H  L  E  S  I  V  R  N  S  C  N  L  Q  L  C  N  T  E  I  I  I  L  S  F  Y  V  S  P  L  K  Y  Q  T  S  L  T  *  V  T  N  P  L  T  F  P  I  I  F  K  H  *  K  T  Y  I  *  K  I  E  F  N  A  *  Y  L  S  T  N  T  *  L  S  F  V  S  F  G  K  K  I  G  A  H  S  V  G  R  V  H  C  V  N  L  V  H  R  L  Y  P  T  V  D  P  T  I  D  P  D  Y  A  K  Y  L  K  G  R  C  P  S  P  N  P  D  P  E  A  V  L  Y  S  R  F  D  R  E  T  T  M  I  L  D  N  M  Y  Y  K  N  I  L  N  K  K  G  L  L  I  V  D  Q  E  L  V  S  D  P  N  T  S  P  F  V  V  K  M  A  N  D  N  N  Y  F  H  Q  Q  F  A  R  A  M  L  I  L  S  E  N  N  P  L  I  G  D  Q  G  E  I  R  K  V  C  R  Y  V  N  S  A  *  R  I  F  N  C  Y  V  M  W  L  *  F  F  F  *  S  R  I  S  H  E  M  L  I  I  C  A  I  S  S  W  L  H  L  F  C  C  I  V  F  C  L  C  C  V  E  S  S  S  E  I  I  I  I  M  F  E  S  S  V  L  *  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31609" stop="31767"/>
                    <exon start="32245" stop="32433"/>
                    <exon start="32933" stop="33154"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTAVKSELQLNYYTKSCPRAEDIIKEQVATLYHKHGNTAVSWIRNLFHDCMVKSCDASLYLDTANGLESEKESPRNFGMRNFKYIETIKQALEKECPNTVSCADIVALSARDGLLWLGGPIKIEMKTGRKDSKETYFSEVEKYLPNHNDSISSVLSRFQSIGVDTEGTVALLGNQLSKLSFNHKFFKNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33965" stop="34402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFVSFGKKIGAHSVGRVHCVNLVHRLYPTVDPTIDPDYAKYLKGRCPSPNPDPEAVLYSRFDRETTMILDNMYYKNILNKKGLLIVDQELVSDPNTSPFVVKMANDNNYFHQQFARAMLILSENNPLIGDQGEIRKVCRYVNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28026" e_stop="28166"/>
            <exon e_start="30651" e_stop="30938"/>
            <exon e_start="31619" e_stop="31767"/>
            <exon e_start="32933" e_stop="33101"/>
            <exon e_start="33996" e_stop="34584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28026" e_stop="28166" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="28167" i_stop="30650" i_length="2484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30651" e_stop="30938" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.810">
            <gDNA_intron_boundary i_start="30939" i_stop="31618" i_length="680"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31619" e_stop="31767" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31768" i_stop="32932" i_length="1165"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32933" e_stop="33101" e_length="169"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.948">
            <gDNA_intron_boundary i_start="33102" i_stop="33995" i_length="894"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="33996" e_stop="34584" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28026" stop="28166"/>
              <exon start="30651" stop="30869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28029" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28134" stop="28166"/>
              <exon start="30651" stop="30938"/>
              <exon start="31619" stop="31767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30938"/>
              <exon start="31619" stop="31767"/>
              <exon start="32933" stop="33101"/>
              <exon start="33996" stop="34074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33996" stop="34581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34061" stop="34474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34066" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34246" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34247" stop="34584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34291" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATAAAAAAAAACAAACAAATTATACAAATTGACCTAAGCTATTCCAATCTTCTATAAATTGATGGGGGCACTATACATCTTTTGTATAATCAACTTCAAAGTCTACTTTCTCATACAACATCTTTTTTCATTCATGAAG : TTTCATTGAGTGGGACTACAACTAGAGACCTAAAAGTCCAACAAAGTGGCTGGTTTTGGTTGCTAATTAATTAGTGCACCAAATTTTCAAATCCAATATTCCTTTTTCCACTTCAAAGTTCAAACTAGTGCACAATTCCAAAACCATTTGCTACTATATAAATTGAGCTTTTGGGACATTTCATCAAATATTGGCCAAAGTACAACACTTCATTACACATCAAAGACATGGCCAATTGTTCAAGATTTCTCTTATTGTTATTACCTCTACTTCTTCACATTCATAATG : TAAAAAGTGAGCTCCAATTAAATTACTACACAAAGAGTTGCCCAAGAGCTGAAGATATCATCAAAGAACAAGTGGCAACATTGTACCACAAACATGGGAACACAGCAGTTTCTTGGATTAGAAATCTTTTTCATGATTGCATGGTTAAG : TTAGGAGGGCCAATAAAAATTGAAATGAAAACAGGAAGGAAAGATAGCAAGGAAACTTACTTTTCAGAAGTTGAGAAGTACCTCCCTAATCACAACGATTCAATCTCATCTGTGCTTTCAAGATTTCAATCAATTGGTGTTGATACTGAAGGAACTGTTGCTCTACTTG : GGGCTCACTCTGTAGGACGAGTTCATTGTGTGAACTTAGTCCACAGGCTTTACCCAACCGTGGACCCCACTATCGATCCCGACTACGCAAAGTACCTTAAGGGTCGATGCCCGTCACCAAACCCTGACCCGGAGGCTGTTTTATACTCAAGATTTGATCGCGAAACTACAATGATTTTAGACAATATGTACTACAAGAATATATTGAACAAAAAAGGGTTATTAATTGTGGATCAAGAATTGGTTAGTGATCCAAATACTTCACCATTTGTGGTGAAAATGGCTAATGATAATAATTATTTTCATCAACAATTTGCTAGGGCTATGCTTATTTTGTCTGAAAATAATCCACTTATTGGAGATCAAGGTGAAATTAGAAAAGTATGTCGCTATGTAAATAGTGCTTAGCGGATATTTAATTGTTATGTAATGTGGTTGTAATTTTTTTTTTAAAGTAGGATCTCACACGAGATGCTTATCATCTGCGCGATCAGCTCGTGGTTGCATTTGTTTTGTTGTATTGTTTTTTGTTTGTGTTGTGTTGAATCTTCAAGTGAAATAATAATAATAATGTTCGAATCAAGTGTACT</gDNA_template>
            <first_frame> L  *  K  K  T  N  K  L  Y  K  L  T  *  A  I  P  I  F  Y  K  L  M  G  A  L  Y  I  F  C  I  I  N  F  K  V  Y  F  L  I  Q  H  L  F  S  F  M  K  :  F  H  *  V  G  L  Q  L  E  T  *  K  S  N  K  V  A  G  F  G  C  *  L  I  S  A  P  N  F  Q  I  Q  Y  S  F  F  H  F  K  V  Q  T  S  A  Q  F  Q  N  H  L  L  L  Y  K  L  S  F  W  D  I  S  S  N  I  G  Q  S  T  T  L  H  Y  T  S  K  T  W  P  I  V  Q  D  F  S  Y  C  Y  Y  L  Y  F  F  T  F  I  M  :  *  K  V  S  S  N  *  I  T  T  Q  R  V  A  Q  E  L  K  I  S  S  K  N  K  W  Q  H  C  T  T  N  M  G  T  Q  Q  F  L  G  L  E  I  F  F  M  I  A  W  L  S :   *  E  G  Q  *  K  L  K  *  K  Q  E  G  K  I  A  R  K  L  T  F  Q  K  L  R  S  T  S  L  I  T  T  I  Q  S  H  L  C  F  Q  D  F  N  Q  L  V  L  I  L  K  E  L  L  L  Y  L  :  G  L  T  L  *  D  E  F  I  V  *  T  *  S  T  G  F  T  Q  P  W  T  P  L  S  I  P  T  T  Q  S  T  L  R  V  D  A  R  H  Q  T  L  T  R  R  L  F  Y  T  Q  D  L  I  A  K  L  Q  *  F  *  T  I  C  T  T  R  I  Y  *  T  K  K  G  Y  *  L  W  I  K  N  W  L  V  I  Q  I  L  H  H  L  W  *  K  W  L  M  I  I  I  I  F  I  N  N  L  L  G  L  C  L  F  C  L  K  I  I  H  L  L  E  I  K  V  K  L  E  K  Y  V  A  M  *  I  V  L  S  G  Y  L  I  V  M  *  C  G  C  N  F  F  F  K  V  G  S  H  T  R  C  L  S  S  A  R  S  A  R  G  C  I  C  F  V  V  L  F  F  V  C  V  V  L  N  L  Q  V  K  *  *  *  *  C  S  N  Q  V  Y  </first_frame>
            <second_frame>  Y  K  K  K  Q  T  N  Y  T  N  *  P  K  L  F  Q  S  S  I  N  *  W  G  H  Y  T  S  F  V  *  S  T  S  K  S  T  F  S  Y  N  I  F  F  H  S  *  S :   F  I  E  W  D  Y  N  *  R  P  K  S  P  T  K  W  L  V  L  V  A  N  *  L  V  H  Q  I  F  K  S  N  I  P  F  S  T  S  K  F  K  L  V  H  N  S  K  T  I  C  Y  Y  I  N  *  A  F  G  T  F  H  Q  I  L  A  K  V  Q  H  F  I  T  H  Q  R  H  G  Q  L  F  K  I  S  L  I  V  I  T  S  T  S  S  H  S  *  C :   K  K  *  A  P  I  K  L  L  H  K  E  L  P  K  S  *  R  Y  H  Q  R  T  S  G  N  I  V  P  Q  T  W  E  H  S  S  F  L  D  *  K  S  F  S  *  L  H  G  *   : V  R  R  A  N  K  N  *  N  E  N  R  K  E  R  *  Q  G  N  L  L  F  R  S  *  E  V  P  P  *  S  Q  R  F  N  L  I  C  A  F  K  I  S  I  N  W  C  *  Y  *  R  N  C  C  S  T  W :   G  S  L  C  R  T  S  S  L  C  E  L  S  P  Q  A  L  P  N  R  G  P  H  Y  R  S  R  L  R  K  V  P  *  G  S  M  P  V  T  K  P  *  P  G  G  C  F  I  L  K  I  *  S  R  N  Y  N  D  F  R  Q  Y  V  L  Q  E  Y  I  E  Q  K  R  V  I  N  C  G  S  R  I  G  *  *  S  K  Y  F  T  I  C  G  E  N  G  *  *  *  *  L  F  S  S  T  I  C  *  G  Y  A  Y  F  V  *  K  *  S  T  Y  W  R  S  R  *  N  *  K  S  M  S  L  C  K  *  C  L  A  D  I  *  L  L  C  N  V  V  V  I  F  F  L  K  *  D  L  T  R  D  A  Y  H  L  R  D  Q  L  V  V  A  F  V  L  L  Y  C  F  L  F  V  L  C  *  I  F  K  *  N  N  N  N  N  V  R  I  K  C  T </second_frame>
            <third_frame>   I  K  K  N  K  Q  I  I  Q  I  D  L  S  Y  S  N  L  L  *  I  D  G  G  T  I  H  L  L  Y  N  Q  L  Q  S  L  L  S  H  T  T  S  F  F  I  H  E   : V  S  L  S  G  T  T  T  R  D  L  K  V  Q  Q  S  G  W  F  W  L  L  I  N  *  C  T  K  F  S  N  P  I  F  L  F  P  L  Q  S  S  N  *  C  T  I  P  K  P  F  A  T  I  *  I  E  L  L  G  H  F  I  K  Y  W  P  K  Y  N  T  S  L  H  I  K  D  M  A  N  C  S  R  F  L  L  L  L  L  P  L  L  L  H  I  H  N   : V  K  S  E  L  Q  L  N  Y  Y  T  K  S  C  P  R  A  E  D  I  I  K  E  Q  V  A  T  L  Y  H  K  H  G  N  T  A  V  S  W  I  R  N  L  F  H  D  C  M  V  K  :  L  G  G  P  I  K  I  E  M  K  T  G  R  K  D  S  K  E  T  Y  F  S  E  V  E  K  Y  L  P  N  H  N  D  S  I  S  S  V  L  S  R  F  Q  S  I  G  V  D  T  E  G  T  V  A  L  L   : G  A  H  S  V  G  R  V  H  C  V  N  L  V  H  R  L  Y  P  T  V  D  P  T  I  D  P  D  Y  A  K  Y  L  K  G  R  C  P  S  P  N  P  D  P  E  A  V  L  Y  S  R  F  D  R  E  T  T  M  I  L  D  N  M  Y  Y  K  N  I  L  N  K  K  G  L  L  I  V  D  Q  E  L  V  S  D  P  N  T  S  P  F  V  V  K  M  A  N  D  N  N  Y  F  H  Q  Q  F  A  R  A  M  L  I  L  S  E  N  N  P  L  I  G  D  Q  G  E  I  R  K  V  C  R  Y  V  N  S  A  *  R  I  F  N  C  Y  V  M  W  L  *  F  F  F  *  S  R  I  S  H  E  M  L  I  I  C  A  I  S  S  W  L  H  L  F  C  C  I  V  F  C  L  C  C  V  E  S  S  S  E  I  I  I  I  M  F  E  S  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30812" stop="30938"/>
                    <exon start="31619" stop="31767"/>
                    <exon start="32933" stop="33101"/>
                    <exon start="33996" stop="34402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELLGHFIKYWPKYNTSLHIKDMANCSRFLLLLLPLLLHIHNVKSELQLNYYTKSCPRAEDIIKEQVATLYHKHGNTAVSWIRNLFHDCMVKLGGPIKIEMKTGRKDSKETYFSEVEKYLPNHNDSISSVLSRFQSIGVDTEGTVALLGAHSVGRVHCVNLVHRLYPTVDPTIDPDYAKYLKGRCPSPNPDPEAVLYSRFDRETTMILDNMYYKNILNKKGLLIVDQELVSDPNTSPFVVKMANDNNYFHQQFARAMLILSENNPLIGDQGEIRKVCRYVNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="35360" PGL_stop="34046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35360" e_stop="35329"/>
            <exon e_start="34577" e_stop="34046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="35360" e_stop="35329" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35328" i_stop="34578" i_length="751"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="34577" e_stop="34046" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35360" stop="35329"/>
              <exon start="34577" stop="34080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34574" stop="34046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAATTAGGTGTCTATGCTCATGTATAGTTG : TTGATTCGAACATTATTATTATTATTTCACTTGAAGATTCAACACAACACAAACAAAAAACAATACAACAAAACAAATGCAACCACGAGCTGATCGCGCAGATGATAAGCATCTCGTGTGAGATCCTACTTTAAAAAAAAAATTACAACCACATTACATAACAATTAAATATCCGCTAAGCACTATTTACATAGCGACATACTTTTCTAATTTCACCTTGATCTCCAATAAGTGGATTATTTTCAGACAAAATAAGCATAGCCCTAGCAAATTGTTGATGAAAATAATTATTATCATTAGCCATTTTCACCACAAATGGTGAAGTATTTGGATCACTAACCAATTCTTGATCCACAATTAATAACCCTTTTTTGTTCAATATATTCTTGTAGTACATATTGTCTAAAATCATTGTAGTTTCGCGATCAAATCTTGAGTATAAAACAGCCTCCGGGTCAGGGTTTGGTGACGGGCATCGACCCTTAAGGTACTTTGCGTAGTCGGGATCGATAGTGGGGTCCACGGTTGGGTA</gDNA_template>
            <first_frame> H  N  *  V  S  M  L  M  Y  S  C :   *  F  E  H  Y  Y  Y  Y  F  T  *  R  F  N  T  T  Q  T  K  N  N  T  T  K  Q  M  Q  P  R  A  D  R  A  D  D  K  H  L  V  *  D  P  T  L  K  K  K  L  Q  P  H  Y  I  T  I  K  Y  P  L  S  T  I  Y  I  A  T  Y  F  S  N  F  T  L  I  S  N  K  W  I  I  F  R  Q  N  K  H  S  P  S  K  L  L  M  K  I  I  I  I  I  S  H  F  H  H  K  W  *  S  I  W  I  T  N  Q  F  L  I  H  N  *  *  P  F  F  V  Q  Y  I  L  V  V  H  I  V  *  N  H  C  S  F  A  I  K  S  *  V  *  N  S  L  R  V  R  V  W  *  R  A  S  T  L  K  V  L  C  V  V  G  I  D  S  G  V  H  G  W  V </first_frame>
            <second_frame>  T  I  R  C  L  C  S  C  I  V   : V  D  S  N  I  I  I  I  I  S  L  E  D  S  T  Q  H  K  Q  K  T  I  Q  Q  N  K  C  N  H  E  L  I  A  Q  M  I  S  I  S  C  E  I  L  L  *  K  K  N  Y  N  H  I  T  *  Q  L  N  I  R  *  A  L  F  T  *  R  H  T  F  L  I  S  P  *  S  P  I  S  G  L  F  S  D  K  I  S  I  A  L  A  N  C  *  *  K  *  L  L  S  L  A  I  F  T  T  N  G  E  V  F  G  S  L  T  N  S  *  S  T  I  N  N  P  F  L  F  N  I  F  L  *  Y  I  L  S  K  I  I  V  V  S  R  S  N  L  E  Y  K  T  A  S  G  S  G  F  G  D  G  H  R  P  L  R  Y  F  A  *  S  G  S  I  V  G  S  T  V  G   </second_frame>
            <third_frame>   Q  L  G  V  Y  A  H  V  *  L  :  L  I  R  T  L  L  L  L  F  H  L  K  I  Q  H  N  T  N  K  K  Q  Y  N  K  T  N  A  T  T  S  *  S  R  R  *  *  A  S  R  V  R  S  Y  F  K  K  K  I  T  T  T  L  H  N  N  *  I  S  A  K  H  Y  L  H  S  D  I  L  F  *  F  H  L  D  L  Q  *  V  D  Y  F  Q  T  K  *  A  *  P  *  Q  I  V  D  E  N  N  Y  Y  H  *  P  F  S  P  Q  M  V  K  Y  L  D  H  *  P  I  L  D  P  Q  L  I  T  L  F  C  S  I  Y  S  C  S  T  Y  C  L  K  S  L  *  F  R  D  Q  I  L  S  I  K  Q  P  P  G  Q  G  L  V  T  G  I  D  P  *  G  T  L  R  S  R  D  R  *  W  G  P  R  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34456" stop="34256"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPTLKKKLQPHYITIKYPLSTIYIATYFSNFTLISNKWIIFRQNKHSPSKLLMKIIIIISHFHHKW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="48009" PGL_stop="47402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48009" e_stop="47402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="48009" e_stop="47402" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48009" stop="47402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47982" stop="47459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTATCATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTCATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATCGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTATATCTTAAAAAATGTTGTTTATATTTTTCAATTTCCGTTATGGTTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTAAATCAACTAATTTCTAGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAACTTCAAAACGCAAATGTAGAATCTTTGTGTACTCATGAAGATCTTGAAAAAGATGACGAAGATCGGATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> S  Y  H  S  L  S  Y  L  S  F  Q  I  V  N  S  L  S  H  L  I  F  S  L  S  H  G  Y  L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  V  V  F  L  I  Q  N  R  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  Y  L  K  K  C  C  L  Y  F  S  I  S  V  M  V  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  L  I  S  S  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  S  A  A  K  M  R  E  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  N  F  K  T  Q  M  *  N  L  C  V  L  M  K  I  L  K  K  M  T  K  I  G  *  L  S  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </first_frame>
            <second_frame>  L  I  I  L  S  H  I  Y  L  F  K  L  L  I  L  S  P  I  *  F  F  L  S  L  M  V  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  Y  I  L  K  N  V  V  Y  I  F  Q  F  P  L  W  F  T  L  Q  W  L  N  P  R  G  L  L  E  V  F  I  *  I  N  *  F  L  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  P  L  L  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  S  S  T  S  K  R  K  C  R  I  F  V  Y  S  *  R  S  *  K  R  *  R  R  S  D  S  C  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </second_frame>
            <third_frame>   L  S  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  S  W  L  S  F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  A  I  Y  F  G  C  F  F  N  P  K  S  N  Q  Q  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  I  S  *  K  M  L  F  I  F  F  N  F  R  Y  G  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  S  K  S  T  N  F  *  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  R  C  *  N  E  G  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  P  Q  L  Q  N  A  N  V  E  S  L  C  T  H  E  D  L  E  K  D  D  E  D  R  I  V  V  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0067J16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49913" PGL_stop="52506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49913" e_stop="50031"/>
            <exon e_start="52060" e_stop="52506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49913" e_stop="50031" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.939">
            <gDNA_intron_boundary i_start="50032" i_stop="52059" i_length="2028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52060" e_stop="52506" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49913" stop="50031"/>
              <exon start="52060" stop="52490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49913" stop="50031"/>
              <exon start="52060" stop="52487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49913" stop="50031"/>
              <exon start="52060" stop="52460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49913" stop="50031"/>
              <exon start="52060" stop="52440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49914" stop="50031"/>
              <exon start="52060" stop="52491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49990" stop="50031"/>
              <exon start="52060" stop="52506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCATTTTACTCCTCCGTCTCTTACTCGACGGTATCGCCTTCTCCGTCGATCGGCGTTTGAAAATTCGATTTGTTTCTCCGATTTCAAGCCATGGATTTCGAAGATCATGATAACGTG : AAGAATATGGCTAAGGACGTTGAAGTGAAAGGATTCAACCCAGGATTAATTGTTTTAATAGTTGTCGGTGGGCTTCTGTTGACATTCCTTGTTGGGAACTACTTGCTTTACATGTATGCACAGAAAACCCTTCCTCCAAAGAAAAAGAAGCCAGTTTCCAAGAAGAAGATGAAGAAGGAAAGACTGAAGCAAGGTGTTTCCGCACCTGGAGAATAGATGCCCTAGACACACTGCGGTTAATTCCCTTGTTCATCTCGTGGAAACTATGTGAGTTCATATTTAGTGCCCCGTTGTCAAACAGATGGTTGGACTTGTTATCATTTTCAATTTCCCGTCATCATAGTTAGAGCTCTCAACTTAGAACTTGTTAATGTGTAGAATTTTCCCCTCTTATTTTCATGTTAGCTGCTGGAGAAGTTGTTCTGCAAGCTACTGATTTCTCTATTC</gDNA_template>
            <first_frame> V  H  F  T  P  P  S  L  T  R  R  Y  R  L  L  R  R  S  A  F  E  N  S  I  C  F  S  D  F  K  P  W  I  S  K  I  M  I  T  * :   R  I  W  L  R  T  L  K  *  K  D  S  T  Q  D  *  L  F  *  *  L  S  V  G  F  C  *  H  S  L  L  G  T  T  C  F  T  C  M  H  R  K  P  F  L  Q  R  K  R  S  Q  F  P  R  R  R  *  R  R  K  D  *  S  K  V  F  P  H  L  E  N  R  C  P  R  H  T  A  V  N  S  L  V  H  L  V  E  T  M  *  V  H  I  *  C  P  V  V  K  Q  M  V  G  L  V  I  I  F  N  F  P  S  S  *  L  E  L  S  T  *  N  L  L  M  C  R  I  F  P  S  Y  F  H  V  S  C  W  R  S  C  S  A  S  Y  *  F  L  Y   </first_frame>
            <second_frame>  F  I  L  L  L  R  L  L  L  D  G  I  A  F  S  V  D  R  R  L  K  I  R  F  V  S  P  I  S  S  H  G  F  R  R  S  *  *  R   : E  E  Y  G  *  G  R  *  S  E  R  I  Q  P  R  I  N  C  F  N  S  C  R  W  A  S  V  D  I  P  C  W  E  L  L  A  L  H  V  C  T  E  N  P  S  S  K  E  K  E  A  S  F  Q  E  E  D  E  E  G  K  T  E  A  R  C  F  R  T  W  R  I  D  A  L  D  T  L  R  L  I  P  L  F  I  S  W  K  L  C  E  F  I  F  S  A  P  L  S  N  R  W  L  D  L  L  S  F  S  I  S  R  H  H  S  *  S  S  Q  L  R  T  C  *  C  V  E  F  S  P  L  I  F  M  L  A  A  G  E  V  V  L  Q  A  T  D  F  S  I  </second_frame>
            <third_frame>   S  F  Y  S  S  V  S  Y  S  T  V  S  P  S  P  S  I  G  V  *  K  F  D  L  F  L  R  F  Q  A  M  D  F  E  D  H  D  N  V  :  K  N  M  A  K  D  V  E  V  K  G  F  N  P  G  L  I  V  L  I  V  V  G  G  L  L  L  T  F  L  V  G  N  Y  L  L  Y  M  Y  A  Q  K  T  L  P  P  K  K  K  K  P  V  S  K  K  K  M  K  K  E  R  L  K  Q  G  V  S  A  P  G  E  *  M  P  *  T  H  C  G  *  F  P  C  S  S  R  G  N  Y  V  S  S  Y  L  V  P  R  C  Q  T  D  G  W  T  C  Y  H  F  Q  F  P  V  I  I  V  R  A  L  N  L  E  L  V  N  V  *  N  F  P  L  L  F  S  C  *  L  L  E  K  L  F  C  K  L  L  I  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52083" stop="52406"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SERIQPRINCFNSCRWASVDIPCWELLALHVCTENPSSKEKEASFQEEDEEGKTEARCFRTWRIDALDTLRLIPLFISWKLCEFIFSAPLSNRWLDLLSFSISRHHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49975" stop="50031"/>
                    <exon start="52060" stop="52275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFDLFLRFQAMDFEDHDNVKNMAKDVEVKGFNPGLIVLIVVGGLLLTFLVGNYLLYMYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83261" PGL_stop="79995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83261" e_stop="82841"/>
            <exon e_start="81592" e_stop="81390"/>
            <exon e_start="80477" e_stop="79995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.558" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83261" e_stop="82841" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.558" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82840" i_stop="81593" i_length="1248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81592" e_stop="81390" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81389" i_stop="80478" i_length="912"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="80477" e_stop="79995" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83261" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83243" stop="82841"/>
              <exon start="81592" stop="81427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83236" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83235" stop="82841"/>
              <exon start="81592" stop="81430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83235" stop="82841"/>
              <exon start="81592" stop="81545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83192" stop="82841"/>
              <exon start="81592" stop="81427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83157" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83150" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83150" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83150" stop="82841"/>
              <exon start="81592" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83147" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83147" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83145" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83108" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83108" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83054" stop="82841"/>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81592" stop="81390"/>
              <exon start="80477" stop="80078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81418" stop="81390"/>
              <exon start="80477" stop="79995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80456" stop="80063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80428" stop="80115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTAAGAAAACTTAGCAGTATTGACAAAGGACCAATTCCACACGTATTTACACAGCATTATACATAGCACAAATTTCTTCACCAATCTTTCAAAATTCCTCAAAAATCTTCTTGATTTCATCAAAATCCCAATGGCAAATACCGATGAATCGAACCCACTTTTACCCAATCAACAATCTGAGGTGAAAGATGAGAAGAATCCCAATAAACCCATTTCTTCAACAACCCCAGTTCCACCGTTTCCGGCGGATCCGGTGAAGCCTTTATCAGCCGTTGTTCCGATGGGATGGACAGTTGAAGGGGTCCCCATGGGTCATGGAGTTGTCGTTGATCCGATTATGAATAGGGCTCAGTGGGATTCTGGACTTTGTGCTTGTTTTGGAAGGACTGATGAGTTCTGCAGCAGTGATATTGAAGTTT : GTTTACTAGGTAGCATGGCCCCATGCGTGCTCTACGGGAGCAATGCTGAGAGACTTGGTTCTGCTCCAGGGACTTTTGCCAATCACTGCTTGCCTTACACTGGCCTCTTCCTAATTGGACAATCCTTCTTTGGCTCGAACTGTGTGGCACCTTGCTTTACATATCCCAGTCGTACAGCTATCCGCCGGAAGTTCAATCTTGAG : GGGAGCTGTGAGGCCTTCAACAGGTCTAGTGGGTGCTGCGGGAGCTTTATTGAGGACGAGGTGCAACGCGAGCAATGTGAGTCAGTTTGTGACTTTGCAACTCATTTCTTCTGCCACCCTTGTGCTCTTTGCCAAGAAGGTCGTGAGCTTCGTCGCAGGCTTCCTCATCCTGGCTTTAAGGCCCAACAAGTGCTCGTTATGATCCCCCCTAACGAGCAAACCATGGGCCGCTAAGCAAGATTATTTCGATGAGGAGTCCAAGCCATTTCCTTCTTGGTTTGATTTGTATCCATTTTCTTAAAGCTTCTGAATGCTCGACTTTTTTTTTTATAGTTTTGCCAGTTATGTAAAACTTGAAGACCTATATGTGTTGTGTTTATAATGTGTATGTGCATAAAAGACATGGATTCTGCTAATAATATATGGGCTTAAGTCATATGCGGCCCCTTGAAGTTGTCCGCATATTTCACTTAGACACCTTAA</gDNA_template>
            <first_frame> N  *  E  N  L  A  V  L  T  K  D  Q  F  H  T  Y  L  H  S  I  I  H  S  T  N  F  F  T  N  L  S  K  F  L  K  N  L  L  D  F  I  K  I  P  M  A  N  T  D  E  S  N  P  L  L  P  N  Q  Q  S  E  V  K  D  E  K  N  P  N  K  P  I  S  S  T  T  P  V  P  P  F  P  A  D  P  V  K  P  L  S  A  V  V  P  M  G  W  T  V  E  G  V  P  M  G  H  G  V  V  V  D  P  I  M  N  R  A  Q  W  D  S  G  L  C  A  C  F  G  R  T  D  E  F  C  S  S  D  I  E  V   : C  L  L  G  S  M  A  P  C  V  L  Y  G  S  N  A  E  R  L  G  S  A  P  G  T  F  A  N  H  C  L  P  Y  T  G  L  F  L  I  G  Q  S  F  F  G  S  N  C  V  A  P  C  F  T  Y  P  S  R  T  A  I  R  R  K  F  N  L  E  :  G  S  C  E  A  F  N  R  S  S  G  C  C  G  S  F  I  E  D  E  V  Q  R  E  Q  C  E  S  V  C  D  F  A  T  H  F  F  C  H  P  C  A  L  C  Q  E  G  R  E  L  R  R  R  L  P  H  P  G  F  K  A  Q  Q  V  L  V  M  I  P  P  N  E  Q  T  M  G  R  *  A  R  L  F  R  *  G  V  Q  A  I  S  F  L  V  *  F  V  S  I  F  L  K  L  L  N  A  R  L  F  F  L  *  F  C  Q  L  C  K  T  *  R  P  I  C  V  V  F  I  M  C  M  C  I  K  D  M  D  S  A  N  N  I  W  A  *  V  I  C  G  P  L  K  L  S  A  Y  F  T  *  T  P  * </first_frame>
            <second_frame>  I  K  K  T  *  Q  Y  *  Q  R  T  N  S  T  R  I  Y  T  A  L  Y  I  A  Q  I  S  S  P  I  F  Q  N  S  S  K  I  F  L  I  S  S  K  S  Q  W  Q  I  P  M  N  R  T  H  F  Y  P  I  N  N  L  R  *  K  M  R  R  I  P  I  N  P  F  L  Q  Q  P  Q  F  H  R  F  R  R  I  R  *  S  L  Y  Q  P  L  F  R  W  D  G  Q  L  K  G  S  P  W  V  M  E  L  S  L  I  R  L  *  I  G  L  S  G  I  L  D  F  V  L  V  L  E  G  L  M  S  S  A  A  V  I  L  K  F  :  V  Y  *  V  A  W  P  H  A  C  S  T  G  A  M  L  R  D  L  V  L  L  Q  G  L  L  P  I  T  A  C  L  T  L  A  S  S  *  L  D  N  P  S  L  A  R  T  V  W  H  L  A  L  H  I  P  V  V  Q  L  S  A  G  S  S  I  L  R :   G  A  V  R  P  S  T  G  L  V  G  A  A  G  A  L  L  R  T  R  C  N  A  S  N  V  S  Q  F  V  T  L  Q  L  I  S  S  A  T  L  V  L  F  A  K  K  V  V  S  F  V  A  G  F  L  I  L  A  L  R  P  N  K  C  S  L  *  S  P  L  T  S  K  P  W  A  A  K  Q  D  Y  F  D  E  E  S  K  P  F  P  S  W  F  D  L  Y  P  F  S  *  S  F  *  M  L  D  F  F  F  Y  S  F  A  S  Y  V  K  L  E  D  L  Y  V  L  C  L  *  C  V  C  A  *  K  T  W  I  L  L  I  I  Y  G  L  K  S  Y  A  A  P  *  S  C  P  H  I  S  L  R  H  L   </second_frame>
            <third_frame>   L  R  K  L  S  S  I  D  K  G  P  I  P  H  V  F  T  Q  H  Y  T  *  H  K  F  L  H  Q  S  F  K  I  P  Q  K  S  S  *  F  H  Q  N  P  N  G  K  Y  R  *  I  E  P  T  F  T  Q  S  T  I  *  G  E  R  *  E  E  S  Q  *  T  H  F  F  N  N  P  S  S  T  V  S  G  G  S  G  E  A  F  I  S  R  C  S  D  G  M  D  S  *  R  G  P  H  G  S  W  S  C  R  *  S  D  Y  E  *  G  S  V  G  F  W  T  L  C  L  F  W  K  D  *  *  V  L  Q  Q  *  Y  *  S  L :   F  T  R  *  H  G  P  M  R  A  L  R  E  Q  C  *  E  T  W  F  C  S  R  D  F  C  Q  S  L  L  A  L  H  W  P  L  P  N  W  T  I  L  L  W  L  E  L  C  G  T  L  L  Y  I  S  Q  S  Y  S  Y  P  P  E  V  Q  S  *   : G  E  L  *  G  L  Q  Q  V  *  W  V  L  R  E  L  Y  *  G  R  G  A  T  R  A  M  *  V  S  L  *  L  C  N  S  F  L  L  P  P  L  C  S  L  P  R  R  S  *  A  S  S  Q  A  S  S  S  W  L  *  G  P  T  S  A  R  Y  D  P  P  *  R  A  N  H  G  P  L  S  K  I  I  S  M  R  S  P  S  H  F  L  L  G  L  I  C  I  H  F  L  K  A  S  E  C  S  T  F  F  F  I  V  L  P  V  M  *  N  L  K  T  Y  M  C  C  V  Y  N  V  Y  V  H  K  R  H  G  F  C  *  *  Y  M  G  L  S  H  M  R  P  L  E  V  V  R  I  F  H  L  D  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83255" stop="82841"/>
                    <exon start="81592" stop="81390"/>
                    <exon start="80477" stop="80244"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENLAVLTKDQFHTYLHSIIHSTNFFTNLSKFLKNLLDFIKIPMANTDESNPLLPNQQSEVKDEKNPNKPISSTTPVPPFPADPVKPLSAVVPMGWTVEGVPMGHGVVVDPIMNRAQWDSGLCACFGRTDEFCSSDIEVCLLGSMAPCVLYGSNAERLGSAPGTFANHCLPYTGLFLIGQSFFGSNCVAPCFTYPSRTAIRRKFNLEGSCEAFNRSSGCCGSFIEDEVQREQCESVCDFATHFFCHPCALCQEGRELRRRLPHPGFKAQQVLVMIPPNEQTMGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="86844" PGL_stop="84894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86844" e_stop="86672"/>
            <exon e_start="86118" e_stop="85958"/>
            <exon e_start="85151" e_stop="84894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86844" e_stop="86672" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86671" i_stop="86119" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86118" e_stop="85958" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="85957" i_stop="85152" i_length="806"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85151" e_stop="84894" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86844" stop="86672"/>
              <exon start="86118" stop="85958"/>
              <exon start="85151" stop="84900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86843" stop="86672"/>
              <exon start="86118" stop="85958"/>
              <exon start="85151" stop="85075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86117" stop="85958"/>
              <exon start="85151" stop="84894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCCCAATGAGTACTTATAATAATTCTCATTAGCAAATTTCATCACTCTTTTAGCATAAAATAAAACATATATATACATTCTTGATCAAGATCTTGATCTTTACCATGAAGCTTAAGTGTAACTTCATTGTCATCTTCTTCCTTCTCCTCCTCGCCTCGCCTTCCTCAG : GAAAAATGGATTTATCAAAAGTGAATGCCTCAGAAATTTATGAAATTGATTATAGAGGACCAGAAACTCATACTAAAATGCCTCCACAAAGAGTAGGAAGACATAATAATCATCATCGAGGCACGTTGTTTCATCCCAATGCTACTAAGCCTGGAAAAAAT : GGGAAGAAAAACCATGGATGATGTAGTAATAGTTTAATATAATTATAATTAATGGTGTGATTTTTAGATTTATATGGGCAAAGAGTGCGTGTCCTTATTTTTATGAAGCAATCGAAAATATATATGTTTGAACTTCTTTATTATATAGTTTACTTTCATGTAATAATATAGAGTATGTAATTAATTTCCAAATGCTTTGAGATTGATTTTACTTTTATATTATGATATATATATCTACTAAAGTTTGTGTCTTAATAA</gDNA_template>
            <first_frame> F  F  P  N  E  Y  L  *  *  F  S  L  A  N  F  I  T  L  L  A  *  N  K  T  Y  I  Y  I  L  D  Q  D  L  D  L  Y  H  E  A  *  V  *  L  H  C  H  L  L  P  S  P  P  R  L  A  F  L  R :   K  N  G  F  I  K  S  E  C  L  R  N  L  *  N  *  L  *  R  T  R  N  S  Y  *  N  A  S  T  K  S  R  K  T  *  *  S  S  S  R  H  V  V  S  S  Q  C  Y  *  A  W  K  K   : W  E  E  K  P  W  M  M  *  *  *  F  N  I  I  I  I  N  G  V  I  F  R  F  I  W  A  K  S  A  C  P  Y  F  Y  E  A  I  E  N  I  Y  V  *  T  S  L  L  Y  S  L  L  S  C  N  N  I  E  Y  V  I  N  F  Q  M  L  *  D  *  F  Y  F  Y  I  M  I  Y  I  S  T  K  V  C  V  L  I  </first_frame>
            <second_frame>  F  S  P  M  S  T  Y  N  N  S  H  *  Q  I  S  S  L  F  *  H  K  I  K  H  I  Y  T  F  L  I  K  I  L  I  F  T  M  K  L  K  C  N  F  I  V  I  F  F  L  L  L  L  A  S  P  S  S   : G  K  M  D  L  S  K  V  N  A  S  E  I  Y  E  I  D  Y  R  G  P  E  T  H  T  K  M  P  P  Q  R  V  G  R  H  N  N  H  H  R  G  T  L  F  H  P  N  A  T  K  P  G  K  N  :  G  K  K  N  H  G  *  C  S  N  S  L  I  *  L  *  L  M  V  *  F  L  D  L  Y  G  Q  R  V  R  V  L  I  F  M  K  Q  S  K  I  Y  M  F  E  L  L  Y  Y  I  V  Y  F  H  V  I  I  *  S  M  *  L  I  S  K  C  F  E  I  D  F  T  F  I  L  *  Y  I  Y  L  L  K  F  V  S  *  * </second_frame>
            <third_frame>   F  P  Q  *  V  L  I  I  I  L  I  S  K  F  H  H  S  F  S  I  K  *  N  I  Y  I  H  S  *  S  R  S  *  S  L  P  *  S  L  S  V  T  S  L  S  S  S  S  F  S  S  S  P  R  L  P  Q  :  E  K  W  I  Y  Q  K  *  M  P  Q  K  F  M  K  L  I  I  E  D  Q  K  L  I  L  K  C  L  H  K  E  *  E  D  I  I  I  I  I  E  A  R  C  F  I  P  M  L  L  S  L  E  K  M :   G  R  K  T  M  D  D  V  V  I  V  *  Y  N  Y  N  *  W  C  D  F  *  I  Y  M  G  K  E  C  V  S  L  F  L  *  S  N  R  K  Y  I  C  L  N  F  F  I  I  *  F  T  F  M  *  *  Y  R  V  C  N  *  F  P  N  A  L  R  L  I  L  L  L  Y  Y  D  I  Y  I  Y  *  S  L  C  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86786" stop="86672"/>
                    <exon start="86118" stop="85958"/>
                    <exon start="85151" stop="85131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKIKHIYTFLIKILIFTMKLKCNFIVIFFLLLLASPSSGKMDLSKVNASEIYEIDYRGPETHTKMPPQRVGRHNNHHRGTLFHPNATKPGKNGKKNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="120965" PGL_stop="107337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120965" e_stop="120097"/>
            <exon e_start="107722" e_stop="107689"/>
            <exon e_start="107572" e_stop="107337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.863" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="120965" e_stop="120097" e_length="869"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120096" i_stop="107723" i_length="12374"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107722" e_stop="107689" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.986">
            <gDNA_intron_boundary i_start="107688" i_stop="107573" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="107572" e_stop="107337" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120965" stop="120166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120961" stop="120097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120960" stop="120522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120960" stop="120522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120960" stop="120522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120921" stop="120197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120398" stop="120097"/>
              <exon start="107722" stop="107689"/>
              <exon start="107572" stop="107337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCTTCCTTGTGTAGTCTTTCCCACATTTCTGGCTCCTTCAACAACTCACAACATCTGCCCCCCTTTTCACCGTTCTTGATTTCACTTCAATTCTCAATAATCTTTAAAAGGGTGTTCCCTCAGTGGTTTTTACTCTTCCCCACATCACAGATCTGACTAAAAATTCAATCTTTTTCAATGTCTCATCATCCATTGAAAGCAGTGACACTTACCCATGTTAGATACCGAAAGGGGGATCAATTAGGCCATTTTTTGGCTTGGGTTTCATTGGTTCCTGTATTTATAAGCCTTGGTGGTTTCATTTCTCACTTTATCTTTCGTAGAGAGCTTCAAGGTATGTTCTTTGCAATTGGGCTTATCATCTCTCAGTTTATCAATGAAATTATAAAGAAATCTGTTCAGCAAGCCCGACCCGAAACTTGTGCACTTCTTGAAATGTGTGATTCTCATGGATGGCCTTCTAGTCATTCCCAGTATATGTTTTTCTTTGCTGTGTATGTTACTCTATTGACTTATAAGAGATTGGGGCTAATTTTTAGAAATCAGTTGTTGGTTGCTGTTGTTTTGGTTTGGCCAATGGCGGTTTTGACGATGTATTCGAGGGTGTATTTGGGTTATCATACGGTTGCACAGGTGTTTGCTGGTGCTGCTTTGGGAACTGTGCTTGGTGGGGGTTGGTTTTGGATTGTTAACAATGTGCTCAGTTGTTTGTTTCCTGCTATTGAAGAGAGTGCTTTTGGGAGGTTCTTTTATGTTAAGGATACTTCTCATATTCCTAATGTTTTGAGATTTGAGTATGAGAATGCAAGGTCTGCGAAGAAACACCCGTCCTACAAGCGTGCTGATTGATTACTCGTTGTTCACTG : TACAAGGGGAGTCTTCAATATGTTCCAGAATGAG : ATATTTCGAAAGAGTGAAACTTGATGTTGAACCAGCTTGATCAACTCGGATTTGATGGTTTGGAGGTTCACTTACTTCTTAGACGTTTGTCGCTACTTCCTTTACTTGGACAACTTTATAGTTTTGATCTGATATTTATGTTTTAACTGTTTGTAAATGGATCAAGAAGGAAAAGGTATAACAGGTAGTTACAAAGTTATAGTGTACTTGCTCCTACACTCTTTGCAAGTTCTGAG</gDNA_template>
            <first_frame> L  P  S  L  C  S  L  S  H  I  S  G  S  F  N  N  S  Q  H  L  P  P  F  S  P  F  L  I  S  L  Q  F  S  I  I  F  K  R  V  F  P  Q  W  F  L  L  F  P  T  S  Q  I  *  L  K  I  Q  S  F  S  M  S  H  H  P  L  K  A  V  T  L  T  H  V  R  Y  R  K  G  D  Q  L  G  H  F  L  A  W  V  S  L  V  P  V  F  I  S  L  G  G  F  I  S  H  F  I  F  R  R  E  L  Q  G  M  F  F  A  I  G  L  I  I  S  Q  F  I  N  E  I  I  K  K  S  V  Q  Q  A  R  P  E  T  C  A  L  L  E  M  C  D  S  H  G  W  P  S  S  H  S  Q  Y  M  F  F  F  A  V  Y  V  T  L  L  T  Y  K  R  L  G  L  I  F  R  N  Q  L  L  V  A  V  V  L  V  W  P  M  A  V  L  T  M  Y  S  R  V  Y  L  G  Y  H  T  V  A  Q  V  F  A  G  A  A  L  G  T  V  L  G  G  G  W  F  W  I  V  N  N  V  L  S  C  L  F  P  A  I  E  E  S  A  F  G  R  F  F  Y  V  K  D  T  S  H  I  P  N  V  L  R  F  E  Y  E  N  A  R  S  A  K  K  H  P  S  Y  K  R  A  D  *  L  L  V  V  H  C :   T  R  G  V  F  N  M  F  Q  N  E  :  I  F  R  K  S  E  T  *  C  *  T  S  L  I  N  S  D  L  M  V  W  R  F  T  Y  F  L  D  V  C  R  Y  F  L  Y  L  D  N  F  I  V  L  I  *  Y  L  C  F  N  C  L  *  M  D  Q  E  G  K  G  I  T  G  S  Y  K  V  I  V  Y  L  L  L  H  S  L  Q  V  L   </first_frame>
            <second_frame>  F  L  P  C  V  V  F  P  T  F  L  A  P  S  T  T  H  N  I  C  P  P  F  H  R  S  *  F  H  F  N  S  Q  *  S  L  K  G  C  S  L  S  G  F  Y  S  S  P  H  H  R  S  D  *  K  F  N  L  F  Q  C  L  I  I  H  *  K  Q  *  H  L  P  M  L  D  T  E  R  G  I  N  *  A  I  F  W  L  G  F  H  W  F  L  Y  L  *  A  L  V  V  S  F  L  T  L  S  F  V  E  S  F  K  V  C  S  L  Q  L  G  L  S  S  L  S  L  S  M  K  L  *  R  N  L  F  S  K  P  D  P  K  L  V  H  F  L  K  C  V  I  L  M  D  G  L  L  V  I  P  S  I  C  F  S  L  L  C  M  L  L  Y  *  L  I  R  D  W  G  *  F  L  E  I  S  C  W  L  L  L  F  W  F  G  Q  W  R  F  *  R  C  I  R  G  C  I  W  V  I  I  R  L  H  R  C  L  L  V  L  L  W  E  L  C  L  V  G  V  G  F  G  L  L  T  M  C  S  V  V  C  F  L  L  L  K  R  V  L  L  G  G  S  F  M  L  R  I  L  L  I  F  L  M  F  *  D  L  S  M  R  M  Q  G  L  R  R  N  T  R  P  T  S  V  L  I  D  Y  S  L  F  T   : V  Q  G  E  S  S  I  C  S  R  M  R :   Y  F  E  R  V  K  L  D  V  E  P  A  *  S  T  R  I  *  W  F  G  G  S  L  T  S  *  T  F  V  A  T  S  F  T  W  T  T  L  *  F  *  S  D  I  Y  V  L  T  V  C  K  W  I  K  K  E  K  V  *  Q  V  V  T  K  L  *  C  T  C  S  Y  T  L  C  K  F  *  </second_frame>
            <third_frame>   S  F  L  V  *  S  F  P  H  F  W  L  L  Q  Q  L  T  T  S  A  P  L  F  T  V  L  D  F  T  S  I  L  N  N  L  *  K  G  V  P  S  V  V  F  T  L  P  H  I  T  D  L  T  K  N  S  I  F  F  N  V  S  S  S  I  E  S  S  D  T  Y  P  C  *  I  P  K  G  G  S  I  R  P  F  F  G  L  G  F  I  G  S  C  I  Y  K  P  W  W  F  H  F  S  L  Y  L  S  *  R  A  S  R  Y  V  L  C  N  W  A  Y  H  L  S  V  Y  Q  *  N  Y  K  E  I  C  S  A  S  P  T  R  N  L  C  T  S  *  N  V  *  F  S  W  M  A  F  *  S  F  P  V  Y  V  F  L  C  C  V  C  Y  S  I  D  L  *  E  I  G  A  N  F  *  K  S  V  V  G  C  C  C  F  G  L  A  N  G  G  F  D  D  V  F  E  G  V  F  G  L  S  Y  G  C  T  G  V  C  W  C  C  F  G  N  C  A  W  W  G  L  V  L  D  C  *  Q  C  A  Q  L  F  V  S  C  Y  *  R  E  C  F  W  E  V  L  L  C  *  G  Y  F  S  Y  S  *  C  F  E  I  *  V  *  E  C  K  V  C  E  E  T  P  V  L  Q  A  C  *  L  I  T  R  C  S  L  :  Y  K  G  S  L  Q  Y  V  P  E  *   : D  I  S  K  E  *  N  L  M  L  N  Q  L  D  Q  L  G  F  D  G  L  E  V  H  L  L  L  R  R  L  S  L  L  P  L  L  G  Q  L  Y  S  F  D  L  I  F  M  F  *  L  F  V  N  G  S  R  R  K  R  Y  N  R  *  L  Q  S  Y  S  V  L  A  P  T  L  F  A  S  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120806" stop="120114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKIQSFSMSHHPLKAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFISHFIFRRELQGMFFAIGLIISQFINEIIKKSVQQARPETCALLEMCDSHGWPSSHSQYMFFFAVYVTLLTYKRLGLIFRNQLLVAVVLVWPMAVLTMYSRVYLGYHTVAQVFAGAALGTVLGGGWFWIVNNVLSCLFPAIEESAFGRFFYVKDTSHIPNVLRFEYENARSAKKHPSYKRAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="124174" PGL_stop="127879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124174" e_stop="124203"/>
            <exon e_start="124298" e_stop="124378"/>
            <exon e_start="124466" e_stop="124695"/>
            <exon e_start="125413" e_stop="125607"/>
            <exon e_start="125792" e_stop="125882"/>
            <exon e_start="126931" e_stop="127053"/>
            <exon e_start="127232" e_stop="127382"/>
            <exon e_start="127510" e_stop="127879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124174" e_stop="124203" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124204" i_stop="124297" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124298" e_stop="124378" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.960">
            <gDNA_intron_boundary i_start="124379" i_stop="124465" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124466" e_stop="124695" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.904" acc_prob="0.911">
            <gDNA_intron_boundary i_start="124696" i_stop="125412" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125413" e_stop="125607" e_length="195"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.984">
            <gDNA_intron_boundary i_start="125608" i_stop="125791" i_length="184"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125792" e_stop="125882" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="125883" i_stop="126930" i_length="1048"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="126931" e_stop="127053" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="127054" i_stop="127231" i_length="178"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="127232" e_stop="127382" e_length="151"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="127383" i_stop="127509" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="127510" e_stop="127879" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124174" stop="124203"/>
              <exon start="124298" stop="124378"/>
              <exon start="124466" stop="124695"/>
              <exon start="125413" stop="125607"/>
              <exon start="125792" stop="125882"/>
              <exon start="126931" stop="127053"/>
              <exon start="127232" stop="127295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124175" stop="124203"/>
              <exon start="124298" stop="124378"/>
              <exon start="124466" stop="124695"/>
              <exon start="125413" stop="125587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124588" stop="124695"/>
              <exon start="125413" stop="125607"/>
              <exon start="125792" stop="125882"/>
              <exon start="126931" stop="127053"/>
              <exon start="127232" stop="127382"/>
              <exon start="127510" stop="127644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125526" stop="125607"/>
              <exon start="125792" stop="125882"/>
              <exon start="126931" stop="127053"/>
              <exon start="127232" stop="127345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126931" stop="127053"/>
              <exon start="127232" stop="127382"/>
              <exon start="127510" stop="127879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127031" stop="127053"/>
              <exon start="127232" stop="127382"/>
              <exon start="127510" stop="127832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGGCAGACTATTCCAGTCCTCTTATCT : GGGCGTGAATGCTTTGCTTGTGCACCTACTGGTTCTGGCAAAACATTTGCTTTTGTTTTTCCTGTACTTATGAAACTCAAG : CACACTTCAAAGGATGGTGTCCGAGCTGTAATTCTTTCCCCTACAAAAGAGTTAGCTGCTCAGACAACAAGAGAATGCAAAAAGTTGGCCAGGAAGAAGTTCTACATCAGGTTGATGACTAAACAACTCGCTAAAAGTGGGGACTTTTCTAAACTGCGATGTGATGTACTGATCTCGACACCATTGCGCCTAAAGTTTGCTATCCAAAAAAGAAAGCTTGATTTAAGTAG : GGTTGAATATCTTGTCTTAGATGAATCTGATAAGCTTTTCGAGCCTGGCATGCTAGAGCAGGTTGATTTTGTGGTGAAGGCGTGCACAAATCCTTCAATTCTTCGGTCATTGTTCAGTGCTACTTTACCCGATATAGTTGAAGACCGAGCACGTACAATAATGCATGATGCTGTTCGAGTAATTATTGGTAGGAA : AAATTCAGCTTCTGAAACAATAGAGCAAAAACTGGTATATGTTGGGAGTGAAGAAGGGAAGCTTCTGGCTCTTCGTCAAAGCTTTGCAGAG : AGTTTAAACCCACCAGTGCTAGTATTCGTTCAAAACAAGGAGCGTGCCAAGGAGCTATATGACGAGTTAAAATTGGAAGATATTCGAGCAGATGTTATCCATTCAGACCTTTCTCAGATACAG : AGAGAAAATGCTATCGATAACTTTAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTGTTGCCCGGGGTATGGATTTCAAAGGGGTCAACTGCGTGATAAATTATGATTTCCCAGACGCTGCTGCAGCATATATTCACAGAATTG : GACGTTCTGGCAGAGCAGGAAGGAGTGGACAGGCGATAACATTTTATACTGAAGCAGATATTCCCTTTTTGAGGAACATCGCAAATGTTATTACGTCTTCTGGTGGTGAGGTTCCGGAGTGGATCATGTCTCTGACCAAGAAAAAGTGGAGGAAACACAGGCCGCGAAGAGAAACCATTTCAACTCAGCCAGACATATGAACCATCCCTCATAGTTTTGAGCACAATATCAAGTTTTTTGAACTTTTCTTTTTATACAACATTAATGTATGATTCAACTTGTAATTTATGTTAAGTATGAGTTTGGAATGTTCACTTAAATGATAGAGAAATGAATGTTGTCTTTTTTTTTTGAAAAGAAACTCTTTTTA</gDNA_template>
            <first_frame> Q  R  Q  T  I  P  V  L  L  S  :  G  R  E  C  F  A  C  A  P  T  G  S  G  K  T  F  A  F  V  F  P  V  L  M  K  L  K  :  H  T  S  K  D  G  V  R  A  V  I  L  S  P  T  K  E  L  A  A  Q  T  T  R  E  C  K  K  L  A  R  K  K  F  Y  I  R  L  M  T  K  Q  L  A  K  S  G  D  F  S  K  L  R  C  D  V  L  I  S  T  P  L  R  L  K  F  A  I  Q  K  R  K  L  D  L  S  R :   V  E  Y  L  V  L  D  E  S  D  K  L  F  E  P  G  M  L  E  Q  V  D  F  V  V  K  A  C  T  N  P  S  I  L  R  S  L  F  S  A  T  L  P  D  I  V  E  D  R  A  R  T  I  M  H  D  A  V  R  V  I  I  G  R  K :   N  S  A  S  E  T  I  E  Q  K  L  V  Y  V  G  S  E  E  G  K  L  L  A  L  R  Q  S  F  A  E  :  S  L  N  P  P  V  L  V  F  V  Q  N  K  E  R  A  K  E  L  Y  D  E  L  K  L  E  D  I  R  A  D  V  I  H  S  D  L  S  Q  I  Q  :  R  E  N  A  I  D  N  F  R  A  G  K  T  W  V  L  I  A  T  D  V  V  A  R  G  M  D  F  K  G  V  N  C  V  I  N  Y  D  F  P  D  A  A  A  A  Y  I  H  R  I   : G  R  S  G  R  A  G  R  S  G  Q  A  I  T  F  Y  T  E  A  D  I  P  F  L  R  N  I  A  N  V  I  T  S  S  G  G  E  V  P  E  W  I  M  S  L  T  K  K  K  W  R  K  H  R  P  R  R  E  T  I  S  T  Q  P  D  I  *  T  I  P  H  S  F  E  H  N  I  K  F  F  E  L  F  F  L  Y  N  I  N  V  *  F  N  L  *  F  M  L  S  M  S  L  E  C  S  L  K  *  *  R  N  E  C  C  L  F  F  L  K  R  N  S  F   </first_frame>
            <second_frame>  K  G  R  L  F  Q  S  S  Y  L :   G  V  N  A  L  L  V  H  L  L  V  L  A  K  H  L  L  L  F  F  L  Y  L  *  N  S  S :   T  L  Q  R  M  V  S  E  L  *  F  F  P  L  Q  K  S  *  L  L  R  Q  Q  E  N  A  K  S  W  P  G  R  S  S  T  S  G  *  *  L  N  N  S  L  K  V  G  T  F  L  N  C  D  V  M  Y  *  S  R  H  H  C  A  *  S  L  L  S  K  K  E  S  L  I  *  V   : G  L  N  I  L  S  *  M  N  L  I  S  F  S  S  L  A  C  *  S  R  L  I  L  W  *  R  R  A  Q  I  L  Q  F  F  G  H  C  S  V  L  L  Y  P  I  *  L  K  T  E  H  V  Q  *  C  M  M  L  F  E  *  L  L  V  G   : K  I  Q  L  L  K  Q  *  S  K  N  W  Y  M  L  G  V  K  K  G  S  F  W  L  F  V  K  A  L  Q  R :   V  *  T  H  Q  C  *  Y  S  F  K  T  R  S  V  P  R  S  Y  M  T  S  *  N  W  K  I  F  E  Q  M  L  S  I  Q  T  F  L  R  Y  R :   E  K  M  L  S  I  T  L  E  L  E  K  H  G  F  *  L  P  L  M  L  L  P  G  V  W  I  S  K  G  S  T  A  *  *  I  M  I  S  Q  T  L  L  Q  H  I  F  T  E  L  :  D  V  L  A  E  Q  E  G  V  D  R  R  *  H  F  I  L  K  Q  I  F  P  F  *  G  T  S  Q  M  L  L  R  L  L  V  V  R  F  R  S  G  S  C  L  *  P  R  K  S  G  G  N  T  G  R  E  E  K  P  F  Q  L  S  Q  T  Y  E  P  S  L  I  V  L  S  T  I  S  S  F  L  N  F  S  F  Y  T  T  L  M  Y  D  S  T  C  N  L  C  *  V  *  V  W  N  V  H  L  N  D  R  E  M  N  V  V  F  F  F  *  K  E  T  L  F  </second_frame>
            <third_frame>   K  A  D  Y  S  S  P  L  I   : W  A  *  M  L  C  L  C  T  Y  W  F  W  Q  N  I  C  F  C  F  S  C  T  Y  E  T  Q   : A  H  F  K  G  W  C  P  S  C  N  S  F  P  Y  K  R  V  S  C  S  D  N  K  R  M  Q  K  V  G  Q  E  E  V  L  H  Q  V  D  D  *  T  T  R  *  K  W  G  L  F  *  T  A  M  *  C  T  D  L  D  T  I  A  P  K  V  C  Y  P  K  K  K  A  *  F  K  *  :  G  *  I  S  C  L  R  *  I  *  *  A  F  R  A  W  H  A  R  A  G  *  F  C  G  E  G  V  H  K  S  F  N  S  S  V  I  V  Q  C  Y  F  T  R  Y  S  *  R  P  S  T  Y  N  N  A  *  C  C  S  S  N  Y  W  *  E  :  K  F  S  F  *  N  N  R  A  K  T  G  I  C  W  E  *  R  R  E  A  S  G  S  S  S  K  L  C  R   : E  F  K  P  T  S  A  S  I  R  S  K  Q  G  A  C  Q  G  A  I  *  R  V  K  I  G  R  Y  S  S  R  C  Y  P  F  R  P  F  S  D  T   : E  R  K  C  Y  R  *  L  *  S  W  K  N  M  G  F  N  C  H  *  C  C  C  P  G  Y  G  F  Q  R  G  Q  L  R  D  K  L  *  F  P  R  R  C  C  S  I  Y  S  Q  N  W :   T  F  W  Q  S  R  K  E  W  T  G  D  N  I  L  Y  *  S  R  Y  S  L  F  E  E  H  R  K  C  Y  Y  V  F  W  W  *  G  S  G  V  D  H  V  S  D  Q  E  K  V  E  E  T  Q  A  A  K  R  N  H  F  N  S  A  R  H  M  N  H  P  S  *  F  *  A  Q  Y  Q  V  F  *  T  F  L  F  I  Q  H  *  C  M  I  Q  L  V  I  Y  V  K  Y  E  F  G  M  F  T  *  M  I  E  K  *  M  L  S  F  F  F  E  K  K  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124174" stop="124203"/>
                    <exon start="124298" stop="124378"/>
                    <exon start="124466" stop="124695"/>
                    <exon start="125413" stop="125607"/>
                    <exon start="125792" stop="125882"/>
                    <exon start="126931" stop="127053"/>
                    <exon start="127232" stop="127382"/>
                    <exon start="127510" stop="127709"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRQTIPVLLSGRECFACAPTGSGKTFAFVFPVLMKLKHTSKDGVRAVILSPTKELAAQTTRECKKLARKKFYIRLMTKQLAKSGDFSKLRCDVLISTPLRLKFAIQKRKLDLSRVEYLVLDESDKLFEPGMLEQVDFVVKACTNPSILRSLFSATLPDIVEDRARTIMHDAVRVIIGRKNSASETIEQKLVYVGSEEGKLLALRQSFAESLNPPVLVFVQNKERAKELYDELKLEDIRADVIHSDLSQIQRENAIDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDAAAAYIHRIGRSGRAGRSGQAITFYTEADIPFLRNIANVITSSGGEVPEWIMSLTKKKWRKHRPRRETISTQPDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="140173" PGL_stop="142400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140173" e_stop="140356"/>
            <exon e_start="140506" e_stop="140727"/>
            <exon e_start="140971" e_stop="141090"/>
            <exon e_start="141338" e_stop="142400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.571" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="140173" e_stop="140356" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="140357" i_stop="140505" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140506" e_stop="140727" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="140728" i_stop="140970" i_length="243"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="140971" e_stop="141090" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.571">
            <gDNA_intron_boundary i_start="141091" i_stop="141337" i_length="247"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="141338" e_stop="142400" e_length="1063"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140173" stop="140356"/>
              <exon start="140506" stop="140727"/>
              <exon start="140971" stop="141090"/>
              <exon start="141338" stop="141618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140261" stop="140356"/>
              <exon start="140506" stop="140727"/>
              <exon start="140971" stop="141090"/>
              <exon start="141338" stop="141364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141558" stop="141901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141559" stop="142142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141559" stop="141979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141653" stop="142400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141667" stop="142333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGAGCAGACGAAACATGCTTATTCAGTTGCAGTTGCCACAGCTGCAGCTGCTGAAGCTGCTGTCGCAGCTGCCCACGCTGCTGCAGAGGTTGTCCGGTTGACTACAGTGAACCAATTTTCTGGAAAATCACAAGAGGAAGTAGCTGCAATTAGAGTTCAGACTGCATTTCGAGGTTATCTG : GCTAGGAGGGCATTGAGGGCCTTACGAGGACTTGTCAGACTCAAATCGCTTGTTGATGGACCTACGGCCAAGAGACAAACAACAAACGCTCTAAAATGCATGCAGACACTATCGCGGATGCAATCTCAGATTAGTTCACGAAGGATCAGGATGTTGGAGGAGAACCGAACTCTCCAGAGGCAGCTTATGCAAAAGCATGTGAAAGAACTTGAGAGTCTGAGG : AGAGGAGAAGAATGGGATGATAGTCTACAATCCAAGGAGCGGGTTGAGGCTAGCTTGCTCAGCAAATATGAAGCTGCAATTAGACGAGAAAGAGCGCTTGCATATTCATATTCTCACCAG : CAAACCTGGAAGAAATCATCAAGATCTACCAATTTGTTGTTCATGGATCCGACCAATCCGCAATGGGGTTGGAGCTGGCTAGAGCGGTGGACGGGTGCTAGGCCTTGGGAAAGTCAAAGCATGTCTGAGAAACAACTTAAAACCGATCAGATGTCTGTTAGAAGCGTGAGCATTGCTGGAGGAGAAATTGCGAAGTCATTTGCCCGTCATCAGCTGAATTCTGAACTCCCTTCGTCTCCATCCAGACAAAAACCGAGCCATCCATCACGCTACCACTCTCCAACAACCCCTTCCAAGCCAACCACTTCAGTAGCAGCAGCCAGAAAACTGAAACCAGCAAGCCCGAGAATTAGTGCAATGAACCAAGATGATGATAACCGAAGCATGCTTAGCGTGCAGTCAGAACGGAACAGGAGGCATAGCATAGCAGGATCATCTATAAGAGACGACGAGAGCCTGGCAAGCTCGCCTTCAGTCCCAAGTTACATGGCGTCCACTCAGTCTGCAAAGGCCAAAACACGGTTGCAAAATCCATTAGGCATGGAAAATGGCAAACCAGAAAAAGGATCAGCAGGGTCTGTGAAGAAGCGGCTCTCTTATCCACCGTCACCTGCCAGAACAAGGCGGCATTCAGGCCCACCAAAGTTTGACAACACCTCTTTGAACACCTCCATCGCCGAGGATCATGTGAATGGAGTCGTCAACTAATTATTCTTGTCACAAACAATAAGCAATCCTGCCACCCTTCTGGCTTATAGGTACGCGTTTAAAATGCCCCTCTCTGCGCGATATCAACTACTTTGATTTGCTGCACTTGAGTCGAATGTCCTTCAGAAACAGTCTCTCCACTTGTGGGATTTCACTAGGTATGTTGTTGTGCGGGCTTTGCCCTGAATGACTCTTGCTTTTCGCGTTACTTTCTCTCGTGCTTGTTGATGACAACAAAAGTGTCAATACTTGTGAATCATTTTAGATAACATTTTCTTGATTGTGATAACATATATGATTGTATTATTTTTAGTACTATGTACACCATAATAGTGAAATGAAAAAAAATGTTCCT</gDNA_template>
            <first_frame> R  G  A  D  E  T  C  L  F  S  C  S  C  H  S  C  S  C  *  S  C  C  R  S  C  P  R  C  C  R  G  C  P  V  D  Y  S  E  P  I  F  W  K  I  T  R  G  S  S  C  N  *  S  S  D  C  I  S  R  L  S   : G  *  E  G  I  E  G  L  T  R  T  C  Q  T  Q  I  A  C  *  W  T  Y  G  Q  E  T  N  N  K  R  S  K  M  H  A  D  T  I  A  D  A  I  S  D  *  F  T  K  D  Q  D  V  G  G  E  P  N  S  P  E  A  A  Y  A  K  A  C  E  R  T  *  E  S  E   : E  R  R  R  M  G  *  *  S  T  I  Q  G  A  G  *  G  *  L  A  Q  Q  I  *  S  C  N  *  T  R  K  S  A  C  I  F  I  F  S  P   : A  N  L  E  E  I  I  K  I  Y  Q  F  V  V  H  G  S  D  Q  S  A  M  G  L  E  L  A  R  A  V  D  G  C  *  A  L  G  K  S  K  H  V  *  E  T  T  *  N  R  S  D  V  C  *  K  R  E  H  C  W  R  R  N  C  E  V  I  C  P  S  S  A  E  F  *  T  P  F  V  S  I  Q  T  K  T  E  P  S  I  T  L  P  L  S  N  N  P  F  Q  A  N  H  F  S  S  S  S  Q  K  T  E  T  S  K  P  E  N  *  C  N  E  P  R  *  *  *  P  K  H  A  *  R  A  V  R  T  E  Q  E  A  *  H  S  R  I  I  Y  K  R  R  R  E  P  G  K  L  A  F  S  P  K  L  H  G  V  H  S  V  C  K  G  Q  N  T  V  A  K  S  I  R  H  G  K  W  Q  T  R  K  R  I  S  R  V  C  E  E  A  A  L  L  S  T  V  T  C  Q  N  K  A  A  F  R  P  T  K  V  *  Q  H  L  F  E  H  L  H  R  R  G  S  C  E  W  S  R  Q  L  I  I  L  V  T  N  N  K  Q  S  C  H  P  S  G  L  *  V  R  V  *  N  A  P  L  C  A  I  S  T  T  L  I  C  C  T  *  V  E  C  P  S  E  T  V  S  P  L  V  G  F  H  *  V  C  C  C  A  G  F  A  L  N  D  S  C  F  S  R  Y  F  L  S  C  L  L  M  T  T  K  V  S  I  L  V  N  H  F  R  *  H  F  L  D  C  D  N  I  Y  D  C  I  I  F  S  T  M  Y  T  I  I  V  K  *  K  K  M  F   </first_frame>
            <second_frame>  E  E  Q  T  K  H  A  Y  S  V  A  V  A  T  A  A  A  A  E  A  A  V  A  A  A  H  A  A  A  E  V  V  R  L  T  T  V  N  Q  F  S  G  K  S  Q  E  E  V  A  A  I  R  V  Q  T  A  F  R  G  Y  L  :  A  R  R  A  L  R  A  L  R  G  L  V  R  L  K  S  L  V  D  G  P  T  A  K  R  Q  T  T  N  A  L  K  C  M  Q  T  L  S  R  M  Q  S  Q  I  S  S  R  R  I  R  M  L  E  E  N  R  T  L  Q  R  Q  L  M  Q  K  H  V  K  E  L  E  S  L  R  :  R  G  E  E  W  D  D  S  L  Q  S  K  E  R  V  E  A  S  L  L  S  K  Y  E  A  A  I  R  R  E  R  A  L  A  Y  S  Y  S  H  Q  :  Q  T  W  K  K  S  S  R  S  T  N  L  L  F  M  D  P  T  N  P  Q  W  G  W  S  W  L  E  R  W  T  G  A  R  P  W  E  S  Q  S  M  S  E  K  Q  L  K  T  D  Q  M  S  V  R  S  V  S  I  A  G  G  E  I  A  K  S  F  A  R  H  Q  L  N  S  E  L  P  S  S  P  S  R  Q  K  P  S  H  P  S  R  Y  H  S  P  T  T  P  S  K  P  T  T  S  V  A  A  A  R  K  L  K  P  A  S  P  R  I  S  A  M  N  Q  D  D  D  N  R  S  M  L  S  V  Q  S  E  R  N  R  R  H  S  I  A  G  S  S  I  R  D  D  E  S  L  A  S  S  P  S  V  P  S  Y  M  A  S  T  Q  S  A  K  A  K  T  R  L  Q  N  P  L  G  M  E  N  G  K  P  E  K  G  S  A  G  S  V  K  K  R  L  S  Y  P  P  S  P  A  R  T  R  R  H  S  G  P  P  K  F  D  N  T  S  L  N  T  S  I  A  E  D  H  V  N  G  V  V  N  *  L  F  L  S  Q  T  I  S  N  P  A  T  L  L  A  Y  R  Y  A  F  K  M  P  L  S  A  R  Y  Q  L  L  *  F  A  A  L  E  S  N  V  L  Q  K  Q  S  L  H  L  W  D  F  T  R  Y  V  V  V  R  A  L  P  *  M  T  L  A  F  R  V  T  F  S  R  A  C  *  *  Q  Q  K  C  Q  Y  L  *  I  I  L  D  N  I  F  L  I  V  I  T  Y  M  I  V  L  F  L  V  L  C  T  P  *  *  *  N  E  K  K  C  S  </second_frame>
            <third_frame>   R  S  R  R  N  M  L  I  Q  L  Q  L  P  Q  L  Q  L  L  K  L  L  S  Q  L  P  T  L  L  Q  R  L  S  G  *  L  Q  *  T  N  F  L  E  N  H  K  R  K  *  L  Q  L  E  F  R  L  H  F  E  V  I  W :   L  G  G  H  *  G  P  Y  E  D  L  S  D  S  N  R  L  L  M  D  L  R  P  R  D  K  Q  Q  T  L  *  N  A  C  R  H  Y  R  G  C  N  L  R  L  V  H  E  G  S  G  C  W  R  R  T  E  L  S  R  G  S  L  C  K  S  M  *  K  N  L  R  V  *  G :   E  E  K  N  G  M  I  V  Y  N  P  R  S  G  L  R  L  A  C  S  A  N  M  K  L  Q  L  D  E  K  E  R  L  H  I  H  I  L  T  S :   K  P  G  R  N  H  Q  D  L  P  I  C  C  S  W  I  R  P  I  R  N  G  V  G  A  G  *  S  G  G  R  V  L  G  L  G  K  V  K  A  C  L  R  N  N  L  K  P  I  R  C  L  L  E  A  *  A  L  L  E  E  K  L  R  S  H  L  P  V  I  S  *  I  L  N  S  L  R  L  H  P  D  K  N  R  A  I  H  H  A  T  T  L  Q  Q  P  L  P  S  Q  P  L  Q  *  Q  Q  P  E  N  *  N  Q  Q  A  R  E  L  V  Q  *  T  K  M  M  I  T  E  A  C  L  A  C  S  Q  N  G  T  G  G  I  A  *  Q  D  H  L  *  E  T  T  R  A  W  Q  A  R  L  Q  S  Q  V  T  W  R  P  L  S  L  Q  R  P  K  H  G  C  K  I  H  *  A  W  K  M  A  N  Q  K  K  D  Q  Q  G  L  *  R  S  G  S  L  I  H  R  H  L  P  E  Q  G  G  I  Q  A  H  Q  S  L  T  T  P  L  *  T  P  P  S  P  R  I  M  *  M  E  S  S  T  N  Y  S  C  H  K  Q  *  A  I  L  P  P  F  W  L  I  G  T  R  L  K  C  P  S  L  R  D  I  N  Y  F  D  L  L  H  L  S  R  M  S  F  R  N  S  L  S  T  C  G  I  S  L  G  M  L  L  C  G  L  C  P  E  *  L  L  L  F  A  L  L  S  L  V  L  V  D  D  N  K  S  V  N  T  C  E  S  F  *  I  T  F  S  *  L  *  *  H  I  *  L  Y  Y  F  *  Y  Y  V  H  H  N  S  E  M  K  K  N  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140174" stop="140356"/>
                    <exon start="140506" stop="140727"/>
                    <exon start="140971" stop="141090"/>
                    <exon start="141338" stop="142045"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1230</number_coding_nucleotides>
                  <number_encoded_amino_acids>410</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEQTKHAYSVAVATAAAAEAAVAAAHAAAEVVRLTTVNQFSGKSQEEVAAIRVQTAFRGYLARRALRALRGLVRLKSLVDGPTAKRQTTNALKCMQTLSRMQSQISSRRIRMLEENRTLQRQLMQKHVKELESLRRGEEWDDSLQSKERVEASLLSKYEAAIRRERALAYSYSHQQTWKKSSRSTNLLFMDPTNPQWGWSWLERWTGARPWESQSMSEKQLKTDQMSVRSVSIAGGEIAKSFARHQLNSELPSSPSRQKPSHPSRYHSPTTPSKPTTSVAAARKLKPASPRISAMNQDDDNRSMLSVQSERNRRHSIAGSSIRDDESLASSPSVPSYMASTQSAKAKTRLQNPLGMENGKPEKGSAGSVKKRLSYPPSPARTRRHSGPPKFDNTSLNTSIAEDHVNGVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="146088" PGL_stop="148977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146098" e_stop="146138"/>
            <exon e_start="147686" e_stop="147864"/>
            <exon e_start="148456" e_stop="148820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.996" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146098" e_stop="146138" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="146139" i_stop="147685" i_length="1547"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="147686" e_stop="147864" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.996">
            <gDNA_intron_boundary i_start="147865" i_stop="148455" i_length="591"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="148456" e_stop="148820" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146098" stop="146138"/>
              <exon start="147686" stop="147864"/>
              <exon start="148456" stop="148790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147757" stop="147864"/>
              <exon start="148456" stop="148820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTATATTCAAGCTCTTAGGTGAAGATCGGAAAAAATG : GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG : GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTGGTACTTAGACATACCCAAATCCAAGAGTCTTTAGTCAAAAAATTAGACACTAGAACATTGAGAATACATCATAAGATGTACAAGTTACAACTAGTTTGTTTTAATTCTAAGCAAGCTTGAGAAGTCGATTATATGAATTCTCACTATTCATGTGGCATTTTGGGTAGGTGAAAGGCTCTGCTTACACA</gDNA_template>
            <first_frame> F  V  I  F  K  L  L  G  E  D  R  K  K  W :   S  H  H  *  *  Q  E  W  L  *  P  L  L  H  M  L  Q  G  M  E  S  R  H  G  K  H  S  R  P  D  L  P  L  *  E  C  A  S  F  M  K  E  V  F  S  L  K  *  T  E  G  K  Q  L  *  F  L  E  S   : G  K  T  L  K  Q  I  K  *  G  K  H  I  G  R  *  W  *  L  T  I  Q  M  Q  E  V  V  T  T  L  L  L  K  *  T  R  R  K  T  L  C  L  D  R  R  R  T  M  D  P  R  S  R  L  H  E  I  F  A  G  T  *  T  Y  P  N  P  R  V  F  S  Q  K  I  R  H  *  N  I  E  N  T  S  *  D  V  Q  V  T  T  S  L  F  *  F  *  A  S  L  R  S  R  L  Y  E  F  S  L  F  M  W  H  F  G  *  V  K  G  S  A  Y  T </first_frame>
            <second_frame>  S  L  Y  S  S  S  *  V  K  I  G  K  N   : G  R  T  I  S  S  R  N  G  Y  S  R  C  C  I  C  F  K  V  W  N  P  G  M  A  S  I  Q  G  Q  T  S  H  C  E  N  A  Q  V  L  *  R  R  F  S  A  *  N  E  Q  K  G  S  S  S  D  S  W  S  Q  :  G  K  H  *  S  K  *  S  E  G  S  T  *  E  G  D  G  S  *  P  S  R  C  R  R  *  S  L  P  C  F  *  N  K  R  G  E  R  H  F  A  W  T  D  E  E  Q  W  I  R  V  L  G  Y  T  K  F  L  L  V  L  R  H  T  Q  I  Q  E  S  L  V  K  K  L  D  T  R  T  L  R  I  H  H  K  M  Y  K  L  Q  L  V  C  F  N  S  K  Q  A  *  E  V  D  Y  M  N  S  H  Y  S  C  G  I  L  G  R  *  K  A  L  L  T   </second_frame>
            <third_frame>   R  Y  I  Q  A  L  R  *  R  S  E  K  M  :  V  A  P  L  V  A  G  M  A  I  A  A  A  A  Y  A  S  R  Y  G  I  Q  A  W  Q  A  F  K  A  R  P  P  T  V  R  M  R  K  F  Y  E  G  G  F  Q  P  K  M  N  R  R  E  A  A  L  I  L  G  V  R :   E  N  T  E  A  N  K  V  R  E  A  H  R  K  V  M  V  A  N  H  P  D  A  G  G  S  H  Y  L  A  S  K  I  N  E  A  K  D  T  L  L  G  Q  T  K  N  N  G  S  A  F  *  A  T  R  N  F  C  W  Y  L  D  I  P  K  S  K  S  L  *  S  K  N  *  T  L  E  H  *  E  Y  I  I  R  C  T  S  Y  N  *  F  V  L  I  L  S  K  L  E  K  S  I  I  *  I  L  T  I  H  V  A  F  W  V  G  E  R  L  C  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146124" stop="146138"/>
                    <exon start="147686" stop="147864"/>
                    <exon start="148456" stop="148612"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSEKMVAPLVAGMAIAAAAYASRYGIQAWQAFKARPPTVRMRKFYEGGFQPKMNRREAALILGVRENTEANKVREAHRKVMVANHPDAGGSHYLASKINEAKDTLLGQTKNNGSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="146088" e_stop="146138"/>
            <exon e_start="147686" e_stop="147864"/>
            <exon e_start="148456" e_stop="148632"/>
            <exon e_start="148800" e_stop="148977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.922" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="146088" e_stop="146138" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="146139" i_stop="147685" i_length="1547"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="147686" e_stop="147864" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.996">
            <gDNA_intron_boundary i_start="147865" i_stop="148455" i_length="591"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="148456" e_stop="148632" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.766" acc_prob="0.977">
            <gDNA_intron_boundary i_start="148633" i_stop="148799" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="148800" e_stop="148977" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146088" stop="146138"/>
              <exon start="147686" stop="147864"/>
              <exon start="148456" stop="148632"/>
              <exon start="148800" stop="148977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTCTTACTTCGTTATATTCAAGCTCTTAGGTGAAGATCGGAAAAAATG : GTCGCACCATTAGTAGCAGGAATGGCTATAGCCGCTGCTGCATATGCTTCAAGGTATGGAATCCAGGCATGGCAAGCATTCAAGGCCAGACCTCCCACTGTGAGAATGCGCAAGTTTTATGAAGGAGGTTTTCAGCCTAAAATGAACAGAAGGGAAGCAGCTCTGATTCTTGGAGTCAG : GGAAAACACTGAAGCAAATAAAGTGAGGGAAGCACATAGGAAGGTGATGGTAGCTAACCATCCAGATGCAGGAGGTAGTCACTACCTTGCTTCTAAAATAAACGAGGCGAAAGACACTTTGCTTGGACAGACGAAGAACAATGGATCCGCGTTCTAGGCTACACGAAATTTTTGCTG : GTGAAAGGCTCTGCTTACACACCATCCTCTCCAGACGTTATGTCGTTATCGTCATGTGGCATTTCACTCTATTTGTATAGGTAATGGGGCTGAGGAATTCCAGAAATATTACTAATAGAACCAGAAAATGTGTATACTTCCAAAATTTGAATCACGTGGCTTTGAAGACCAGTTGCCA</gDNA_template>
            <first_frame> N  L  L  L  R  Y  I  Q  A  L  R  *  R  S  E  K  M  :  V  A  P  L  V  A  G  M  A  I  A  A  A  A  Y  A  S  R  Y  G  I  Q  A  W  Q  A  F  K  A  R  P  P  T  V  R  M  R  K  F  Y  E  G  G  F  Q  P  K  M  N  R  R  E  A  A  L  I  L  G  V  R :   E  N  T  E  A  N  K  V  R  E  A  H  R  K  V  M  V  A  N  H  P  D  A  G  G  S  H  Y  L  A  S  K  I  N  E  A  K  D  T  L  L  G  Q  T  K  N  N  G  S  A  F  *  A  T  R  N  F  C  W :   *  K  A  L  L  T  H  H  P  L  Q  T  L  C  R  Y  R  H  V  A  F  H  S  I  C  I  G  N  G  A  E  E  F  Q  K  Y  Y  *  *  N  Q  K  M  C  I  L  P  K  F  E  S  R  G  F  E  D  Q  L  P </first_frame>
            <second_frame>  I  S  Y  F  V  I  F  K  L  L  G  E  D  R  K  K  W :   S  H  H  *  *  Q  E  W  L  *  P  L  L  H  M  L  Q  G  M  E  S  R  H  G  K  H  S  R  P  D  L  P  L  *  E  C  A  S  F  M  K  E  V  F  S  L  K  *  T  E  G  K  Q  L  *  F  L  E  S   : G  K  T  L  K  Q  I  K  *  G  K  H  I  G  R  *  W  *  L  T  I  Q  M  Q  E  V  V  T  T  L  L  L  K  *  T  R  R  K  T  L  C  L  D  R  R  R  T  M  D  P  R  S  R  L  H  E  I  F  A   : G  E  R  L  C  L  H  T  I  L  S  R  R  Y  V  V  I  V  M  W  H  F  T  L  F  V  *  V  M  G  L  R  N  S  R  N  I  T  N  R  T  R  K  C  V  Y  F  Q  N  L  N  H  V  A  L  K  T  S  C   </second_frame>
            <third_frame>   S  L  T  S  L  Y  S  S  S  *  V  K  I  G  K  N   : G  R  T  I  S  S  R  N  G  Y  S  R  C  C  I  C  F  K  V  W  N  P  G  M  A  S  I  Q  G  Q  T  S  H  C  E  N  A  Q  V  L  *  R  R  F  S  A  *  N  E  Q  K  G  S  S  S  D  S  W  S  Q  :  G  K  H  *  S  K  *  S  E  G  S  T  *  E  G  D  G  S  *  P  S  R  C  R  R  *  S  L  P  C  F  *  N  K  R  G  E  R  H  F  A  W  T  D  E  E  Q  W  I  R  V  L  G  Y  T  K  F  L  L  :  V  K  G  S  A  Y  T  P  S  S  P  D  V  M  S  L  S  S  C  G  I  S  L  Y  L  Y  R  *  W  G  *  G  I  P  E  I  L  L  I  E  P  E  N  V  Y  T  S  K  I  *  I  T  W  L  *  R  P  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0067J16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146124" stop="146138"/>
                    <exon start="147686" stop="147864"/>
                    <exon start="148456" stop="148612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSEKMVAPLVAGMAIAAAAYASRYGIQAWQAFKARPPTVRMRKFYEGGFQPKMNRREAALILGVRENTEANKVREAHRKVMVANHPDAGGSHYLASKINEAKDTLLGQTKNNGSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 156 chains have been computed
$ 
$ memory statistics:
$ 1051808 bytes spliced alignments in total
$ 112 spliced alignments have been stored
$ 9391 bytes was the average size of a spliced alignment
$ 21136 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1921 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 170 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:32:25
-->
